Query 045475
Match_columns 662
No_of_seqs 308 out of 1477
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4s_A Chaperone protein HTPG; 99.7 1E-15 3.5E-20 171.9 19.2 111 117-230 8-145 (559)
2 1b63_A MUTL; DNA mismatch repa 99.6 2.7E-14 9.4E-19 151.0 21.3 106 118-231 6-119 (333)
3 2ioq_A Chaperone protein HTPG; 99.6 1.9E-15 6.5E-20 171.6 12.9 110 118-230 9-145 (624)
4 2o1u_A Endoplasmin; GRP94, HSP 99.6 4.7E-15 1.6E-19 169.2 15.5 99 132-233 43-169 (666)
5 2cg9_A ATP-dependent molecular 99.6 4.7E-14 1.6E-18 161.1 21.6 111 123-236 14-148 (677)
6 3t0h_A Heat shock protein HSP 99.5 2.7E-14 9.4E-19 144.1 9.5 123 116-241 12-159 (228)
7 3na3_A DNA mismatch repair pro 99.5 2.4E-13 8.3E-18 144.9 15.5 105 119-231 11-123 (348)
8 3h4l_A DNA mismatch repair pro 99.5 1.7E-12 5.7E-17 139.4 19.4 104 119-230 8-119 (367)
9 2gqp_A Endoplasmin; GRP94, HSP 99.5 6.5E-14 2.2E-18 141.8 7.9 118 118-238 14-161 (236)
10 2wer_A ATP-dependent molecular 99.5 6.2E-14 2.1E-18 140.0 7.5 108 123-233 14-145 (220)
11 3peh_A Endoplasmin homolog; st 99.4 7E-14 2.4E-18 144.9 7.7 116 118-236 28-169 (281)
12 1yc1_A HSP 86, heat shock prot 99.4 4.7E-14 1.6E-18 145.2 5.5 136 88-233 27-187 (264)
13 1qy5_A Endoplasmin; GRP94, NEC 99.4 8.8E-14 3E-18 143.6 7.3 113 124-239 17-158 (269)
14 3nmq_A Heat shock protein HSP 99.4 7.6E-14 2.6E-18 141.8 6.5 119 115-236 18-161 (239)
15 3o0i_A HSP90AA1 protein; HSP90 99.4 7.8E-14 2.7E-18 143.0 6.2 117 117-236 41-182 (256)
16 2ior_A Chaperone protein HTPG; 99.4 1.1E-13 3.7E-18 140.0 5.2 111 118-231 29-166 (235)
17 3ied_A Heat shock protein; HSP 99.3 4.8E-12 1.7E-16 129.6 7.0 76 157-236 119-205 (272)
18 1h7s_A PMS1 protein homolog 2; 99.2 2E-11 7E-16 130.7 6.8 139 120-266 18-167 (365)
19 2e61_A Zinc finger CW-type PWW 99.0 1.8E-10 6.2E-15 96.1 4.7 50 538-592 13-64 (69)
20 2l7p_A Histone-lysine N-methyl 99.0 1.8E-10 6.2E-15 102.4 4.0 51 538-592 23-73 (100)
21 4duh_A DNA gyrase subunit B; s 98.8 1.6E-08 5.5E-13 101.5 10.9 111 113-230 14-138 (220)
22 3fv5_A DNA topoisomerase 4 sub 98.8 4.6E-09 1.6E-13 103.9 5.1 89 136-230 19-120 (201)
23 1ei1_A DNA gyrase B, GYRB; ATP 98.5 6.2E-08 2.1E-12 104.8 6.5 111 113-230 13-137 (391)
24 1s16_A Topoisomerase IV subuni 98.5 8.7E-08 3E-12 103.6 6.2 107 113-230 14-134 (390)
25 1mu5_A Type II DNA topoisomera 98.3 8.4E-07 2.9E-11 98.1 8.9 98 133-230 31-136 (471)
26 4emv_A DNA topoisomerase IV, B 98.3 5.1E-07 1.7E-11 91.0 6.0 122 97-230 8-142 (226)
27 3cwv_A DNA gyrase, B subunit, 98.3 5.8E-07 2E-11 96.5 6.0 88 133-230 29-120 (369)
28 1zxm_A TOPO IIA ATPase, DNA to 98.3 1.1E-06 3.6E-11 95.5 7.9 90 135-229 53-156 (400)
29 2zbk_B Type 2 DNA topoisomeras 98.2 1E-06 3.5E-11 98.7 6.9 98 133-230 30-135 (530)
30 2c2a_A Sensor histidine kinase 98.2 1.3E-06 4.4E-11 86.1 6.1 93 135-229 139-236 (258)
31 1kij_A DNA gyrase subunit B; t 98.2 9E-07 3.1E-11 95.6 4.6 110 113-230 12-135 (390)
32 2btz_A Pyruvate dehydrogenase 98.1 4.5E-06 1.5E-10 88.8 8.9 93 135-229 232-338 (394)
33 1id0_A PHOQ histidine kinase; 98.1 5.7E-06 2E-10 74.6 8.2 85 135-228 45-132 (152)
34 3lnu_A Topoisomerase IV subuni 98.1 1.5E-06 5.1E-11 94.5 5.0 107 113-230 33-153 (408)
35 2q8g_A [pyruvate dehydrogenase 98.1 5.5E-06 1.9E-10 88.6 9.1 94 134-229 243-351 (407)
36 2e0a_A Pyruvate dehydrogenase 98.1 5.7E-06 1.9E-10 88.2 8.6 94 134-229 230-338 (394)
37 1i58_A Chemotaxis protein CHEA 98.1 4.5E-06 1.5E-10 78.7 6.8 90 136-228 49-176 (189)
38 1ysr_A Sensor-type histidine k 98.1 8E-06 2.7E-10 73.8 8.0 87 135-228 47-136 (150)
39 3sl2_A Sensor histidine kinase 98.1 3.9E-06 1.3E-10 78.3 5.9 94 135-229 44-140 (177)
40 1y8o_A [pyruvate dehydrogenase 98.0 6.7E-06 2.3E-10 88.5 8.2 93 135-229 254-362 (419)
41 1bxd_A ENVZ(290-450), protein 98.0 8.1E-06 2.8E-10 74.8 7.0 88 134-228 47-137 (161)
42 1r62_A Nitrogen regulation pro 98.0 5E-06 1.7E-10 75.1 5.3 86 135-228 49-147 (160)
43 4ew8_A Sensor protein DIVL; si 98.0 2.2E-05 7.6E-10 77.2 10.1 85 135-228 156-243 (268)
44 3d36_A Sporulation kinase B; G 98.0 1.6E-05 5.5E-10 76.6 8.8 88 134-229 123-213 (244)
45 3a0y_A Sensor protein; ATP-LID 98.0 1.2E-05 4.2E-10 72.1 7.3 85 134-227 47-135 (152)
46 1gkz_A [3-methyl-2-oxobutanoat 98.0 6.6E-06 2.3E-10 87.2 6.4 93 134-228 238-360 (388)
47 2q2e_B Type 2 DNA topoisomeras 97.9 7.9E-06 2.7E-10 93.1 5.6 97 133-230 36-140 (621)
48 1b3q_A Protein (chemotaxis pro 97.9 2.8E-05 9.5E-10 82.9 9.4 90 137-229 109-236 (379)
49 3ehg_A Sensor kinase (YOCF pro 97.8 2.7E-05 9.2E-10 69.3 6.6 72 135-228 41-115 (128)
50 3jz3_A Sensor protein QSEC; he 97.8 1.4E-05 4.8E-10 75.9 4.3 86 135-230 118-206 (222)
51 1pvg_A DNA topoisomerase II; G 97.8 3.4E-05 1.2E-09 84.2 7.8 88 136-228 66-167 (418)
52 3ehh_A Sensor kinase (YOCF pro 97.7 7.4E-05 2.5E-09 71.3 7.9 72 135-228 131-205 (218)
53 3a0r_A Sensor protein; four he 97.6 3.4E-05 1.2E-09 78.3 5.2 86 133-227 243-332 (349)
54 1th8_A Anti-sigma F factor; SP 97.6 8.2E-05 2.8E-09 67.3 7.1 86 134-228 39-126 (145)
55 3zxo_A Redox sensor histidine 97.6 7.6E-05 2.6E-09 65.6 6.1 71 133-229 42-115 (129)
56 3ttz_A DNA gyrase subunit B; p 97.6 4.6E-05 1.6E-09 75.2 4.7 81 133-230 30-111 (198)
57 3zxq_A Hypoxia sensor histidin 97.4 0.00012 4.1E-09 64.0 5.0 71 133-229 38-111 (124)
58 4fpp_A Phosphotransferase; fou 97.0 0.00069 2.4E-08 67.4 5.9 84 135-227 147-235 (247)
59 4gfh_A DNA topoisomerase 2; to 96.4 0.0042 1.4E-07 75.5 7.5 86 137-227 62-161 (1177)
60 1ixm_A SPO0B, protein (sporula 95.1 0.013 4.3E-07 57.4 3.9 58 138-195 109-171 (192)
61 3ke6_A Protein RV1364C/MT1410; 90.8 0.26 8.8E-06 52.7 5.9 74 135-227 298-373 (399)
62 2lv9_A Histone-lysine N-methyl 73.9 1.4 4.7E-05 38.6 2.0 35 540-578 39-73 (98)
63 3o70_A PHD finger protein 13; 72.7 1.6 5.3E-05 35.8 2.0 34 540-577 30-63 (68)
64 3o7a_A PHD finger protein 13 v 70.7 2.1 7.1E-05 33.0 2.2 33 540-576 15-47 (52)
65 3nmd_A CGMP dependent protein 63.9 16 0.00055 30.6 6.3 52 596-657 17-68 (72)
66 4gut_A Lysine-specific histone 58.5 3.1 0.0001 48.6 1.5 48 540-591 90-144 (776)
67 1wee_A PHD finger family prote 55.5 4.9 0.00017 32.8 1.8 34 541-577 29-62 (72)
68 1we9_A PHD finger family prote 51.3 8 0.00027 30.6 2.4 36 540-577 19-54 (64)
69 1a92_A Delta antigen; leucine 45.8 16 0.00054 28.3 3.1 33 602-634 12-44 (50)
70 3qh9_A Liprin-beta-2; coiled-c 44.8 44 0.0015 28.5 6.0 49 602-654 31-79 (81)
71 1wep_A PHF8; structural genomi 43.4 7.4 0.00025 32.4 1.1 36 540-577 24-59 (79)
72 3kqi_A GRC5, PHD finger protei 41.4 9.7 0.00033 31.4 1.5 34 540-577 22-57 (75)
73 2k16_A Transcription initiatio 34.1 13 0.00045 30.3 1.2 33 541-577 31-64 (75)
74 4dnd_A Syntaxin-10, SYN10; str 32.6 44 0.0015 30.6 4.5 55 601-656 71-125 (130)
75 1y6z_A Heat shock protein, put 28.4 69 0.0024 32.7 5.6 66 437-505 70-136 (263)
76 2kgg_A Histone demethylase jar 28.2 27 0.00093 26.6 2.0 34 540-576 15-49 (52)
77 2ri7_A Nucleosome-remodeling f 28.1 18 0.00062 33.9 1.2 37 540-578 20-56 (174)
78 1wem_A Death associated transc 27.7 18 0.00062 29.6 0.9 37 540-576 27-65 (76)
79 1usu_A Heat shock protein HSP8 27.0 1.1E+02 0.0036 31.3 6.7 66 437-505 68-134 (260)
80 4h62_V Mediator of RNA polymer 23.2 30 0.001 23.8 1.2 17 137-153 12-28 (31)
81 1yke_B RNA polymerase II holoe 22.6 1.2E+02 0.0042 28.4 5.7 46 607-659 88-133 (151)
82 2rsd_A E3 SUMO-protein ligase 22.4 39 0.0013 27.2 2.0 38 539-576 20-60 (68)
83 2gq0_A Chaperone protein HTPG; 22.2 1E+02 0.0036 32.1 5.6 63 437-502 66-129 (303)
84 2cge_A ATP-dependent molecular 21.9 1.2E+02 0.0042 32.6 6.3 63 437-502 66-129 (405)
85 3rk3_E Complexin-1; snare prot 20.6 1.1E+02 0.0037 24.7 4.0 18 636-653 26-43 (63)
86 3mq7_A Bone marrow stromal ant 20.1 1.5E+02 0.0052 26.9 5.4 44 599-653 55-102 (121)
No 1
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.67 E-value=1e-15 Score=171.88 Aligned_cols=111 Identities=28% Similarity=0.367 Sum_probs=81.8
Q ss_pred eeeeChh-hhhhhhcc-chhHHHHHHHHhccchhhhh-------------cCCceEEEEEEecCCCCeeEEEEEECCCCC
Q 045475 117 HLRVHPK-FLHSNATS-HKWALGAFAELLDNSLDEVC-------------NGATYVQVDLLKNKTDGTHMLLVEDNGGGM 181 (662)
Q Consensus 117 ~~~~~p~-fL~s~sts-h~~pf~AIaELVDNAiDA~~-------------agAt~V~I~i~~~~~~g~~~L~I~DNG~GM 181 (662)
.+++..+ .|+-++.+ |+.+..+|.|||.||+||.. ..++.+.|+|..++ +...|+|.|||.||
T Consensus 8 ~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGM 85 (559)
T 1y4s_A 8 GFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGM 85 (559)
T ss_dssp ECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEEEEECSSCC
T ss_pred eeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEEEEECCCCC
Confidence 3555553 45655533 77888999999999999962 12444455555443 34689999999999
Q ss_pred CHHHHHhhh-hccccccc-----------cCCCccCcccccccccccccCCEEEEEeeeCC
Q 045475 182 TPDKMRQCM-SLGYSAKS-----------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 182 ~~eel~~~~-~~G~S~K~-----------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
+.+++..++ .+|+|.+. .+...||+||+||.+ ++.++.+++|.|++.+
T Consensus 86 t~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~ 145 (559)
T 1y4s_A 86 TRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 145 (559)
T ss_dssp CHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGG-HHHHEEEEEEEEECSS
T ss_pred CHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhh-hhhccCeEEEEEcCCC
Confidence 999998765 58888753 134689999999976 5558999999999876
No 2
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.61 E-value=2.7e-14 Score=150.96 Aligned_cols=106 Identities=22% Similarity=0.359 Sum_probs=80.0
Q ss_pred eeeChhhhhhhhcc--chhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccc
Q 045475 118 LRVHPKFLHSNATS--HKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYS 195 (662)
Q Consensus 118 ~~~~p~fL~s~sts--h~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S 195 (662)
-.++|...+.++.. -..|..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++...++
T Consensus 6 ~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~t 79 (333)
T 1b63_A 6 QVLPPQLANQIAAGEVVERPASVVKELVENSLDA---GATRIDIDIER---GGAKLIRIRDNGCGIKKDELALALARHAT 79 (333)
T ss_dssp CCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGHHHHHSTTCC
T ss_pred eECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHC---CCCeEEEEEEe---CCceEEEEEEcCCCcCHHHHHHhhhcccc
Confidence 34566666666544 367889999999999995 78999988864 24468999999999999999998864444
Q ss_pred ccccC------CCccCcccccccccccccCCEEEEEeeeCCC
Q 045475 196 AKSKL------ANTIGQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 196 ~K~~~------~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
+|... ...+|.+|+||.++ ...++++|.|++.+.
