Query 045477
Match_columns 89
No_of_seqs 123 out of 1001
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 99.7 1.3E-16 4.3E-21 117.1 8.5 78 1-86 1-78 (353)
2 3p9c_A Caffeic acid O-methyltr 99.7 2.7E-16 9.2E-21 115.7 8.9 81 3-85 14-95 (364)
3 3reo_A (ISO)eugenol O-methyltr 99.7 2.4E-16 8.2E-21 116.0 8.6 80 4-84 16-96 (368)
4 1zg3_A Isoflavanone 4'-O-methy 99.5 1E-14 3.5E-19 106.3 7.5 77 4-84 5-81 (358)
5 3dp7_A SAM-dependent methyltra 99.5 9.8E-15 3.4E-19 107.0 7.1 73 5-84 11-83 (363)
6 1fp2_A Isoflavone O-methyltran 99.5 2.1E-14 7.1E-19 104.4 7.6 77 4-84 11-87 (352)
7 2ip2_A Probable phenazine-spec 99.5 4.9E-14 1.7E-18 101.2 8.3 69 8-85 7-75 (334)
8 1fp1_D Isoliquiritigenin 2'-O- 99.5 3.3E-14 1.1E-18 104.1 7.6 81 3-84 16-101 (372)
9 1x19_A CRTF-related protein; m 99.5 3.6E-14 1.2E-18 103.3 7.7 76 1-85 22-98 (359)
10 3lst_A CALO1 methyltransferase 99.5 4.8E-14 1.6E-18 102.5 6.5 69 6-83 19-87 (348)
11 3gwz_A MMCR; methyltransferase 99.5 9.2E-14 3.1E-18 102.0 6.3 71 6-85 35-105 (369)
12 3i53_A O-methyltransferase; CO 99.4 1.3E-13 4.6E-18 99.2 6.1 65 12-85 8-72 (332)
13 2r3s_A Uncharacterized protein 99.4 5.7E-13 1.9E-17 95.2 6.6 65 11-84 8-72 (335)
14 1qzz_A RDMB, aclacinomycin-10- 99.4 7.4E-13 2.5E-17 96.2 6.4 70 6-84 13-82 (374)
15 3mcz_A O-methyltransferase; ad 99.4 5.6E-13 1.9E-17 96.3 5.2 65 11-85 26-90 (352)
16 1tw3_A COMT, carminomycin 4-O- 99.3 7E-12 2.4E-16 90.7 7.7 68 8-84 18-85 (360)
17 2heo_A Z-DNA binding protein 1 97.5 0.00012 4.1E-09 42.0 4.0 47 30-83 11-57 (67)
18 3r0a_A Putative transcriptiona 97.3 0.00022 7.5E-09 45.0 3.9 49 30-85 27-76 (123)
19 2hr3_A Probable transcriptiona 97.3 0.004 1.4E-07 38.8 9.4 50 30-86 36-85 (147)
20 2fu4_A Ferric uptake regulatio 97.2 0.00024 8.3E-09 41.4 3.0 50 31-86 19-73 (83)
21 3mq0_A Transcriptional repress 97.2 0.00029 9.9E-09 50.0 3.7 47 32-85 33-79 (275)
22 1qgp_A Protein (double strande 97.2 0.00049 1.7E-08 40.6 4.0 52 29-85 14-65 (77)
23 1qbj_A Protein (double-strande 97.2 0.00096 3.3E-08 39.9 5.3 54 27-85 8-61 (81)
24 2y75_A HTH-type transcriptiona 97.1 0.0013 4.3E-08 41.4 5.9 46 34-84 14-59 (129)
25 1xn7_A Hypothetical protein YH 97.1 0.0009 3.1E-08 39.7 4.8 44 33-84 6-49 (78)
26 2htj_A P fimbrial regulatory p 97.0 0.00077 2.6E-08 39.3 4.1 45 32-84 3-47 (81)
27 2xrn_A HTH-type transcriptiona 97.0 0.00062 2.1E-08 47.3 4.3 48 32-86 9-56 (241)
28 1y0u_A Arsenical resistance op 97.0 0.0037 1.3E-07 37.2 7.2 50 25-84 27-76 (96)
29 3ech_A MEXR, multidrug resista 97.0 0.0037 1.3E-07 39.0 7.4 51 29-87 37-87 (142)
30 1ub9_A Hypothetical protein PH 97.0 0.0011 3.6E-08 39.2 4.5 53 25-85 12-64 (100)
31 2k02_A Ferrous iron transport 97.0 0.00096 3.3E-08 40.6 4.3 45 33-85 6-50 (87)
32 2o03_A Probable zinc uptake re 97.0 0.0013 4.4E-08 41.8 5.0 57 28-87 10-67 (131)
33 1mkm_A ICLR transcriptional re 96.9 0.0011 3.8E-08 46.0 4.8 46 32-84 11-56 (249)
34 1sfx_A Conserved hypothetical 96.9 0.0013 4.4E-08 38.9 4.4 49 30-86 21-69 (109)
35 1s3j_A YUSO protein; structura 96.9 0.0061 2.1E-07 38.3 7.8 49 31-87 39-87 (155)
36 2jt1_A PEFI protein; solution 96.9 0.001 3.5E-08 39.4 3.8 45 33-84 8-57 (77)
37 2gxg_A 146AA long hypothetical 96.9 0.0089 3E-07 37.1 8.4 48 31-87 39-86 (146)
38 3eco_A MEPR; mutlidrug efflux 96.9 0.0012 4E-08 41.0 4.3 53 30-88 32-84 (139)
39 3bro_A Transcriptional regulat 96.9 0.0017 5.8E-08 40.2 5.0 51 31-87 36-86 (141)
40 2nnn_A Probable transcriptiona 96.9 0.0016 5.3E-08 40.2 4.7 49 30-86 39-87 (140)
41 2fe3_A Peroxide operon regulat 96.8 0.0019 6.5E-08 41.7 5.1 56 29-87 22-78 (145)
42 3fm5_A Transcriptional regulat 96.8 0.0012 4E-08 41.7 3.8 51 30-87 40-90 (150)
43 3bja_A Transcriptional regulat 96.8 0.0021 7.2E-08 39.6 5.0 49 30-86 34-82 (139)
44 3bdd_A Regulatory protein MARR 96.8 0.0021 7.2E-08 39.7 4.9 50 30-87 32-81 (142)
45 1ku9_A Hypothetical protein MJ 96.8 0.0015 5.3E-08 40.5 4.2 46 33-85 30-75 (152)
46 2d1h_A ST1889, 109AA long hypo 96.8 0.0014 4.7E-08 38.9 3.8 37 45-86 35-71 (109)
47 3boq_A Transcriptional regulat 96.8 0.011 3.6E-07 37.4 8.3 49 31-86 49-97 (160)
48 3k0l_A Repressor protein; heli 96.8 0.0028 9.6E-08 40.6 5.5 50 31-88 48-97 (162)
49 3g3z_A NMB1585, transcriptiona 96.8 0.0022 7.5E-08 40.1 4.8 51 30-88 32-82 (145)
50 3kp7_A Transcriptional regulat 96.8 0.016 5.5E-07 36.3 9.0 42 33-83 42-83 (151)
51 3e6m_A MARR family transcripti 96.8 0.0072 2.5E-07 38.6 7.4 49 31-87 55-103 (161)
52 3f3x_A Transcriptional regulat 96.8 0.0099 3.4E-07 37.0 7.9 48 31-87 39-86 (144)
53 3r4k_A Transcriptional regulat 96.8 0.00027 9.1E-09 49.7 0.5 48 32-86 9-56 (260)
54 2oqg_A Possible transcriptiona 96.8 0.0022 7.5E-08 38.8 4.6 46 30-84 22-67 (114)
55 3nrv_A Putative transcriptiona 96.8 0.0017 5.9E-08 40.7 4.2 50 30-87 41-90 (148)
56 1r1u_A CZRA, repressor protein 96.7 0.0024 8.2E-08 38.8 4.7 48 28-84 25-72 (106)
57 3f6o_A Probable transcriptiona 96.7 0.0018 6.1E-08 40.2 4.0 51 25-84 14-64 (118)
58 3jw4_A Transcriptional regulat 96.7 0.0019 6.4E-08 40.7 4.2 50 32-87 44-93 (148)
59 2fbh_A Transcriptional regulat 96.7 0.0026 9E-08 39.4 4.8 50 31-87 39-88 (146)
60 3bpv_A Transcriptional regulat 96.7 0.0019 6.6E-08 39.8 4.2 48 31-86 31-78 (138)
61 3cuo_A Uncharacterized HTH-typ 96.7 0.0014 4.7E-08 38.6 3.3 50 28-85 23-72 (99)
62 2eth_A Transcriptional regulat 96.7 0.0033 1.1E-07 39.8 5.3 50 30-87 45-94 (154)
63 3oop_A LIN2960 protein; protei 96.7 0.0016 5.4E-08 40.7 3.7 50 30-87 38-87 (143)
64 3pqk_A Biofilm growth-associat 96.7 0.0033 1.1E-07 37.7 4.9 50 26-84 20-69 (102)
65 1q1h_A TFE, transcription fact 96.7 0.0025 8.4E-08 38.8 4.3 48 30-84 19-66 (110)
66 1jgs_A Multiple antibiotic res 96.7 0.0032 1.1E-07 38.9 4.9 49 31-87 36-84 (138)
67 2dk5_A DNA-directed RNA polyme 96.7 0.0034 1.2E-07 38.1 4.9 51 31-87 22-72 (91)
68 1u2w_A CADC repressor, cadmium 96.6 0.0026 8.9E-08 39.8 4.4 52 25-84 38-89 (122)
69 2xig_A Ferric uptake regulatio 96.6 0.0041 1.4E-07 40.5 5.4 57 28-87 26-83 (150)
70 2a61_A Transcriptional regulat 96.6 0.0026 8.7E-08 39.6 4.3 49 30-86 34-82 (145)
71 3u2r_A Regulatory protein MARR 96.6 0.0022 7.7E-08 41.3 4.1 52 30-87 47-98 (168)
72 2rdp_A Putative transcriptiona 96.6 0.0033 1.1E-07 39.3 4.8 48 31-86 44-91 (150)
73 3t8r_A Staphylococcus aureus C 96.6 0.0023 8E-08 41.4 4.1 35 45-84 27-61 (143)
74 1z7u_A Hypothetical protein EF 96.6 0.004 1.4E-07 38.3 5.0 45 34-87 27-72 (112)
75 2bv6_A MGRA, HTH-type transcri 96.6 0.0032 1.1E-07 39.1 4.5 50 30-87 38-87 (142)
76 3jth_A Transcription activator 96.6 0.0014 4.7E-08 39.1 2.6 50 26-84 20-69 (98)
77 3cdh_A Transcriptional regulat 96.6 0.0023 7.9E-08 40.4 3.8 48 31-86 45-92 (155)
78 2fbi_A Probable transcriptiona 96.5 0.0026 9E-08 39.3 4.0 49 30-86 37-85 (142)
79 3deu_A Transcriptional regulat 96.5 0.0021 7.3E-08 41.7 3.7 51 30-87 54-104 (166)
80 1lj9_A Transcriptional regulat 96.5 0.003 1E-07 39.3 4.2 49 31-87 31-79 (144)
81 2yu3_A DNA-directed RNA polyme 96.5 0.0028 9.6E-08 39.1 4.0 53 30-88 38-90 (95)
82 3bj6_A Transcriptional regulat 96.5 0.003 1E-07 39.6 4.2 49 31-87 42-90 (152)
83 3lwf_A LIN1550 protein, putati 96.5 0.0038 1.3E-07 41.3 4.8 51 23-84 27-77 (159)
84 2fa5_A Transcriptional regulat 96.5 0.0034 1.2E-07 39.9 4.3 48 31-86 51-98 (162)
85 3b73_A PHIH1 repressor-like pr 96.5 0.0041 1.4E-07 39.1 4.6 47 30-84 14-62 (111)
86 2nyx_A Probable transcriptiona 96.5 0.0031 1.1E-07 40.7 4.1 50 30-87 46-95 (168)
87 3nqo_A MARR-family transcripti 96.5 0.018 6.2E-07 38.0 8.0 54 29-88 41-94 (189)
88 2hzt_A Putative HTH-type trans 96.5 0.0045 1.5E-07 37.8 4.6 37 45-86 26-63 (107)
89 2qww_A Transcriptional regulat 96.4 0.0034 1.2E-07 39.5 3.9 45 31-83 43-87 (154)
90 2o0y_A Transcriptional regulat 96.4 0.001 3.5E-08 46.6 1.5 46 33-85 27-72 (260)
91 2g7u_A Transcriptional regulat 96.4 0.0013 4.6E-08 45.9 2.0 46 32-84 17-62 (257)
92 3cjn_A Transcriptional regulat 96.4 0.0037 1.3E-07 39.8 4.0 49 30-86 53-101 (162)
93 4aik_A Transcriptional regulat 96.4 0.0068 2.3E-07 38.9 5.2 49 34-89 36-84 (151)
94 2pex_A Transcriptional regulat 96.4 0.0036 1.2E-07 39.5 3.8 48 31-86 49-96 (153)
95 1z91_A Organic hydroperoxide r 96.4 0.0033 1.1E-07 39.2 3.6 49 30-86 41-89 (147)
96 2frh_A SARA, staphylococcal ac 96.3 0.0032 1.1E-07 39.2 3.5 52 31-88 39-90 (127)
97 3s2w_A Transcriptional regulat 96.3 0.0035 1.2E-07 39.9 3.6 48 32-87 53-100 (159)
98 3tgn_A ADC operon repressor AD 96.3 0.0038 1.3E-07 38.8 3.7 48 30-86 39-86 (146)
99 4hbl_A Transcriptional regulat 96.3 0.0029 1E-07 39.9 3.1 49 31-87 43-91 (149)
100 2fbk_A Transcriptional regulat 96.3 0.0031 1.1E-07 41.2 3.2 51 31-86 71-121 (181)
101 3mwm_A ZUR, putative metal upt 96.2 0.0051 1.8E-07 39.5 4.1 56 28-86 13-69 (139)
102 2w25_A Probable transcriptiona 96.2 0.0065 2.2E-07 38.8 4.5 47 30-84 8-54 (150)
103 2ia2_A Putative transcriptiona 96.2 0.0012 4.1E-08 46.4 0.8 46 32-84 24-69 (265)
104 2kko_A Possible transcriptiona 96.1 0.002 6.8E-08 39.5 1.7 46 30-84 26-71 (108)
105 2jsc_A Transcriptional regulat 96.1 0.0038 1.3E-07 38.8 3.0 48 28-84 20-67 (118)
106 4b8x_A SCO5413, possible MARR- 96.1 0.0033 1.1E-07 40.1 2.7 40 45-89 50-89 (147)
107 3hsr_A HTH-type transcriptiona 96.1 0.0022 7.7E-08 40.1 1.8 38 45-87 49-86 (140)
108 1r1t_A Transcriptional repress 96.0 0.0067 2.3E-07 38.1 3.8 46 30-84 47-92 (122)
109 2pn6_A ST1022, 150AA long hypo 96.0 0.0073 2.5E-07 38.5 4.0 46 30-83 4-49 (150)
110 2cfx_A HTH-type transcriptiona 96.0 0.0093 3.2E-07 38.0 4.5 47 30-84 6-52 (144)
111 2pg4_A Uncharacterized protein 96.0 0.0053 1.8E-07 36.4 3.1 42 34-82 20-62 (95)
112 3f6v_A Possible transcriptiona 96.0 0.0054 1.9E-07 40.0 3.3 53 23-84 52-104 (151)
113 1ylf_A RRF2 family protein; st 96.0 0.0067 2.3E-07 39.2 3.7 49 24-84 15-63 (149)
114 3k69_A Putative transcription 95.9 0.014 4.6E-07 38.6 5.1 35 45-84 27-61 (162)
115 1tbx_A ORF F-93, hypothetical 95.9 0.0093 3.2E-07 35.4 4.0 47 31-85 10-60 (99)
116 2p5v_A Transcriptional regulat 95.9 0.011 3.8E-07 38.2 4.5 47 30-84 11-57 (162)
117 2lkp_A Transcriptional regulat 95.9 0.011 3.9E-07 36.1 4.2 47 29-84 32-78 (119)
118 1mzb_A Ferric uptake regulatio 95.9 0.013 4.3E-07 37.3 4.5 55 30-86 19-74 (136)
119 2dbb_A Putative HTH-type trans 95.8 0.013 4.5E-07 37.3 4.6 47 30-84 10-56 (151)
120 2fsw_A PG_0823 protein; alpha- 95.8 0.0097 3.3E-07 36.2 3.8 37 45-86 37-74 (107)
121 2fxa_A Protease production reg 95.8 0.0094 3.2E-07 40.2 3.9 49 31-87 50-98 (207)
122 1i1g_A Transcriptional regulat 95.8 0.013 4.6E-07 36.7 4.4 47 30-84 5-51 (141)
123 2cyy_A Putative HTH-type trans 95.7 0.014 4.8E-07 37.3 4.4 46 30-83 8-53 (151)
