Query 045475
Match_columns 662
No_of_seqs 308 out of 1477
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 03:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045475.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045475hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iwxa1 d.122.1.1 (A:2-214) HS 99.4 4E-14 2.9E-18 139.2 7.6 107 123-232 13-143 (213)
2 d1b63a2 d.122.1.2 (A:-2-216) D 99.4 1.6E-13 1.2E-17 134.9 10.4 144 118-269 6-160 (218)
3 d1uyla_ d.122.1.1 (A:) HSP90 { 99.4 1.9E-13 1.4E-17 133.8 7.2 105 124-231 13-141 (208)
4 d1h7sa2 d.122.1.2 (A:29-231) D 99.3 3.6E-13 2.6E-17 130.8 7.3 128 133-268 5-141 (203)
5 d2gqpa1 d.122.1.1 (A:74-337) H 99.3 5.8E-13 4.2E-17 132.0 6.0 107 124-233 12-147 (227)
6 d2hkja3 d.122.1.2 (A:10-228) T 99.1 8E-11 5.9E-15 114.7 9.0 97 135-231 23-127 (219)
7 d2c2aa2 d.122.1.3 (A:321-481) 98.5 5.3E-08 3.8E-12 90.0 6.1 93 135-229 50-147 (161)
8 d1ysra1 d.122.1.3 (A:299-446) 98.4 3.4E-07 2.5E-11 83.5 9.6 89 134-229 44-135 (148)
9 d1id0a_ d.122.1.3 (A:) Histidi 98.4 4.4E-07 3.2E-11 82.6 9.2 86 135-229 45-133 (146)
10 d1bxda_ d.122.1.3 (A:) Histidi 98.3 2.3E-07 1.7E-11 85.9 6.7 88 135-229 48-138 (161)
11 d1gkza2 d.122.1.4 (A:186-378) 98.3 2.2E-07 1.6E-11 87.4 6.4 91 137-229 56-176 (193)
12 d1ei1a2 d.122.1.2 (A:2-220) DN 98.3 4.9E-07 3.5E-11 88.3 8.9 112 112-230 12-137 (219)
13 d1jm6a2 d.122.1.4 (A:1177-1366 98.2 8.9E-07 6.5E-11 83.8 7.5 91 136-228 62-166 (190)
14 d1r62a_ d.122.1.3 (A:) Nitroge 98.0 1.4E-06 1E-10 79.5 3.2 89 134-228 44-143 (156)
15 d1ixma_ d.123.1.1 (A:) Sporula 97.9 2.9E-06 2.1E-10 75.2 3.4 63 134-196 97-160 (179)
16 d1y8oa2 d.122.1.4 (A:177-301) 97.6 4E-05 2.9E-09 65.4 6.8 52 137-190 67-125 (125)
17 d1kija2 d.122.1.2 (A:9-220) DN 97.6 3.1E-05 2.3E-09 74.7 6.4 90 135-230 27-129 (212)
18 d1pvga2 d.122.1.2 (A:7-245) DN 97.4 0.0001 7.6E-09 72.3 7.9 89 135-228 54-156 (239)
19 d1s14a_ d.122.1.2 (A:) Topoiso 97.3 6.6E-05 4.8E-09 70.3 4.1 74 138-231 9-86 (168)
20 d1th8a_ d.122.1.3 (A:) Anti-si 97.1 0.00019 1.4E-08 64.0 5.4 84 137-229 42-127 (139)
21 d1weea_ g.50.1.2 (A:) PHD fing 46.0 4 0.00029 31.2 1.8 34 540-576 28-61 (72)
22 d1we9a_ g.50.1.2 (A:) PHD fing 42.0 6.4 0.00047 29.3 2.4 36 540-577 19-54 (64)
23 d1lvfa_ a.47.2.1 (A:) Syntaxin 41.5 14 0.0011 30.3 4.9 57 599-656 44-100 (106)
24 d1wepa_ g.50.1.2 (A:) PHD fing 40.7 3.5 0.00026 32.4 0.7 35 540-578 24-60 (79)
25 d1wema_ g.50.1.2 (A:) Death as 40.0 5.2 0.00038 30.7 1.6 38 540-577 27-66 (76)
26 d1i58a_ d.122.1.3 (A:) Histidi 29.4 7.4 0.00054 32.9 0.9 25 205-229 150-177 (189)
27 d1weva_ g.50.1.2 (A:) PHD fing 28.0 11 0.00079 29.7 1.7 38 541-578 31-69 (88)
28 d1k4ta1 a.2.8.1 (A:641-712) Eu 26.7 39 0.0028 26.3 4.7 21 601-621 6-26 (72)
29 d1f62a_ g.50.1.2 (A:) Williams 25.7 13 0.00097 26.2 1.7 33 541-577 13-46 (51)
30 d1usua_ d.14.1.8 (A:) Heat sho 22.4 63 0.0046 30.4 6.4 63 437-502 67-130 (256)
No 1
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.44 E-value=4e-14 Score=139.19 Aligned_cols=107 Identities=19% Similarity=0.272 Sum_probs=81.2
Q ss_pred hhhhhhhcc-chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHh
Q 045475 123 KFLHSNATS-HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQ 188 (662)
Q Consensus 123 ~fL~s~sts-h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~ 188 (662)
+.|+-++.+ |+.|-.+|.|||.||.||+.+ ....+.|.+..++ +...|.|.|||.||+.+++.+
T Consensus 13 ~ll~ll~~~lYs~~~iflRELiqNa~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~d~--~~~~l~i~DnGiGMt~~~~~~ 90 (213)
T d2iwxa1 13 QLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELIN 90 (213)
T ss_dssp HHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHTTTCGGGGTTSCCCCEEEEEEG--GGTEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHhhcCCchHHHHHHHHhHHHHHHHHHHhhccCcccccCCccccccccccc--ccceeEEecCCccccHHHHHH
Confidence 356666655 677778999999999999742 1124455555543 467899999999999999987
Q ss_pred hh-hccccccc---------cCCCccCcccccccccccccCCEEEEEeeeCCCC
Q 045475 189 CM-SLGYSAKS---------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTD 232 (662)
Q Consensus 189 ~~-~~G~S~K~---------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~ 232 (662)
.+ .+|.|.+. .....|||||+||.+|.| ++.++.|.||+.+..