T Consensus 80 sK~~~~~d~~~~~~~G~~G~gl~si--~~vs~l~v~s~~~~~ 119 (333)
T 1b63_A 80 SKIASLDDLEAIISLGFRGEALASI--SSVSRLTLTSRTAEQ 119 (333)
T ss_dssp SSCCSHHHHHTCCSSCCSSCHHHHH--HTTSEEEEEEECTTC
T ss_pred cCccccchhhhccccCccccchhhh--hcCCcEEEEEecCCC
Confidence 45321 24789999998543 344489999998764
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.61 E-value=1.9e-15 Score=171.58 Aligned_cols=110 Identities=27% Similarity=0.369 Sum_probs=76.2
Q ss_pred eeeCh-hhhhhhhcc-chhHHHHHHHHhccchhhhh-------------cCCceEEEEEEecCCCCeeEEEEEECCCCCC
Q 045475 118 LRVHP-KFLHSNATS-HKWALGAFAELLDNSLDEVC-------------NGATYVQVDLLKNKTDGTHMLLVEDNGGGMT 182 (662)
Q Consensus 118 ~~~~p-~fL~s~sts-h~~pf~AIaELVDNAiDA~~-------------agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~ 182 (662)
+++.. ..|+-++.+ |+.+..+|.|||+||+||.. ..++.+.|+|..+. +...|+|.|||+||+
T Consensus 9 Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~I~DnGiGMt 86 (624)
T 2ioq_A 9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMT 86 (624)
T ss_dssp ------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCC
T ss_pred eeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeC--CCcEEEEEECCCCCC
Confidence 34443 344555533 66777899999999999962 12444555555543 347899999999999
Q ss_pred HHHHHhhh-hccccccc-----------cCCCccCcccccccccccccCCEEEEEeeeCC
Q 045475 183 PDKMRQCM-SLGYSAKS-----------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 183 ~eel~~~~-~~G~S~K~-----------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
.+++..++ .+|+|.+. .+...||+||+||.+ ++.++.+++|.|++.+
T Consensus 87 ~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~ 145 (624)
T 2ioq_A 87 RDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 145 (624)
T ss_dssp HHHHHHHHHHHCC---------------CCTTHHHHHHHHHHH-HHHHEEEEEEEEECTT
T ss_pred HHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHH-HHhcCCeEEEEECCCC
Confidence 99998765 58888742 134579999999976 4558999999999876
No 4
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.60 E-value=4.7e-15 Score=169.18 Aligned_cols=99 Identities=27% Similarity=0.382 Sum_probs=63.9
Q ss_pred chhHHHHHHHHhccchhhhh-------------cCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhh-hcccccc
Q 045475 132 HKWALGAFAELLDNSLDEVC-------------NGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCM-SLGYSAK 197 (662)
Q Consensus 132 h~~pf~AIaELVDNAiDA~~-------------agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~-~~G~S~K 197 (662)
|+.+..+|.|||.||+||.. ..+..+.|.|..+. +...|+|.|||+||+.+++..+| ++|+|.+
T Consensus 43 Ysn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~tIA~SGt 120 (666)
T 2o1u_A 43 YKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMTREELVKNLGTIAKSGT 120 (666)
T ss_dssp SSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHTTC------
T ss_pred cCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeC--CCCEEEEEECCCCCCHHHHHHHHhhhccccc
Confidence 55566799999999999962 12444566665543 34789999999999999998866 4787744
Q ss_pred c--------------cCCCccCcccccccccccccCCEEEEEeeeCCCCC
Q 045475 198 S--------------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDG 233 (662)
Q Consensus 198 ~--------------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G 233 (662)
. .+...||+||+||.++ +.++.+++|.||+.+..|
T Consensus 121 k~f~~kl~~~~~~~~~d~~~IGqFGvGfySa-f~vAdkV~V~Sr~~~~~~ 169 (666)
T 2o1u_A 121 SEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNNDTQ 169 (666)
T ss_dssp -------------------------CTTGGG-GGTEEEEEEEEECTTSCC
T ss_pred HHHHHHhhhcccccccchhhccCCCcHHHhH-HHhcCEEEEEEeeCCCce
Confidence 2 1335799999999866 669999999999876434
No 5
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.7e-14 Score=161.11 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=80.9
Q ss_pred hhhhhhhcc-chhHHHHHHHHhccchhhhh-------------cCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHh
Q 045475 123 KFLHSNATS-HKWALGAFAELLDNSLDEVC-------------NGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQ 188 (662)
Q Consensus 123 ~fL~s~sts-h~~pf~AIaELVDNAiDA~~-------------agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~ 188 (662)
..|+-++.+ |+.+..+|.|||.||+||.. ..+..+.|.|..+. +...|+|.|||+||+.+++..
T Consensus 14 ~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~ 91 (677)
T 2cg9_A 14 QLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELIN 91 (677)
T ss_dssp HHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEG--GGTEEEEEECSCCCCHHHHHG
T ss_pred HHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeC--CCCEEEEEECCCCCCHHHHHH
Confidence 344544443 56666799999999999973 12334555555443 346899999999999999988
Q ss_pred hh-hccccccc---------cCCCccCcccccccccccccCCEEEEEeeeCCCCCcee
Q 045475 189 CM-SLGYSAKS---------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCS 236 (662)
Q Consensus 189 ~~-~~G~S~K~---------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~ 236 (662)
+| ++|+|++. .+...||+||+||++| |.++.+++|.||+.+..|..|
T Consensus 92 ~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySa-f~vadkV~V~Sk~~~~~~~~W 148 (677)
T 2cg9_A 92 NLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSNDDEQYIW 148 (677)
T ss_dssp GGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGG-GGTEEEEEEEEECTTSCEEEE
T ss_pred HHHhHhccccHHHHHhhhcccchhhcCCCCchhHHH-hhcCcEEEEEEccCCCceEEE
Confidence 76 58888542 1346799999999866 669999999999987544333
No 6
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.51 E-value=2.7e-14 Score=144.10 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=90.0
Q ss_pred eeeeeCh-hhhhhhhcc-chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCC
Q 045475 116 DHLRVHP-KFLHSNATS-HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGG 180 (662)
Q Consensus 116 ~~~~~~p-~fL~s~sts-h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~G 180 (662)
..++++- ..|+-++.+ |+.+..+|.|||.||+||... ....+.|.|..+. +...|.|.|||.|
T Consensus 12 ~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~--~~~~i~V~DnG~G 89 (228)
T 3t0h_A 12 FAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLTIVDTGIG 89 (228)
T ss_dssp EECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET--TTTEEEEEECSCC
T ss_pred eEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeC--CeeEEEEEeCCCC
Confidence 3445543 455666644 677778999999999998632 1124667766543 5678999999999
Q ss_pred CCHHHHHhhh-hccccccc---------cCCCccCcccccccccccccCCEEEEEeeeCCCCCceeeeeec
Q 045475 181 MTPDKMRQCM-SLGYSAKS---------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIG 241 (662)
Q Consensus 181 M~~eel~~~~-~~G~S~K~---------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~t~sig 241 (662)
|+++++..++ ++++|.+. .+...+|+||+||+++ +.++.+++|.||+.+..|..|....|
T Consensus 90 Ms~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~-~~vad~v~V~Sr~~~~~~~~w~~~g~ 159 (228)
T 3t0h_A 90 MTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHNDDEQYAWESSAG 159 (228)
T ss_dssp CCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTTSCEEEEEECST
T ss_pred CCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHH-hccCCEEEEEEecCCCCcEEEEEcCC
Confidence 9999998766 57777652 2356899999999877 45899999999998755766655443
No 7
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.49 E-value=2.4e-13 Score=144.88 Aligned_cols=105 Identities=19% Similarity=0.314 Sum_probs=80.8
Q ss_pred eeChhhhhhhhcc--chhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccc
Q 045475 119 RVHPKFLHSNATS--HKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSA 196 (662)
Q Consensus 119 ~~~p~fL~s~sts--h~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~ 196 (662)
.+++...+.++.. -..|.+||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..++++
T Consensus 11 ~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA---~a~~I~I~i~~---~~~~~I~V~DnG~GI~~~~l~~~~~~~~ts 84 (348)
T 3na3_A 11 RLDETVVNRIAAGEVIQRPANAIKEMIENCLDA---KSTSIQVIVKE---GGLKLIQIQDNGTGIRKEDLDIVCERFTTS 84 (348)
T ss_dssp CCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGGGTTTSTTCCS
T ss_pred cCCHHHHHhhcccCcccCHHHHHHHHHHHHHHc---CCCEEEEEEEe---CCEEEEEEEECCcCcChHHhhhhhcccccc
Confidence 4567777777654 367779999999999996 89999998863 345679999999999999999999888877
Q ss_pred cccC------CCccCcccccccccccccCCEEEEEeeeCCC
Q 045475 197 KSKL------ANTIGQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 197 K~~~------~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
|... ..++|.+|.||.+ ...++ +++|.||+.+.
T Consensus 85 K~~~~~dl~~i~s~GfrGeaL~S-i~avs-~l~v~sr~~~~ 123 (348)
T 3na3_A 85 KLQSFEDLASISTYGFRGEALAS-ISHVA-HVTITTKTADG 123 (348)
T ss_dssp SCCCC---------CCTTCHHHH-HHHSS-EEEEEEECTTC
T ss_pred ccCcchhhhccccCCcCChHHHH-hhccc-EEEEEEEECCC
Confidence 7532 2468999999843 33455 89999999875
No 8
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.7e-12 Score=139.35 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=75.6
Q ss_pred eeChhhhhhhhcc--chhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccc
Q 045475 119 RVHPKFLHSNATS--HKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSA 196 (662)
Q Consensus 119 ~~~p~fL~s~sts--h~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~ 196 (662)
.+++...+.++.. -..|.+||.||||||+|| +|+.|.|.+.. ++...|.|.|||+||+++++..++..++++
T Consensus 8 ~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 81 (367)
T 3h4l_A 8 QINDIDVHRITSGQVITDLTTAVKELVDNSIDA---NANQIEIIFKD---YGLESIECSDNGDGIDPSNYEFLALKHYTS 81 (367)
T ss_dssp -----CTHHHHHHHHCCSHHHHHHHHHHHHHHT---TCSEEEEEEET---TTTSEEEEEECSCCCCGGGTTTTTCCEEC-
T ss_pred eCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEECCCCcChhHhccceeccccC
Confidence 4566777777654 366779999999999995 89999988852 456789999999999999999998877777
Q ss_pred cccC------CCccCcccccccccccccCCEEEEEeeeCC
Q 045475 197 KSKL------ANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 197 K~~~------~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
|... ..+.|..|.||.+ ...++ +++|.||+.+
T Consensus 82 K~~~~~Dl~~i~t~GfrGeaL~S-i~avS-~l~V~sr~~~ 119 (367)
T 3h4l_A 82 KIAKFQDVAKVQTLGFRGEALSS-LCGIA-KLSVITTTSP 119 (367)
T ss_dssp --------CCCCEEEETTHHHHH-HHHSS-EEEEEEESST
T ss_pred cCCchhhhhhhhccCccchHHHH-hhccC-EEEEEEEECC
Confidence 6532 2456888999843 34455 7999999876
No 9
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.46 E-value=6.5e-14 Score=141.77 Aligned_cols=118 Identities=23% Similarity=0.322 Sum_probs=80.4
Q ss_pred eeeC-hhhhhhhhc-cchhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCC
Q 045475 118 LRVH-PKFLHSNAT-SHKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMT 182 (662)
Q Consensus 118 ~~~~-p~fL~s~st-sh~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~ 182 (662)
+++. ...|+-++. .|+.+..+|.|||+||+||... .+..+.|+|..+. +...|.|.|||.||+
T Consensus 14 F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~--~~~~i~I~DnG~GMt 91 (236)
T 2gqp_A 14 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMT 91 (236)
T ss_dssp CCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCC
T ss_pred hhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcC--CCCEEEEEECCcCCC
Confidence 4444 234555554 3667778999999999998641 1234556655443 346899999999999
Q ss_pred HHHHHhhh-hccccccc--------------cCCCccCcccccccccccccCCEEEEEeeeCCCCCceeee
Q 045475 183 PDKMRQCM-SLGYSAKS--------------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQ 238 (662)
Q Consensus 183 ~eel~~~~-~~G~S~K~--------------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~t~ 238 (662)
++++..+| .+|+|.+. .+...||+||+||++ ++.++.+++|.|++.+..|..|..
T Consensus 92 ~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S-~f~va~~v~V~Sr~~~~~~~~w~~ 161 (236)
T 2gqp_A 92 REELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYS-AFLVADKVIVTSKHNNDTQHIWES 161 (236)
T ss_dssp HHHHHHHHHCC---------------------CHHHHHHTTCGGGG-GGGTEEEEEEEEECTTSCCEEEEE
T ss_pred HHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhh-HhhcCCEEEEEEeCCCCceEEEEE
Confidence 99998766 58888542 123468999999976 566999999999998755655543
No 10
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.45 E-value=6.2e-14 Score=140.03 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=80.0
Q ss_pred hhhhhhhc-cchhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHh
Q 045475 123 KFLHSNAT-SHKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQ 188 (662)
Q Consensus 123 ~fL~s~st-sh~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~ 188 (662)
..|+-++. .|+.+..+|.|||+||+||... ....+.|.+..+. +...|.|.|||.||+++++..