124 2x4h_A Hypothetical protein SS 95.7 0.015 5E-07 36.3 4.4 35 45-84 30-64 (139)
125 2f2e_A PA1607; transcription f 95.7 0.018 6.1E-07 37.1 4.8 37 45-86 36-72 (146)
126 2k4b_A Transcriptional regulat 95.6 0.0074 2.5E-07 37.0 2.6 51 31-85 37-87 (99)
127 1on2_A Transcriptional regulat 95.6 0.019 6.5E-07 35.9 4.6 35 45-84 21-55 (142)
128 4fx0_A Probable transcriptiona 95.6 0.0083 2.8E-07 38.4 2.8 35 45-84 51-85 (148)
129 1xmk_A Double-stranded RNA-spe 95.6 0.012 4.2E-07 34.9 3.4 47 30-84 12-59 (79)
130 2ia0_A Putative HTH-type trans 95.5 0.018 6.2E-07 38.0 4.5 47 30-84 18-64 (171)
131 2cg4_A Regulatory protein ASNC 95.5 0.017 5.8E-07 36.9 4.2 47 30-84 9-55 (152)
132 1yyv_A Putative transcriptiona 95.5 0.012 4.2E-07 37.3 3.4 37 45-86 47-84 (131)
133 1oyi_A Double-stranded RNA-bin 95.4 0.013 4.4E-07 35.2 3.2 48 29-85 17-64 (82)
134 2hoe_A N-acetylglucosamine kin 95.4 0.011 3.9E-07 43.0 3.6 58 20-86 11-68 (380)
135 2wte_A CSA3; antiviral protein 95.4 0.022 7.6E-07 39.9 4.9 48 30-85 153-200 (244)
136 2lnb_A Z-DNA-binding protein 1 95.4 0.021 7.2E-07 34.2 3.9 48 30-84 20-67 (80)
137 1p4x_A Staphylococcal accessor 95.4 0.017 5.6E-07 40.6 4.1 53 31-89 160-212 (250)
138 1uly_A Hypothetical protein PH 95.3 0.027 9.3E-07 38.0 4.8 50 26-84 17-66 (192)
139 1p6r_A Penicillinase repressor 95.3 0.02 6.7E-07 33.0 3.6 52 30-85 10-61 (82)
140 2p4w_A Transcriptional regulat 95.3 0.025 8.6E-07 38.5 4.6 53 25-86 11-63 (202)
141 2e1c_A Putative HTH-type trans 95.2 0.028 9.6E-07 37.1 4.7 47 29-83 27-73 (171)
142 3i4p_A Transcriptional regulat 95.2 0.017 6E-07 37.5 3.6 46 30-83 4-49 (162)
143 1xd7_A YWNA; structural genomi 95.2 0.022 7.4E-07 36.6 4.0 47 24-84 10-56 (145)
144 1bja_A Transcription regulator 95.1 0.034 1.2E-06 34.2 4.5 43 32-82 19-62 (95)
145 4a5n_A Uncharacterized HTH-typ 95.1 0.033 1.1E-06 35.7 4.5 37 45-86 38-75 (131)
146 3df8_A Possible HXLR family tr 95.1 0.032 1.1E-06 34.3 4.2 35 45-84 39-76 (111)
147 3k2z_A LEXA repressor; winged 95.0 0.032 1.1E-06 37.3 4.3 42 36-84 16-57 (196)
148 1z6r_A MLC protein; transcript 94.9 0.043 1.5E-06 40.1 5.2 54 25-86 12-65 (406)
149 2qvo_A Uncharacterized protein 94.8 0.018 6.2E-07 34.1 2.6 32 45-81 29-60 (95)
150 2xvc_A ESCRT-III, SSO0910; cel 94.8 0.028 9.7E-07 31.7 3.2 45 31-82 12-56 (59)
151 2obp_A Putative DNA-binding pr 94.7 0.041 1.4E-06 33.8 4.0 38 44-86 34-71 (96)
152 2g9w_A Conserved hypothetical 94.7 0.042 1.4E-06 34.6 4.2 53 30-85 10-62 (138)
153 2w57_A Ferric uptake regulatio 94.6 0.023 7.7E-07 36.9 2.9 55 30-86 18-73 (150)
154 1sd4_A Penicillinase repressor 94.6 0.034 1.2E-06 34.0 3.5 52 30-85 11-62 (126)
155 3eyy_A Putative iron uptake re 94.5 0.047 1.6E-06 35.1 4.2 54 29-86 19-73 (145)
156 2zkz_A Transcriptional repress 94.5 0.036 1.2E-06 33.2 3.4 47 29-84 27-73 (99)
157 1z05_A Transcriptional regulat 94.5 0.064 2.2E-06 39.6 5.4 52 26-85 36-87 (429)
158 1hsj_A Fusion protein consisti 94.4 0.033 1.1E-06 41.2 3.6 52 32-89 407-458 (487)
159 4ets_A Ferric uptake regulatio 94.3 0.057 1.9E-06 35.5 4.3 53 30-85 34-89 (162)
160 2vn2_A DNAD, chromosome replic 94.3 0.048 1.6E-06 34.4 3.8 37 45-86 50-86 (128)
161 1okr_A MECI, methicillin resis 94.2 0.015 5.1E-07 35.5 1.3 51 31-85 12-62 (123)
162 2qm3_A Predicted methyltransfe 94.2 0.032 1.1E-06 40.6 3.2 41 33-83 47-87 (373)
163 2h09_A Transcriptional regulat 94.1 0.14 4.8E-06 32.3 5.7 43 34-84 45-87 (155)
164 1p4x_A Staphylococcal accessor 93.9 0.061 2.1E-06 37.7 4.0 51 33-89 38-88 (250)
165 4g6q_A Putative uncharacterize 93.8 0.036 1.2E-06 37.0 2.5 48 30-85 24-71 (182)
166 1jhg_A Trp operon repressor; c 93.6 0.11 3.7E-06 32.2 4.3 41 28-77 44-84 (101)
167 1j5y_A Transcriptional regulat 93.4 0.11 3.8E-06 34.4 4.5 47 29-82 21-68 (187)
168 2qlz_A Transcription factor PF 93.0 0.03 1E-06 39.2 1.1 50 25-83 8-57 (232)
169 3u1d_A Uncharacterized protein 92.8 0.32 1.1E-05 32.1 5.9 50 30-84 30-79 (151)
170 1r7j_A Conserved hypothetical 92.5 0.25 8.4E-06 29.7 4.7 44 34-84 10-53 (95)
171 3cta_A Riboflavin kinase; stru 92.1 0.13 4.5E-06 34.9 3.5 49 31-84 9-60 (230)
172 3hrs_A Metalloregulator SCAR; 92.0 0.16 5.5E-06 34.4 3.9 36 45-85 19-54 (214)
173 2p5k_A Arginine repressor; DNA 91.3 0.35 1.2E-05 26.0 4.1 29 45-81 18-51 (64)
174 1v4r_A Transcriptional repress 91.3 0.15 5.1E-06 30.4 2.7 36 45-85 33-69 (102)
175 2oz6_A Virulence factor regula 91.1 0.18 6.2E-06 32.4 3.2 34 46-84 164-197 (207)
176 2v79_A DNA replication protein 91.0 0.24 8.2E-06 31.7 3.7 35 45-84 50-84 (135)
177 2w48_A Sorbitol operon regulat 91.0 0.26 9E-06 35.0 4.2 33 45-82 20-52 (315)
178 2gau_A Transcriptional regulat 90.8 0.28 9.7E-06 32.2 4.0 35 45-84 179-213 (232)
179 3e97_A Transcriptional regulat 90.7 0.24 8.1E-06 32.5 3.6 34 46-84 175-208 (231)
180 3dv8_A Transcriptional regulat 90.7 0.25 8.5E-06 32.1 3.6 34 46-84 169-202 (220)
181 3ryp_A Catabolite gene activat 90.7 0.21 7.2E-06 32.2 3.2 35 46-85 167-201 (210)
182 3iwz_A CAP-like, catabolite ac 90.4 0.23 7.8E-06 32.5 3.2 35 46-85 187-221 (230)
183 3tqn_A Transcriptional regulat 90.3 0.25 8.4E-06 30.2 3.1 37 44-85 30-67 (113)
184 2zcw_A TTHA1359, transcription 90.3 0.24 8.3E-06 32.0 3.2 34 46-84 146-179 (202)
185 2ek5_A Predicted transcription 90.3 0.42 1.4E-05 30.1 4.3 37 44-85 25-62 (129)
186 3b02_A Transcriptional regulat 90.1 0.26 8.8E-06 31.7 3.2 34 46-84 139-172 (195)
187 2fmy_A COOA, carbon monoxide o 90.0 0.26 8.8E-06 32.2 3.2 34 46-84 167-200 (220)
188 1ft9_A Carbon monoxide oxidati 89.9 0.28 9.6E-06 32.1 3.4 34 46-84 163-196 (222)
189 4ev0_A Transcription regulator 89.9 0.26 8.9E-06 31.9 3.2 35 45-84 162-196 (216)
190 3d0s_A Transcriptional regulat 89.9 0.31 1.1E-05 31.9 3.6 34 46-84 177-210 (227)
191 4esf_A PADR-like transcription 89.8 1.1 3.9E-05 27.6 6.0 51 26-85 8-64 (117)
192 2bgc_A PRFA; bacterial infecti 89.8 0.43 1.5E-05 31.7 4.2 34 46-84 169-203 (238)
193 3dkw_A DNR protein; CRP-FNR, H 89.8 0.26 9E-06 32.1 3.1 35 45-84 177-211 (227)
194 3la7_A Global nitrogen regulat 89.5 0.34 1.2E-05 32.3 3.6 35 45-84 192-226 (243)
195 3e6c_C CPRK, cyclic nucleotide 89.4 0.33 1.1E-05 32.4 3.5 35 46-85 177-211 (250)
196 2b0l_A GTP-sensing transcripti 89.4 0.3 1E-05 29.7 3.0 36 45-85 41-77 (102)
197 3u5c_Z RP45, S31, YS23, 40S ri 89.2 0.47 1.6E-05 29.8 3.8 47 34-85 46-93 (108)
198 1stz_A Heat-inducible transcri 89.2 0.56 1.9E-05 34.2 4.8 40 37-84 30-71 (338)
199 1yg2_A Gene activator APHA; vi 89.1 0.65 2.2E-05 30.4 4.7 48 30-85 3-57 (179)
200 3by6_A Predicted transcription 88.7 0.37 1.3E-05 30.1 3.1 37 44-85 32-69 (126)
201 1zyb_A Transcription regulator 88.6 0.34 1.2E-05 32.0 3.1 34 46-84 186-219 (232)
202 2xzm_8 RPS25E,; ribosome, tran 88.4 0.34 1.2E-05 31.8 2.8 46 34-84 49-96 (143)
203 3frw_A Putative Trp repressor 88.3 0.65 2.2E-05 29.0 4.0 40 28-77 45-84 (107)
204 3pfi_A Holliday junction ATP-d 88.3 0.65 2.2E-05 32.4 4.5 48 32-85 266-314 (338)
205 3c7j_A Transcriptional regulat 88.2 0.49 1.7E-05 32.4 3.7 38 43-85 46-83 (237)
206 3neu_A LIN1836 protein; struct 88.2 0.58 2E-05 29.1 3.8 37 44-85 34-71 (125)
207 1bia_A BIRA bifunctional prote 87.9 0.48 1.6E-05 34.0 3.6 46 31-84 7-52 (321)
208 1sfu_A 34L protein; protein/Z- 87.8 1.3 4.4E-05 26.0 4.8 37 45-86 28-64 (75)
209 3l7w_A Putative uncharacterize 87.7 0.6 2E-05 28.2 3.5 49 28-85 8-60 (108)
210 2z99_A Putative uncharacterize 87.6 0.57 2E-05 32.6 3.8 45 32-87 103-147 (219)
211 3f8b_A Transcriptional regulat 87.4 2.1 7.3E-05 26.1 6.0 52 25-85 8-67 (116)
212 3kcc_A Catabolite gene activat 87.4 0.45 1.5E-05 32.2 3.1 34 46-84 217-250 (260)
213 3lsg_A Two-component response 87.2 1.3 4.3E-05 26.0 4.7 40 34-78 7-46 (103)
214 3kor_A Possible Trp repressor; 87.0 0.91 3.1E-05 28.9 4.2 41 27-77 61-101 (119)
215 2gqq_A Leucine-responsive regu 86.7 0.11 3.7E-06 33.6 -0.3 46 30-83 14-59 (163)
216 1xma_A Predicted transcription 86.5 0.8 2.7E-05 29.4 3.8 50 27-85 39-96 (145)
217 2k9s_A Arabinose operon regula 86.4 1.5 5E-05 25.9 4.7 40 34-78 8-47 (107)
218 4ham_A LMO2241 protein; struct 86.3 0.61 2.1E-05 29.1 3.1 37 44-85 35-72 (134)
219 3fx3_A Cyclic nucleotide-bindi 86.3 0.54 1.8E-05 30.9 3.0 31 45-80 177-207 (237)
220 3mn2_A Probable ARAC family tr 86.3 1 3.5E-05 26.6 4.0 39 34-78 7-45 (108)
221 2esh_A Conserved hypothetical 86.1 3.1 0.00011 25.3 6.3 56 26-85 10-69 (118)
222 2pjp_A Selenocysteine-specific 86.0 0.75 2.5E-05 28.4 3.3 37 45-86 19-55 (121)
223 3hhh_A Transcriptional regulat 86.0 1.8 6.1E-05 26.6 5.1 52 25-85 9-66 (116)
224 1fx7_A Iron-dependent represso 85.7 1.1 3.9E-05 30.3 4.4 34 47-85 25-58 (230)
225 3oou_A LIN2118 protein; protei 85.4 1.2 4.2E-05 26.3 4.0 40 34-79 10-49 (108)
226 1tc3_C Protein (TC3 transposas 85.3 0.48 1.6E-05 23.4 1.9 29 46-79 21-49 (51)
227 1t6s_A Conserved hypothetical 85.2 0.38 1.3E-05 32.0 1.7 45 32-87 97-141 (162)
228 2vxz_A Pyrsv_GP04; viral prote 84.7 0.77 2.6E-05 30.7 3.0 45 32-85 14-58 (165)
229 3rkx_A Biotin-[acetyl-COA-carb 84.2 1.6 5.5E-05 31.5 4.9 48 31-84 5-52 (323)
230 3oio_A Transcriptional regulat 83.9 1.4 4.7E-05 26.3 3.8 40 34-79 12-51 (113)
231 2o0m_A Transcriptional regulat 83.5 0.22 7.5E-06 36.0 0.0 42 33-82 24-65 (345)
232 2qq9_A Diphtheria toxin repres 83.5 1.5 5.1E-05 29.7 4.2 36 45-85 23-58 (226)
233 3sxy_A Transcriptional regulat 83.3 0.82 2.8E-05 30.5 2.8 39 43-86 32-70 (218)
234 2qlz_A Transcription factor PF 83.1 0.98 3.4E-05 31.3 3.2 44 32-84 168-211 (232)
235 2fq3_A Transcription regulator 82.9 3.9 0.00013 25.3 5.6 54 24-83 46-99 (104)
236 1o5l_A Transcriptional regulat 82.9 0.24 8.3E-06 32.4 0.0 34 46-84 164-197 (213)
237 1lva_A Selenocysteine-specific 82.4 2.7 9.3E-05 29.1 5.3 50 30-85 142-191 (258)
238 4esb_A Transcriptional regulat 82.3 1.8 6.3E-05 26.5 3.9 48 30-85 10-62 (115)
239 3ic7_A Putative transcriptiona 81.9 0.32 1.1E-05 30.4 0.3 37 44-85 32-69 (126)
240 3mkl_A HTH-type transcriptiona 81.9 2 6.8E-05 25.9 4.0 36 33-74 11-46 (120)
241 2hs5_A Putative transcriptiona 80.9 1.3 4.4E-05 30.2 3.1 39 43-86 48-86 (239)
242 1bl0_A Protein (multiple antib 80.8 1.9 6.5E-05 26.4 3.7 39 34-78 16-54 (129)
243 2o3f_A Putative HTH-type trans 80.8 1.2 4.1E-05 27.3 2.7 43 30-77 22-65 (111)
244 1hw1_A FADR, fatty acid metabo 79.2 1.9 6.5E-05 28.8 3.5 38 43-85 27-65 (239)
245 3iwf_A Transcription regulator 79.0 1.4 4.7E-05 27.0 2.5 41 31-76 19-60 (107)
246 3ihu_A Transcriptional regulat 78.8 1.8 6.3E-05 28.8 3.3 39 43-86 36-74 (222)
247 1jko_C HIN recombinase, DNA-in 78.5 1.5 5.3E-05 21.8 2.3 23 46-73 21-43 (52)