T Consensus 91 ~l~~ia~S~~~~~~~~~~~~~~~~~IGqFGIGfyS~Fm-vad~v~V~trs~~~~ 143 (213)
T d2iwxa1 91 NLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDDE 143 (213)
T ss_dssp HHTTCCCSTHHHHHHHHHHTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTSC
T ss_pred HHhhhhcccchHHHhhhhhhhhhhhhcccccchhhhhh-hccceeEEeecCCcc
Confidence 55 59998764 233579999999976655 999999999987653
No 2
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
Probab=99.42 E-value=1.6e-13 Score=134.94 Aligned_cols=144 Identities=17% Similarity=0.241 Sum_probs=107.3
Q ss_pred eeeChhhhhhhhcc--chhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccc
Q 045475 118 LRVHPKFLHSNATS--HKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYS 195 (662)
Q Consensus 118 ~~~~p~fL~s~sts--h~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S 195 (662)
-.+++...+.++.. -..|.+||.|||+||+|| +|+.|.|.+.. +|...|.|.|||.||+++++..+...+++
T Consensus 6 ~~L~~~~~~~i~ag~vi~~~~~~vkELveNsiDA---~At~I~V~i~~---~g~~~i~V~DnG~Gi~~~d~~~~~~r~~T 79 (218)
T d1b63a2 6 QVLPPQLANQIAAGEVVERPASVVKELVENSLDA---GATRIDIDIER---GGAKLIRIRDNGCGIKKDELALALARHAT 79 (218)
T ss_dssp CCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGHHHHHSTTCC
T ss_pred eECCHHHHHHhCCcCEEecHHHHHHHHHhhhhcC---CCCEEEEEEEc---CCccEEEEeeCCCCcCHHHHHhhHhcccc
Confidence 45677777777655 488889999999999995 99999998864 35678999999999999999998887777
Q ss_pred ccccC------CCccCcccccccccccccCCEEEEEeeeCCCC-Cceeeeeeccc--eeeeecCCCCcceEEeccccccc
Q 045475 196 AKSKL------ANTIGQYGNGFKTSTMRLGADVIVFSRCQGTD-GKCSTQSIGML--SYTFLRGTGKEDIVVPMVDYEKR 266 (662)
Q Consensus 196 ~K~~~------~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~-G~~~t~siglL--S~Tfl~~~~~~dI~VPil~~~~~ 266 (662)
+|... ..++|.-|-+| +++....++.|.|++.+.. |++.....+-. +..-......+.|.|--++|+.+
T Consensus 80 SKi~~~~dl~~~~t~GFRGEAL--~Si~~vs~l~I~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~LF~n~P 157 (218)
T d1b63a2 80 SKIASLDDLEAIISLGFRGEAL--ASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTP 157 (218)
T ss_dssp SSCCSHHHHHTCCSSCCSSCHH--HHHHTTSEEEEEEECTTCSSEEEEEEETTTTEEEEEEECCCSEEEEEEESTTTTCH
T ss_pred ccccchhhcchhhhhccchhHH--HHhhhcCceEEeeecCCCCceEEEEEEeccccceeeecccCCccEEEEEeeEecch
Confidence 77532 24566667765 5667778999999998765 55554444432 22222334578899999999987
Q ss_pred ccc
Q 045475 267 GEH 269 (662)
Q Consensus 267 ~~~ 269 (662)
.+.
T Consensus 158 vRr 160 (218)
T d1b63a2 158 ARR 160 (218)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 3
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.38 E-value=1.9e-13 Score=133.81 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=78.5
Q ss_pred hhhhhhcc-chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhh
Q 045475 124 FLHSNATS-HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQC 189 (662)
Q Consensus 124 fL~s~sts-h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~ 189 (662)
.|+-+..+ |+.|...|.|||.||.||+.. ......|.|..++ +...|.|.|||.||+.+++.+.
T Consensus 13 ll~ll~~slYs~~~iflRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~d~--~~~~l~I~DnGiGMt~~el~~~ 90 (208)
T d1uyla_ 13 LMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLTIVDTGIGMTKADLINN 90 (208)
T ss_dssp HHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHTG
T ss_pred HHHHHHHhhcCCchHhHHHHHhhHHHHHHHHHHHhcCCchhccCCcccceEEeecC--CccEEEEEcCCccccHHHHHhh
Confidence 44444433 666777999999999999631 1133455555543 4679999999999999999876
Q ss_pred h-hccccccc---------cCCCccCcccccccccccccCCEEEEEeeeCCC
Q 045475 190 M-SLGYSAKS---------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 190 ~-~~G~S~K~---------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
+ .+|.|.+. .+...||+||+||.++.| .+.++.|.||..+.
T Consensus 91 LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~~ 141 (208)
T d1uyla_ 91 LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD 141 (208)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS
T ss_pred cccccccchHHHHHhhhhccchhhhhhcccceEEeee-ccCceEEEEecCCc
Confidence 5 48888753 234579999999987776 99999999997664
No 4
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.35 E-value=3.6e-13 Score=130.82 Aligned_cols=128 Identities=22% Similarity=0.219 Sum_probs=86.2
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccccccc------CCCccCc
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSK------LANTIGQ 206 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~------~~~~IG~ 206 (662)
..|.+||.||||||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..+.++|.. ....+|.