T Consensus 14 ~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~--~~~~i~I~DnG~GMs~edl~~ 91 (220)
T 2wer_A 14 QLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELIN 91 (220)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEG--GGTEEEEEECSCCCCHHHHHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECC--CCCEEEEEEcCCCCCHHHHHH
Confidence 34555554 3566668999999999998641 1245566665442 456899999999999999987
Q ss_pred hh-hccccccc---------cCCCccCcccccccccccccCCEEEEEeeeCCCCC
Q 045475 189 CM-SLGYSAKS---------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDG 233 (662)
Q Consensus 189 ~~-~~G~S~K~---------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G 233 (662)
+| .+|+|.+. .+...+|+||+||+++ +.++.++.|.|++.+..|
T Consensus 92 ~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~~~~ 145 (220)
T 2wer_A 92 NLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSNDDEQ 145 (220)
T ss_dssp HTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTTSCC
T ss_pred HHHhHhcccchhHHHHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCCCce
Confidence 66 58887542 2346899999999755 679999999999876433
No 11
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.45 E-value=7e-14 Score=144.88 Aligned_cols=116 Identities=21% Similarity=0.306 Sum_probs=84.3
Q ss_pred eeeCh-hhhhhhhcc-chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCC
Q 045475 118 LRVHP-KFLHSNATS-HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMT 182 (662)
Q Consensus 118 ~~~~p-~fL~s~sts-h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~ 182 (662)
+++.- ..|.-++.+ |+.+..+|.|||.||.||... ....+.|.|..+. +...|.|.|||.||+
T Consensus 28 Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~--~~~tLtI~DNGiGMt 105 (281)
T 3peh_A 28 YQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILSITDTGIGMT 105 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET--TTTEEEEEECSCCCC
T ss_pred ehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcC--CCcEEEEEeCCCCCC
Confidence 44442 344555533 677778999999999999741 1234666766554 357899999999999
Q ss_pred HHHHHhhh-hccccccc----------cCCCccCcccccccccccccCCEEEEEeeeCCCCCcee
Q 045475 183 PDKMRQCM-SLGYSAKS----------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCS 236 (662)
Q Consensus 183 ~eel~~~~-~~G~S~K~----------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~ 236 (662)
.+++...| .+|+|.+. .+...||+||+||++| |.++.+++|.|++.+..+..|
T Consensus 106 ~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySa-f~vadkV~V~Sk~~~~~~~~W 169 (281)
T 3peh_A 106 KVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSA-FLVADKVIVYTKNNDDEQYIW 169 (281)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGG-GGTEEEEEEEEECTTSCCEEE
T ss_pred HHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhh-ccccCEEEEEEecCCCCEEEE
Confidence 99998766 47777532 2346899999999876 559999999999877545444
No 12
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.44 E-value=4.7e-14 Score=145.16 Aligned_cols=136 Identities=19% Similarity=0.260 Sum_probs=87.0
Q ss_pred hhhhhhhhcccCCCCCCCCCCccCcccceeeeeC-hhhhhhhhc-cchhHHHHHHHHhccchhhhhc-------------
Q 045475 88 LRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVH-PKFLHSNAT-SHKWALGAFAELLDNSLDEVCN------------- 152 (662)
Q Consensus 88 ~~~~~~fw~ag~~~~~~~~~~~~~~~~~~~~~~~-p~fL~s~st-sh~~pf~AIaELVDNAiDA~~a------------- 152 (662)
...-|++|.++.=... .......+++. ...|+.++. .|..|..+|.|||+||+||...
T Consensus 27 ~~~~~~~~~~~~~~~~-------~~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~ 99 (264)
T 1yc1_A 27 DDDDKDRWGSDQPMEE-------EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLD 99 (264)
T ss_dssp -----------------------CCEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHhhcCCCcccc-------ccceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccC
Confidence 3445678887742221 11233344442 345666664 4778889999999999998641
Q ss_pred CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhh-hccccccc---------cCCCccCcccccccccccccCCEE
Q 045475 153 GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCM-SLGYSAKS---------KLANTIGQYGNGFKTSTMRLGADV 222 (662)
Q Consensus 153 gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~-~~G~S~K~---------~~~~~IG~fG~GlKsAs~rlg~~v 222 (662)
..+.|.|.|..+. +...|.|.|||.||++++|..++ .+|+|.+. .+...||+||+||+++.+ ++.++
T Consensus 100 ~~~~i~I~i~~d~--~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v 176 (264)
T 1yc1_A 100 SGKELHINLIPNK--QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKV 176 (264)
T ss_dssp GCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEE
T ss_pred CCCeEEEEEEECC--CeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEE
Confidence 1266777776543 45689999999999999997765 58888653 234689999999987654 99999
Q ss_pred EEEeeeCCCCC
Q 045475 223 IVFSRCQGTDG 233 (662)
Q Consensus 223 ~V~Sk~~g~~G 233 (662)
+|.|++.+..|
T Consensus 177 ~V~Sr~~~~~~ 187 (264)
T 1yc1_A 177 TVITKHNDDEQ 187 (264)
T ss_dssp EEEEECTTSCC
T ss_pred EEEEecCCCce
Confidence 99999876433
No 13
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.44 E-value=8.8e-14 Score=143.57 Aligned_cols=113 Identities=25% Similarity=0.332 Sum_probs=82.5
Q ss_pred hhhhhhcc-chhHHHHHHHHhccchhhhh-------------cCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhh
Q 045475 124 FLHSNATS-HKWALGAFAELLDNSLDEVC-------------NGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQC 189 (662)
Q Consensus 124 fL~s~sts-h~~pf~AIaELVDNAiDA~~-------------agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~ 189 (662)
.|+-++.+ |+.+..+|.|||.||+||.. .....+.|.|..+. +...|.|.|||.||+.++|...
T Consensus 17 Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~l~I~DnGiGMt~edl~~~ 94 (269)
T 1qy5_A 17 MMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMTREELVKN 94 (269)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHH
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcC--CceEEEEEECCCCCCHHHHHHH
Confidence 44444443 56666799999999999864 12344666666543 4578999999999999999776
Q ss_pred h-hccccccc--------------cCCCccCcccccccccccccCCEEEEEeeeCCCCCceeeee
Q 045475 190 M-SLGYSAKS--------------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQS 239 (662)
Q Consensus 190 ~-~~G~S~K~--------------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~t~s 239 (662)
| .+|+|.+. .+...||+||+||+++ +.++..++|.|++.+..|..|...
T Consensus 95 l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySa-f~va~~v~V~Sk~~~~~~~~w~s~ 158 (269)
T 1qy5_A 95 LGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNNDTQHIWESD 158 (269)
T ss_dssp HHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGG-GGTEEEEEEEEECTTSCCEEEEEC
T ss_pred hhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHH-hhccceEEEEEEecCCcEEEEEEe
Confidence 5 58887431 2335689999999876 558999999999987556666433
No 14
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.43 E-value=7.6e-14 Score=141.75 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=86.1
Q ss_pred ceeeeeC-hhhhhhhhcc-chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCC
Q 045475 115 MDHLRVH-PKFLHSNATS-HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGG 179 (662)
Q Consensus 115 ~~~~~~~-p~fL~s~sts-h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~ 179 (662)
...+++. ...|+-++.+ |+.+..+|.|||.||.||... ....+.|+|..++ +...|.|.|||.
T Consensus 18 ~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~L~I~DnGi 95 (239)
T 3nmq_A 18 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNP--QERTLTLVDTGI 95 (239)
T ss_dssp EEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEEEEECSC
T ss_pred eEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeC--CccEEEEEeCCC
Confidence 3445555 3556666643 666668999999999999741 1234667776654 457899999999
Q ss_pred CCCHHHHHhhh-hccccccc---------cCCCccCcccccccccccccCCEEEEEeeeCCCCCcee
Q 045475 180 GMTPDKMRQCM-SLGYSAKS---------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCS 236 (662)
Q Consensus 180 GM~~eel~~~~-~~G~S~K~---------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~ 236 (662)
||+++++.+.+ .+|+|.+. .+...||+||+||+++ |.++.+++|.||+.+..+..|
T Consensus 96 GMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySa-f~vadkv~V~Sk~~~~~~~~W 161 (239)
T 3nmq_A 96 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVVVITKHNDDEQYAW 161 (239)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTTSCCEEE
T ss_pred CCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccc-cccCCEEEEEEeeCCCceeEE
Confidence 99999997654 57776542 2456899999999876 569999999999876444333
No 15
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.43 E-value=7.8e-14 Score=142.96 Aligned_cols=117 Identities=20% Similarity=0.277 Sum_probs=84.8
Q ss_pred eeeeCh-hhhhhhhcc-chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCC
Q 045475 117 HLRVHP-KFLHSNATS-HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGM 181 (662)
Q Consensus 117 ~~~~~p-~fL~s~sts-h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM 181 (662)
.+++.- ..|+-++.+ |+.+..+|.|||.||+||... ....+.|+|..+. +...|.|.|||.||
T Consensus 41 ~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnG~GM 118 (256)
T 3o0i_A 41 AFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLTIVDTGIGM 118 (256)
T ss_dssp ECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEEEEECSCCC
T ss_pred EeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcC--CceEEEEecCCCCc
Confidence 344443 444555533 666668999999999998632 1225677776543 56789999999999
Q ss_pred CHHHHHhhh-hccccccc---------cCCCccCcccccccccccccCCEEEEEeeeCCCCCcee
Q 045475 182 TPDKMRQCM-SLGYSAKS---------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCS 236 (662)
Q Consensus 182 ~~eel~~~~-~~G~S~K~---------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~ 236 (662)
+++++..++ ++++|.+. .+...||+||+||++++ .++.+++|.||+.+..|..|
T Consensus 119 t~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f-~Vadkv~V~Sr~~~~~g~~w 182 (256)
T 3o0i_A 119 TKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY-LVAEKVTVITKHNDDEQYAW 182 (256)
T ss_dssp CHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGG-GTEEEEEEEEECTTSCEEEE
T ss_pred CHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhh-ccCCeEEEEEcCCCCceEEE
Confidence 999998765 57777552 24568999999998874 58999999999876444443
No 16
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.40 E-value=1.1e-13 Score=139.96 Aligned_cols=111 Identities=26% Similarity=0.363 Sum_probs=81.2
Q ss_pred eeeC-hhhhhhhh-ccchhHHHHHHHHhccchhhhh-------------cCCceEEEEEEecCCCCeeEEEEEECCCCCC
Q 045475 118 LRVH-PKFLHSNA-TSHKWALGAFAELLDNSLDEVC-------------NGATYVQVDLLKNKTDGTHMLLVEDNGGGMT 182 (662)
Q Consensus 118 ~~~~-p~fL~s~s-tsh~~pf~AIaELVDNAiDA~~-------------agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~ 182 (662)
++++ ...++.++ ..+..|..||.|||+||+||.. +.++.+.|.|..+. +...|.|.|||.||+
T Consensus 29 f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~--~~~~i~I~DnG~GMs 106 (235)
T 2ior_A 29 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMT 106 (235)
T ss_dssp CCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEET--TTTEEEEEECSSCCC
T ss_pred eehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcC--CceEEEEEECCCCCC
Confidence 4444 23444454 3367778999999999999863 12555566665443 335799999999999
Q ss_pred HHHHHhhh-hccccccc-----------cCCCccCcccccccccccccCCEEEEEeeeCCC
Q 045475 183 PDKMRQCM-SLGYSAKS-----------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 183 ~eel~~~~-~~G~S~K~-----------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
++++..+| .+|+|.+. .+...+|+||+||+++ +.++++++|.|++.+.
T Consensus 107 ~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~ 166 (235)
T 2ior_A 107 RDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGE 166 (235)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTS
T ss_pred HHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCC
Confidence 99998765 68888652 1235789999999865 7799999999998763
No 17
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.25 E-value=4.8e-12 Score=129.62 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=57.8
Q ss_pred EEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhh-hccccccc----------cCCCccCcccccccccccccCCEEEEE
Q 045475 157 VQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCM-SLGYSAKS----------KLANTIGQYGNGFKTSTMRLGADVIVF 225 (662)
Q Consensus 157 V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~-~~G~S~K~----------~~~~~IG~fG~GlKsAs~rlg~~v~V~ 225 (662)
+.|+|..++ ....|+|.|||.||+.++|.+.| .+++|.+. .+...||+||+||++| |.++.+++|.
T Consensus 119 l~I~I~~Dk--~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySa-FmVAdkV~V~ 195 (272)
T 3ied_A 119 LIIKIKPDK--EKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSS-FLVSNRVEVY 195 (272)
T ss_dssp CCEEEEEET--TTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGG-GGTEEEEEEE
T ss_pred cEEEEEEeC--CCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceehee-eccCCEEEEE
Confidence 566776654 45689999999999999999866 57877532 2346799999999876 5599999999
Q ss_pred eeeCCCCCcee
Q 045475 226 SRCQGTDGKCS 236 (662)
Q Consensus 226 Sk~~g~~G~~~ 236 (662)
|| .+..+.+|
T Consensus 196 Sk-~dd~~~~W 205 (272)
T 3ied_A 196 TK-KEDQIYRW 205 (272)
T ss_dssp EE-SSSCEEEE
T ss_pred Ec-CCCceEEE
Confidence 99 44334444
No 18
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.17 E-value=2e-11 Score=130.75 Aligned_cols=139 Identities=22% Similarity=0.226 Sum_probs=85.6
Q ss_pred eChhhhhhhhcc--chhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccccc
Q 045475 120 VHPKFLHSNATS--HKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAK 197 (662)
Q Consensus 120 ~~p~fL~s~sts--h~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K 197 (662)
+++...+.++.. ...+..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++...+++|
T Consensus 18 L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA---~a~~I~I~i~~---~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK 91 (365)
T 1h7s_A 18 IDRKSVHQICSGQVVLSLSTAVKELVENSLDA---GATNIDLKLKD---YGVDLIEVSDNGCGVEEENFEGLTLKHHTSK 91 (365)
T ss_dssp -----------CEEECCHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGSGGGGC------
T ss_pred CCHHHHHHhcCCCchhhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCcEEEEEEECCCCcCHHHHHHHhhhccccc
Confidence 555666666544 467779999999999995 78999888864 2456899999999999999999887545555
Q ss_pred ccC---C---CccCcccccccccccccCCEEEEEeeeCCCC-Cceeeee-ecccee-eeecCCCCcceEEeccccccc
Q 045475 198 SKL---A---NTIGQYGNGFKTSTMRLGADVIVFSRCQGTD-GKCSTQS-IGMLSY-TFLRGTGKEDIVVPMVDYEKR 266 (662)
Q Consensus 198 ~~~---~---~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~-G~~~t~s-iglLS~-Tfl~~~~~~dI~VPil~~~~~ 266 (662)
... . .++|.+|+||.+ ...++ .++|.|++.+.. |..++.. .|.+.. .-......+.|.|..++++.+
T Consensus 92 ~~~~~dl~~i~s~G~rG~gl~s-i~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~~~~~~~GT~V~v~~LF~n~P 167 (365)
T 1h7s_A 92 IQEFADLTQVETFGFRGEALSS-LCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLP 167 (365)
T ss_dssp ----CCTTCSEEESSSSSHHHH-HHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEEECCCCSEEEEEEESTTTTSH
T ss_pred cccccchhcccccCCCCchhhh-hhhhc-cEEEEEccCCCcceEEEEEcCCCceEeecccCCCCCcEEEEeecccccc
Confidence 422 1 346888999743 33456 999999998754 6666554 343221 111122356777777777654
No 19
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.02 E-value=1.8e-10 Score=96.14 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=43.7
Q ss_pred cCcceeeecC--cccccccccccccchhhhhcccccccccccCCCccccccCCCCCC
Q 045475 538 SNVHQILKGG--ECSSFKMEYISEFDKRLQEESASEDRSCHEASPAIDESQRGPGSH 592 (662)
Q Consensus 538 ~~~~~~vq~~--~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 592 (662)
.....||||| .|+||| .||+.... ..+|+.|.|.||+++..++|..||+.