248 1uxc_A FRUR (1-57), fructose r 78.5 1.3 4.6E-05 24.7 2.2 20 48-72 2-21 (65)
249 3bwg_A Uncharacterized HTH-typ 78.0 3 0.0001 28.4 4.2 37 44-85 26-63 (239)
250 3iz6_V 40S ribosomal protein S 77.8 0.43 1.5E-05 30.0 -0.1 35 45-84 59-93 (108)
251 3edp_A LIN2111 protein; APC883 76.2 3.4 0.00012 28.1 4.1 37 44-85 30-67 (236)
252 2p8t_A Hypothetical protein PH 76.2 2.7 9.1E-05 28.8 3.5 36 45-85 29-64 (200)
253 3qph_A TRMB, A global transcri 75.7 0.14 5E-06 37.3 -3.1 47 31-85 20-66 (342)
254 2wv0_A YVOA, HTH-type transcri 75.5 3.4 0.00012 28.2 4.0 36 44-84 31-67 (243)
255 3lmm_A Uncharacterized protein 75.2 3.1 0.0001 32.4 4.1 47 31-85 432-483 (583)
256 2di3_A Bacterial regulatory pr 75.2 2.7 9.1E-05 28.3 3.4 36 43-83 24-60 (239)
257 2qc0_A Uncharacterized protein 73.4 3 0.0001 30.4 3.5 45 33-85 301-345 (373)
258 2x48_A CAG38821; archeal virus 73.1 2.3 7.7E-05 22.0 2.1 23 46-73 31-53 (55)
259 3eqx_A FIC domain containing t 72.9 3.1 0.00011 30.6 3.5 45 34-86 302-346 (373)
260 2l0k_A Stage III sporulation p 72.4 2.5 8.7E-05 25.3 2.4 33 33-74 11-43 (93)
261 3elk_A Putative transcriptiona 71.9 8.8 0.0003 23.4 4.9 57 25-85 10-67 (117)
262 3lmm_A Uncharacterized protein 71.8 0.8 2.7E-05 35.7 0.0 46 32-85 519-564 (583)
263 3f8m_A GNTR-family protein tra 70.3 5.5 0.00019 27.3 4.0 35 44-83 33-68 (248)
264 2pij_A Prophage PFL 6 CRO; tra 69.8 5.6 0.00019 21.1 3.3 32 33-74 5-36 (67)
265 3eet_A Putative GNTR-family tr 69.3 5.1 0.00017 27.9 3.7 37 44-85 50-87 (272)
266 2jpc_A SSRB; DNA binding prote 68.2 6.1 0.00021 20.5 3.2 28 32-69 4-31 (61)
267 2xi8_A Putative transcription 67.3 6.6 0.00022 20.3 3.2 24 45-73 13-36 (66)
268 1ku3_A Sigma factor SIGA; heli 66.9 4.4 0.00015 22.2 2.5 21 45-70 29-49 (73)
269 1cf7_A Protein (transcription 66.2 8.5 0.00029 22.2 3.7 45 35-84 20-64 (76)
270 2elj_A Transcriptional adapter 66.1 14 0.00048 21.7 4.8 48 27-81 41-88 (88)
271 4a0z_A Transcription factor FA 65.9 7.1 0.00024 26.0 3.8 43 32-82 15-57 (190)
272 1hqc_A RUVB; extended AAA-ATPa 65.6 12 0.0004 25.5 5.0 47 33-84 251-298 (324)
273 3dn7_A Cyclic nucleotide bindi 64.4 1.4 4.8E-05 27.9 0.0 27 45-76 167-193 (194)
274 2pi2_A Replication protein A 3 64.0 1.4 4.9E-05 30.9 0.0 51 30-84 208-258 (270)
275 3omt_A Uncharacterized protein 63.9 7.2 0.00025 20.9 3.0 24 45-73 20-43 (73)
276 1in4_A RUVB, holliday junction 63.4 9 0.00031 26.9 4.1 48 33-85 263-311 (334)
277 1u8b_A ADA polyprotein; protei 63.3 6.5 0.00022 23.9 3.0 30 45-79 92-121 (133)
278 3b7h_A Prophage LP1 protein 11 63.2 11 0.00038 20.1 3.7 23 45-72 19-41 (78)
279 1d5y_A ROB transcription facto 63.0 6.7 0.00023 26.6 3.3 40 34-79 8-47 (292)
280 1neq_A DNA-binding protein NER 62.9 4.2 0.00014 23.0 1.9 23 45-72 21-43 (74)
281 2p7v_B Sigma-70, RNA polymeras 62.9 5.7 0.00019 21.4 2.4 23 45-72 24-46 (68)
282 2b5a_A C.BCLI; helix-turn-heli 62.0 13 0.00046 19.7 3.9 23 45-72 22-44 (77)
283 1tty_A Sigma-A, RNA polymerase 61.6 6.1 0.00021 22.5 2.5 21 45-70 37-57 (87)
284 3f2g_A Alkylmercury lyase; MER 61.6 5.6 0.00019 27.6 2.7 37 32-76 25-61 (220)
285 1fse_A GERE; helix-turn-helix 61.2 8 0.00027 20.7 2.9 32 31-72 16-47 (74)
286 3ri2_A Transcriptional regulat 61.1 14 0.00049 22.8 4.3 51 25-85 17-72 (123)
287 2l8n_A Transcriptional repress 61.0 3.5 0.00012 23.0 1.3 13 46-59 9-21 (67)
288 2qen_A Walker-type ATPase; unk 60.6 13 0.00045 25.2 4.5 45 31-84 284-333 (350)
289 2ra5_A Putative transcriptiona 60.4 2.4 8.2E-05 29.0 0.6 35 45-84 38-73 (247)
290 2o38_A Hypothetical protein; a 59.9 20 0.00068 21.8 4.8 14 45-59 52-65 (120)
291 2a6c_A Helix-turn-helix motif; 59.8 13 0.00045 20.6 3.7 24 45-73 30-53 (83)
292 3bs3_A Putative DNA-binding pr 59.7 11 0.00037 20.1 3.3 23 45-72 22-44 (76)
293 3t76_A VANU, transcriptional r 59.5 8 0.00027 22.5 2.8 24 45-73 36-59 (88)
294 1jhf_A LEXA repressor; LEXA SO 59.5 18 0.00061 23.4 4.8 32 47-83 26-58 (202)
295 2dql_A PEX protein; circadian 59.1 11 0.00037 22.9 3.5 44 34-85 27-76 (115)
296 1sgm_A Putative HTH-type trans 58.5 11 0.00038 22.9 3.5 22 36-59 17-38 (191)
297 1y7y_A C.AHDI; helix-turn-heli 57.4 12 0.00041 19.7 3.2 23 45-72 25-47 (74)
298 1zug_A Phage 434 CRO protein; 57.3 12 0.0004 19.5 3.1 23 45-72 15-37 (71)
299 2r1j_L Repressor protein C2; p 57.1 6.5 0.00022 20.4 2.0 24 45-73 17-40 (68)
300 3gbg_A TCP pilus virulence reg 56.6 12 0.00042 25.1 3.7 35 34-74 174-208 (276)
301 2zcm_A Biofilm operon icaabcd 56.1 13 0.00045 22.9 3.6 37 23-70 10-46 (192)
302 3f1b_A TETR-like transcription 56.0 13 0.00044 22.8 3.5 28 37-70 26-53 (203)
303 1adr_A P22 C2 repressor; trans 55.9 6.8 0.00023 20.9 2.0 24 45-73 17-40 (76)
304 3s8q_A R-M controller protein; 55.8 19 0.00066 19.5 3.9 23 45-72 23-45 (82)
305 2jn6_A Protein CGL2762, transp 55.7 9.5 0.00033 21.9 2.7 30 46-80 23-52 (97)
306 3qkx_A Uncharacterized HTH-typ 55.6 11 0.00039 22.8 3.2 28 37-70 20-47 (188)
307 1r69_A Repressor protein CI; g 55.4 13 0.00046 19.2 3.1 23 45-72 13-35 (69)
308 2l02_A Uncharacterized protein 55.0 22 0.00074 21.0 4.1 39 33-79 12-50 (82)
309 2o8x_A Probable RNA polymerase 54.8 9.2 0.00032 20.2 2.4 21 45-70 30-50 (70)
310 3eyi_A Z-DNA-binding protein 1 54.7 22 0.00075 20.5 4.0 45 31-83 12-57 (72)
311 2zfw_A PEX; five alpha-helices 54.6 12 0.00041 24.0 3.2 43 34-85 49-98 (148)
312 3qq6_A HTH-type transcriptiona 54.6 8 0.00027 21.4 2.1 24 45-73 22-45 (78)
313 3ulq_B Transcriptional regulat 54.3 15 0.00052 21.2 3.4 30 30-69 33-62 (90)
314 1gdt_A GD resolvase, protein ( 54.2 12 0.0004 24.1 3.2 23 46-73 158-180 (183)
315 3dpj_A Transcription regulator 54.2 12 0.00041 23.0 3.1 28 37-70 20-47 (194)
316 3ppb_A Putative TETR family tr 54.1 13 0.00043 22.7 3.2 29 36-70 20-48 (195)
317 3cuq_B Vacuolar protein-sortin 53.9 18 0.00061 24.7 4.2 35 45-84 167-201 (218)
318 2k9q_A Uncharacterized protein 53.7 7.7 0.00026 21.1 2.0 23 45-72 14-36 (77)
319 3c18_A Nucleotidyltransferase- 53.6 30 0.001 25.0 5.4 65 13-85 207-273 (290)
320 3g5g_A Regulatory protein; tra 53.6 20 0.00069 20.8 3.9 24 45-73 40-63 (99)
321 1r71_A Transcriptional repress 53.1 7 0.00024 26.0 1.9 26 46-76 52-77 (178)
322 1pdn_C Protein (PRD paired); p 53.1 11 0.00039 21.8 2.8 32 46-82 33-64 (128)
323 3bqz_B HTH-type transcriptiona 53.0 16 0.00054 22.3 3.6 27 37-69 14-40 (194)
324 3to7_A Histone acetyltransfera 52.8 13 0.00044 26.7 3.4 47 19-84 192-238 (276)
325 2kpj_A SOS-response transcript 52.7 12 0.00041 21.2 2.8 23 45-72 21-43 (94)
326 2wiu_B HTH-type transcriptiona 52.7 18 0.00061 19.8 3.5 24 45-73 24-47 (88)
327 2gmg_A Hypothetical protein PF 52.5 6.7 0.00023 24.3 1.6 25 30-59 12-36 (105)
328 3kz3_A Repressor protein CI; f 52.4 10 0.00036 20.7 2.4 23 45-72 24-46 (80)
329 1pb6_A Hypothetical transcript 52.1 16 0.00055 22.6 3.5 28 37-70 30-57 (212)
330 3f6w_A XRE-family like protein 52.1 8.4 0.00029 21.1 2.0 24 45-73 26-49 (83)
331 1y6u_A XIS, excisionase from t 51.6 7.8 0.00027 21.9 1.7 25 45-74 15-39 (70)
332 1je8_A Nitrate/nitrite respons 51.1 14 0.00048 20.7 2.9 20 45-69 35-54 (82)
333 3h5n_A MCCB protein; ubiquitin 51.0 18 0.00062 26.1 4.0 35 45-84 50-84 (353)
334 2rae_A Transcriptional regulat 50.9 17 0.00059 22.5 3.5 28 37-70 29-56 (207)
335 3t72_q RNA polymerase sigma fa 50.5 12 0.00042 22.3 2.6 20 45-69 38-57 (99)
336 3l9f_A Putative uncharacterize 50.3 10 0.00035 25.6 2.4 48 33-85 40-91 (204)
337 2yve_A Transcriptional regulat 50.2 15 0.00053 22.7 3.2 28 36-69 15-42 (185)
338 2dce_A KIAA1915 protein; swirm 50.2 12 0.0004 23.2 2.5 54 26-84 49-103 (111)
339 3lwj_A Putative TETR-family tr 50.2 15 0.0005 22.7 3.1 28 37-70 24-51 (202)
340 2qko_A Possible transcriptiona 50.1 21 0.00071 22.4 3.9 27 37-69 40-66 (215)
341 2xub_A DNA-directed RNA polyme 49.9 66 0.0022 24.5 7.2 60 9-85 8-67 (534)
342 3lhq_A Acrab operon repressor 49.9 15 0.00051 22.7 3.1 29 36-70 25-53 (220)
343 3hug_A RNA polymerase sigma fa 49.7 12 0.0004 21.4 2.4 20 45-69 52-71 (92)
344 1x3u_A Transcriptional regulat 49.2 19 0.00065 19.4 3.2 22 45-71 30-51 (79)
345 2ict_A Antitoxin HIGA; helix-t 49.1 12 0.0004 21.1 2.3 24 45-73 20-43 (94)
346 2ns0_A Hypothetical protein; r 49.0 40 0.0014 20.0 5.2 52 29-82 7-60 (85)
347 2ef8_A C.ECOT38IS, putative tr 49.0 10 0.00035 20.6 2.0 23 45-72 22-44 (84)
348 3knw_A Putative transcriptiona 49.0 16 0.00054 22.7 3.1 28 37-70 26-53 (212)
349 1p4w_A RCSB; solution structur 48.9 22 0.00074 21.0 3.6 36 30-75 38-77 (99)
350 1ldj_A Cullin homolog 1, CUL-1 48.8 10 0.00036 30.2 2.6 33 45-82 602-634 (760)
351 2fd5_A Transcriptional regulat 48.5 15 0.0005 22.4 2.9 21 37-59 19-39 (180)
352 2dg7_A Putative transcriptiona 48.2 15 0.0005 22.7 2.9 28 37-70 19-46 (195)
353 2fq4_A Transcriptional regulat 47.7 17 0.00058 22.5 3.1 28 37-70 24-51 (192)
354 2jrt_A Uncharacterized protein 47.7 30 0.001 20.5 4.1 31 45-80 48-78 (95)
355 3bru_A Regulatory protein, TET 47.6 18 0.00061 22.7 3.2 29 36-70 41-69 (222)
356 3vk0_A NHTF, transcriptional r 47.5 22 0.00074 20.9 3.4 23 45-72 33-55 (114)
357 3c57_A Two component transcrip 47.3 24 0.00082 20.3 3.6 36 31-76 32-71 (95)
358 3dcf_A Transcriptional regulat 47.3 18 0.00063 22.4 3.2 29 36-70 42-70 (218)
359 3b81_A Transcriptional regulat 47.1 14 0.00047 22.8 2.6 27 37-69 23-49 (203)
360 2k9l_A RNA polymerase sigma fa 46.9 18 0.00061 20.5 2.8 26 47-77 49-74 (76)
361 3on4_A Transcriptional regulat 46.8 12 0.00043 22.7 2.3 28 37-70 22-49 (191)
362 3kz9_A SMCR; transcriptional r 46.6 19 0.00065 22.0 3.2 28 37-70 29-56 (206)
363 2wus_R RODZ, putative uncharac 46.5 16 0.00054 22.1 2.7 22 45-71 19-40 (112)
364 3kjx_A Transcriptional regulat 46.4 11 0.00037 26.0 2.2 24 45-73 9-32 (344)
365 3maj_A DNA processing chain A; 46.3 8.5 0.00029 28.7 1.7 44 32-84 331-374 (382)
366 3he0_A Transcriptional regulat 46.2 14 0.00049 22.5 2.6 27 37-69 23-49 (196)
367 3vpr_A Transcriptional regulat 46.2 19 0.00063 22.2 3.1 27 38-70 16-42 (190)
368 2q24_A Putative TETR family tr 45.7 22 0.00077 21.9 3.5 27 37-70 27-53 (194)
369 2dg8_A Putative TETR-family tr 45.4 14 0.00048 22.9 2.4 27 37-69 21-47 (193)
370 1y9q_A Transcriptional regulat 45.4 34 0.0012 21.7 4.4 23 45-72 23-45 (192)
371 4fe7_A Xylose operon regulator 45.4 21 0.00072 25.4 3.6 38 35-78 311-348 (412)
372 2oi8_A Putative regulatory pro 45.3 18 0.00063 23.2 3.1 28 36-69 27-54 (216)
373 3i71_A Ethanolamine utilizatio 45.3 39 0.0013 18.9 4.7 44 36-86 10-53 (68)
374 2e1n_A PEX, period extender; c 45.3 16 0.00054 23.0 2.7 43 34-85 39-88 (138)
375 2elh_A CG11849-PA, LD40883P; s 45.3 15 0.0005 20.9 2.3 26 46-76 38-63 (87)