T Consensus 5 ~~~~~~v~ELi~NsiDA---~At~I~i~i~~---~g~~~i~V~DnG~Gi~~~dl~~~~~~~~tsk~~~~~~~~~~~t~Gf 78 (203)
T d1h7sa2 5 LSLSTAVKELVENSLDA---GATNIDLKLKD---YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGF 78 (203)
T ss_dssp CCHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESS
T ss_pred ecHHHHHHHHHHHHHcC---CCCEEEEEEEc---CCEEEEEEeeCCcccCHHHhhhhhhheeecccccccccccccccCc
Confidence 34668999999999995 89999998863 355689999999999999999887766556542 1234455
Q ss_pred ccccccccccccCCEEEEEeeeCCCC-Cceeeeee-cc-ceeeeecCCCCcceEEeccccccccc
Q 045475 207 YGNGFKTSTMRLGADVIVFSRCQGTD-GKCSTQSI-GM-LSYTFLRGTGKEDIVVPMVDYEKRGE 268 (662)
Q Consensus 207 fG~GlKsAs~rlg~~v~V~Sk~~g~~-G~~~t~si-gl-LS~Tfl~~~~~~dI~VPil~~~~~~~ 268 (662)
.|.+| +++....+++|.|++.+.. |.+..... |. .+..-......+.|.|-.++|+.+.+
T Consensus 79 rGeaL--~si~~~s~~~i~s~~~~~~~~~~i~~~~~g~~~~~~~~~~~~GTtV~v~~LF~n~PvR 141 (203)
T d1h7sa2 79 RGEAL--SSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVR 141 (203)
T ss_dssp SSSHH--HHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEEEEECCCCSEEEEEEESTTTTSHHH
T ss_pred cchhh--hhhhhccceEEEeecCCCchhEEEEEeccCceeeeeecccccceEEEeehhhhhHHHH
Confidence 56664 4566677899999988765 55555443 22 22222222346788999999987654
No 5
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=99.31 E-value=5.8e-13 Score=132.00 Aligned_cols=107 Identities=26% Similarity=0.367 Sum_probs=73.8
Q ss_pred hhhhhhcc-chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhh
Q 045475 124 FLHSNATS-HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQC 189 (662)
Q Consensus 124 fL~s~sts-h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~ 189 (662)
.|+-++.+ |+.|..+|.|||.||.||+.. +...+.|.+..++ +...|.|.|||.||+.+++.+.
T Consensus 12 ll~ll~~sLYs~~~iflRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~i~i~~d~--~~~~l~i~DnGiGMt~~e~~~~ 89 (227)
T d2gqpa1 12 MMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMTREELVKN 89 (227)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHH
T ss_pred HHHHHHhcccCCCchhHHHHHhhHHHHHHHHHHHhccCcccccccchhhhhcccCC--CCcEEEEEecCccccHHHHHHH
Confidence 34444433 666778999999999999731 1123455555443 4678999999999999999887
Q ss_pred hh-cccccccc--------------CCCccCcccccccccccccCCEEEEEeeeCCCCC
Q 045475 190 MS-LGYSAKSK--------------LANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDG 233 (662)
Q Consensus 190 ~~-~G~S~K~~--------------~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G 233 (662)
+. +|.|.... ....|||||+||-+|.| .+.+|.|.|+..+..+
T Consensus 90 lgtIa~Sgt~~f~~~~~~~~~~~~~~~~~IGqFGvGfyS~Fm-Vad~V~v~s~~~~~~~ 147 (227)
T d2gqpa1 90 LGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNNDTQ 147 (227)
T ss_dssp HHCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTTSCC
T ss_pred HHHHhhcchHHHHHhhhhcccccccchhhhhhcCcceeEEEe-eeeeEEEEEeccCCcc
Confidence 64 88876431 11349999999987777 8999999999876544
No 6
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=99.09 E-value=8e-11 Score=114.75 Aligned_cols=97 Identities=23% Similarity=0.282 Sum_probs=69.3
Q ss_pred HHHHHHHHhccchhhhhcC--CceEEEEEEecC-CCCeeEEEEEECCCCCCHHHHHhhhh-ccccccccCCCccCccccc
Q 045475 135 ALGAFAELLDNSLDEVCNG--ATYVQVDLLKNK-TDGTHMLLVEDNGGGMTPDKMRQCMS-LGYSAKSKLANTIGQYGNG 210 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~ag--At~V~I~i~~~~-~~g~~~L~I~DNG~GM~~eel~~~~~-~G~S~K~~~~~~IG~fG~G 210 (662)
..+||.||||||+||...+ ...+.|.+.... ..+...|.|.|||+||+++++..++. |.++.+.......|.+|+|
T Consensus 23 L~~~l~eLi~Naida~~~~~~~~~i~i~i~~~~~~~~~~~i~V~DnG~Gi~~~~~~~~f~~~~~s~~~~~~~~~G~~GlG 102 (219)
T d2hkja3 23 LYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLG 102 (219)
T ss_dssp HHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEEECSCCCCGGGHHHHHHCCCSSCCCCCSCCSCSCTTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEEEEecCCCCEEEEEEEcCCCCCCHHHHHhhccceEeccccccccccCccCHH
Confidence 4589999999999985432 124444443221 23456899999999999999999986 5555554455678999999
Q ss_pred ccccc----cccCCEEEEEeeeCCC
Q 045475 211 FKTST----MRLGADVIVFSRCQGT 231 (662)
Q Consensus 211 lKsAs----~rlg~~v~V~Sk~~g~ 231 (662)
|..+. +..|..+.|.|+..+.