T Consensus 13 ~~~~~WVQCd~p~C~KWR---~LP~~~~~--~~lpd~W~C~mN~d~~~~~Cs~pEE~ 64 (69)
T 2e61_A 13 GQCLVWVQCSFPNCGKWR---RLCGNIDP--SVLPDNWSCDQNTDVQYNRCDIPEET 64 (69)
T ss_dssp CCCCCEEECSSTTTCCEE---ECCSSCCT--TTSCTTCCGGGCSCGGGCSSSSCCCC
T ss_pred CCCCeEEEeCccccCccc---CCcccccc--ccCCCcCEeCCCCCCccCCCCCCccc
Confidence 3568999999 999999 88886544 45999999999999999999999986
No 20
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=98.99 E-value=1.8e-10 Score=102.39 Aligned_cols=51 Identities=10% Similarity=0.033 Sum_probs=44.2
Q ss_pred cCcceeeecCcccccccccccccchhhhhcccccccccccCCCccccccCCCCCC
Q 045475 538 SNVHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHEASPAIDESQRGPGSH 592 (662)
Q Consensus 538 ~~~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 592 (662)
....+|||||.|+||| .+|+... +..++|+.|+|.|||++..++|+.||+.
T Consensus 23 ~~~~~WVQCD~C~KWR---rLP~~~~-~~~~~pd~W~C~mN~D~~~nsCs~PEE~ 73 (100)
T 2l7p_A 23 STESAWVRCDDCFKWR---RIPASVV-GSIDESSRWICMNNSDKRFADCSKSQEM 73 (100)
T ss_dssp SSSSEEEECTTTCCEE---EECHHHH-TTSTTSSCCCGGGSSCSSSCSTTSCCSS
T ss_pred CCCCeEEeeCCCCccc---cCChhHc-cccCCCCCceeCCCCCCCCCCCCCccCC
Confidence 3568999999999999 8887643 3456899999999999999999999985
No 21
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.80 E-value=1.6e-08 Score=101.53 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=72.5
Q ss_pred ccceeeeeChhhh-hhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHH----
Q 045475 113 VGMDHLRVHPKFL-HSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKM---- 186 (662)
Q Consensus 113 ~~~~~~~~~p~fL-~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel---- 186 (662)
.++.|++-.|..- -+.+. ..-+..++.||||||+|+..++ ++.|.|.|.. + ..|+|.|||.||+.+..
T Consensus 14 ~~le~vr~rPgmYiG~~~~-~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---~--g~i~V~DnGrGIp~~~~~~~~ 87 (220)
T 4duh_A 14 KGLDAVRKRPGMYIGDTDD-GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---D--NSVSVQDDGRGIPTGIHPEEG 87 (220)
T ss_dssp -CHHHHHHSTHHHHCCSSS-SHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---T--SCEEEEECSSCCCCSEETTTT
T ss_pred chhHHHHhCCceEECCCCC-cccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---C--CcEEEEECCcCcccccccccC
Confidence 4666777666542 33222 1355689999999999988776 8999888853 2 26999999999999863
Q ss_pred ----Hhhhh-ccccccccC---CCccCcccccccccccccCCEEEEEeeeCC
Q 045475 187 ----RQCMS-LGYSAKSKL---ANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 187 ----~~~~~-~G~S~K~~~---~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
+-+|. +..++|-.+ ..+.|..|+|++ +.-.+...+.|.+++.+
T Consensus 88 ~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~s-vvNAlS~~l~v~v~r~g 138 (220)
T 4duh_A 88 VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS-VVNALSQKLELVIQREG 138 (220)
T ss_dssp EEHHHHHHHSTTCSSCCCTTC--------CCCHH-HHHHTEEEEEEEEEETT
T ss_pred cchhhheeeecccCCCcCCCccccccCccceecc-hhcccccceEEEEEECC
Confidence 33453 444444321 257899999985 45568889999998765
No 22
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.76 E-value=4.6e-09 Score=103.94 Aligned_cols=89 Identities=33% Similarity=0.293 Sum_probs=56.4
Q ss_pred HHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHH--------HHhhh-hccccccccC---CC
Q 045475 136 LGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK--------MRQCM-SLGYSAKSKL---AN 202 (662)
Q Consensus 136 f~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee--------l~~~~-~~G~S~K~~~---~~ 202 (662)
..+|.||||||+||..++ |+.|.|.+.. ++ .|+|.|||.||+.++ ++.+| .+..++|-.+ ..
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~ 93 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILHA---DQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 93 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT---TS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-------------
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEeC---CC--EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccc
Confidence 479999999999998877 9999998852 23 799999999999988 34433 4555555321 24
Q ss_pred ccCcccccccccccccCCEEEEEeeeCC
Q 045475 203 TIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 203 ~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
+.|..|.|+++ ...+...++|.|++.+
T Consensus 94 s~GfrGeglss-inalS~~l~v~t~~~g 120 (201)
T 3fv5_A 94 SGGLHGVGISV-VNALSKRVEVNVRRDG 120 (201)
T ss_dssp --------CHH-HHHTEEEEEEEEEETT
T ss_pred cCcccceecch-hhcccceEEEEEEecC
Confidence 68999999954 4457779999999765
No 23
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.54 E-value=6.2e-08 Score=104.78 Aligned_cols=111 Identities=22% Similarity=0.298 Sum_probs=79.4
Q ss_pred ccceeeeeChhh-hhhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHH-----
Q 045475 113 VGMDHLRVHPKF-LHSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK----- 185 (662)
Q Consensus 113 ~~~~~~~~~p~f-L~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee----- 185 (662)
.++.|++.-|.. +-+.... +-+..+|.||||||+|+..++ |+.|.|.|.. ++ .|+|.|||.||+.+.
T Consensus 13 ~gle~vrkRPgmYiGst~~~-~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~~~~~~ 86 (391)
T 1ei1_A 13 KGLDAVRKRPGMYIGDTDDG-TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---DN--SVSVQDDGRGIPTGIHPEEG 86 (391)
T ss_dssp CTTHHHHHCTHHHHCCSSSS-HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---TS--CEEEEECSSCCCCSBCTTTS
T ss_pred chhHHHHcCCCeEECCCCCC-cCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---CC--EEEEEECCCCcccCcccccC
Confidence 456666666643 2222221 245689999999999998877 9999988863 23 899999999999988
Q ss_pred ---HHhhhh-ccccccccC---CCccCcccccccccccccCCEEEEEeeeCC
Q 045475 186 ---MRQCMS-LGYSAKSKL---ANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 186 ---l~~~~~-~G~S~K~~~---~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
++-+|. +..++|-.+ ..+.|..|+|+++ .-.++..++|.|++.+
T Consensus 87 ~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~-vnalS~~l~v~~~r~g 137 (391)
T 1ei1_A 87 VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV-VNALSQKLELVIQREG 137 (391)
T ss_dssp SBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHH-HHHTEEEEEEEEEETT
T ss_pred cchHHHhheeccccCCcCCCcccccCCccccchHH-HHHhcCeEEEEEEeCC
Confidence 444665 555555321 2478999999854 4557778999998754
No 24
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.50 E-value=8.7e-08 Score=103.61 Aligned_cols=107 Identities=30% Similarity=0.339 Sum_probs=77.5
Q ss_pred ccceeeeeChh-hhhhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHH-----
Q 045475 113 VGMDHLRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK----- 185 (662)
Q Consensus 113 ~~~~~~~~~p~-fL~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee----- 185 (662)
.++.|++.-|. |+-+.+. -.+|.||||||+|+..++ |+.|.|.|.. ++ .|+|.|||.||+.++
T Consensus 14 ~gle~vr~RPgmYiGs~~~-----~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~~~~~~ 83 (390)
T 1s16_A 14 TGLEPVRRRPGMYTDTTRP-----NHLGQEVIDNSVDEALAGHAKRVDVILHA---DQ--SLEVIDDGRGMPVDIHPEEG 83 (390)
T ss_dssp CTTHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTCCSEEEEEECT---TS--CEEEEECSSCCCCSBCTTTC
T ss_pred chhHHHhhCCceeecCCcH-----HHHHHHHHHHHHHHHhcCCCCEEEEEEec---CC--EEEEEECCCCcCcccccccC
Confidence 45666666664 3333333 368999999999987777 8999998863 23 799999999999988
Q ss_pred ---HHhhhh-cccccccc---CCCccCcccccccccccccCCEEEEEeeeCC
Q 045475 186 ---MRQCMS-LGYSAKSK---LANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 186 ---l~~~~~-~G~S~K~~---~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
++.+|. +..++|-. -..+.|..|+|++ +.-.+...++|.|++.+
T Consensus 84 ~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls-~vnalS~~l~v~~~r~g 134 (390)
T 1s16_A 84 VPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS-VVNALSKRVEVNVRRDG 134 (390)
T ss_dssp SBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHH-HHHHTEEEEEEEEEETT
T ss_pred cchhhheeeeecccCCcCCCcccccCCccccchH-HHHHhhcccEEEEEECC
Confidence 666665 45555432 1246899999985 44567788999998754
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.33 E-value=8.4e-07 Score=98.08 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=70.3
Q ss_pred hhHHHHHHHHhccchhhhhcCCc--eEEEEEEecC-CCCeeEEEEEECCCCCCHHHHHhhhhc-cccccccCCCccCccc
Q 045475 133 KWALGAFAELLDNSLDEVCNGAT--YVQVDLLKNK-TDGTHMLLVEDNGGGMTPDKMRQCMSL-GYSAKSKLANTIGQYG 208 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt--~V~I~i~~~~-~~g~~~L~I~DNG~GM~~eel~~~~~~-G~S~K~~~~~~IG~fG 208 (662)
.....+|.|||+||+||...+.. .|.|.+.... .++...|.|.|||.||+++++..+|.. ..++|.......|..|
T Consensus 31 ~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~G 110 (471)
T 1mu5_A 31 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYG 110 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCce
Confidence 45568999999999997433211 7888876531 124568999999999999999999874 4555543335678899
Q ss_pred ccccc---cccccCCE-EEEEeeeCC
Q 045475 209 NGFKT---STMRLGAD-VIVFSRCQG 230 (662)
Q Consensus 209 ~GlKs---As~rlg~~-v~V~Sk~~g 230 (662)
+||.. .+-.+|+. +.|.|+..+
T Consensus 111 LGL~iv~~l~~~~gG~~i~v~S~~~~ 136 (471)
T 1mu5_A 111 LGVKAAVLYSQMHQDKPIEIETSPVN 136 (471)
T ss_dssp TTHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred eeHHHHHHHHHHhCCCceeEEEecCC
Confidence 99843 33456777 999998764
No 26
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.31 E-value=5.1e-07 Score=91.03 Aligned_cols=122 Identities=24% Similarity=0.268 Sum_probs=75.0
Q ss_pred ccCCCCCCCCCCccCcccceeeeeChhhh-hhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEE
Q 045475 97 AGDYEGGNAGDSLSNSVGMDHLRVHPKFL-HSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLV 174 (662)
Q Consensus 97 ag~~~~~~~~~~~~~~~~~~~~~~~p~fL-~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I 174 (662)
+.+|++.... .-.++.|++..|..- -+.+ ..-+..++.||||||+|+..++ ++.|.|.+.. + ..|+|
T Consensus 8 ~~~y~~~~i~----~l~~le~vr~RPgmYiGs~~--~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---~--g~i~V 76 (226)
T 4emv_A 8 INNYNDDAIQ----VLEGLDAVRKRPGMYIGSTD--GAGLHHLVWEIVDNAVDEALSGFGDRIDVTINK---D--GSLTV 76 (226)
T ss_dssp ---------C----CCBCTHHHHHCHHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEE
T ss_pred hhcCChhhcE----EcchhHHHhhCCceEEcCCC--cccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---C--CeEEE
Confidence 3456664421 345677777777543 3322 2333478899999999998765 7888888753 2 36999
Q ss_pred EECCCCCCHHH-------HHhhhh-ccccccccC---CCccCcccccccccccccCCEEEEEeeeCC
Q 045475 175 EDNGGGMTPDK-------MRQCMS-LGYSAKSKL---ANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 175 ~DNG~GM~~ee-------l~~~~~-~G~S~K~~~---~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
.|||.||+.+. ++-+|. +..++|-.+ ..+.|..|+|++ +.-.+...+.|.+++.+
T Consensus 77 ~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~s-vvNALS~~l~v~v~r~g 142 (226)
T 4emv_A 77 QDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSS-VVNALSSWLEVEITRDG 142 (226)
T ss_dssp EECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHH-HHHHTEEEEEEEEEETT
T ss_pred EEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccch-hhhhcccceEEEEEeCC
Confidence 99999999988 666664 555555321 357899999985 45568889999998865
No 27
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.28 E-value=5.8e-07 Score=96.53 Aligned_cols=88 Identities=16% Similarity=0.050 Sum_probs=62.7
Q ss_pred hhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCC---CccCccc
Q 045475 133 KWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLA---NTIGQYG 208 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~---~~IG~fG 208 (662)
.-+..++.||||||+||..++ |+.|.|.|.. +| .|+|.|||.||+. ++. |.+..++|-.+. ...+.-|
T Consensus 29 ~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~---~g--~I~V~DnGrGIp~-e~v--~~lhagsKf~~~~~~~~y~vsG 100 (369)
T 3cwv_A 29 YGLHHLVYFLLDVAYEEARRGECRDVVLEVGG---DG--SIALFCTSRTVTA-ENL--VRVATGAGFLGRPPGDGWGWDS 100 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---TS--CEEEEEEESSCCH-HHH--HHHHTTTTGGGSSCCCSTTTTS
T ss_pred chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC---CC--EEEEEECCCCcCH-hHe--eeeecCCCcCCCcccccccccC
Confidence 456689999999999988765 8999998863 23 7999999999999 332 344444543221 2333446
Q ss_pred ccccccccccCCEEEEEeeeCC
Q 045475 209 NGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 209 ~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
|+ ++.-.+...++|.|++.+
T Consensus 101 -Gl-s~vnalSs~l~v~t~r~g 120 (369)
T 3cwv_A 101 -ML-VVSLALSSRYQVDIWADG 120 (369)
T ss_dssp -SH-HHHHHTEEEEEEEEEETT
T ss_pred -HH-HHHHHhhceEEEEEEECC
Confidence 76 445567789999999765
No 28
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.27 E-value=1.1e-06 Score=95.50 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=67.6
Q ss_pred HHHHHHHHhccchhhh-hcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHH--------HHhhhh-cccccccc---C
Q 045475 135 ALGAFAELLDNSLDEV-CNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK--------MRQCMS-LGYSAKSK---L 200 (662)
Q Consensus 135 pf~AIaELVDNAiDA~-~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee--------l~~~~~-~G~S~K~~---~ 200 (662)
...++.||||||+|+. .++ ++.|.|.|..+ ...|+|.|||.||+.+. ++-+|. +..++|-. -
T Consensus 53 L~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~----~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~y 128 (400)
T 1zxm_A 53 LYKIFDEILVNAADNKQRDPKMSCIRVTIDPE----NNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEK 128 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT----TTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGC
T ss_pred HHHHHHHHHhhHHhHHhhcCCCceEEEEEECC----CCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcc
Confidence 3479999999999996 334 88898888742 25899999999999987 555665 55555532 1
Q ss_pred CCccCcccccccccccccCCEEEEEeeeC
Q 045475 201 ANTIGQYGNGFKTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 201 ~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~ 229 (662)
..+.|..|+|++ +.-.+...++|.+++.