376 3s5r_A Transcriptional regulat 45.3 23 0.00079 21.9 3.5 27 38-70 23-49 (216)
377 3jsj_A Putative TETR-family tr 45.2 19 0.00065 22.0 3.0 27 37-70 21-47 (190)
378 2hyt_A TETR-family transcripti 45.1 22 0.00074 22.1 3.3 27 38-70 25-51 (197)
379 3vp5_A Transcriptional regulat 45.1 21 0.0007 22.2 3.2 28 37-70 24-51 (189)
380 2xdn_A HTH-type transcriptiona 45.1 23 0.00078 22.1 3.4 20 38-59 24-43 (210)
381 2eh3_A Transcriptional regulat 45.1 20 0.00068 21.9 3.1 26 38-69 15-40 (179)
382 2ibd_A Possible transcriptiona 45.1 23 0.0008 22.0 3.5 20 38-59 27-46 (204)
383 3ljx_A MMOQ response regulator 45.0 14 0.00048 25.7 2.6 36 33-77 24-59 (288)
384 2g7s_A Transcriptional regulat 44.9 14 0.00048 22.4 2.3 28 37-70 20-47 (194)
385 3f0c_A TETR-molecule A, transc 44.7 20 0.00068 22.3 3.1 27 38-70 24-50 (216)
386 1lmb_3 Protein (lambda repress 44.7 13 0.00043 20.7 2.0 23 45-72 29-51 (92)
387 3m1t_A Putative phosphohydrola 44.6 13 0.00045 25.6 2.4 36 33-77 23-58 (275)
388 1z4h_A TORI, TOR inhibition pr 44.5 12 0.00041 20.3 1.8 25 45-74 9-33 (66)
389 1k78_A Paired box protein PAX5 44.5 18 0.00063 22.1 2.8 32 46-82 48-79 (149)
390 3trb_A Virulence-associated pr 44.4 14 0.00049 21.9 2.2 24 45-73 26-49 (104)
391 3dpl_C Cullin-5; ubiquitin, NE 44.3 16 0.00054 26.8 2.9 34 45-83 214-252 (382)
392 2r0q_C Putative transposon TN5 44.0 24 0.00081 23.1 3.5 23 46-73 175-197 (209)
393 3gzi_A Transcriptional regulat 44.0 21 0.00072 22.2 3.1 28 37-70 29-56 (218)
394 3gva_A Alkyltransferase-like p 44.0 40 0.0014 20.9 4.4 40 31-73 7-46 (116)
395 2aqe_A Transcriptional adaptor 43.6 48 0.0017 19.4 4.6 49 27-83 41-89 (90)
396 2w7n_A TRFB transcriptional re 43.5 17 0.00057 22.1 2.4 26 45-75 33-58 (101)
397 3dew_A Transcriptional regulat 43.2 15 0.00052 22.4 2.3 27 38-70 21-47 (206)
398 1u78_A TC3 transposase, transp 43.2 16 0.00055 21.8 2.4 30 46-80 22-51 (141)
399 2d6y_A Putative TETR family re 43.2 22 0.00075 22.3 3.1 27 38-70 21-47 (202)
400 3qbm_A TETR transcriptional re 43.0 40 0.0014 20.4 4.3 28 36-69 18-45 (199)
401 3g7r_A Putative transcriptiona 42.6 22 0.00076 22.6 3.1 28 37-70 47-74 (221)
402 3i7a_A Putative metal-dependen 42.5 12 0.00041 25.8 1.9 28 45-77 40-67 (281)
403 2qtq_A Transcriptional regulat 42.5 23 0.00077 21.9 3.1 27 38-70 29-55 (213)
404 2pq8_A Probable histone acetyl 42.4 10 0.00034 27.3 1.5 31 45-83 207-237 (278)
405 3mzy_A RNA polymerase sigma-H 42.2 17 0.0006 21.8 2.5 20 45-69 123-142 (164)
406 3cec_A Putative antidote prote 42.1 14 0.00049 21.2 2.0 23 45-72 30-52 (104)
407 2guh_A Putative TETR-family tr 42.0 16 0.00055 23.4 2.3 30 36-71 50-79 (214)
408 3c3w_A Two component transcrip 41.8 23 0.00079 22.8 3.1 36 31-76 154-193 (225)
409 1x57_A Endothelial differentia 41.7 20 0.00069 19.9 2.5 23 45-72 25-47 (91)
410 3him_A Probable transcriptiona 41.3 15 0.00051 22.6 2.1 22 37-60 28-49 (211)
411 1vz0_A PARB, chromosome partit 41.2 14 0.00049 25.1 2.1 26 45-75 133-158 (230)
412 3cjd_A Transcriptional regulat 41.1 16 0.00056 22.9 2.3 27 37-69 24-50 (198)
413 2co5_A Viral protein F93; vira 41.0 24 0.00084 20.9 2.9 36 46-84 28-63 (99)
414 3bni_A Putative TETR-family tr 41.0 24 0.00083 22.6 3.1 27 37-69 55-81 (229)
415 3cwr_A Transcriptional regulat 41.0 17 0.00059 22.3 2.3 28 37-70 29-56 (208)
416 3fmy_A HTH-type transcriptiona 40.9 20 0.00067 19.4 2.3 23 45-72 23-45 (73)
417 3ccy_A Putative TETR-family tr 40.7 22 0.00074 22.1 2.8 21 37-59 26-46 (203)
418 3eus_A DNA-binding protein; st 40.6 21 0.00071 19.9 2.5 22 45-71 26-47 (86)
419 2hku_A A putative transcriptio 40.6 24 0.00082 22.1 3.0 27 37-70 32-58 (215)
420 2vt3_A REX, redox-sensing tran 40.6 23 0.0008 23.9 3.1 40 30-75 18-57 (215)
421 3keo_A Redox-sensing transcrip 40.5 20 0.00067 24.4 2.7 38 32-75 19-56 (212)
422 3col_A Putative transcription 40.5 14 0.00047 22.5 1.7 21 37-59 22-42 (196)
423 2gen_A Probable transcriptiona 40.3 26 0.0009 21.8 3.2 26 38-69 20-45 (197)
424 2hsg_A Glucose-resistance amyl 40.2 16 0.00056 24.9 2.3 22 47-73 3-24 (332)
425 3rd3_A Probable transcriptiona 40.1 16 0.00055 22.3 2.1 21 37-59 22-42 (197)
426 2o7t_A Transcriptional regulat 40.1 19 0.00064 22.3 2.4 27 37-69 20-46 (199)
427 3mvp_A TETR/ACRR transcription 40.0 18 0.0006 22.4 2.3 27 38-70 39-65 (217)
428 2kif_A O6-methylguanine-DNA me 40.0 21 0.00072 21.9 2.5 39 32-73 6-44 (108)
429 2wui_A MEXZ, transcriptional r 39.7 27 0.00092 21.9 3.2 26 38-69 24-49 (210)
430 2bnm_A Epoxidase; oxidoreducta 39.4 39 0.0013 21.4 3.9 23 45-72 22-44 (198)
431 3cdl_A Transcriptional regulat 39.4 26 0.00088 21.9 3.0 20 38-59 22-41 (203)
432 1xsv_A Hypothetical UPF0122 pr 39.2 26 0.00089 21.0 2.9 20 45-69 40-59 (113)
433 2cuj_A Transcriptional adaptor 39.2 56 0.0019 20.0 4.4 50 26-83 58-107 (108)
434 2rnj_A Response regulator prot 39.2 22 0.00074 20.1 2.4 29 31-69 34-62 (91)
435 1hlv_A CENP-B, major centromer 39.1 34 0.0012 20.3 3.4 35 32-74 14-48 (131)
436 2z99_A Putative uncharacterize 39.0 22 0.00076 24.5 2.8 27 45-76 29-55 (219)
437 1b0n_A Protein (SINR protein); 38.9 31 0.0011 19.6 3.2 23 45-72 13-35 (111)
438 3egq_A TETR family transcripti 38.9 14 0.00049 22.2 1.7 28 37-70 16-43 (170)
439 3anp_C Transcriptional repress 38.9 27 0.00094 21.6 3.1 20 38-59 22-41 (204)
440 3h5t_A Transcriptional regulat 38.9 14 0.00049 25.6 1.8 24 45-73 8-31 (366)
441 1qpz_A PURA, protein (purine n 38.8 17 0.00057 25.0 2.2 22 47-73 1-22 (340)
442 3v6g_A Probable transcriptiona 38.7 27 0.00093 22.2 3.1 28 37-70 26-53 (208)
443 2nx4_A Transcriptional regulat 38.6 29 0.00098 21.5 3.1 26 38-69 23-48 (194)
444 3rh2_A Hypothetical TETR-like 38.6 20 0.00067 22.5 2.3 27 38-70 16-42 (212)
445 3f52_A CLP gene regulator (CLG 38.5 40 0.0014 19.6 3.6 23 45-72 40-62 (117)
446 2i10_A Putative TETR transcrip 38.5 28 0.00097 21.8 3.1 35 25-70 16-50 (202)
447 2qwt_A Transcriptional regulat 38.5 35 0.0012 21.1 3.5 27 37-70 25-51 (196)
448 1zk8_A Transcriptional regulat 38.3 12 0.00041 22.8 1.2 21 37-59 20-40 (183)
449 2kfs_A Conserved hypothetical 38.2 12 0.00043 24.4 1.3 24 45-73 30-53 (148)
450 3bhq_A Transcriptional regulat 38.2 29 0.00098 21.7 3.1 27 38-70 25-51 (211)
451 3c2b_A Transcriptional regulat 37.9 20 0.00069 22.4 2.3 27 38-70 28-54 (221)
452 3bjb_A Probable transcriptiona 37.8 21 0.00072 22.5 2.4 28 37-70 34-61 (207)
453 3crj_A Transcription regulator 37.6 23 0.00078 22.2 2.5 20 38-59 27-46 (199)
454 1j9i_A GPNU1 DBD;, terminase s 37.6 11 0.00039 20.4 0.9 22 47-73 3-24 (68)
455 2f07_A YVDT; helix-turn-helix, 37.5 30 0.001 21.5 3.1 21 37-59 22-42 (197)
456 2eby_A Putative HTH-type trans 37.4 21 0.00072 20.7 2.2 23 45-72 23-45 (113)
457 2of7_A Putative TETR-family tr 37.3 28 0.00096 22.8 3.0 30 36-71 59-88 (260)
458 2g7g_A RHA04620, putative tran 37.2 25 0.00085 22.7 2.7 20 46-70 29-48 (213)
459 2cmx_A ORF F-112, F112, hypoth 37.2 32 0.0011 21.3 3.0 40 34-78 20-59 (118)
460 3hc1_A Uncharacterized HDOD do 37.0 22 0.00074 24.8 2.5 28 45-77 43-70 (305)
461 1b4a_A Arginine repressor; hel 36.9 37 0.0013 21.8 3.5 37 33-77 9-50 (149)
462 3op9_A PLI0006 protein; struct 36.9 22 0.00077 20.6 2.3 24 45-73 21-44 (114)
463 2zb9_A Putative transcriptiona 36.7 22 0.00075 22.2 2.3 29 36-70 34-62 (214)
464 2qib_A TETR-family transcripti 36.6 22 0.00074 22.8 2.3 29 36-70 24-52 (231)
465 3bd1_A CRO protein; transcript 36.4 23 0.0008 19.2 2.2 21 48-73 13-33 (79)
466 2w53_A Repressor, SMet; antibi 36.3 25 0.00084 22.1 2.6 20 38-59 24-43 (219)
467 1zrv_A Spinigerin; helical pep 36.2 17 0.00058 16.6 1.2 9 69-77 16-24 (26)
468 3l4g_A Phenylalanyl-tRNA synth 36.2 7.5 0.00026 30.1 0.0 48 30-84 6-54 (508)
469 3ni7_A Bacterial regulatory pr 36.2 39 0.0013 21.6 3.6 28 37-70 19-46 (213)
470 3vib_A MTRR; helix-turn-helix 36.2 32 0.0011 21.4 3.1 27 38-70 23-49 (210)
471 3lfp_A CSP231I C protein; tran 36.0 31 0.0011 19.5 2.8 23 45-72 13-39 (98)
472 4hku_A LMO2814 protein, TETR t 36.0 18 0.00063 22.2 1.8 20 38-59 20-39 (178)
473 3pg6_A E3 ubiquitin-protein li 35.9 20 0.00069 23.7 2.1 17 64-80 142-158 (159)
474 1s7o_A Hypothetical UPF0122 pr 35.9 26 0.00087 21.2 2.4 20 45-69 37-56 (113)
475 1t33_A Putative transcriptiona 35.8 20 0.00068 22.5 2.0 27 37-70 24-50 (224)
476 2pjp_A Selenocysteine-specific 35.8 39 0.0013 20.3 3.3 56 21-85 59-114 (121)
477 3fym_A Putative uncharacterize 35.8 22 0.00075 21.8 2.1 14 45-59 15-28 (130)
478 3mlf_A Transcriptional regulat 35.7 24 0.00082 20.9 2.3 23 45-72 35-57 (111)
479 1rp3_A RNA polymerase sigma fa 35.5 29 0.00099 22.2 2.8 23 45-72 202-224 (239)
480 2ras_A Transcriptional regulat 35.5 20 0.00067 22.4 2.0 21 37-59 23-43 (212)
481 2zcx_A SCO7815, TETR-family tr 35.4 32 0.0011 22.3 3.0 28 37-70 35-62 (231)
482 2np5_A Transcriptional regulat 35.4 23 0.0008 22.1 2.3 26 38-69 22-47 (203)
483 3q0w_A HTH-type transcriptiona 35.4 24 0.00082 22.7 2.4 28 37-70 56-83 (236)
484 3hta_A EBRA repressor; TETR fa 35.3 23 0.00079 22.5 2.3 26 38-69 41-66 (217)
485 2ijl_A AGR_C_4647P, molybdenum 35.2 50 0.0017 20.7 3.8 44 31-84 28-74 (135)
486 2lfw_A PHYR sigma-like domain; 35.2 29 0.00099 21.4 2.7 14 45-59 108-121 (157)
487 2iu5_A DHAS, YCEG, HTH-type dh 35.2 17 0.00059 22.5 1.6 21 37-59 25-45 (195)
488 3bqy_A Putative TETR family tr 35.1 23 0.00078 22.9 2.3 27 38-70 15-41 (209)
489 2fbq_A Probable transcriptiona 35.1 30 0.001 22.2 2.9 26 38-69 20-45 (235)
490 1or7_A Sigma-24, RNA polymeras 34.9 31 0.0011 21.5 2.8 20 45-69 155-174 (194)
491 2ozu_A Histone acetyltransfera 34.8 40 0.0014 24.3 3.6 30 45-82 213-242 (284)
492 2hye_C Cullin-4A, CUL-4A; beta 34.7 24 0.00084 28.1 2.7 34 45-83 606-641 (759)
493 3c07_A Putative TETR-family tr 34.7 34 0.0012 22.9 3.2 29 36-70 52-80 (273)
494 1vi0_A Transcriptional regulat 34.4 24 0.00083 22.2 2.3 26 38-69 21-46 (206)
495 2ou2_A Histone acetyltransfera 33.8 26 0.0009 25.2 2.5 52 19-83 190-241 (280)
496 3aqt_A Bacterial regulatory pr 33.8 22 0.00074 23.1 2.0 22 36-59 57-78 (245)
497 2id3_A Putative transcriptiona 33.7 26 0.00088 22.4 2.3 28 37-70 52-79 (225)
498 3nrg_A TETR family transcripti 33.6 19 0.00063 22.4 1.6 21 37-59 25-45 (217)
499 1rkt_A Protein YFIR; transcrip 33.5 29 0.00099 21.6 2.5 20 38-59 25-44 (205)
500 1zx4_A P1 PARB, plasmid partit 33.4 30 0.001 23.3 2.6 26 45-75 23-48 (192)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.67 E-value=1.3e-16 Score=117.07 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=70.6
Q ss_pred CchhHhhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCc
Q 045477 1 MANEARDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGI 80 (89)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi 80 (89)