T Consensus 103 l~~~~~~s~~~~g~~i~V~S~~~~~ 127 (219)
T d2hkja3 103 VKAAVLYSQMHQDKPIEIETSPVNS 127 (219)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCC
Confidence 96433 3445669999998764
No 7
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=98.49 E-value=5.3e-08 Score=90.02 Aligned_cols=93 Identities=27% Similarity=0.327 Sum_probs=64.4
Q ss_pred HHHHHHHHhccchhhhhcCCc--eEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 135 ALGAFAELLDNSLDEVCNGAT--YVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt--~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.-.+|.+||+||+.+...+.. .|.|.+... ++...|.|.|||.||+++++.++|...+..+.......+-.|+||
T Consensus 50 l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~ 127 (161)
T d2c2aa2 50 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK--DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLA 127 (161)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE--TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHH
T ss_pred HHHHHHHHHHHHHHhhhcCCCcceeeEEEEec--CCEEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHHH
Confidence 337999999999997544432 466655543 467789999999999999999999855544322112233348887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+++.|.|+..
T Consensus 128 i~k~iv~~hgG~i~v~s~~~ 147 (161)
T d2c2aa2 128 ITKEIVELHGGRIWVESEVG 147 (161)
T ss_dssp HHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHHCCCEEEEEecCC
Confidence 666778999999998853
No 8
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.42 E-value=3.4e-07 Score=83.49 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=63.3
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc--
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
+...+|.+||+||+.+ +++..|.|.+... ++...|.|.|||.||+++++.++|...+..... .-+-.|+||
T Consensus 44 ~l~~vl~NLl~NAiky--~~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~ife~f~r~~~~---~~~G~GLGL~i 116 (148)
T d1ysra1 44 GLRLAVDNAIANAVKH--GGATLVQLSAVSS--RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA---SHSGSGLGLAL 116 (148)
T ss_dssp HHHHHHHHHHHHHHHT--TCCSEEEEEEEEE--TTEEEEEEEESSSCCCGGGHHHHHTSCC--------------CCCHH
T ss_pred HHHHHHHHHHHHHHHh--cCCcEEEEEEEec--CCEEEEEEEEcCCCCCHHHHHHhcCccccCCCC---CCCCccHHHHH
Confidence 3447999999999997 3456788877654 356789999999999999999999855543211 112348887
Q ss_pred -cccccccCCEEEEEeeeC
Q 045475 212 -KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+.+.+.|...
T Consensus 117 ~~~iv~~hgG~i~~~s~~~ 135 (148)
T d1ysra1 117 VAQQAQLHGGTASLENSPL 135 (148)
T ss_dssp HHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHcCCEEEEEEcCC
Confidence 566778999999988754
No 9
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=98.38 E-value=4.4e-07 Score=82.64 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=66.0
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
.-.+|.+||+||+.+ ....|.|.+... ++...|.|.|||.||+++++.++|...+..+... +-.|+||
T Consensus 45 l~~vl~NLl~NAik~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~iF~~F~r~~~~~----~G~GLGL~I~ 115 (146)
T d1id0a_ 45 FVEVMGNVLDNACKY---CLEFVEISARQT--DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR----PGQGVGLAVA 115 (146)
T ss_dssp HHHHHHHHHHHHHHH---CSSEEEEEEEEC--SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC----TTCCSCHHHH
T ss_pred HHHHHHHHHHHHHHh---hcCCEEEEEEee--CCEEEEEEEeeCCCCCHHHHHHHcCCcccCCCCC----CCeeHHHHHH
Confidence 347999999999997 345688877764 3567899999999999999999998666432211 2358887
Q ss_pred cccccccCCEEEEEeeeC
Q 045475 212 KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-++|+.+.|.|...
T Consensus 116 k~iv~~h~G~i~~~s~~~ 133 (146)
T d1id0a_ 116 REITEQYEGKIVAGESML 133 (146)
T ss_dssp HHHHHHTTCEEEEEECTT
T ss_pred HHHHHHcCCEEEEEEcCC
Confidence 666678999999988653
No 10
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
Probab=98.35 E-value=2.3e-07 Score=85.87 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=66.5
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
.-.+|.+||+||+.+ ....|.|.+... ++...|.|.|||.||+++++.++|...+.... ....+-.|+||
T Consensus 48 l~~vl~NLi~NAik~---~~~~i~i~~~~~--~~~~~i~V~D~G~GI~~e~~~~iF~~F~r~~~--~~~~~g~GLGL~iv 120 (161)
T d1bxda_ 48 IKRAVANMVVNAARY---GNGWIKVSSGTE--PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDS--ARTISGTGLGLAIV 120 (161)
T ss_dssp HHHHHHHHHHHHHTT---CCSCEEEEEEEE--TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSC--CCCCCCCSCCCCTT
T ss_pred HHHHHHHHHHHHHHh---CCCeEEEEEEEe--CCEEEEEEEEcCCCCCHHHHHHHhCCceECCC--CCcCCCCCchHHHH
Confidence 347999999999997 235577777653 35678999999999999999999985554322 12334579998
Q ss_pred cccccccCCEEEEEeeeC
Q 045475 212 KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+.+.|.|...
T Consensus 121 k~iv~~hgG~i~v~s~~~ 138 (161)
T d1bxda_ 121 QRIVDNHNGMLELGTSER 138 (161)
T ss_dssp HHHHHHHTSEEEEEEETT
T ss_pred HHHHHHCCCEEEEEEcCC
Confidence 566678999999988753
No 11
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=98.34 E-value=2.2e-07 Score=87.39 Aligned_cols=91 Identities=19% Similarity=0.352 Sum_probs=67.6
Q ss_pred HHHHHHhccchhhhhcC-------CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCC-------
Q 045475 137 GAFAELLDNSLDEVCNG-------ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLAN------- 202 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag-------At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~------- 202 (662)
.+|.+||+||++|...+ ...|.|.+... ++...|.|.|||.||+++++.++|.+.+++|.....