T Consensus 129 kvSgGlhGvGls-vVnAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 129 KVTGGRNGYGAK-LCNIFSTKFTVETASR 156 (400)
T ss_dssp CCCSCCSSCHHH-HHHHTEEEEEEEEEET
T ss_pred cccCCcccccee-eeEEeccceEEEEecC
Confidence 247899999985 4556888999999874
No 29
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.23 E-value=1e-06 Score=98.68 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=70.6
Q ss_pred hhHHHHHHHHhccchhhhhcCCc--eEEEEEEecC-CCCeeEEEEEECCCCCCHHHHHhhhhc-cccccccCCCccCccc
Q 045475 133 KWALGAFAELLDNSLDEVCNGAT--YVQVDLLKNK-TDGTHMLLVEDNGGGMTPDKMRQCMSL-GYSAKSKLANTIGQYG 208 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt--~V~I~i~~~~-~~g~~~L~I~DNG~GM~~eel~~~~~~-G~S~K~~~~~~IG~fG 208 (662)
.....+|.|||+||+||...+.. .|.|.+.... .++...|.|.|||.||+++++..+|.. .+++|.......|..|
T Consensus 30 ~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~G 109 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYG 109 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCcc
Confidence 45558999999999997433211 6888776531 124568999999999999999999874 3555543335678899
Q ss_pred cccc---ccccccCCE-EEEEeeeCC
Q 045475 209 NGFK---TSTMRLGAD-VIVFSRCQG 230 (662)
Q Consensus 209 ~GlK---sAs~rlg~~-v~V~Sk~~g 230 (662)
+||. ..+-.+|+. +.|.|+..+
T Consensus 110 LGLsiv~~l~~~~gG~~I~V~S~~~~ 135 (530)
T 2zbk_B 110 LGVKAAVLYSQMHQDKPIEIETSPVN 135 (530)
T ss_dssp SHHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred chHHHHHHHHHHhCCCceEEEEecCC
Confidence 9984 333456777 999998754
No 30
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=98.20 E-value=1.3e-06 Score=86.11 Aligned_cols=93 Identities=27% Similarity=0.327 Sum_probs=64.1
Q ss_pred HHHHHHHHhccchhhhhcCC--ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 135 ALGAFAELLDNSLDEVCNGA--TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agA--t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
...+|.+||+||+.+...+. ..|.|.+... ++...|.|.|||.||+++.+.++|...++.+.......+-.|+||
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ 216 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK--DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLA 216 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE--TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHH
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEecC--CCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHH
Confidence 44799999999999743322 3466666543 356789999999999999999999876655432112223468887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+.+.|.|...
T Consensus 217 i~~~iv~~~gG~i~v~s~~~ 236 (258)
T 2c2a_A 217 ITKEIVELHGGRIWVESEVG 236 (258)
T ss_dssp HHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 455567899999988753
No 31
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.17 E-value=9e-07 Score=95.62 Aligned_cols=110 Identities=30% Similarity=0.348 Sum_probs=75.1
Q ss_pred ccceeeeeChhh-hhhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHh--
Q 045475 113 VGMDHLRVHPKF-LHSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQ-- 188 (662)
Q Consensus 113 ~~~~~~~~~p~f-L~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~-- 188 (662)
.++.+++..|.. +-+.. ..-....|.|||+||+|+..++ ++.|.|.+.. + ..|+|.|||.||+.+++.+
T Consensus 12 ~~le~vr~rpgmyiGs~~--~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---~--~~i~V~DnG~GIp~~~~~~~~ 84 (390)
T 1kij_A 12 KGLEGVRHRPAMYIGGTG--VEGYHHLFKEILDNAVDEALAGYATEILVRLNE---D--GSLTVEDNGRGIPVDLMPEEG 84 (390)
T ss_dssp CTTHHHHHCTHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---T--SCEEEEECSSCCCCSEETTTT
T ss_pred chhHHHhcCCCcEEccCC--cchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---C--CEEEEEEcCCCCCHHHhhhcc
Confidence 456667766653 32222 1233378999999999986544 7888888753 2 3899999999999998765
Q ss_pred ------hhh-cccccccc---CCCccCcccccccccccccCCEEEEEeeeCC
Q 045475 189 ------CMS-LGYSAKSK---LANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 189 ------~~~-~G~S~K~~---~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
+|. +...+|-. ...+.|..|+|++ ++..+...+.|.|++.+
T Consensus 85 ~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls-~v~als~~~~v~t~~~g 135 (390)
T 1kij_A 85 KPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGAS-VVNALSEWTVVEVFREG 135 (390)
T ss_dssp EEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHH-HHHHTEEEEEEEEEETT
T ss_pred ccchhhheeeeeecccccCccccccCCCCCccee-eecccccceEEEEecCC
Confidence 564 33333321 1235789999995 44568888999999754
No 32
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=98.13 E-value=4.5e-06 Score=88.84 Aligned_cols=93 Identities=18% Similarity=0.301 Sum_probs=67.4
Q ss_pred HHHHHHHHhccchhhhhcCC------ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccccccc-----CCCc
Q 045475 135 ALGAFAELLDNSLDEVCNGA------TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSK-----LANT 203 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agA------t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~-----~~~~ 203 (662)
...+|.+||+||+.+...+. ..|.|.+... ++...|.|.|||.||+++++.++|...++.+.. ....
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~ 309 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVALG--EEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTP 309 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC----------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeC--CCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCC
Confidence 34799999999999875544 2588888653 356789999999999999999999977776532 2233
Q ss_pred cCcccccc---cccccccCCEEEEEeeeC
Q 045475 204 IGQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 204 IG~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
.+-+|+|| |...-.+|+++.|.|...
T Consensus 310 ~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2btz_A 310 LAGFGYGLPISRLYAKYFQGDLQLFSMEG 338 (394)
T ss_dssp ----CCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 55678998 555567899999998743
No 33
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.12 E-value=5.7e-06 Score=74.63 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=64.4
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
...++.+||+||+.+. ...|.|.+... ++...|.|.|||.||+++.+.++|..+++.+.. -+..|+||
T Consensus 45 l~~il~nLl~NAi~~~---~~~i~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~----~~g~GlGL~i~ 115 (152)
T 1id0_A 45 FVEVMGNVLDNACKYC---LEFVEISARQT--DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAVA 115 (152)
T ss_dssp HHHHHHHHHHHHHHHC---SSEEEEEEEEC--SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHHH
T ss_pred HHHHHHHHHHHHHHhC---cCeEEEEEEec--CCEEEEEEEeCCCCcCHHHHHHHhccceeccCC----CCCcccCHHHH
Confidence 4479999999999972 23777777653 356789999999999999999999876665422 13468887
Q ss_pred cccccccCCEEEEEeee
Q 045475 212 KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~ 228 (662)
+...-.+|+.+.+.+..
T Consensus 116 ~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 116 REITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHTTCEEEEEECT
T ss_pred HHHHHHcCCEEEEEeCC
Confidence 44556789999998764
No 34
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.12 E-value=1.5e-06 Score=94.49 Aligned_cols=107 Identities=28% Similarity=0.387 Sum_probs=64.5
Q ss_pred ccceeeeeChh-hhhhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHH-----
Q 045475 113 VGMDHLRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK----- 185 (662)
Q Consensus 113 ~~~~~~~~~p~-fL~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee----- 185 (662)
.|+.+++.-|. |+-+.+. ...+.||||||+|+..+| ++.|.|.|.. + ..|+|.|||.||+.+.
T Consensus 33 ~glE~VRkRPgMYiGst~~-----~hlv~EivdNsiDea~ag~~~~I~V~i~~---d--gsI~V~DnGrGIPv~~h~~~~ 102 (408)
T 3lnu_A 33 SGLDPVKRRPGMYTDTARP-----NHLAQEVIDNSVDEALAGHAKQIEVTLYK---D--GSCEVSDDGRGMPVDIHPEEK 102 (408)
T ss_dssp -CCHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTSCCEEEEEECT---T--SCEEEEECSSCCCCSBCTTTC
T ss_pred cccHHHhcCCccEECCCCc-----chhhHHHHHHHHHHhhcCCCceEEEEEeC---C--CeEEEEEcCCCCCcccccccC
Confidence 45566665553 3333222 468999999999998776 8888888853 2 2699999999999976
Q ss_pred ---HHhhhh-ccccccccC---CCccCcccccccccccccCCEEEEEeeeCC
Q 045475 186 ---MRQCMS-LGYSAKSKL---ANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 186 ---l~~~~~-~G~S~K~~~---~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
++-+|. +...+|-.+ ..+.|..|+|++ +.-.|...+.|.+++.|
T Consensus 103 ~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~s-vVNALS~~l~v~v~rdG 153 (408)
T 3lnu_A 103 IPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS-VVNALSTKVELFIKREG 153 (408)
T ss_dssp SBHHHHHHHCC--------------------CHH-HHHHTEEEEEEEEEETT
T ss_pred CcchheEEEecccCCCcCCCceeecCCccccccc-eehhccCeEEEEEEECC
Confidence 334453 444444221 256899999985 55668889999999765
No 35
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=98.11 E-value=5.5e-06 Score=88.62 Aligned_cols=94 Identities=18% Similarity=0.292 Sum_probs=71.2
Q ss_pred hHHHHHHHHhccchhhhhcCC------ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccccccc------CC
Q 045475 134 WALGAFAELLDNSLDEVCNGA------TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSK------LA 201 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agA------t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~------~~ 201 (662)
....+|.+||+||+.+...+. ..|.|.+... ++...|.|.|||.||+++++.++|...++.+.. ..
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~ 320 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLG--NEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRA 320 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeC--CCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCC
Confidence 344799999999999864432 2688887653 356789999999999999999999877766532 12
Q ss_pred CccCcccccc---cccccccCCEEEEEeeeC
Q 045475 202 NTIGQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 202 ~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
...+-+|+|| |...-.+|+++.|.|...
T Consensus 321 ~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g 351 (407)
T 2q8g_A 321 VPLAGFGYGLPISRLYAQYFQGDLKLYSLEG 351 (407)
T ss_dssp CCSSCTTCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCcCCCHHHHHHHHHHhCCEEEEEEcCC
Confidence 3456789998 455567899999998753
No 36
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=98.08 E-value=5.7e-06 Score=88.16 Aligned_cols=94 Identities=17% Similarity=0.290 Sum_probs=71.1
Q ss_pred hHHHHHHHHhccchhhhhcCC------ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccccccc------CC
Q 045475 134 WALGAFAELLDNSLDEVCNGA------TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSK------LA 201 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agA------t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~------~~ 201 (662)
....+|.+||+||+.+...+. ..|.|.+... ++...|.|.|||.||+++++.++|...++.+.. ..
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~ 307 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLG--KEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRN 307 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEEC--SSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------C
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeC--CCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCC
Confidence 344799999999999864332 2588888653 356789999999999999999999977776532 22
Q ss_pred CccCcccccc---cccccccCCEEEEEeeeC
Q 045475 202 NTIGQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 202 ~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
...+-+|+|| |...-.+|+++.|.|...
T Consensus 308 ~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2e0a_A 308 APLAGFGYGLPISRLYAKYFQGDLNLYSLSG 338 (394)
T ss_dssp CCSSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCcccCHHHHHHHHHHhCCEEEEEecCC
Confidence 3456678998 555567899999998753
No 37
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=98.08 E-value=4.5e-06 Score=78.70 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=65.4
Q ss_pred HHHHHHHhccchhhhh-----------cCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHH------------------
Q 045475 136 LGAFAELLDNSLDEVC-----------NGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKM------------------ 186 (662)
Q Consensus 136 f~AIaELVDNAiDA~~-----------agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel------------------ 186 (662)
..+|.+||+||+.+.. .....|.|.+... ++...|.|.|||.||+++++
T Consensus 49 ~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~ 126 (189)
T 1i58_A 49 GEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATL 126 (189)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEec--CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhccc
Confidence 3579999999999741 2356788887654 35678999999999999987
Q ss_pred ------HhhhhccccccccCCCccCcccccc---cccccccCCEEEEEeee
Q 045475 187 ------RQCMSLGYSAKSKLANTIGQYGNGF---KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 187 ------~~~~~~G~S~K~~~~~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~ 228 (662)
.++|..+++++... ...+..|+|| +...-.+|+.+.|.|..
T Consensus 127 ~~~~~~~~if~~~~~~~~~~-~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~ 176 (189)
T 1i58_A 127 SDQEILNFLFVPGFSTKEKV-SEVSGRGVGMDVVKNVVESLNGSISIESEK 176 (189)
T ss_dssp CHHHHHGGGGSTTCSHHHHH-HGGGTCCCHHHHHHHHHHHTTCEEEEEEET
T ss_pred chhhhHHHhcCCcccccccC-CCCCCCccCHHHHHHHHHHcCCEEEEEeCC
Confidence 66777777765321 1223468887 34455789999998874
No 38
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=98.07 E-value=8e-06 Score=73.82 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=60.3
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
...+|.+||+||+.+ +.+..|.|.+... ++...|.|.|||.||+++++.++|...++.... .-+-.|+||
T Consensus 47 l~~il~nLl~NA~~~--~~~~~I~i~~~~~--~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~---~~~g~GlGL~i~ 119 (150)
T 1ysr_A 47 LRLAVDNAIANAVKH--GGATLVQLSAVSS--RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA---SHSGSGLGLALV 119 (150)
T ss_dssp HHHHHHHHHHHHHHT--TCCSEEEEEEEEE--TTEEEEEEEESSSCCCGGGHHHHHTSCC--------------CCCHHH
T ss_pred HHHHHHHHHHHHHhc--CCCcEEEEEEEec--CCEEEEEEEECCCCCCHHHHHHHhcccccCCCC---CCCCCCcCHHHH
Confidence 447899999999997 3344777777654 356789999999999999999998865543211 123458887
Q ss_pred cccccccCCEEEEEeee
Q 045475 212 KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~ 228 (662)
+...-.+|+.+.+.+..