|++. +++.+..+++++.||+.+++|++|++|||||+|++.+ +|+|++|||++++ + ++..++|+||+|++.|+
T Consensus 1 M~~~-e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g-~----~~~~l~rlLr~L~~~gl 72 (353)
T 4a6d_A 1 MGSS-EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVR-A----SAHGTELLLDICVSLKL 72 (353)
T ss_dssp CCTT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTS
T ss_pred CCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhC-c----CHHHHHHHHHHHHHCCC
Confidence 5554 4588888999999999999999999999999999865 8999999999999 9 99999999999999999
Q ss_pred eeeecc
Q 045477 81 VECSVD 86 (89)
Q Consensus 81 ~~e~~~ 86 (89)
|++..+
T Consensus 73 l~~~~~ 78 (353)
T 4a6d_A 73 LKVETR 78 (353)
T ss_dssp EEEEEE
T ss_pred EEEecc
Confidence 986543
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.66 E-value=2.7e-16 Score=115.74 Aligned_cols=81 Identities=48% Similarity=0.813 Sum_probs=71.9
Q ss_pred hhHhhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCC-CCCCCcchHHHHHHHHhccCce
Q 045477 3 NEARDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPAT-KNKDAPTMLDRILGLLASYGIV 81 (89)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~-~~~~d~~~l~RlLR~L~s~gi~ 81 (89)
.+++++++..+++++++|+.+++|++|++|||||+|+++| ++|+|++|||++++ + .+|.++..|+|+||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g-~~~~~~~~~~l~rlLr~L~~~g~l 91 (364)
T 3p9c_A 14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLP-SAANPEAPDMVDRILRLLASYNVV 91 (364)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTT-CTTCTTHHHHHHHHHHHHHHTTSE
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcC-CCCCccchhhHHHHHHHHHhCCCE
Confidence 4678899999999999999999999999999999999864 37999999999999 6 3444566999999999999999
Q ss_pred eeec
Q 045477 82 ECSV 85 (89)
Q Consensus 82 ~e~~ 85 (89)
+++.
T Consensus 92 ~~~~ 95 (364)
T 3p9c_A 92 TCLV 95 (364)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9873
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.66 E-value=2.4e-16 Score=116.01 Aligned_cols=80 Identities=46% Similarity=0.724 Sum_probs=71.1
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhc-CCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCcee
Q 045477 4 EARDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKA-GPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~-g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
+++++.+..+++++++|+.+++|++|++|||||+|++. |+++|+|++|||++++ ..+|.++..|+|+||+|++.|+|+
T Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~-~~~~~~~~~l~rlLr~L~~~gll~ 94 (368)
T 3reo_A 16 SSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLP-TTNPEAPVMLDRVLRLLASYSVVT 94 (368)
T ss_dssp -CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSS-CCCTTHHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcC-cCCCcchhhHHHHHHHHHhCCCeE
Confidence 36788899999999999999999999999999999986 5447899999999997 545556679999999999999999
Q ss_pred ee
Q 045477 83 CS 84 (89)
Q Consensus 83 e~ 84 (89)
++
T Consensus 95 ~~ 96 (368)
T 3reo_A 95 YT 96 (368)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 4
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.55 E-value=1e-14 Score=106.26 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=69.4
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 4 EARDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
++..+++..+++++++++.+++|+++++|||||+|++.+ +|+|++|||++++ + +|.++..|+|+||+|++.|+|.+
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g-~-~~~~~~~l~rlLr~L~~~gll~~ 80 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLK-L-HPSKVNILHRFLRLLTHNGFFAK 80 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTT-C-CTTTHHHHHHHHHHHHHTTSEEE
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcC-C-CCcchHHHHHHHHHHhhCCcEEE
Confidence 345677888999999999999999999999999999864 6999999999999 8 55568899999999999999998
Q ss_pred e
Q 045477 84 S 84 (89)
Q Consensus 84 ~ 84 (89)
.
T Consensus 81 ~ 81 (358)
T 1zg3_A 81 T 81 (358)
T ss_dssp E
T ss_pred e
Confidence 7
No 5
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.54 E-value=9.8e-15 Score=106.96 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=67.8
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 5 ARDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+..+++..+++++++|+.+++|+++++|||||+|++++ +|+|++|||++++ + ++..++|+||+|++.|+|++.
T Consensus 11 ~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g-~----~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 11 TAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTG-L----TRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEEE
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhC-c----CHHHHHHHHHHHhhCCCeEec
Confidence 35678888999999999999999999999999999754 7999999999999 9 999999999999999999875
No 6
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.53 E-value=2.1e-14 Score=104.43 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=69.5
Q ss_pred hHhhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 4 EARDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
++..++...+++++++++.+++|+++++|||||+|++.+ +|+|++|||++++ + +|.++..++|+||+|++.|+|++
T Consensus 11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~-~-~~~~~~~l~rlLr~L~~~gll~~ 86 (352)
T 1fp2_A 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQ-V-PSSKIGNVRRLMRYLAHNGFFEI 86 (352)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHT-C-CGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhC-c-CCCChHHHHHHHHHHHhCCeEEE
Confidence 456688889999999999999999999999999999864 6999999999999 8 45558899999999999999998
Q ss_pred e
Q 045477 84 S 84 (89)
Q Consensus 84 ~ 84 (89)
.
T Consensus 87 ~ 87 (352)
T 1fp2_A 87 I 87 (352)
T ss_dssp E
T ss_pred e
Confidence 7
No 7
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.51 E-value=4.9e-14 Score=101.24 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 8 ENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 8 ~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
++...+++++++++.+.+|+++++|||||+|++ +|+|++|||++++ + ++..++|+||+|++.|+|.+..
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~-~----~~~~l~r~Lr~L~~~g~l~~~~ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVG-S----DAERIHRLMRLLVAFEIFQGDT 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhC-c----CHHHHHHHHHHHHhCCceEecC
Confidence 566789999999999999999999999999975 6999999999999 9 9999999999999999999864
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.51 E-value=3.3e-14 Score=104.15 Aligned_cols=81 Identities=44% Similarity=0.634 Sum_probs=67.8
Q ss_pred hhHhhHHHHHHH--HHHHhHHHHHHHHHHHHhChHHHHHhcC-CCCCCCHHHHHhhCCCCC--CCCCcchHHHHHHHHhc
Q 045477 3 NEARDENFAYAF--EVTMGSVLHMTMKAVINLGLFEIIAKAG-PGAKLSASEIAAQLPATK--NKDAPTMLDRILGLLAS 77 (89)
Q Consensus 3 ~~~~~~~~~~~~--~l~~~~~~~~aL~~av~LgIfd~l~~~g-~~~~~t~~eLA~~~~~~~--~~~d~~~l~RlLR~L~s 77 (89)
.++..+++..+| +++++++.+++|++|++|||||+|++.| +++++|++|||++++ ++ +|.++..|+|+||+|++
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~-~~~~~~~~~~~l~rlLr~L~~ 94 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLP-ASTQHSDLPNRLDRMLRLLAS 94 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSC-GGGCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcC-CCCCCCcChHHHHHHHHHHhh
Confidence 345667777888 9999999999999999999999999743 112399999999999 72 56678999999999999
Q ss_pred cCceeee
Q 045477 78 YGIVECS 84 (89)
Q Consensus 78 ~gi~~e~ 84 (89)
.|+|++.
T Consensus 95 ~gll~~~ 101 (372)
T 1fp1_D 95 YSVLTST 101 (372)
T ss_dssp TTSEEEE
T ss_pred CCceEec
Confidence 9999987
No 9
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.51 E-value=3.6e-14 Score=103.26 Aligned_cols=76 Identities=25% Similarity=0.331 Sum_probs=68.2
Q ss_pred CchhHhhHHHHHHHHHHH-hHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccC
Q 045477 1 MANEARDENFAYAFEVTM-GSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYG 79 (89)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~-~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~g 79 (89)
|..++..+.+..++++++ +++.+++|+++++|||||+|++ +|.|++|||++++ + ++..++|+||+|++.|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g-~----~~~~l~rlLr~L~~~g 92 (359)
T 1x19_A 22 MSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTG-S----VPPRLEMLLETLRQMR 92 (359)
T ss_dssp ECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTT
T ss_pred CCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhC-c----ChHHHHHHHHHHHhCC
Confidence 334556778888999987 8999999999999999999975 6899999999999 9 9999999999999999
Q ss_pred ceeeec
Q 045477 80 IVECSV 85 (89)
Q Consensus 80 i~~e~~ 85 (89)
+|++..
T Consensus 93 ll~~~~ 98 (359)
T 1x19_A 93 VINLED 98 (359)
T ss_dssp SEEEET
T ss_pred CeEeeC
Confidence 999863
No 10
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.48 E-value=4.8e-14 Score=102.52 Aligned_cols=69 Identities=25% Similarity=0.326 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 6 RDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
..+....+++++++|+.+++|++|++|||||+|++ +|+|++|||++++ + ++..|+|+||+|++.|+|++
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g-~----~~~~l~rlLr~l~~~g~l~~ 87 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATG-T----DADALRRVLRLLAVRDVVRE 87 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhC-c----CHHHHHHHHHHHHhCCCEEe
Confidence 45677889999999999999999999999999974 6999999999999 9 99999999999999999998
No 11
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.45 E-value=9.2e-14 Score=101.97 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 6 RDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+.+....+++++++|+.+++|+++++|||||+|++ +|+|++|||++++ + ++..++|+||+|++.|+|.++.
T Consensus 35 ~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g-~----~~~~l~rlLr~L~~~g~l~~~~ 105 (369)
T 3gwz_A 35 RAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATG-A----HEQTLRRLLRLLATVGVFDDLG 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSSEECS
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHhCCCEEEeC
Confidence 44666779999999999999999999999999984 6999999999999 9 9999999999999999999853
No 12
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.44 E-value=1.3e-13 Score=99.17 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=60.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 12 YAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 12 ~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.+++++.+|+.+++|++|++|||||+|++ +|+|++|||++++ + ++..++|+||+|++.|+|.++.