T Consensus 56 qvl~NLl~NAi~~t~~~~~~~~~~~~~I~i~~~~~--~~~v~i~V~D~G~GI~~e~~~~iF~~f~tt~~~~~~~~~~~~~ 133 (193)
T d1gkza2 56 YILPELLKNAMRATMESHLDTPYNVPDVVITIANN--DVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPL 133 (193)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEEC--SSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------------
T ss_pred HHHHHHHHHHHHhcccCceeeccccceEEEEEEcc--CCEEEEEEecCCCCCCHHHHHHhcCCceecccccccccccccc
Confidence 69999999999986322 23577777653 456789999999999999999999988887643211
Q ss_pred -------------ccCcccccc---cccccccCCEEEEEeeeC
Q 045475 203 -------------TIGQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 203 -------------~IG~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
.+.-.|+|| |...-.+|+++.|.|...
T Consensus 134 ~~~~~~~~~~~~~~~~G~GlGL~i~k~ive~~gG~i~v~S~~g 176 (193)
T d1gkza2 134 FGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQG 176 (193)
T ss_dssp -------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cccccccccccccccccCCcCHHHHHHHHHHCCCEEEEEecCC
Confidence 122368887 566678999999999853
No 12
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=98.33 E-value=4.9e-07 Score=88.32 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=77.7
Q ss_pred cccceeeeeChh-hhhhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHH----
Q 045475 112 SVGMDHLRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK---- 185 (662)
Q Consensus 112 ~~~~~~~~~~p~-fL~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee---- 185 (662)
-.++.|++.-|. |+-+.... ......+-|+||||+|...++ ++.|.|.+.. ...|+|.|||.||+.+.
T Consensus 12 L~~lE~Vr~RP~mYiGs~~~~-~gl~~l~~Eil~Na~De~~~~~~~~i~v~i~~-----dgsIsV~ddGrGIPv~~h~~~ 85 (219)
T d1ei1a2 12 LKGLDAVRKRPGMYIGDTDDG-TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA-----DNSVSVQDDGRGIPTGIHPEE 85 (219)
T ss_dssp CCTTHHHHHCTHHHHCCSSSS-HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECT-----TSCEEEEECSSCCCCSBCTTT
T ss_pred ecchhHHHhCCCcEEccCCCc-ccchhhhHhHhhhhhhhhcCCCccceeEEEcC-----CCeEEEEECCccccccccCcc
Confidence 356777777776 55443221 244467889999999998766 6777777653 23599999999999764
Q ss_pred ----HHhhhh-cccccccc---CCCccCcccccccccccccCCEEEEEeeeCC
Q 045475 186 ----MRQCMS-LGYSAKSK---LANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 186 ----l~~~~~-~G~S~K~~---~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
.+-+|. +..+++-. .+-+.|+.|+|.| ++-.+...+.|.+++.+
T Consensus 86 ~~~~~e~if~~l~tg~~fd~~~~~~sgG~nGvG~~-~~NalS~~f~v~~~r~g 137 (219)
T d1ei1a2 86 GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS-VVNALSQKLELVIQREG 137 (219)
T ss_dssp SSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHH-HHHHTEEEEEEEEEETT
T ss_pred CCchhhhhhhhhhhccCCCCCcceeEcCcccccee-EEEEeeeEEEEEEEECC
Confidence 455554 44444422 1346799999986 45568889999988765
No 13
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=98.21 E-value=8.9e-07 Score=83.84 Aligned_cols=91 Identities=18% Similarity=0.318 Sum_probs=67.6
Q ss_pred HHHHHHHhccchhhhhcC------CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCC-----Ccc
Q 045475 136 LGAFAELLDNSLDEVCNG------ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLA-----NTI 204 (662)
Q Consensus 136 f~AIaELVDNAiDA~~ag------At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~-----~~I 204 (662)
..+|.+||+||+++...+ .+.|.|.+... ++...|.|.|||.||+++++.++|...++.+.... ...
T Consensus 62 ~qvl~NLl~NA~~~~~~~~~~~~~~~~I~v~~~~~--~~~~~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~ 139 (190)
T d1jm6a2 62 YHMLFELFKNAMRATVESHESSLTLPPIKIMVALG--EEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPL 139 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCTTSCCCEEEEEEEC--SSEEEEEEEECSCCCCGGGTTGGGCTTCCCSCCC---------
T ss_pred HHHHHHHHHHHHHHhhccCccccccceEEEEEEeC--CeEEEEEEeccCCCCCHHHHHHHhCcceecCCcCcCccccccc
Confidence 479999999999986321 23477777654 36789999999999999999999997777654211 123
Q ss_pred Ccccccc---cccccccCCEEEEEeee
Q 045475 205 GQYGNGF---KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 205 G~fG~Gl---KsAs~rlg~~v~V~Sk~ 228 (662)
+-.|+|| |...-.+|+++.|.|..
T Consensus 140 ~G~GLGL~i~k~ive~hgG~I~v~s~~ 166 (190)
T d1jm6a2 140 AGFGYGLPISRLYAKYFQGDLQLFSME 166 (190)
T ss_dssp CCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 4568887 55566899999999974
No 14
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.96 E-value=1.4e-06 Score=79.54 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=46.7
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEE------EEec--CCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccC
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVD------LLKN--KTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIG 205 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~------i~~~--~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG 205 (662)
....++.+||+||++|...+...+.+. +... ..+....|.|.|||.||+++.+.++|...+++|..
T Consensus 44 ~l~qvl~NLl~NA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~pf~s~k~~------ 117 (156)
T d1r62a_ 44 QIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREG------ 117 (156)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC------------------------
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceeeeccccceeeeccccCCceEEEEEecCCCCCCHHHHHhhcccceecCCC------
Confidence 344799999999999865444322111 1111 01123578999999999999999999977777532
Q ss_pred cccccc---cccccccCCEEEEEeee
Q 045475 206 QYGNGF---KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 206 ~fG~Gl---KsAs~rlg~~v~V~Sk~ 228 (662)
-.|+|| |...-.+|+.+.|.|..