T Consensus 120 ~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 120 AQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHTTCEEEEEECT
T ss_pred HHHHHHcCCEEEEeecC
Confidence 44556789999998864
No 39
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=98.06 E-value=3.9e-06 Score=78.32 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=64.7
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
...+|.+||+||+.+.. ....|.|.+.....++...|.|.|||.||+.+.+.++|...++.........+..|+||
T Consensus 44 l~~il~nLl~NAi~~~~-~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv 122 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSP-EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIA 122 (177)
T ss_dssp HHHHHHHHHHHHHHTCC-TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHH
Confidence 34799999999999742 23456666643334567789999999999999999998866654322222334568887
Q ss_pred cccccccCCEEEEEeeeC
Q 045475 212 KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+.+.+.+...
T Consensus 123 ~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 123 KEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHTTCCEEEEEETT
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 344467889999887753
No 40
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=98.04 E-value=6.7e-06 Score=88.52 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=66.8
Q ss_pred HHHHHHHHhccchhhhhcC-------CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccccccc------CC
Q 045475 135 ALGAFAELLDNSLDEVCNG-------ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSK------LA 201 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~ag-------At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~------~~ 201 (662)
...+|.+||+||+.+...+ ...|.|.+... ++...|.|.|||.||+++++.++|...++.+.. ..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~ 331 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLG--KEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRA 331 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHGGGGCTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeC--CCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCC
Confidence 3479999999999986433 23688888654 356789999999999999999999877766532 12
Q ss_pred CccCcccccc---cccccccCCEEEEEeeeC
Q 045475 202 NTIGQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 202 ~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
...+-+|+|| |...-.+|+++.|.|...
T Consensus 332 ~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g 362 (419)
T 1y8o_A 332 APLAGFGYGLPISRLYARYFQGDLKLYSMEG 362 (419)
T ss_dssp -CC--CTTHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCcCCeecCHHHHHHHHHHhCCEEEEEecCC
Confidence 2355678998 555567899999999853
No 41
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=98.01 E-value=8.1e-06 Score=74.80 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=66.3
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc--
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
....+|.+||+||+.+. ...|.|.+... ++...|.|.|||.||+.+++.++|...++.+.. ..-+-.|+||
T Consensus 47 ~l~~il~nll~NAik~~---~~~I~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~--~~~~g~GlGL~i 119 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYG---NGWIKVSSGTE--PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGLGLAI 119 (161)
T ss_dssp HHHHHHHHHHHHHHTTC---CSCEEEEEEEE--TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC--CCCCCCSCCCCT
T ss_pred HHHHHHHHHHHHHHhhc---CCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC--CCCCCcccCHHH
Confidence 34479999999999962 66788887654 356789999999999999999999876665432 1224568887
Q ss_pred -cccccccCCEEEEEeee
Q 045475 212 -KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~ 228 (662)
+...-.+|+.+.+.+..
T Consensus 120 ~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 120 VQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp THHHHHHHTSEEEEEEET
T ss_pred HHHHHHHcCCEEEEEECC
Confidence 34455689999998874
No 42
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=98.00 E-value=5e-06 Score=75.13 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=49.8
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCC----------eeEEEEEECCCCCCHHHHHhhhhccccccccCCCcc
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDG----------THMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTI 204 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g----------~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~I 204 (662)
...+|.+||+||+.+.......|.|.+.... + ...|.|.|||.||+++++.++|...++++.
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~--~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~------ 120 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAF--QLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE------ 120 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE--EEEETTEEEEEEEEEEEEEECTTC-----------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccc--cccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC------
Confidence 4479999999999985432567777776532 2 467999999999999999999987766542
Q ss_pred Ccccccc---cccccccCCEEEEEeee
Q 045475 205 GQYGNGF---KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 205 G~fG~Gl---KsAs~rlg~~v~V~Sk~ 228 (662)
+-.|+|| +...-.+|+.+.+.+..
T Consensus 121 ~g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 121 GGTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp ---CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 2358887 44456789999998764
No 43
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.98 E-value=2.2e-05 Score=77.18 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=65.7
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
...+|.+||+||+++... ...|.|.+... ++...|.|.|||.||+++.+.++|...++++. +-.|+||
T Consensus 156 l~~il~nLl~NA~~~~~~-~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~------~g~GlGL~i~ 226 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPP-GGRVTLSARRA--LGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR------GGPGLGLALV 226 (268)
T ss_dssp HHHHHHHHHHHHHHHSCT-TCEEEEEEEEC--SSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS------CCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CCEEEEEEEec--CCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC------CCCcccHHHH
Confidence 447999999999997422 25788877654 46778999999999999999999987776542 2358887
Q ss_pred cccccccCCEEEEEeee
Q 045475 212 KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~ 228 (662)
+...-.+|+.+.|.+..
T Consensus 227 ~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 227 KALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHTTCEEEEEECT
T ss_pred HHHHHHcCCEEEEEecC
Confidence 45556789999998874
No 44
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.98 E-value=1.6e-05 Score=76.59 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=67.0
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc--
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
....+|.+||+||+.+.. .+..|.|.+... ++...|.|.|||.||+++.+.++|..+++.+.. +-.|+||
T Consensus 123 ~l~~il~nLl~NA~~~~~-~~~~i~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~-----~g~GlGL~i 194 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMP-NGGTLQVYVSID--NGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV-----KGTGLGMMV 194 (244)
T ss_dssp HHHHHHHHHHHHHHHTCT-TCEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG-----GCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-CCCeEEEEEEEe--CCEEEEEEEecCCCCCHHHHHHHhcccccCCCC-----CCcchhHHH
Confidence 345799999999999732 356788777654 467789999999999999999999877766421 2358887
Q ss_pred -cccccccCCEEEEEeeeC
Q 045475 212 -KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+.+.+.+...
T Consensus 195 ~~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 195 VYRIIESMNGTIRIESEIH 213 (244)
T ss_dssp HHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 444567899999988743
No 45
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.97 E-value=1.2e-05 Score=72.09 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=63.6
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccccc
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKT 213 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKs 213 (662)
....+|.+||+||+.+.. ....|.|.+... ++...|.|.|||.||+++++.++|...++++. +-.|+||..
T Consensus 47 ~l~~il~nll~NAi~~~~-~~~~I~i~~~~~--~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~------~g~GlGL~i 117 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATG-ENGKIKITSEDM--YTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------QGTGLGLSI 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCEEEEEEEEC--SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------CCCCSHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCCEEEEEEEec--CCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC------CCCCcCHHH
Confidence 344799999999999742 356788877653 45678999999999999999999987666542 235888743
Q ss_pred ---ccc-ccCCEEEEEee
Q 045475 214 ---STM-RLGADVIVFSR 227 (662)
Q Consensus 214 ---As~-rlg~~v~V~Sk 227 (662)
..- .+|+.+.+.+.
T Consensus 118 ~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 118 CRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHhCCcEEEEecC
Confidence 333 68999988776
No 46
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.97 E-value=6.6e-06 Score=87.24 Aligned_cols=93 Identities=18% Similarity=0.309 Sum_probs=69.3
Q ss_pred hHHHHHHHHhccchhhhhcCC-------ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccC------
Q 045475 134 WALGAFAELLDNSLDEVCNGA-------TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKL------ 200 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agA-------t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~------ 200 (662)
....+|.+||+||+.+...+. ..|.|.+... ++...|.|.|||.||+++++.++|...++.+...
T Consensus 238 ~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~ 315 (388)
T 1gkz_A 238 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANN--DVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRI 315 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEEC--SSEEEEEEECCSCCCCTTTTTTTTSTTCCCC---------
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeC--CCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCccccccc
Confidence 344799999999999875442 2688888654 3567899999999999999999998777665421
Q ss_pred --------------CCccCcccccc---cccccccCCEEEEEeee
Q 045475 201 --------------ANTIGQYGNGF---KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 201 --------------~~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~ 228 (662)
....+-+|+|| |...-.+|+++.|.|..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 316 SPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp ----------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 12235678888 45556789999999874
No 47
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=97.89 E-value=7.9e-06 Score=93.12 Aligned_cols=97 Identities=19% Similarity=0.317 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhccchhhhhcC--CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcc-ccccc-cCCCccCccc
Q 045475 133 KWALGAFAELLDNSLDEVCNG--ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLG-YSAKS-KLANTIGQYG 208 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~ag--At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G-~S~K~-~~~~~IG~fG 208 (662)
..+..+|.|||+||+||...+ ...|.|.+..+. .+...|.|.|||.||+.+++..+|... .+++. ......|..|
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~-~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~G 114 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTG-PDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQG 114 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEET-TTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECC-CcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCce
Confidence 455589999999999985422 237888776531 134689999999999999999998643 33332 1224568899
Q ss_pred cccccc---ccccCCE-EEEEeeeCC
Q 045475 209 NGFKTS---TMRLGAD-VIVFSRCQG 230 (662)
Q Consensus 209 ~GlKsA---s~rlg~~-v~V~Sk~~g 230 (662)
+||..+ +-.+++. +.|.|+..+
T Consensus 115 lGLsiv~~ls~~~gG~~I~V~S~~~g 140 (621)
T 2q2e_B 115 IGISAAVLYAQMTAGRHTKILSKTSP 140 (621)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEECSS
T ss_pred echhhhhHHHHHhCCCceeEEeeccC
Confidence 998432 2344555 788888765
No 48
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.88 E-value=2.8e-05 Score=82.89 Aligned_cols=90 Identities=21% Similarity=0.306 Sum_probs=62.8
Q ss_pred HHHHHHhccchhhhh-----------cCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHH-------------------
Q 045475 137 GAFAELLDNSLDEVC-----------NGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKM------------------- 186 (662)
Q Consensus 137 ~AIaELVDNAiDA~~-----------agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel------------------- 186 (662)
.++.+||.||+++.. .....|.|.+... ++...|.|.|||.||+++.+
T Consensus 109 ~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~--~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~ 186 (379)
T 1b3q_A 109 EPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 186 (379)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEE--TTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEe--CCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCC
Confidence 579999999999731 1245677777653 46788999999999999988
Q ss_pred -----HhhhhccccccccCCCccCcccccc---cccccccCCEEEEEeeeC
Q 045475 187 -----RQCMSLGYSAKSKLANTIGQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 187 -----~~~~~~G~S~K~~~~~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
..+|..|++++... ...+-.|+|| |...-.+|+.+.|.|...
T Consensus 187 ~~~~~~~iF~p~fst~~~~-~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 187 DQEILNFLFVPGFSTKEKV-SEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp THHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHhcCCCCccCCcc-CCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 66788888886432 3345568998 556668999999999853
No 49
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.81 E-value=2.7e-05 Score=69.30 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=55.7
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
.+.++.|||+||+.+ +.+..|.|.+... ++...|.|.|||.||+++.+ +-.|+||
T Consensus 41 l~~il~nll~Na~k~--~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~ 98 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKH--SQAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS------------------FSKGHGLLGM 98 (128)
T ss_dssp HHHHHHHHHHHHHHH--TCCSEEEEEEEEE--TTEEEEEEEESSCCCSCSSC------------------CCTTSHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCCcEEEEEEEEe--CCEEEEEEEECCcCcCcccC------------------CCCCccHHHH
Confidence 346899999999997 4567888888764 35678999999999998765 1237887
Q ss_pred cccccccCCEEEEEeee
Q 045475 212 KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~ 228 (662)
+...-.+|+.+.+.|..
T Consensus 99 ~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 99 RERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHTTCEEEEECSS
T ss_pred HHHHHHcCCEEEEEeCC
Confidence 34445789999998875
No 50
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.77 E-value=1.4e-05 Score=75.91 Aligned_cols=86 Identities=26% Similarity=0.267 Sum_probs=43.4
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
...+|.+||+||+.+.. ....|.|.+.. . .|.|.|||.||+++.+.++|...++.+.. .-+-.|+||
T Consensus 118 l~~il~nLl~NAi~~~~-~~~~i~i~~~~----~--~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~~g~GlGL~i~ 187 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSP-QGSVVDVTLNA----D--NFIVRDNGPGVTPEALARIGERFYRPPGQ---TATGSGLGLSIV 187 (222)
T ss_dssp HHHHHHHHHHHHHHTCC-TTCEEEEEECS----S--EEEEECSCC-----------------------------CTHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCCeEEEEEcc----C--eEEEEECCCCCCHHHHHHHHhhhccCCCC---CCCcccccHHHH
Confidence 44789999999999732 23456665542 1 29999999999999999999866654321 223468887
Q ss_pred cccccccCCEEEEEeeeCC
Q 045475 212 KTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~~g 230 (662)
+...-.+|+.+.|.|...+
T Consensus 188 ~~i~~~~gG~i~i~s~~~~ 206 (222)
T 3jz3_A 188 QRIAKLHGMNVEFGNAEQG 206 (222)
T ss_dssp HHHHHHTTCEEECCBCTTS
T ss_pred HHHHHHcCCEEEEEcCCCC
Confidence 4555678999999887543
No 51
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.77 E-value=3.4e-05 Score=84.18 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=64.3
Q ss_pred HHHHHHHhccchhhh-hcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHH--------hhhh-ccccccccC---C
Q 045475 136 LGAFAELLDNSLDEV-CNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMR--------QCMS-LGYSAKSKL---A 201 (662)
Q Consensus 136 f~AIaELVDNAiDA~-~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~--------~~~~-~G~S~K~~~---~ 201 (662)
...|.|+||||+|+. .++ ++.|.|.|..+ ...|+|.|||.||+.+... -+|. +...+|-.+ .