T Consensus 8 ~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~-~----~~~~l~rlLr~l~~~gl~~~~~ 72 (332)
T 3i53_A 8 IGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAG-A----HADSLDRLLRHLVAVGLFTRDG 72 (332)
T ss_dssp SCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHhCCcEEecC
Confidence 36789999999999999999999999975 6999999999999 9 9999999999999999999863
No 13
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.39 E-value=5.7e-13 Score=95.22 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=60.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 11 AYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 11 ~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
..+++++++++.+++|+++++|||||+|++ +|+|++|||++++ + ++..++|+||+|++.|+|++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~-~----~~~~l~r~L~~L~~~g~l~~~ 72 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQ-T----SERGMRMLCDYLVIIGFMTKQ 72 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhC-C----CchHHHHHHHHHHhcCCeEec
Confidence 458899999999999999999999999985 6999999999999 9 999999999999999999864
No 14
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.37 E-value=7.4e-13 Score=96.19 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 6 RDENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.++....+++++++++.+.+|++++++||||+|++ +|+|++|||++++ + ++..++|+||+|++.|+|.+.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g-~----~~~~l~r~Lr~L~~~Gll~~~ 82 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTD-T----HPQALSRLVRHLTVVGVLEGG 82 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEECC
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhC-c----CHHHHHHHHHHHhhCCCEEEe
Confidence 34556679999999999999999999999999964 6999999999999 9 999999999999999999974
No 15
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.36 E-value=5.6e-13 Score=96.30 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=60.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 11 AYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 11 ~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
..+++++++|+.+++|+++++|||||+|+ +|+|++|||++++ + ++..++|+||+|++.|+|++..
T Consensus 26 ~~l~~~~~~~~~~~~l~~a~~lgif~~l~-----~~~t~~elA~~~~-~----~~~~l~rlLr~L~~~gll~~~~ 90 (352)
T 3mcz_A 26 VDLVKLSDQYRQSAILHYAVADKLFDLTQ-----TGRTPAEVAASFG-M----VEGKAAILLHALAALGLLTKEG 90 (352)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTHHHHTT-----SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHCChHHHhC-----CCCCHHHHHHHhC-c----ChHHHHHHHHHHHHCCCeEecC
Confidence 34899999999999999999999999994 3899999999999 9 9999999999999999999864
No 16
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.29 E-value=7e-12 Score=90.74 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 8 ENFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 8 ~~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.....+++++++|+.+.+|++++++|||++|.+ +|+|++|||++++ + ++..+.|+||+|++.|+|.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~-~----~~~~l~r~L~~L~~~g~~~~~ 85 (360)
T 1tw3_A 18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTD-T----RPEALLRLIRHLVAIGLLEED 85 (360)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhC-c----CHHHHHHHHHHHHHCCCEEec
Confidence 345567899999999999999999999999964 6999999999999 9 999999999999999999985
No 17
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.50 E-value=0.00012 Score=41.99 Aligned_cols=47 Identities=11% Similarity=0.248 Sum_probs=41.7
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
.+..|.++|.+.+ .|+|..|||+.++ + +...+.|++..|...|++..
T Consensus 11 ~~~~IL~~L~~~~--~~~s~~eLA~~lg-l----sr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 11 LEQKILQVLSDDG--GPVAIFQLVKKCQ-V----PKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHC--SCEEHHHHHHHHC-S----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcC--CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEec
Confidence 3567899998765 6899999999999 9 89999999999999999865
No 18
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=97.32 E-value=0.00022 Score=45.01 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=42.3
Q ss_pred HHhChHHHHHhcCCCCC-CCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 30 INLGLFEIIAKAGPGAK-LSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~-~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.+..|...|.+.+ +| +|+.|||+.++ . +...++|.++.|...|++....
T Consensus 27 ~e~~il~~L~~~~--~~~~t~~eLa~~l~-~----s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 27 ADLNVMKSFLNEP--DRWIDTDALSKSLK-L----DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHHST--TCCEEHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCC--CCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEeeC
Confidence 3566788888765 67 99999999999 9 9999999999999999998653
No 19
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.26 E-value=0.004 Score=38.81 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=41.6
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.++.|+..|.... +++|..+||+.++ . ++..+.|+++.|...|++....+
T Consensus 36 ~~~~iL~~l~~~~--~~~~~~~la~~l~-i----~~~~vs~~l~~Le~~glv~r~~~ 85 (147)
T 2hr3_A 36 SQLVVLGAIDRLG--GDVTPSELAAAER-M----RSSNLAALLRELERGGLIVRHAD 85 (147)
T ss_dssp HHHHHHHHHHHTT--SCBCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHhC-C----ChhhHHHHHHHHHHCCCEeeCCC
Confidence 4566777777622 6899999999999 9 99999999999999999987644
No 20
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=97.21 E-value=0.00024 Score=41.43 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=41.5
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhC-----CCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQL-----PATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~-----~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
...|.+.|.+.+ ++++|++||++.+ + + +...++|.|+.|+..|++.....
T Consensus 19 r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~-i----s~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 19 RLKILEVLQEPD-NHHVSAEDLYKRLIDMGEE-I----GLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCC-C----CHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCC-C----CHhhHHHHHHHHHHCCCeEEEee
Confidence 456888887642 1589999999999 6 7 88899999999999999987643
No 21
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=97.18 E-value=0.00029 Score=50.02 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=40.4
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+.|.+.+++.+ +++|++|||+.++ . +...++|+|+.|+..|++..+.
T Consensus 33 l~IL~~l~~~~--~~ltl~eia~~lg-l----~ksTv~RlL~tL~~~G~v~~~~ 79 (275)
T 3mq0_A 33 VRILDLVAGSP--RDLTAAELTRFLD-L----PKSSAHGLLAVMTELDLLARSA 79 (275)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHHHHT-C----C--CHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEECC
Confidence 46888998865 7899999999999 9 8889999999999999998764
No 22
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.17 E-value=0.00049 Score=40.57 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=45.0
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
-.+..|.+.|.+.++++++|+.|||+.++ + +...+.|.|..|...|++...+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg-v----s~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLG-T----PKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHC-C----CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEecC
Confidence 34678889998876556899999999999 9 8899999999999999997654
No 23
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.16 E-value=0.00096 Score=39.86 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=46.1
Q ss_pred HHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 27 KAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 27 ~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
..-++..|.+.|.+.++|.++|+.|||++++ + ....+.|.|..|...|++...+
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg-v----sr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLG-T----PKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEES
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEecC
Confidence 3345777899998876567899999999999 9 8899999999999999997654
No 24
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=97.12 E-value=0.0013 Score=41.39 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=37.8
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
|...|+.+.+++++|+.|||+.++ + .+..++|+|+.|...|++...
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~-i----~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNN-L----SEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTT-S----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCceEec
Confidence 444555542237899999999999 9 999999999999999998765
No 25
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=97.10 E-value=0.0009 Score=39.74 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=39.6
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.|.+.|.+. +.+|++|||+.++ + .+..++|.|..|...|++..+
T Consensus 6 ~Il~~L~~~---g~vsv~eLa~~l~-V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALR---GRMEAAQISQTLN-T----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHS---CSBCHHHHHHHTT-C----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc---CCCcHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEe
Confidence 467778775 6999999999999 9 999999999999999999876
No 26
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=97.05 E-value=0.00077 Score=39.31 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=39.3
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
..|.+.|.+. +++|..|||+.++ + .+..++|.|+.|...|++...
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lg-v----s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALA-V----TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHT-S----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEe
Confidence 4577788764 5899999999999 9 899999999999999999854
No 27
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=97.04 E-value=0.00062 Score=47.26 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=41.4
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+.|.+.|.+.+ +++|+.|||+.++ . +...++|+|+.|...|++....+
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~g-l----~~stv~r~l~~L~~~G~v~~~~~ 56 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVG-L----PRSTVQRIINALEEEFLVEALGP 56 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTT-S----CHHHHHHHHHHHHTTTSEEECGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEeCC
Confidence 45677887654 6899999999999 9 99999999999999999987643
No 28
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.03 E-value=0.0037 Score=37.23 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=42.4
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++.--..+.|+..| + +++|..|||+.++ + .+..++|.++.|...|++...
T Consensus 27 ~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~-i----s~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D----KGRSEEEIMQTLS-L----SKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHSCHHHHHHHHHH-H----TTCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHH-c----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 34444567788888 4 6899999999999 9 899999999999999999864
No 29
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=97.03 E-value=0.0037 Score=39.01 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=38.3
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
..+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 37 ~~~~~vL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~L~~~Glv~r~~~~ 87 (142)
T 3ech_A 37 PPDVHVLKLIDEQ---RGLNLQDLGRQMC-R----DKALITRKIRELEGRNLVRRERNP 87 (142)
T ss_dssp HHHHHHHHHHHHT---TTCCHHHHHHHHC--------CHHHHHHHHHHHTTSEEC----
T ss_pred HHHHHHHHHHHhC---CCcCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEeeccCC
Confidence 4556677778764 5899999999999 9 999999999999999999876543
No 30
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.00 E-value=0.0011 Score=39.15 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=44.5
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
++.--.++.|+..|... +++|..|||+.++ . ++..+.|.++.|...|++....
T Consensus 12 ~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~-i----s~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 12 ILGNPVRLGIMIFLLPR---RKAPFSQIQKVLD-L----TPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHSHHHHHHHHHHHHH---SEEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred ccCChHHHHHHHHHHhc---CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEe
Confidence 44455677888888754 5899999999999 9 9999999999999999998543
No 31
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.99 E-value=0.00096 Score=40.55 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=40.2
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.|.+.|.+. +.+|++|||+.++ + .+..++|.|..|...|++..+.
T Consensus 6 ~Il~~L~~~---g~vsv~eLA~~l~-V----S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQ---GRMEAKQLSARLQ-T----PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHS---CSEEHHHHHHHTT-C----CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHc---CCCcHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEe
Confidence 467778775 6999999999999 9 9999999999999999998773
No 32
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=96.98 E-value=0.0013 Score=41.81 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=44.3
Q ss_pred HHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCC-CCCCcchHHHHHHHHhccCceeeeccc
Q 045477 28 AVINLGLFEIIAKAGPGAKLSASEIAAQLPATK-NKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 28 ~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~-~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+-.+.-|.+.|.+.+ +++|++||.+.+. .. +.-+...++|.|+.|+..|++.+....
T Consensus 10 T~qR~~Il~~l~~~~--~~~sa~ei~~~l~-~~~~~is~~TVYR~L~~L~e~Glv~~~~~~ 67 (131)
T 2o03_A 10 TRQRAAISTLLETLD--DFRSAQELHDELR-RRGENIGLTTVYRTLQSMASSGLVDTLHTD 67 (131)
T ss_dssp HHHHHHHHHHHHHCC--SCEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHTTTSEEEEECT
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCCEEEEEeC
Confidence 445667889998754 7999999999983 11 111788999999999999999987543
No 33
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.93 E-value=0.0011 Score=46.04 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=40.7
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+.|.+.|.+.+ +++|+.|||+.++ . +...+.|+|+.|...|++...
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~g-l----~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFN-M----SVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEEC
Confidence 46778888754 6899999999999 9 899999999999999999876
No 34
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.92 E-value=0.0013 Score=38.93 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=41.3
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.+..|...|... +++|..|||+.++ . ++..+.|.++.|...|++.....
T Consensus 21 ~~~~il~~l~~~---~~~s~~ela~~l~-i----s~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 21 SDVRIYSLLLER---GGMRVSEIARELD-L----SARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEEee
Confidence 355667777664 5899999999999 9 99999999999999999987543
No 35
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.92 E-value=0.0061 Score=38.27 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=41.0
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+..|+..|... +++|..+||+.++ . ++..+.|+++.|...|++......
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~-~----s~~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERME-V----KPSAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEeecCCC
Confidence 34466677764 5899999999999 9 999999999999999999876543
No 36
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.91 E-value=0.001 Score=39.44 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=39.0
Q ss_pred ChHHHHHhc-----CCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 33 GLFEIIAKA-----GPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 33 gIfd~l~~~-----g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.|.+.|.+. | +|.|+.|||+.++ + .+..++|-|..|...|++..+
T Consensus 8 ~IL~~I~~~i~~~~g--~~psv~EIa~~lg-v----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 8 KIISIVQERQNMDDG--APVKTRDIADAAG-L----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHTT--SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhhccC--CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCcEEec
Confidence 366666665 5 7999999999999 9 788999999999999999876
No 37
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.91 E-value=0.0089 Score=37.06 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=39.9
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
++.|...|. . +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 39 ~~~iL~~l~-~---~~~~~~ela~~l~-~----s~~tvs~~l~~Le~~glv~r~~~~ 86 (146)
T 2gxg_A 39 DFLVLRATS-D---GPKTMAYLANRYF-V----TQSAITASVDKLEEMGLVVRVRDR 86 (146)
T ss_dssp HHHHHHHHT-T---SCBCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHh-c---CCcCHHHHHHHhC-C----CchhHHHHHHHHHHCCCEEeecCC
Confidence 444555665 2 7899999999999 9 999999999999999999876543
No 38
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=96.90 E-value=0.0012 Score=41.05 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=43.2
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccC
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDV 88 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~ 88 (89)
.+..|...|...+ ++++|..|||+.++ . ++..+.|+++.|...|++....+..
T Consensus 32 ~~~~vL~~l~~~~-~~~~t~~ela~~l~-~----~~~tvs~~l~~Le~~Gli~r~~~~~ 84 (139)
T 3eco_A 32 EQGHTLGYLYAHQ-QDGLTQNDIAKALQ-R----TGPTVSNLLRNLERKKLIYRYVDAQ 84 (139)
T ss_dssp HHHHHHHHHHHST-TTCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHhC-C----CcccHHHHHHHHHHCCCEeecCCCC
Confidence 3455666777653 25999999999999 9 9999999999999999999765443
No 39
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=96.89 E-value=0.0017 Score=40.21 Aligned_cols=51 Identities=4% Similarity=0.178 Sum_probs=41.6
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+..|...|...+ ++++|..|||+.++ . ++..+.|+++.|...|++......
T Consensus 36 ~~~iL~~l~~~~-~~~~~~~ela~~l~-~----~~~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 36 QMTIIDYLSRNK-NKEVLQRDLESEFS-I----KSSTATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp HHHHHHHHHHTT-TSCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHCC-CCCcCHHHHHHHHC-C----CcchHHHHHHHHHHCCCEEeeCCC
Confidence 444566677654 23899999999999 9 999999999999999999876543
No 40
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.89 E-value=0.0016 Score=40.25 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.++.|+..|... +++|..|||+.++ . ++..+.|+++.|...|++....+
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~-~----~~~tvs~~l~~L~~~glv~r~~~ 87 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTA-M----DAATIKGVVERLDKRGLIQRSAD 87 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTT-C----CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeeCC
Confidence 356677778765 5899999999999 9 99999999999999999987543
No 41
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=96.85 E-value=0.0019 Score=41.72 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=43.8
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCC-CCCcchHHHHHHHHhccCceeeeccc
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATKN-KDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~-~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
-.+.-|.+.|.+.+ +++|+.||.+.+. ... .-+...++|.|+.|+..|++.+....