T Consensus 118 G~GLGL~i~~~iv~~hgG~i~v~s~~ 143 (156)
T d1r62a_ 118 GTGLGLSIARNLIDQHSGKIEFTSWP 143 (156)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCchHHHHHHHHHHCCCEEEEEEeC
Confidence 237887 55566899999998864
No 15
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=97.86 E-value=2.9e-06 Score=75.16 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=41.0
Q ss_pred hHHHHHHHHhccchhhhhc-CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccc
Q 045475 134 WALGAFAELLDNSLDEVCN-GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSA 196 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~a-gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~ 196 (662)
+...++.+||+||++|... +.....|.+.....++...|.|.|||.||+++.+.++|..||..
T Consensus 97 ~l~qvl~Nll~NAi~~~~~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~e~l~~if~~~y~~ 160 (179)
T d1ixma_ 97 KLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYED 160 (179)
T ss_dssp HHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---------
T ss_pred hhHHHHHHHHHHHHHHhhhccccchhhhhhhcccccEEEEEEEeCCCCcCHHHHHHHHHhcccc
Confidence 3347999999999998632 23344555554444567899999999999999999999988865
No 16
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.63 E-value=4e-05 Score=65.36 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=41.2
Q ss_pred HHHHHHhccchhhhhc-------CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhh
Q 045475 137 GAFAELLDNSLDEVCN-------GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCM 190 (662)
Q Consensus 137 ~AIaELVDNAiDA~~a-------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~ 190 (662)
.++.+||.||++|... ....|.|.+... ++...|.|.|||.||+++.+.++|
T Consensus 67 qvl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~--~~~v~i~V~D~G~GI~~e~~~~IF 125 (125)
T d1y8oa2 67 HMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLG--KEDLSIKISDLGGGVPLRKIDRLF 125 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHGGGG
T ss_pred HHHHHHHHHHHHhhhccccccCCCceeEEEEeecC--CCEEEEEEEEeCCCcCHHHHcccC
Confidence 6899999999998642 123577766653 467889999999999999998875
No 17
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=97.60 E-value=3.1e-05 Score=74.67 Aligned_cols=90 Identities=31% Similarity=0.313 Sum_probs=64.0
Q ss_pred HHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHH--------HHhhhh-cccccccc---CC
Q 045475 135 ALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK--------MRQCMS-LGYSAKSK---LA 201 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee--------l~~~~~-~G~S~K~~---~~ 201 (662)
....+-|+||||+|...++ ++.|.|.+.. ...|+|.|||.||+.+. .+-+|. +..+++-. .+
T Consensus 27 l~~l~~Eil~Na~De~~~~~~~~i~v~~~~-----dg~i~V~ddG~GIpv~~h~~~~~~~~e~if~~l~~~~~~d~~~~~ 101 (212)
T d1kija2 27 YHHLFKEILDNAVDEALAGYATEILVRLNE-----DGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYK 101 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEEEEEECT-----TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCC
T ss_pred hhhhhhhhhhhhhhhhhhcCCceEEEEEcC-----CCcEEEEECCcccccccccccCcceEEEEEEEEcccccccCCCce
Confidence 3467899999999998765 6777776642 23699999999999854 222333 33333322 23
Q ss_pred CccCcccccccccccccCCEEEEEeeeCC
Q 045475 202 NTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 202 ~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
.+.|+.|+|.| ++-.+...+.|.+++.+
T Consensus 102 ~sgG~hGvGa~-vvNalS~~~~v~v~r~~ 129 (212)
T d1kija2 102 VSGGLHGVGAS-VVNALSEWTVVEVFREG 129 (212)
T ss_dssp CCSCSSTTSHH-HHHHTEEEEEEEEEETT
T ss_pred ecCCCccccce-EEEEeccceEEEEEEec
Confidence 57899999985 45568899999998765
No 18
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.44 E-value=0.0001 Score=72.30 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=61.3
Q ss_pred HHHHHHHHhccchhhhhcC--CceEEEEEEecCCCCeeEEEEEECCCCCCHHH--------HHhhhh-ccccccccC---
Q 045475 135 ALGAFAELLDNSLDEVCNG--ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK--------MRQCMS-LGYSAKSKL--- 200 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~ag--At~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee--------l~~~~~-~G~S~K~~~--- 200 (662)
.+..+-|+|+||+|...+. .+.|.|.|.. ....|+|.|||.||+.+. .+-+|. +..+++-.+
T Consensus 54 l~ki~dEil~Na~D~~~r~~~~~~I~v~i~~----~~~si~V~d~GrGIPv~~h~~~~~~~~e~ift~l~ag~nfd~~~~ 129 (239)
T d1pvga2 54 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEK 129 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSC
T ss_pred ceeecceeeecccchhhhccccceEEEEEeC----CCCEEEEEecCcceeeeeccccccchhheeeEeeccccccccccc
Confidence 3468899999999976543 4677777753 235799999999998753 223454 444444322
Q ss_pred CCccCcccccccccccccCCEEEEEeee
Q 045475 201 ANTIGQYGNGFKTSTMRLGADVIVFSRC 228 (662)
Q Consensus 201 ~~~IG~fG~GlKsAs~rlg~~v~V~Sk~ 228 (662)
+.+.|..|+|.|. +-.+...++|.+..
