BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045477
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic
Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In
Complex With 5- Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic
Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In
Complex With 5- Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic
Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In
Complex With 5- Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic
Acid5-Hydroxyferulic Acid 35-O-Methyltransferase
Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic
Acid5-Hydroxyferulic Acid 35-O-Methyltransferase
Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic
Acid5-Hydroxyferulic Acid 35-O-Methyltransferase
Ferulic Acid Complex
Length = 365
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 12 YAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRI 71
+A ++ SVL M +K+ + L L EIIAKAGPGA++S EIA+QLP T N DAP MLDR+
Sbjct: 22 FAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTT-NPDAPVMLDRM 80
Query: 72 LGLLASYGIVECSV 85
L LLA Y I+ CSV
Sbjct: 81 LRLLACYIILTCSV 94
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 1 MANEARDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATK 60
MA A ++ +A ++ SVL MT+K I LGL EI+ AG G L+ +E+AA+LP+
Sbjct: 12 MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAA 70
Query: 61 NKDAPTMLDRILGLLASYGIVECSVDD 87
N +AP M+DRIL LLASY +V C V++
Sbjct: 71 NPEAPDMVDRILRLLASYNVVTCLVEE 97
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 3 NEARDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKA-GPGAKLSASEIAAQLPATKN 61
+ + +E +A ++ +VL M +KA I L + EI+AK+ P +S +EIAAQLP T N
Sbjct: 15 HSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTT-N 73
Query: 62 KDAPTMLDRILGLLASYGIVECSVDDV 88
+AP MLDR+L LLASY +V ++ ++
Sbjct: 74 PEAPVMLDRVLRLLASYSVVTYTLREL 100
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 2 ANEARDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGP-GAKLSASEIAAQLPA-T 59
+ + D A +T V + A I+L LFEIIAKA P GA +S SEIA++LPA T
Sbjct: 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPAST 76
Query: 60 KNKDAPTMLDRILGLLASYGIVECSVDDVD 89
++ D P LDR+L LLASY ++ + ++
Sbjct: 77 QHSDLPNRLDRMLRLLASYSVLTSTTRTIE 106
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 2 ANEARDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGP-GAKLSASEIAAQLPA-T 59
+ + D A +T V + A I+L LFEIIAKA P GA S SEIA++LPA T
Sbjct: 17 SEQTEDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASKLPAST 76
Query: 60 KNKDAPTMLDRILGLLASYGIVECSVDDVD 89
++ D P LDR L LLASY ++ + ++
Sbjct: 77 QHSDLPNRLDRXLRLLASYSVLTSTTRTIE 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,358,637
Number of Sequences: 62578
Number of extensions: 72485
Number of successful extensions: 159
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 6
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)