T Consensus 22 ~qR~~Il~~L~~~~--~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~~~~~~ 78 (145)
T 2fe3_A 22 PQRHAILEYLVNSM--AHPTADDIYKALE-GKFPNMSVATVYNNLRVFRESGLVKELTYG 78 (145)
T ss_dssp HHHHHHHHHHHHCS--SCCCHHHHHHHHG-GGCTTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHHHHHhCC--CCCCHHHHHHHHH-HhCCCCChhhHHHHHHHHHHCCCEEEEeeC
Confidence 34566889998754 7999999999984 221 11788999999999999999987543
No 42
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=96.83 E-value=0.0012 Score=41.74 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=39.8
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
.+..|...|...+ +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 40 ~q~~vL~~l~~~~--~~~t~~eLa~~l~-i----~~~tvs~~l~~Le~~Glv~r~~~~ 90 (150)
T 3fm5_A 40 RSYSVLVLACEQA--EGVNQRGVAATMG-L----DPSQIVGLVDELEERGLVVRTLDP 90 (150)
T ss_dssp HHHHHHHHHHHST--TCCCSHHHHHHHT-C----CHHHHHHHHHHHHTTTSEEC----
T ss_pred HHHHHHHHHHhCC--CCcCHHHHHHHHC-C----CHhHHHHHHHHHHHCCCEEeeCCc
Confidence 3455556676654 6899999999999 9 999999999999999999876543
No 43
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.82 E-value=0.0021 Score=39.58 Aligned_cols=49 Identities=18% Similarity=0.422 Sum_probs=41.0
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.++.|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+
T Consensus 34 ~~~~iL~~l~~~---~~~~~~ela~~l~-~----~~~tvs~~l~~L~~~gli~r~~~ 82 (139)
T 3bja_A 34 VQFGVIQVLAKS---GKVSMSKLIENMG-C----VPSNMTTMIQRMKRDGYVMTEKN 82 (139)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHCS-S----CCTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHC-C----ChhHHHHHHHHHHHCCCeeeccC
Confidence 345566677664 5899999999999 9 88999999999999999987544
No 44
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.81 E-value=0.0021 Score=39.72 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=42.2
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
.++.|+..|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~-i----s~~~vs~~l~~L~~~gli~~~~~~ 81 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQ-I----DRAAVTRHLKLLEESGYIIRKRNP 81 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEecCCC
Confidence 345577777765 5899999999999 9 999999999999999999876543
No 45
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=96.80 E-value=0.0015 Score=40.53 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=38.3
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.+...|.-.. +|+|..|||+.++ . ++..+.|+++.|...|++....
T Consensus 30 ~il~~L~~~~--~~~t~~ela~~l~-~----~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 30 AVYAILYLSD--KPLTISDIMEELK-I----SKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHHCS--SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEe
Confidence 3455664222 6899999999999 9 9999999999999999998764
No 46
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=96.80 E-value=0.0014 Score=38.91 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=34.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+++|..|||+.++ + ++..+.|.++.|...|++.....
T Consensus 35 ~~~t~~ela~~l~-i----s~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 35 KPITSEELADIFK-L----SKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEeecc
Confidence 6899999999999 9 99999999999999999987643
No 47
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=96.80 E-value=0.011 Score=37.40 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=39.7
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
++.|...|...+ +++|..|||+.++ . ++..+.|+++.|...|++.....
T Consensus 49 ~~~iL~~L~~~~--~~~~~~ela~~l~-i----~~~tvs~~l~~Le~~Gli~r~~~ 97 (160)
T 3boq_A 49 KFDAMAQLARNP--DGLSMGKLSGALK-V----TNGNVSGLVNRLIKDGMVVKAMS 97 (160)
T ss_dssp HHHHHHHHHHCT--TCEEHHHHHHHCS-S----CCSCHHHHHHHHHHHTSEEEC--
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCEEeecC
Confidence 445666774333 6899999999999 9 89999999999999999987644
No 48
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.79 E-value=0.0028 Score=40.56 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=41.9
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccC
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDV 88 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~ 88 (89)
+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+.+
T Consensus 48 q~~iL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~ 97 (162)
T 3k0l_A 48 QFTALSVLAAK---PNLSNAKLAERSF-I----KPQSANKILQDLLANGWIEKAPDPT 97 (162)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHT-S----CGGGHHHHHHHHHHTTSEEEEECCS
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCcCeEecCCCC
Confidence 34466677764 5899999999999 9 9999999999999999999775543
No 49
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=96.78 E-value=0.0022 Score=40.13 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=42.5
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccC
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDV 88 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~ 88 (89)
.+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+..
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~ 82 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWS-L----PKQTVSGVCKTLAGQGLIEWQEGEQ 82 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEECCCSS
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEeeccCCC
Confidence 455667777765 4799999999999 9 9999999999999999999765443
No 50
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.77 E-value=0.016 Score=36.34 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=37.4
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
.|...| .. +++|..|||+.++ . ++..+.|+++.|...|++..
T Consensus 42 ~iL~~l-~~---~~~t~~eLa~~l~-~----~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 42 HVLNML-SI---EALTVGQITEKQG-V----NKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHH-HH---SCBCHHHHHHHHC-S----CSSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHH-Hc---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEe
Confidence 366777 43 6899999999999 9 89999999999999999986
No 51
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=96.77 E-value=0.0072 Score=38.55 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=40.3
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 55 q~~vL~~l~~~---~~~t~~eLa~~l~-~----~~~~vs~~l~~Le~~Glv~r~~~~ 103 (161)
T 3e6m_A 55 KLRLLSSLSAY---GELTVGQLATLGV-M----EQSTTSRTVDQLVDEGLAARSISD 103 (161)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEECC--
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeeCCc
Confidence 34466677765 5899999999999 9 999999999999999999876543
No 52
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=96.77 E-value=0.0099 Score=36.98 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=40.0
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+..|...|... ++ |..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 39 ~~~iL~~l~~~---~~-~~~~la~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~ 86 (144)
T 3f3x_A 39 DFSILKATSEE---PR-SMVYLANRYF-V----TQSAITAAVDKLEAKGLVRRIRDS 86 (144)
T ss_dssp HHHHHHHHHHS---CE-EHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHC---CC-CHHHHHHHHC-C----ChhHHHHHHHHHHHCCCEEeccCC
Confidence 44566677765 35 9999999999 9 999999999999999999876543
No 53
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.76 E-value=0.00027 Score=49.70 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=40.5
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+.|.+.|++.+ +++|++|||+.+| . +...++|+|+.|+..|++.....
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lg-l----~ksT~~RlL~tL~~~G~v~~~~~ 56 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSG-M----NKATVYRLMSELQEAGFVEQVEG 56 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHC-S----CHHHHHHHHHHHHHTTSEEECSS
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEcCC
Confidence 34666666543 7899999999999 9 89999999999999999987654
No 54
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.76 E-value=0.0022 Score=38.84 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=39.8
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
..+.|...|.+ +|+|..|||+.++ . ++..+.|.++.|...|++...
T Consensus 22 ~r~~IL~~L~~----~~~~~~ela~~l~-i----s~~tv~~~l~~L~~~gli~~~ 67 (114)
T 2oqg_A 22 TRWEILTELGR----ADQSASSLATRLP-V----SRQAIAKHLNALQACGLVESV 67 (114)
T ss_dssp HHHHHHHHHHH----SCBCHHHHHHHSS-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeeEE
Confidence 45677787833 5899999999999 9 999999999999999999754
No 55
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.76 E-value=0.0017 Score=40.66 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=39.9
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
.+..|+..|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~ 90 (148)
T 3nrv_A 41 TEWRIISVLSSA---SDCSVQKISDILG-L----DKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp HHHHHHHHHHHS---SSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEC----
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeecCC
Confidence 345566677764 5999999999999 9 999999999999999999876443
No 56
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.74 E-value=0.0024 Score=38.81 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=41.2
Q ss_pred HHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 28 AVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 28 ~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
--.++.|+..|.+ +++|+.|||+.++ . .+..+.|.++.|...|++...
T Consensus 25 ~~~r~~IL~~L~~----~~~~~~ela~~l~-i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLSV----SEASVGHISHQLN-L----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHHH----CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHh----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 3456678888874 6899999999999 9 899999999999999999754
No 57
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.72 E-value=0.0018 Score=40.19 Aligned_cols=51 Identities=12% Similarity=0.194 Sum_probs=43.7
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+|.--..+.|...|.+ +|+|+.|||+.++ + .+..+.+.|+.|...|++...
T Consensus 14 al~~~~R~~Il~~L~~----~~~~~~eLa~~l~-i----s~~tvs~hL~~L~~~GlV~~~ 64 (118)
T 3f6o_A 14 ALADPTRRAVLGRLSR----GPATVSELAKPFD-M----ALPSFMKHIHFLEDSGWIRTH 64 (118)
T ss_dssp HHTSHHHHHHHHHHHT----CCEEHHHHHTTCC-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHh----CCCCHHHHHHHhC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 4444567788888874 6899999999999 9 899999999999999999754
No 58
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=96.72 E-value=0.0019 Score=40.66 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.1
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
..|...|...+ ++++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 44 ~~vL~~l~~~~-~~~~t~~eLa~~l~-~----~~~~vs~~l~~L~~~Glv~r~~~~ 93 (148)
T 3jw4_A 44 GRMIGYIYENQ-ESGIIQKDLAQFFG-R----RGASITSMLQGLEKKGYIERRIPE 93 (148)
T ss_dssp HHHHHHHHHHT-TTCCCHHHHHHC-----------CHHHHHHHHHHTTSBCCC---
T ss_pred HHHHHHHHhCC-CCCCCHHHHHHHHC-C----ChhHHHHHHHHHHHCCCEEeeCCC
Confidence 44556666653 26899999999999 9 899999999999999999876543
No 59
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.72 E-value=0.0026 Score=39.45 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=40.3
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+..|...|...+ +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 39 ~~~iL~~l~~~~--~~~t~~~la~~l~-~----s~~~vs~~l~~L~~~glv~r~~~~ 88 (146)
T 2fbh_A 39 RWLVLLHLARHR--DSPTQRELAQSVG-V----EGPTLARLLDGLESQGLVRRLAVA 88 (146)
T ss_dssp HHHHHHHHHHCS--SCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEECCB
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHhC-C----ChhhHHHHHHHHHHCCCeeecCCC
Confidence 344566662222 7899999999999 9 999999999999999999876543
No 60
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.71 E-value=0.0019 Score=39.80 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=40.7
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
++.|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+
T Consensus 31 ~~~iL~~l~~~---~~~~~~ela~~l~-~----s~~tvs~~l~~L~~~glv~~~~~ 78 (138)
T 3bpv_A 31 QVACLLRIHRE---PGIKQDELATFFH-V----DKGTIARTLRRLEESGFIEREQD 78 (138)
T ss_dssp HHHHHHHHHHS---TTCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeecC
Confidence 44566677764 6899999999999 9 99999999999999999987543
No 61
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.70 E-value=0.0014 Score=38.65 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=42.2
Q ss_pred HHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 28 AVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 28 ~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
--..+.|...|.+ + +++|..|||+.++ . ++..+.|.++.|...|++....
T Consensus 23 ~~~~~~il~~l~~-~--~~~s~~ela~~l~-i----s~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 23 HPKRLLILCMLSG-S--PGTSAGELTRITG-L----SASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp SHHHHHHHHHHTT-C--CSEEHHHHHHHHC-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred ChHHHHHHHHHHh-C--CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEe
Confidence 3456678888865 2 6899999999999 9 8999999999999999998653
No 62
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.69 E-value=0.0033 Score=39.82 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=42.5
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
.++.|+..|... +++|..|||+.++ . ++..+.|+++.|...|++......
T Consensus 45 ~~~~iL~~l~~~---~~~t~~ela~~l~-i----s~~tvs~~l~~Le~~Gli~r~~~~ 94 (154)
T 2eth_A 45 TELYAFLYVALF---GPKKMKEIAEFLS-T----TKSNVTNVVDSLEKRGLVVREMDP 94 (154)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHTT-S----CHHHHHHHHHHHHHTTSEEEEECT
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeeCCC
Confidence 456677778765 5899999999999 9 999999999999999999876543
No 63
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=96.69 E-value=0.0016 Score=40.69 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
.+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 38 ~~~~iL~~l~~~---~~~t~~eLa~~l~-~----~~~~vs~~l~~L~~~Glv~r~~~~ 87 (143)
T 3oop_A 38 EQWSVLEGIEAN---EPISQKEIALWTK-K----DTPTVNRIVDVLLRKELIVREIST 87 (143)
T ss_dssp HHHHHHHHHHHH---SSEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEC--
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHC-C----CHhhHHHHHHHHHHCCCeeccCCC
Confidence 445566677765 5899999999999 9 999999999999999999876543
No 64
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.67 E-value=0.0033 Score=37.75 Aligned_cols=50 Identities=26% Similarity=0.399 Sum_probs=41.5
Q ss_pred HHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 26 MKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 26 L~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
|.--..+.|...|.+ +|+|+.|||+.++ . .+..+.+-|+.|...|++...
T Consensus 20 l~~~~r~~Il~~L~~----~~~~~~ela~~l~-i----s~~tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE----GEFSVGELEQQIG-I----GQPTLSQQLGVLRESGIVETR 69 (102)
T ss_dssp HCSHHHHHHHHHHHT----CCBCHHHHHHHHT-C----CTTHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHHh----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 333455677778864 6899999999999 9 888999999999999999754
No 65
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.67 E-value=0.0025 Score=38.82 Aligned_cols=48 Identities=25% Similarity=0.370 Sum_probs=40.3
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
..+.|...+...| .++|..|||+.+| + +...+++.|+.|...|++...
T Consensus 19 ~~l~Il~~l~~~g--~~~s~~eLa~~lg-v----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 19 DVIDVLRILLDKG--TEMTDEEIANQLN-I----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTHHHHHHHHHHC--SCBCHHHHHHTTT-S----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 3456777775544 5899999999999 9 899999999999999999765
No 66
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.65 E-value=0.0032 Score=38.86 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=41.0
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
++.|...|... +++|..+||+.++ . ++..+.|+++.|...|++....+.
T Consensus 36 ~~~iL~~l~~~---~~~~~~~la~~l~-~----~~~tvs~~l~~L~~~gli~r~~~~ 84 (138)
T 1jgs_A 36 QFKVLCSIRCA---ACITPVELKKVLS-V----DLGALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECT
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHC-C----ChHHHHHHHHHHHHCCCEEecCCc
Confidence 44566667664 5899999999999 9 999999999999999999876543
No 67
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=96.65 E-value=0.0034 Score=38.11 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=43.3
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
++.|...|.++|+ .+++..||+.+++ . +...+.|+|+.|...|++....+.
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~-l----~~~tvt~iLk~LE~kglIkr~~~~ 72 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSN-L----PLTEINKILKNLESKKLIKAVKSV 72 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEecCC
Confidence 4567788887652 5899999999999 9 999999999999999999966554
No 68
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.64 E-value=0.0026 Score=39.78 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=43.9
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+|.--.++.|+..|... +++|..|||+.++ . .+..+.|.|+.|...|++...
T Consensus 38 al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~-i----s~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 38 AIADENRAKITYALCQD---EELCVCDIANILG-V----TIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHSHHHHHHHHHHHHS---SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HhCCHHHHHHHHHHHHC---CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 34444577889999853 6899999999999 9 899999999999999999754
No 69
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=96.63 E-value=0.0041 Score=40.46 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=44.5
Q ss_pred HHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCC-CCCCcchHHHHHHHHhccCceeeeccc
Q 045477 28 AVINLGLFEIIAKAGPGAKLSASEIAAQLPATK-NKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 28 ~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~-~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+-...-|.+.|.+.+ +++|+.||.+.+. .. +.-+...++|.|..|+..|++.+....