T Consensus 66 ~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d----~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~yk 141 (418)
T 1pvg_A 66 FKIFDEILVNAADNKVRDPSMKRIDVNIHAE----EHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKK 141 (418)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEEEETT----TTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCC
T ss_pred HHHHHHHHhCHHHHHHhcCCCCEEEEEEECC----CCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCcee
Confidence 468999999999987 334 78899888742 2479999999999987632 2454 444444221 2
Q ss_pred CccCcccccccccccccCCEEEEEeee
Q 045475 202 NTIGQYGNGFKTSTMRLGADVIVFSRC 228 (662)
Q Consensus 202 ~~IG~fG~GlKsAs~rlg~~v~V~Sk~ 228 (662)
.+-|..|+|. +++-.|...+.|.+++
T Consensus 142 vSGGLhGVG~-SvVNALS~~l~V~v~r 167 (418)
T 1pvg_A 142 VTGGRNGYGA-KLCNIFSTEFILETAD 167 (418)
T ss_dssp CCSCCSSCHH-HHHHHTEEEEEEEEEE
T ss_pred ccCCccceee-eeeeeccceEEEEEEE
Confidence 4679999997 4666788999999986
No 52
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.68 E-value=7.4e-05 Score=71.30 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=51.7
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
.+.++.|||+||+.+ ++++.|.|.+..+ ++...|.|.|||.||+++.+ +-.|+||
T Consensus 131 l~~il~nll~Na~k~--~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~ 188 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKH--SQAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS------------------FSKGHGLLGM 188 (218)
T ss_dssp HHHHHHHHHHHHHHH--TCCSEEEEEEEEE--TTEEEEEEEESSCCCC--------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEEEEEe--CCEEEEEEEECCcCCCCCCC------------------CCCCCCHHHH
Confidence 346899999999997 4567888888764 46788999999999999876 1137887
Q ss_pred cccccccCCEEEEEeee
Q 045475 212 KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~ 228 (662)
+...-.+|+.+.|.|..
T Consensus 189 ~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 189 RERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHTTCEEEEECSS
T ss_pred HHHHHHcCCEEEEeCCC
Confidence 44556789999998876
No 53
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.65 E-value=3.4e-05 Score=78.30 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=62.4
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccc
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFK 212 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlK 212 (662)
.....+|.+||+||+.+.. .+..|.|.+... ++...|.|.|||.||+++.+.++|...++++.. -.|+||.
T Consensus 243 ~~l~~vl~nLl~NA~k~~~-~~~~i~i~~~~~--~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~------g~GlGL~ 313 (349)
T 3a0r_A 243 TRIKQVLINLVQNAIEATG-ENGKIKITSEDM--YTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ------GTGLGLS 313 (349)
T ss_dssp HHHHHHHHHHHTHHHHTTC-TTCCEEEEEEEE--TTEEEEEEEEESCCCCGGGGTTTSSSCCCC------------CCCT
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCEEEEEEEec--CCEEEEEEEECCCCCChHHHhhcCCCCccCCCC------CccchHH
Confidence 3455799999999999742 356788877654 457889999999999999999999977776531 2488873
Q ss_pred ---cccc-ccCCEEEEEee
Q 045475 213 ---TSTM-RLGADVIVFSR 227 (662)
Q Consensus 213 ---sAs~-rlg~~v~V~Sk 227 (662)
...- .+|+.+.+.+.
T Consensus 314 i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 314 ICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp HHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHhCCCEEEEEeC
Confidence 3333 68899888776
No 54
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.64 E-value=8.2e-05 Score=67.27 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=56.9
Q ss_pred hHHHHHHHHhccchhhhhcC--CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc
Q 045475 134 WALGAFAELLDNSLDEVCNG--ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~ag--At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl 211 (662)
....+|.|||+||+.+.... ...|.|.+... ++...|.|.|||.||+ .+.+++...++.+. ..+..|+||
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL 110 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE--DGVVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGF 110 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE--TTEEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe--CCEEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchH
Confidence 34479999999999963221 36788877654 3567899999999999 77888876666543 123458888
Q ss_pred cccccccCCEEEEEeee
Q 045475 212 KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~ 228 (662)
..+- ++...+.+.+..
T Consensus 111 ~iv~-~~~~~i~~~~~~ 126 (145)
T 1th8_A 111 TIME-NFMDEVIVESEV 126 (145)
T ss_dssp HHHH-HHSSEEEEEEET
T ss_pred HHHH-HHHheEEEEeCC
Confidence 5433 345577777654
No 55
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.60 E-value=7.6e-05 Score=65.61 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....++.|||+||+.+ +.+..|.|.+..+. + ..|.|.|||.||+++. .|+||
T Consensus 42 ~~l~~il~nll~NA~k~--~~~~~i~i~~~~~~--~-~~i~v~D~G~gi~~~~---------------------~GlGL~ 95 (129)
T 3zxo_A 42 DQAEAVVREAVSNAVRH--AAASTLTVRVKVDD--D-LCIEVTDNGRGMPDEF---------------------TGSGLT 95 (129)
T ss_dssp HHHHHHHHHHHHHCCCC--SSCCEEEEEEEESS--E-EEEEEEECCCCCTTTT---------------------CSHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCceEEEEEEEcC--C-EEEEEecCCCCCCccc---------------------CCcCHH
Confidence 34557899999999997 34678888887643 4 7899999999998765 38887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+.+.+.+...
T Consensus 96 i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 96 NLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHcCCEEEEeeCCC
Confidence 444567899999988754
No 56
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.57 E-value=4.6e-05 Score=75.24 Aligned_cols=81 Identities=25% Similarity=0.309 Sum_probs=55.5
Q ss_pred hhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc
Q 045475 133 KWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl 211 (662)
.-+...+.||||||+|+..++ ++.|.|.+..+ ..|.|.|||.||+.+.- . .+|......+ |+
T Consensus 30 ~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~-----g~i~V~DnG~Gip~~~h------~-~~~~~~~e~i--~t--- 92 (198)
T 3ttz_A 30 RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKD-----NWIKVTDNGRGIPVDIQ------E-KMGRPAVEVI--LT--- 92 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGG-----GEEEEEECSSCCCCSBC------T-TTSSBHHHHH--HH---
T ss_pred cchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCC-----CeEEEEECCCCcccccc------C-cCCCcccccc--ce---
Confidence 445578999999999988778 99999988642 28999999999998621 1 1111101111 22
Q ss_pred cccccccCCEEEEEeeeCC
Q 045475 212 KTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~~g 230 (662)
-++.-.|...+.|.+++.|
T Consensus 93 ~SvVNALS~~l~v~v~r~g 111 (198)
T 3ttz_A 93 SSVVNALSQDLEVYVHRNE 111 (198)
T ss_dssp TCHHHHTEEEEEEEEEETT
T ss_pred eEehhhhcCeEEEEEEECC
Confidence 2344567788999998765
No 57
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.43 E-value=0.00012 Score=64.04 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=54.4
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....++.||++||+.+ +.+..|.|.+..+. + ..|.|.|||.||+++. -|+||
T Consensus 38 ~~l~~il~nll~Na~k~--~~~~~i~i~~~~~~--~-~~i~v~D~G~gi~~~~---------------------~GlGL~ 91 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRH--ANATSLAINVSVED--D-VRVEVVDDGVGISGDI---------------------TESGLR 91 (124)
T ss_dssp HHHHHHHHHHHHHHHTC--TTCCEEEEEEEEEE--E-EEEEEEECCCSSCGGG---------------------SHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCEEEEEEEeCC--C-EEEEEEECCCCCCccc---------------------cccCHH
Confidence 34447899999999996 34668888887643 4 7899999999999876 17887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+.+.+.+...
T Consensus 92 ~~~~~~~~~gG~i~~~~~~~ 111 (124)
T 3zxq_A 92 NLRQRADDAGGEFTVENMPT 111 (124)
T ss_dssp HHHHHHHHHTCEEEEEECTT
T ss_pred HHHHHHHHhCCEEEEEEcCC
Confidence 344457899999988754
No 58
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=97.00 E-value=0.00069 Score=67.37 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=60.9
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCC--CCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGG--MTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~G--M~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
...++.+||+||++|...+ ..|.|.+... ++...|.|.|+|.| |+++.+...|...++++. +--|+||
T Consensus 147 ~~qvl~NLl~NA~~a~~~g-g~I~v~~~~~--~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~------~G~GLGLa 217 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAG-GVATVKGVAA--DGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGL------GGPWVQAA 217 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTC-CEEEEEEEEE--TTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-CeEEEEEEEE--CCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCC------CCccHHHH
Confidence 3478999999999975433 4688877654 46788999999987 667777777764444431 1137777
Q ss_pred --cccccccCCEEEEEee
Q 045475 212 --KTSTMRLGADVIVFSR 227 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk 227 (662)
+...-.+|+.+.|.|.
T Consensus 218 i~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 218 YLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHcCCEEEEEEc
Confidence 5666789999999875
No 59
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0042 Score=75.53 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=58.1
Q ss_pred HHHHHHhccchhhhhcC-C-ceEEEEEEecCCCCeeEEEEEECCCCCCHHH--------HHhhhh-ccccccccC---CC
Q 045475 137 GAFAELLDNSLDEVCNG-A-TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK--------MRQCMS-LGYSAKSKL---AN 202 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag-A-t~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee--------l~~~~~-~G~S~K~~~---~~ 202 (662)
..+-|+||||+|...+| + +.|.|.|..+ ...|+|.|||.||+-+. ++-+|. +....|-.+ ..
T Consensus 62 hl~~EildNsiDea~ag~~~~~I~V~i~~~----d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykv 137 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVRDPSMKRIDVNIHAE----EHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKV 137 (1177)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEEEETT----TTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCC
T ss_pred eEeeEEEEChHhHHhhCCCCCeEEEEEECC----CCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeE
Confidence 57799999999977666 3 6788887631 34799999999998642 233444 334444211 24
Q ss_pred ccCcccccccccccccCCEEEEEee
Q 045475 203 TIGQYGNGFKTSTMRLGADVIVFSR 227 (662)
Q Consensus 203 ~IG~fG~GlKsAs~rlg~~v~V~Sk 227 (662)
+-|..|+|.+ ++-.|...+.|.+.
T Consensus 138 SGGLHGVG~s-vVNALS~~~~vev~ 161 (1177)
T 4gfh_A 138 TGGRNGYGAK-LCNIFSTEFILETA 161 (1177)
T ss_dssp CSCCSSCHHH-HHHHTEEEEEEEEE
T ss_pred eccCCChhhh-HHhhcCCceEEEEE
Confidence 5799999974 45557777766664
No 60
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=95.11 E-value=0.013 Score=57.43 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=39.2
Q ss_pred HHHHHhccchhhhhc-----CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccc
Q 045475 138 AFAELLDNSLDEVCN-----GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYS 195 (662)
Q Consensus 138 AIaELVDNAiDA~~a-----gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S 195 (662)
.++.|++||++|+.+ ..+.|.|.+..+..++...|.|.|+|.|++.+.+.++|.-|++
T Consensus 109 ~lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp HHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 567899999998743 2567888887641135688999999999999999999876665
No 61
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=90.76 E-value=0.26 Score=52.69 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=43.8
Q ss_pred HHHHHHHHhccchhhhhc--CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccc
Q 045475 135 ALGAFAELLDNSLDEVCN--GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFK 212 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~a--gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlK 212 (662)
...|+.||+.||+..... ....|.|.+.... ++...|.|.|+|.|+++. +. -+.-|.||.
T Consensus 298 ~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~-~~~l~i~V~D~G~g~~~~----------~~-------~~~~G~GL~ 359 (399)
T 3ke6_A 298 IVHAISEFVENAVEHGYATDVSKGIVVAAALAG-DGNVRASVIDRGQWKDHR----------DG-------ARGRGRGLA 359 (399)
T ss_dssp HHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-TSEEEEEEEESCBC-----------------------------CHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-CCEEEEEEEECCCCCCCC----------CC-------CCCCCcHHH
Confidence 346899999999997311 1456888877642 346789999999999886 11 022377874
Q ss_pred ccccccCCEEEEEee
Q 045475 213 TSTMRLGADVIVFSR 227 (662)
Q Consensus 213 sAs~rlg~~v~V~Sk 227 (662)
. .-.++..+.+.+.
T Consensus 360 l-v~~l~~~~~~~~~ 373 (399)
T 3ke6_A 360 M-AEALVSEARIMHG 373 (399)
T ss_dssp H-HHTTSSEEEEEEE
T ss_pred H-HHHHHHheeeEEC
Confidence 3 3457777776544
No 62
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=73.94 E-value=1.4 Score=38.56 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=27.6
Q ss_pred cceeeecCcccccccccccccchhhhhcccccccccccC
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHEA 578 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~~ 578 (662)
.-..||||.|..|-=.+=+.+. .+.+|+.|+|..=
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~----~~~~p~~w~C~~C 73 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGID----RQHIPDTYLCERC 73 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCC----TTSCCSSBCCTTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCC----ccCCCCCEECCCC
Confidence 4578999999999866666664 5678999999643
No 63
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=72.72 E-value=1.6 Score=35.84 Aligned_cols=34 Identities=12% Similarity=0.286 Sum_probs=26.0
Q ss_pred cceeeecCcccccccccccccchhhhhccccccccccc
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHE 577 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~ 577 (662)
....||||.|..|--..-+... .+.+|+.|+|..
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~----~~~~~~~~~C~~ 63 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIR----KSNVPEVFVCQK 63 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCC----TTSCCSSCCCHH
T ss_pred CCCEEECCCCCccccccccCcC----cccCCCcEECCC
Confidence 4568999999999766666665 346789999953
No 64
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=70.71 E-value=2.1 Score=32.99 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=25.5
Q ss_pred cceeeecCcccccccccccccchhhhhcccccccccc
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCH 576 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~ 576 (662)
....||||.|..|--..=+... .+.+|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~----~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIR----KSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCC----GGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCC----cccCCCcEECc
Confidence 3578999999999766666665 34678999995
No 65
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.89 E-value=16 Score=30.56 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=37.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhhcc
Q 045475 596 PHGTRNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRTT 657 (662)
Q Consensus 596 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (662)
.+|| +.+==+..+.+.+|+..+++ +|+....++...|.++.+||..|..--|
T Consensus 17 ~mgt--i~eLq~~L~~K~eELr~kd~--------~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 17 GRGS--LRDLQYALQEKIEELRQRDA--------LIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp --CH--HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCc--HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3777 55444455666666665554 8999999999999999999999865443
No 66
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=58.52 E-value=3.1 Score=48.58 Aligned_cols=48 Identities=8% Similarity=0.116 Sum_probs=33.0
Q ss_pred cceeeecC--cccccccccccccchhhhhcccccccccccCCCc-----cccccCCCCC
Q 045475 540 VHQILKGG--ECSSFKMEYISEFDKRLQEESASEDRSCHEASPA-----IDESQRGPGS 591 (662)
Q Consensus 540 ~~~~vq~~--~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-----~~~~~~~~~~ 591 (662)
.+.|+||- .|+|||+.. -+ .-+..+.++...|.|.++- ..+.|.-||.