T Consensus 130 k~sgGlnGvG~~v-vNalS~~f~vev~~ 156 (239)
T d1pvga2 130 KVTGGRNGYGAKL-CNIFSTEFILETAD 156 (239)
T ss_dssp CCCSCCSSCHHHH-HHHTEEEEEEEEEE
T ss_pred eeeCCeeccceee-hhhhhHhhheeeEE
Confidence 3468999999864 55588888877753
No 19
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=97.29 E-value=6.6e-05 Score=70.26 Aligned_cols=74 Identities=32% Similarity=0.322 Sum_probs=53.0
Q ss_pred HHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccc--c-cc
Q 045475 138 AFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNG--F-KT 213 (662)
Q Consensus 138 AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~G--l-Ks 213 (662)
-|-|+||||+|.+.|| ++.|.|.+..+ ..++|.|||.||+-+- ..+ -|..+.. | .+
T Consensus 9 lv~EivDNsiDEa~aG~~~~I~V~l~~D-----~si~V~D~GRGIPvd~---------h~~------~~~~~~e~v~t~S 68 (168)
T d1s14a_ 9 LGQEVIDNSVDEALAGHAKRVDVILHAD-----QSLEVIDDGRGMPVDI---------HPE------EGVPAVELILCIS 68 (168)
T ss_dssp HHHHHHHHHHHHHHTTSCSEEEEEECTT-----SCEEEEECSSCCCCSB---------CTT------TCSBHHHHHHHTS
T ss_pred EEeeeeecHHHHHHcCCCCEEEEEEeCC-----CeEEEEEEecccceee---------ecc------CCCchhhccCcee
Confidence 5789999999999888 89998888642 3699999999999531 110 1111221 1 25
Q ss_pred cccccCCEEEEEeeeCCC
Q 045475 214 STMRLGADVIVFSRCQGT 231 (662)
Q Consensus 214 As~rlg~~v~V~Sk~~g~ 231 (662)
+.-+|...+.|.+++.|.
T Consensus 69 VVNALS~~l~v~v~RdGk 86 (168)
T d1s14a_ 69 VVNALSKRVEVNVRRDGQ 86 (168)
T ss_dssp HHHHHEEEEEEEEEETTE
T ss_pred EeeeccCeEEEEEEECCE
Confidence 666889999999998763
No 20
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}
Probab=97.13 E-value=0.00019 Score=63.96 Aligned_cols=84 Identities=23% Similarity=0.334 Sum_probs=55.2
Q ss_pred HHHHHHhccchhhhhcC--CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccccc
Q 045475 137 GAFAELLDNSLDEVCNG--ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTS 214 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag--At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKsA 214 (662)
.|+.|++.||+.+.-.+ ...|.|.+... ++...|.|.|||.||++ +..++...++.+. ....-|+||. .
T Consensus 42 ~av~E~v~Nai~ha~~~~~~~~I~i~~~~~--~~~l~i~i~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~-i 112 (139)
T d1th8a_ 42 TVVSEAVTNAIIHGYNNDPNGIVSISVIIE--DGVVHLTVRDEGVGIPD--IEEARQPLFTTKP----ELERSGMGFT-I 112 (139)
T ss_dssp HHHHHHHHHHHHTTSTTCTTSEEEEEEEEE--TTEEEEEEEECSSCCSC--HHHHTCCC-----------CCCSCHHH-H
T ss_pred HHHHHhhhhhhheecCCCCCcEEEEEEEEe--cCEEEEEEccccccccc--ccccccccceecc----cCCCchHHHH-H
Confidence 69999999999852111 34677777764 46789999999999974 4455654444321 1223388874 3
Q ss_pred ccccCCEEEEEeeeC
Q 045475 215 TMRLGADVIVFSRCQ 229 (662)
Q Consensus 215 s~rlg~~v~V~Sk~~ 229 (662)
.-++++++.|.|...
T Consensus 113 v~~l~d~i~i~s~~~ 127 (139)
T d1th8a_ 113 MENFMDEVIVESEVN 127 (139)
T ss_dssp HHHHSSEEEEEEETT
T ss_pred HHHhCCEEEEEEcCC
Confidence 456888999888753
No 21
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=45.95 E-value=4 Score=31.23 Aligned_cols=34 Identities=9% Similarity=0.237 Sum_probs=24.8
Q ss_pred cceeeecCcccccccccccccchhhhhcccccccccc
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCH 576 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~ 576 (662)
...+|||+.|.+|--..=+.+.. .+..+++|+|.
T Consensus 28 ~~~mv~Cd~C~~w~H~~C~g~~~---~~~~~~~~~C~ 61 (72)
T d1weea_ 28 GERMLACDGCGVWHHTRCIGINN---ADALPSKFLCF 61 (72)
T ss_dssp SSCEEECSSSCEEEETTTTTCCT---TSCCCSCCCCH
T ss_pred CCeEEEeCCCCCcCchhhcCCcc---ccCCCCcEECc
Confidence 34689999999998666666642 23456889995
No 22
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=42.03 E-value=6.4 Score=29.29 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=22.3
Q ss_pred cceeeecCcccccccccccccchhhhhccccccccccc
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHE 577 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~ 577 (662)
...+||||.|.+|---.=+.+... .....+.|+|..
T Consensus 19 ~~~~I~Cd~C~~w~H~~C~~~~~~--~~~~~~~w~C~~ 54 (64)
T d1we9a_ 19 DEFWICCDLCEMWFHGKCVKITPA--RAEHIKQYKCPS 54 (64)
T ss_dssp SSCEEECSSSCCEEETTTTTCCTT--GGGGCSSCCCHH
T ss_pred CCCEEEcCCCCccCCcccCCcChH--HCCCCCeEECcC
Confidence 356999999999974444444321 112236799964
No 23
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=41.46 E-value=14 Score=30.33 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhhc
Q 045475 599 TRNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRT 656 (662)
Q Consensus 599 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (662)
++-|+..|+.++-+|+++++--.+ +-.|++=..|-.+|+.||.+=++..|.+++.-.
T Consensus 44 ~~eL~~~l~siewdL~dLe~av~~-ve~np~kf~l~~~ei~~Rr~fi~~~~~~I~~~~ 100 (106)
T d1lvfa_ 44 TNELRNNLRSIEWDLEDLDETISI-VEANPRKFNLDATELSIRKAFITSTRQIVRDMK 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHSSGGGGTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-HHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344888999999999999988774 446777778999999999999999999887643
No 24
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.71 E-value=3.5 Score=32.36 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=22.9
Q ss_pred cceeeecCcccccccccccccchhhhhcccc--cccccccC
Q 045475 540 VHQILKGGECSSFKMEYISEFDKRLQEESAS--EDRSCHEA 578 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~--~~~~c~~~ 578 (662)
...+||||.|..|--..=+.+. +++++ +.|+|..=
T Consensus 24 ~~~mI~Cd~C~~W~H~~C~g~~----~~~~~~~~~~~C~~C 60 (79)
T d1wepa_ 24 NHFMIECGLCQDWFHGSCVGIE----EENAVDIDIYHCPDC 60 (79)
T ss_dssp SSCEEEBTTTCCEEEHHHHTCC----HHHHTTCSBBCCTTT
T ss_pred CCcEEECCCCCCcEeccccCcc----hhcCCCCCEEECccC
Confidence 3569999999999744444443 33333 46999754
No 25
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.97 E-value=5.2 Score=30.65 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=23.8
Q ss_pred cceeeecCcccccccccccccchh--hhhccccccccccc
Q 045475 540 VHQILKGGECSSFKMEYISEFDKR--LQEESASEDRSCHE 577 (662)
Q Consensus 540 ~~~~vq~~~c~~w~~~~~~~~~~~--~~~~~~~~~~~c~~ 577 (662)
...+|||+.|.+|=-..=+.+... ......+++|+|..
T Consensus 27 ~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~ 66 (76)
T d1wema_ 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPN 66 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHH
T ss_pred CCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCC
Confidence 456999999999975544444321 11223456799964
No 26
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=29.36 E-value=7.4 Score=32.94 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=18.8
Q ss_pred Ccccccc---cccccccCCEEEEEeeeC
Q 045475 205 GQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 205 G~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
+-.|+|| |...-.+|+.+.|.|...
T Consensus 150 ~G~GLGLai~k~ive~hgG~I~v~S~~g 177 (189)
T d1i58a_ 150 SGRGVGMDVVKNVVESLNGSISIESEKD 177 (189)
T ss_dssp GTCCCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CcCccCHHHHHHHHHHCCCEEEEEecCC
Confidence 3458887 555567999999998754
No 27
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.98 E-value=11 Score=29.65 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=22.8
Q ss_pred ceeeecCcccccccccccccchhhhhccccc-ccccccC
Q 045475 541 HQILKGGECSSFKMEYISEFDKRLQEESASE-DRSCHEA 578 (662)
Q Consensus 541 ~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~-~~~c~~~ 578 (662)
..+|+||.|..|=--.=+.+...-.....|+ .|+|..=
T Consensus 31 ~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C 69 (88)
T d1weva_ 31 NQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARC 69 (88)
T ss_dssp CCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHH
T ss_pred CeEEEcCCCCCccccccCCCcccccccccCCCeEECccc
Confidence 4689999999996444444332222223333 7999753
No 28
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.70 E-value=39 Score=26.27 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 045475 601 NLLSKLKEVENKLRELEKKEK 621 (662)
Q Consensus 601 ~l~~~~~~~~~~~~~~~~~~~ 621 (662)
||+++|+.-+.|++++++|-+
T Consensus 6 nLq~KI~~Kk~qi~~a~~e~K 26 (72)
T d1k4ta1 6 NLQTKIDAKKEQLADARRDLK 26 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999876
No 29
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.72 E-value=13 Score=26.18 Aligned_cols=33 Identities=9% Similarity=0.181 Sum_probs=20.6
Q ss_pred ceeeecCcccccccccccccchhhhhccccc-cccccc
Q 045475 541 HQILKGGECSSFKMEYISEFDKRLQEESASE-DRSCHE 577 (662)
Q Consensus 541 ~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~-~~~c~~ 577 (662)
...|+||.|.+|=--+=+.+. ..++|+ +|+|..
T Consensus 13 ~~~i~Cd~C~~~~H~~C~~p~----~~~~p~~~W~C~~ 46 (51)
T d1f62a_ 13 DKLILCDECNKAFHLFCLRPA----LYEVPDGEWQCPA 46 (51)
T ss_dssp SCCEECTTTCCEECHHHHCTT----CCSCCSSCCSCTT
T ss_pred CCEEEcCCCCCCCCCCCCCCC----CCcCCCCCEECcC
Confidence 467999999998533323332 233444 899974
No 30
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.38 E-value=63 Score=30.43 Aligned_cols=63 Identities=8% Similarity=0.065 Sum_probs=40.6
Q ss_pred ccceEEEEcCcccccc-ccccccCCCCCceeEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHH
Q 045475 437 IQGFNVYHKNRLIKPF-WRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQK 502 (662)
Q Consensus 437 ~qGf~VY~nnRLI~~f-ekVg~~~~s~grGVIGVleanfLePthnKQdFe~t~~y~~L~~~L~e~l~ 502 (662)
..|+-+|+|.=||.-- +.+.+++ -+=|-||||++-|+.+-+-.-...+.+.+++.+.|...+.
T Consensus 67 ~~~ikLY~~rVfI~d~~~~llP~~---L~FvkGVVDS~DlpLNVSRE~LQ~~~~l~kI~~~i~kkv~ 130 (256)
T d1usua_ 67 KNNIKLYVRRVFITDEAEDLIPEW---LSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLI 130 (256)
T ss_dssp -CCEEEEETTEEEESCCTTSSCGG---GTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeeeeccchhhHHHHH---HHHhhhccccccCCcccchhhhcccHHHHHHHHHHHHHHH
Confidence 3599999999999533 2344444 5667899999999998887777777777766666655443
Done!