T Consensus 90 l~~~~~c~~~~c~~~~~~~---~~-~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 144 (776)
T 4gut_A 90 LPYWVQCTKPECRKWRQLT---KE-IQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPED 144 (776)
T ss_dssp SCCEEECCCTTTCCEEECC---TT-CCCCHHHHHHCCTTCCCC-------CCGGGSCCC
T ss_pred CcHhhhcCcccccchhhCC---Cc-CCCChhhhheeeccCccCcccccccCCCCCCCcc
Confidence 37899998 999999653 22 2234456788899888654 2567877764
No 67
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.45 E-value=4.9 Score=32.84 Aligned_cols=34 Identities=9% Similarity=0.273 Sum_probs=24.1
Q ss_pred ceeeecCcccccccccccccchhhhhccccccccccc
Q 045475 541 HQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHE 577 (662)
Q Consensus 541 ~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~ 577 (662)
..+||||.|..|--..=+.+.. .+..|+.|+|..
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~---~~~~~~~~~C~~ 62 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINN---ADALPSKFLCFR 62 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCT---TSCCCSCCCCHH
T ss_pred CcEEECCCCCCccCCeeeccCc---cccCCCcEECCC
Confidence 4699999999996555555542 234688999953
No 68
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.30 E-value=8 Score=30.62 Aligned_cols=36 Identities=6% Similarity=0.004 Sum_probs=23.2
Q ss_pred cceeeecCcccccccccccccchhhhhccccccccccc
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHE 577 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~ 577 (662)
...+||||.|..|--..=+...... ...++.|+|..
T Consensus 19 ~~~mI~Cd~C~~WfH~~Cvgl~~~~--~~~~~~~~C~~ 54 (64)
T 1we9_A 19 DEFWICCDLCEMWFHGKCVKITPAR--AEHIKQYKCPS 54 (64)
T ss_dssp SSCEEECSSSCCEEETTTTTCCTTG--GGGCSSCCCHH
T ss_pred CCCEEEccCCCCCCCccccCcChhH--hcCCCcEECCC
Confidence 4679999999999644444443211 12357899854
No 69
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=45.75 E-value=16 Score=28.32 Aligned_cols=33 Identities=48% Similarity=0.461 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccchhHHHHh
Q 045475 602 LLSKLKEVENKLRELEKKEKVLIDDNASLINIF 634 (662)
Q Consensus 602 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (662)
-++++|+.|+.|+.+.|.-+-|-|||+=|=||-
T Consensus 12 ~Rkk~eeler~lrk~kk~iKklEdeNPWLGNIk 44 (50)
T 1a92_A 12 GRKKLEELERDLRKLKKKIKKLEEDNPWLGNIK 44 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCchhhhh
Confidence 589999999999999999999999999988874
No 70
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=44.78 E-value=44 Score=28.52 Aligned_cols=49 Identities=33% Similarity=0.409 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhh
Q 045475 602 LLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRV 654 (662)
Q Consensus 602 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (662)
||-++++++|.--..+++=+ -..+=+-.+++.+.-+|+++++|.++|-.
T Consensus 31 Lr~kv~elEnErlQyEkKLK----sTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLK----ATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 66666666665555555544 11133678899999999999999999854
No 71
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.45 E-value=7.4 Score=32.36 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=23.6
Q ss_pred cceeeecCcccccccccccccchhhhhccccccccccc
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHE 577 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~ 577 (662)
...+||||.|..|--..=+.....- ...++.|+|..
T Consensus 24 ~~~MIqCd~C~~WfH~~Cvgl~~~~--~~~~~~~~C~~ 59 (79)
T 1wep_A 24 NHFMIECGLCQDWFHGSCVGIEEEN--AVDIDIYHCPD 59 (79)
T ss_dssp SSCEEEBTTTCCEEEHHHHTCCHHH--HTTCSBBCCTT
T ss_pred CCceEEcCCCCCcEEeeecCccccc--ccCCCeEECCC
Confidence 5789999999999644444443211 12268899964
No 72
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=41.40 E-value=9.7 Score=31.36 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=23.0
Q ss_pred cceeeecCcccccccccccccchhhhhccc--cccccccc
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQEESA--SEDRSCHE 577 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~--~~~~~c~~ 577 (662)
....||||.|..|--..-+... +..+ ++.|+|..
T Consensus 22 ~~~MI~Cd~C~~WfH~~Cvg~~----~~~~~~~~~~~C~~ 57 (75)
T 3kqi_A 22 TRFMIECDACKDWFHGSCVGVE----EEEAPDIDIYHCPN 57 (75)
T ss_dssp TSCEEECTTTCCEEEHHHHTCC----TTTGGGBSSCCCHH
T ss_pred CCCEEEcCCCCCCEeccccccc----ccccCCCCEEECCC
Confidence 4579999999999655545443 2333 47898853
No 73
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=34.07 E-value=13 Score=30.28 Aligned_cols=33 Identities=6% Similarity=0.124 Sum_probs=20.7
Q ss_pred ceeeecCcccccccccccccchhhhhccc-cccccccc
Q 045475 541 HQILKGGECSSFKMEYISEFDKRLQEESA-SEDRSCHE 577 (662)
Q Consensus 541 ~~~vq~~~c~~w~~~~~~~~~~~~~~~~~-~~~~~c~~ 577 (662)
..+|+||.|..|=-.+=+.+. .... .++|+|..
T Consensus 31 ~~mi~CD~C~~wfH~~Cv~~~----~~~~~~~~w~C~~ 64 (75)
T 2k16_A 31 SPMIGCDDCDDWYHWPCVGIM----AAPPEEMQWFCPK 64 (75)
T ss_dssp CCEEECSSSSSEEEHHHHTCS----SCCCSSSCCCCTT
T ss_pred CCEEEcCCCCcccccccCCCC----ccCCCCCCEEChh
Confidence 479999999999533333332 2222 36899953
No 74
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=32.62 E-value=44 Score=30.60 Aligned_cols=55 Identities=24% Similarity=0.380 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhhc
Q 045475 601 NLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRT 656 (662)
Q Consensus 601 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (662)
-|+..|++++-+|+++++-=.+. ..|++=.+|=..|+.||.+-++.+|.+++...
T Consensus 71 EL~~~l~sie~dLeDLe~sI~iv-E~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 71 ELRNGLRSIEWDLEDLEETIGIV-EANPGKFKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888766643 34555556778899999999999999987643
No 75
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=28.42 E-value=69 Score=32.71 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=37.5
Q ss_pred ccceEEEEcCcccc-ccccccccCCCCCceeEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHHHHH
Q 045475 437 IQGFNVYHKNRLIK-PFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYW 505 (662)
Q Consensus 437 ~qGf~VY~nnRLI~-~fekVg~~~~s~grGVIGVleanfLePthnKQdFe~t~~y~~L~~~L~e~l~eYW 505 (662)
..|+-+|.+.=+|. -.+.+.+++ -+=|=||||++-|+++-+-.-...+..++++++.|..++.+..
T Consensus 70 ~~~ikLYvrrVfI~d~~~~llP~y---L~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l 136 (263)
T 1y6z_A 70 SRGIRLYVKRVFINDKFSESIPRW---LTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMM 136 (263)
T ss_dssp -CCEEEEETTEEEESCGGGGSCGG---GTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHH
T ss_pred hcCeeEEEeeeEeecchhhhchHH---HHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHH
Confidence 46999999988883 233344444 3446699999999999998888888888777777766665444
No 76
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=28.25 E-value=27 Score=26.63 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=21.9
Q ss_pred cceeeecC-cccccccccccccchhhhhcccccccccc
Q 045475 540 VHQILKGG-ECSSFKMEYISEFDKRLQEESASEDRSCH 576 (662)
Q Consensus 540 ~~~~vq~~-~c~~w~~~~~~~~~~~~~~~~~~~~~~c~ 576 (662)
...+|||| .|..|--..=+..+..-. .++.|+|.
T Consensus 15 ~~~mI~Cd~~C~~WfH~~Cvgl~~~~~---~~~~~~C~ 49 (52)
T 2kgg_A 15 KVDWVQCDGGCDEWFHQVCVGVSPEMA---ENEDYICI 49 (52)
T ss_dssp TCCEEECTTTTCCEEETTTTTCCHHHH---HHSCCCCS
T ss_pred CCcEEEeCCCCCccCcccccCCCcccc---CCCCEECC
Confidence 46799999 999995444455542211 13779885
No 77
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=28.06 E-value=18 Score=33.87 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=23.6
Q ss_pred cceeeecCcccccccccccccchhhhhcccccccccccC
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHEA 578 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~~ 578 (662)
...+||||.|..|=-..=.+.... +.+.++.|+|..=
T Consensus 20 ~~~mi~Cd~C~~WfH~~Cv~~~~~--~~~~~~~~~C~~C 56 (174)
T 2ri7_A 20 SKFYIGCDRCQNWYHGRCVGILQS--EAELIDEYVCPQC 56 (174)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHH--HHTTCSSCCCHHH
T ss_pred CCCEeECCCCCchhChhhcCCchh--hccCccCeecCCC
Confidence 356999999999954433333211 2345789998643
No 78
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.68 E-value=18 Score=29.62 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=22.8
Q ss_pred cceeeecCcccccccccccccchhhhh--cccccccccc
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQE--ESASEDRSCH 576 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~--~~~~~~~~c~ 576 (662)
...+||||.|..|--..=+.+...... ...++.|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 357999999999954444444322111 1136789995
No 79
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=26.98 E-value=1.1e+02 Score=31.33 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=42.2
Q ss_pred ccceEEEEcCccccc-cccccccCCCCCceeEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHHHHH
Q 045475 437 IQGFNVYHKNRLIKP-FWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYW 505 (662)
Q Consensus 437 ~qGf~VY~nnRLI~~-fekVg~~~~s~grGVIGVleanfLePthnKQdFe~t~~y~~L~~~L~e~l~eYW 505 (662)
..|+-+|++.=+|.- .+.+.+++ -+=|=||||++-|+++-+-.-...+..++++++.|..++.+..
T Consensus 68 ~~~ikLYvrrVfI~d~~~~llP~y---L~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l 134 (260)
T 1usu_A 68 KNNIKLYVRRVFITDEAEDLIPEW---LSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAF 134 (260)
T ss_dssp -CCEEEEETTEEEESCCTTSSCGG---GTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeeeEeccchhhhchHH---HHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 459999999888832 22233333 3446699999999999999888888888888877776665433
No 80
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=23.21 E-value=30 Score=23.76 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=13.9
Q ss_pred HHHHHHhccchhhhhcC
Q 045475 137 GAFAELLDNSLDEVCNG 153 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag 153 (662)
.-|.||+||+++.+.+.
T Consensus 12 kqieelldncietfvae 28 (31)
T 4h62_V 12 KQIEELLDNCIETFVAE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 46899999999977654
No 81
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.58 E-value=1.2e+02 Score=28.39 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhhcccc
Q 045475 607 KEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRTTSI 659 (662)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (662)
++..+++++|++|-+ ..-.-.++..++.+...+.+++-|+..+..|
T Consensus 88 eeQ~~ri~~Le~E~~-------~~~~el~~~v~eae~ll~~v~~~l~~ia~~~ 133 (151)
T 1yke_B 88 EEQLRKIDMLQKKLV-------EVEDEKIEAIKKKEKLLRHVDSLIEDFVDGI 133 (151)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555 4444455666666777777777777766554
No 82
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=22.39 E-value=39 Score=27.16 Aligned_cols=38 Identities=5% Similarity=0.118 Sum_probs=26.4
Q ss_pred CcceeeecC--cccccccccccccchhh-hhcccccccccc
Q 045475 539 NVHQILKGG--ECSSFKMEYISEFDKRL-QEESASEDRSCH 576 (662)
Q Consensus 539 ~~~~~vq~~--~c~~w~~~~~~~~~~~~-~~~~~~~~~~c~ 576 (662)
..-..|||| .|..|---.=+.+.... ....+|+.|+|.
T Consensus 20 ~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 20 VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 345789998 69999866666664332 234578899995
No 83
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=22.25 E-value=1e+02 Score=32.11 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=45.6
Q ss_pred ccceEEEEcCcccc-ccccccccCCCCCceeEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHH
Q 045475 437 IQGFNVYHKNRLIK-PFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQK 502 (662)
Q Consensus 437 ~qGf~VY~nnRLI~-~fekVg~~~~s~grGVIGVleanfLePthnKQdFe~t~~y~~L~~~L~e~l~ 502 (662)
..|+-+|.+.=+|. -.+.+.+++ -+=|=||||++-|+++-+-.-...+..++++++.|.+++.
T Consensus 66 ~~~ikLYvrrVfI~D~~eeLlP~y---L~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl 129 (303)
T 2gq0_A 66 KHGLKLYVQRVFIMDDAEQFMPNY---LRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVL 129 (303)
T ss_dssp CCSEEEEETTEEEEEEEGGGSCGG---GTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeceEeecchhhhchHH---HHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHH
Confidence 46999999988884 223344544 3456699999999999988888888777766666655443
No 84
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=21.85 E-value=1.2e+02 Score=32.65 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=45.8
Q ss_pred ccceEEEEcCccccc-cccccccCCCCCceeEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHH
Q 045475 437 IQGFNVYHKNRLIKP-FWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQK 502 (662)
Q Consensus 437 ~qGf~VY~nnRLI~~-fekVg~~~~s~grGVIGVleanfLePthnKQdFe~t~~y~~L~~~L~e~l~ 502 (662)
..|+-+|++.=+|.- .+.+.+.+ -+=|=||||++-|+++-+-.-...+..++++.+.|..++.
T Consensus 66 ~~~ikLYvrrVfI~d~~~~llP~y---L~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl 129 (405)
T 2cge_A 66 KNNIKLYVRRVFITDEAEDLIPEW---LSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLI 129 (405)
T ss_dssp CCCCEEEETTEEEESSCSSSSCGG---GTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeeeEecCchhhhChHH---HHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHH
Confidence 459999999888832 22233333 3446699999999999999888888888777777665543
No 85
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=20.57 E-value=1.1e+02 Score=24.71 Aligned_cols=18 Identities=50% Similarity=0.492 Sum_probs=9.3
Q ss_pred HHhhhchHHHHHHHHHHh
Q 045475 636 EELKRSDAKVERLRERLR 653 (662)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~ 653 (662)
|+|+-.-++.|.-|+++|
T Consensus 26 e~Rk~Kh~kME~ERE~mR 43 (63)
T 3rk3_E 26 EERKAKYAKMEAEREAVR 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555554
No 86
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.15 E-value=1.5e+02 Score=26.90 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHH----HHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHh
Q 045475 599 TRNLLSKLKEVENK----LRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLR 653 (662)
Q Consensus 599 ~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (662)
+|+|+.+|+.-.-| .+|++- =|....+++.-.-+|+|+||..-.
T Consensus 55 V~tL~~SL~~ekaq~q~~vqeLqg-----------EI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 55 VMALMASLDAEKAQGQKKVEELEG-----------EITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhch
Confidence 45577777764444 333332 244556677777788888887654
Done!