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~~~~~~ 83 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIR-QKDKNTSISSVYRILNFLEKENFISVLETS 83 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHH-HHSTTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCcEEEEEeC
Confidence 456667899998765 7999999999983 11 111788999999999999999977543
No 70
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.62 E-value=0.0026 Score=39.55 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.++.|...|... +++|..+||+.++ . ++..+.|+++.|...|++....+
T Consensus 34 ~~~~iL~~l~~~---~~~~~~~la~~l~-~----s~~tvs~~l~~L~~~glv~r~~~ 82 (145)
T 2a61_A 34 AQFDILQKIYFE---GPKRPGELSVLLG-V----AKSTVTGLVKRLEADGYLTRTPD 82 (145)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-C----CchhHHHHHHHHHHCCCeeecCC
Confidence 355566677764 5899999999999 9 99999999999999999987643
No 71
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=96.62 E-value=0.0022 Score=41.26 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=39.6
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
.+..|...|...| ++++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 47 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~ 98 (168)
T 3u2r_A 47 QQYNTLRLLRSVH-PEGMATLQIADRLI-S----RAPDITRLIDRLDDRGLVLRTRKP 98 (168)
T ss_dssp HHHHHHHHHHHHT-TSCEEHHHHHHHC--------CTHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCEeecCCC
Confidence 3455566677653 26999999999999 9 899999999999999999976544
No 72
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.61 E-value=0.0033 Score=39.31 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=40.7
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+..|+..|... +++|..|||+.++ . ++..+.|+++.|...|++.....
T Consensus 44 ~~~iL~~l~~~---~~~t~~ela~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~ 91 (150)
T 2rdp_A 44 QFVALQWLLEE---GDLTVGELSNKMY-L----ACSTTTDLVDRMERNGLVARVRD 91 (150)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC-C----CchhHHHHHHHHHHCCCeeecCC
Confidence 44566677764 5899999999999 9 99999999999999999987644
No 73
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=96.60 E-value=0.0023 Score=41.37 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+++|++|||+.++ + ++..|.++|+.|...|++...
T Consensus 27 ~~~s~~~IA~~~~-i----~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 27 GCISLKSIAEENN-L----SDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp CCEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCEEEec
Confidence 6899999999999 9 999999999999999998754
No 74
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.59 E-value=0.004 Score=38.30 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=37.8
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhC-CCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQL-PATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~-~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
|...|.+ ++++..||++.+ + + ++..+.|.++.|...|++......
T Consensus 27 IL~~L~~----~~~~~~eLa~~l~~-i----s~~tvs~~L~~Le~~GlI~r~~~~ 72 (112)
T 1z7u_A 27 LMDELFQ----GTKRNGELMRALDG-I----TQRVLTDRLREMEKDGLVHRESFN 72 (112)
T ss_dssp HHHHHHH----SCBCHHHHHHHSTT-C----CHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred HHHHHHh----CCCCHHHHHHHhcc-C----CHHHHHHHHHHHHHCCCEEEeecC
Confidence 4445554 589999999999 9 9 999999999999999999876543
No 75
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=96.58 E-value=0.0032 Score=39.12 Aligned_cols=50 Identities=6% Similarity=0.185 Sum_probs=41.4
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
.+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 38 ~~~~iL~~l~~~---~~~~~~ela~~l~-~----~~~tvs~~l~~L~~~gli~r~~~~ 87 (142)
T 2bv6_A 38 PQFLVLTILWDE---SPVNVKKVVTELA-L----DTGTVSPLLKRMEQVDLIKRERSE 87 (142)
T ss_dssp HHHHHHHHHHHS---SEEEHHHHHHHTT-C----CTTTHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCEEeecCC
Confidence 345566677664 5899999999999 9 888999999999999999876543
No 76
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.57 E-value=0.0014 Score=39.13 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=41.9
Q ss_pred HHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 26 MKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 26 L~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+.--..+.|...|.+ +++|+.|||+.++ . .+..+.|-|+.|...|++...
T Consensus 20 l~~~~r~~Il~~L~~----~~~~~~ela~~l~-i----s~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 20 MANERRLQILCMLHN----QELSVGELCAKLQ-L----SQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp HCSHHHHHHHHHTTT----SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHhc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 333456677777865 5899999999999 9 899999999999999999755
No 77
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.56 E-value=0.0023 Score=40.44 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=39.1
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+..|+..|... +++|..|||+.++ . ++..+.|+++.|...|++.....
T Consensus 45 ~~~iL~~l~~~---~~~t~~ela~~l~-i----~~~tvs~~l~~Le~~Glv~r~~~ 92 (155)
T 3cdh_A 45 EWRVLACLVDN---DAMMITRLAKLSL-M----EQSRMTRIVDQMDARGLVTRVAD 92 (155)
T ss_dssp HHHHHHHHSSC---SCBCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeccC
Confidence 34455556543 6899999999999 9 99999999999999999986543
No 78
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.55 E-value=0.0026 Score=39.28 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=41.4
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.+..|+..|... +++|..|||+.++ . ++..+.|+++.|...|++....+
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~-~----s~~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQAC-I----LRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-C----CHhHHHHHHHHHHHCCCEEeecC
Confidence 355566777765 5899999999999 9 99999999999999999987643
No 79
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=96.55 E-value=0.0021 Score=41.66 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=40.8
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
.+..|...|...+ +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 54 ~q~~vL~~L~~~~--~~~t~~eLa~~l~-i----~~~tvs~~l~~Le~~GlV~r~~~~ 104 (166)
T 3deu_A 54 THWVTLHNIHQLP--PDQSQIQLAKAIG-I----EQPSLVRTLDQLEDKGLISRQTCA 104 (166)
T ss_dssp HHHHHHHHHHHSC--SSEEHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEC---
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHC-C----CHhhHHHHHHHHHHCCCEEeeCCC
Confidence 3455666676644 6899999999999 9 999999999999999999976543
No 80
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.54 E-value=0.003 Score=39.30 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=41.1
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+..|+..|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 31 ~~~iL~~l~~~---~~~t~~~la~~l~-~----s~~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 31 QYLYLVRVCEN---PGIIQEKIAELIK-V----DRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHC---cCcCHHHHHHHHC-C----CHhHHHHHHHHHHHCCCEEeecCC
Confidence 34466667764 5899999999999 9 999999999999999999876543
No 81
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.54 E-value=0.0028 Score=39.10 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccC
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDV 88 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~ 88 (89)
-+.-|..+|.++|+ .+++..||..+++ . +...+.|+|+.|.+.|++..+.+..
T Consensus 38 ~E~lVy~~I~~aGn-~GIw~kdL~~~tn-L----~~~~vtkiLK~LE~k~lIK~Vksv~ 90 (95)
T 2yu3_A 38 QEKLVYQIIEDAGN-KGIWSRDVRYKSN-L----PLTEINKILKNLESKKLIKAVKSVS 90 (95)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEEECCSC
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHhC-C----CHHHHHHHHHHHHhCCCEEEecCcc
Confidence 46678899998874 8899999999999 9 9999999999999999999987764
No 82
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=96.52 E-value=0.003 Score=39.59 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=41.0
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 42 ~~~iL~~l~~~---~~~t~~ela~~l~-~----~~~~vs~~l~~Le~~Glv~r~~~~ 90 (152)
T 3bj6_A 42 QRAILEGLSLT---PGATAPQLGAALQ-M----KRQYISRILQEVQRAGLIERRTNP 90 (152)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCeeecCCc
Confidence 44566667664 5899999999999 9 999999999999999999876543
No 83
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=96.51 E-value=0.0038 Score=41.32 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=39.9
Q ss_pred HHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 23 HMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 23 ~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
--||++.+.|. ...+++|+|++|||+.++ + ++..|+++|+.|...|++...
T Consensus 27 ~yAlr~L~~LA------~~~~~~~~s~~eIA~~~~-i----~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 27 RYGLTITLELA------KRIGDGPISLRSIAQDKN-L----SEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHH------HTTTSCCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH------hcCCCCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCeEEEe
Confidence 34555555543 222237899999999999 9 999999999999999999855
No 84
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=96.50 E-value=0.0034 Score=39.85 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=39.1
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
++.|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+
T Consensus 51 ~~~iL~~l~~~---~~~t~~ela~~l~-i----s~~tvs~~l~~Le~~glv~r~~~ 98 (162)
T 2fa5_A 51 EWRVITILALY---PGSSASEVSDRTA-M----DKVAVSRAVARLLERGFIRRETH 98 (162)
T ss_dssp HHHHHHHHHHS---TTCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEeeecC
Confidence 44566677663 6899999999999 9 99999999999999999986543
No 85
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.49 E-value=0.0041 Score=39.12 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=41.8
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhC--CCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQL--PATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~--~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+..|...|.+. +++|+.+||+.+ + . .+..+.+-++.|...|+++..
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~g-i----S~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIR-I----SKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCC-S----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcC-C----CHHHHHHHHHHHHHCCCEEec
Confidence 456788899875 599999999999 9 9 888999999999999999865
No 86
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.48 E-value=0.0031 Score=40.74 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=42.0
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
.+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 46 ~~~~iL~~L~~~---~~~t~~eLa~~l~-i----s~~tvs~~l~~Le~~GlV~r~~~~ 95 (168)
T 2nyx_A 46 PQFRTLVILSNH---GPINLATLATLLG-V----QPSATGRMVDRLVGAELIDRLPHP 95 (168)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEeccCC
Confidence 345566777764 5899999999999 9 999999999999999999876543
No 87
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=96.47 E-value=0.018 Score=37.98 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccC
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDV 88 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~ 88 (89)
..+..|...|...+ ++++|..+||+.++ . ++..+.|+++.|...|++....+.+
T Consensus 41 ~~q~~vL~~L~~~~-~~~~t~~eLa~~l~-i----s~~tvs~~l~~Le~~GlV~r~~~~~ 94 (189)
T 3nqo_A 41 SRQYMTILSILHLP-EEETTLNNIARKMG-T----SKQNINRLVANLEKNGYVDVIPSPH 94 (189)
T ss_dssp HHHHHHHHHHHHSC-GGGCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHHHHHHhcc-CCCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeccCCC
Confidence 34556667777532 27999999999999 9 9999999999999999999765544
No 88
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.47 E-value=0.0045 Score=37.76 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=34.1
Q ss_pred CCCCHHHHHhhC-CCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 45 AKLSASEIAAQL-PATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 45 ~~~t~~eLA~~~-~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
++++..||++.+ + + ++..+.+.|+.|...|+++....
T Consensus 26 ~~~~~~eLa~~l~~-i----s~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 26 GKKRTSELKRLMPN-I----TQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp CCBCHHHHHHHCTT-S----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHhcC-C----CHHHHHHHHHHHHHCCCEEEeec
Confidence 689999999999 8 9 99999999999999999987654
No 89
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.41 E-value=0.0034 Score=39.52 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=39.0
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++..
T Consensus 43 ~~~iL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYST---PGISVADLTKRLI-I----TGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEe
Confidence 44566667664 5899999999999 9 99999999999999999987
No 90
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.40 E-value=0.001 Score=46.63 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=38.6
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.|.+.|.+.+ +++|++|||+.++ . +...++|+|+.|...|++....
T Consensus 27 ~iL~~l~~~~--~~~~~~eia~~~g-l----~kstv~r~l~tL~~~G~v~~~~ 72 (260)
T 2o0y_A 27 DLLELFDAAH--PTRSLKELVEGTK-L----PKTTVVRLVATMCARSVLTSRA 72 (260)
T ss_dssp HHHTTCBTTB--SSBCHHHHHHHHC-C----CHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHhhCC--CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEECC
Confidence 4555565433 6899999999999 9 9999999999999999998754
No 91
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.38 E-value=0.0013 Score=45.87 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=39.0
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+.|.+.|.+.+ +++|+.|||+.++ . +...++|+|+.|+..|++...
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~g-l----~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAG-L----SRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEeC
Confidence 34566665543 7899999999999 9 899999999999999999865
No 92
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=96.38 E-value=0.0037 Score=39.76 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=41.4
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.++.|+..|... +++|..|||+.++ . ++..+.|+++.|...|++....+
T Consensus 53 ~~~~iL~~l~~~---~~~t~~ela~~l~-i----s~~tvs~~l~~Le~~Gli~r~~~ 101 (162)
T 3cjn_A 53 AKMRALAILSAK---DGLPIGTLGIFAV-V----EQSTLSRALDGLQADGLVRREVD 101 (162)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHC-C----ChhHHHHHHHHHHHCCCEEecCC
Confidence 345566777764 5899999999999 9 99999999999999999987643
No 93
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=96.36 E-value=0.0068 Score=38.90 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=40.3
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccCC
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDVD 89 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~~ 89 (89)
+.-.|...+ ++.+..|||+.++ + ++..+.|++.-|...|++....+..|
T Consensus 36 vL~~L~~~~--~~~~~~eLa~~l~-~----~~~tvs~~v~~Le~~GlV~R~~~~~D 84 (151)
T 4aik_A 36 TLYNINRLP--PEQSQIQLAKAIG-I----EQPSLVRTLDQLEEKGLITRHTSAND 84 (151)
T ss_dssp HHHHHHHSC--TTSCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred HHHHHHHcC--CCCcHHHHHHHHC-c----CHHHHHHHHHHHHhCCCeEeecCCCC
Confidence 444566554 5788899999999 9 99999999999999999997765544
No 94
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=96.36 E-value=0.0036 Score=39.46 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=40.5
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+
T Consensus 49 ~~~iL~~l~~~---~~~t~~ela~~l~-~----s~~tvs~~l~~Le~~glv~r~~~ 96 (153)
T 2pex_A 49 QYLVMLVLWET---DERSVSEIGERLY-L----DSATLTPLLKRLQAAGLVTRTRA 96 (153)
T ss_dssp HHHHHHHHHHS---CSEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHhC-C----CcccHHHHHHHHHHCCCEeecCC
Confidence 45566677764 5899999999999 9 99999999999999999987644
No 95
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=96.35 E-value=0.0033 Score=39.21 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=41.4
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.++.|+..|... +++|..+||+.++ . ++..+.|+++.|...|++.....
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~-~----~~~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLY-L----DSGTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTT-C----CHHHHHHHHHHHHHHTSEECCBC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHC-C----CcCcHHHHHHHHHHCCCEEeccC
Confidence 355566677764 5899999999999 9 99999999999999999987644
No 96
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=96.35 E-value=0.0032 Score=39.25 Aligned_cols=52 Identities=8% Similarity=0.144 Sum_probs=41.4
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccC
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDV 88 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~ 88 (89)
+..|...|...+ ++++|..|||+.++ . ++..+.|+++.|...|++....+..
T Consensus 39 q~~vL~~l~~~~-~~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~ 90 (127)
T 2frh_A 39 EFAVLTYISENK-EKEYYLKDIINHLN-Y----KQPQVVKAVKILSQEDYFDKKRNEH 90 (127)
T ss_dssp HHHHHHHHHHTC-CSEEEHHHHHHHSS-S----HHHHHHHHHHHHHHTTSSCCBCCSS
T ss_pred HHHHHHHHHhcc-CCCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEecCCCC
Confidence 344555666642 26899999999999 9 9999999999999999998754443
No 97
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.33 E-value=0.0035 Score=39.94 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=39.9
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~ 100 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLK-I----DKGTTARAIQKLVDEGYVFRQRDE 100 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEecCC
Confidence 3345556654 6899999999999 9 999999999999999999876544
No 98
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.30 E-value=0.0038 Score=38.85 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=38.2
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.+..|...|... + +|..|||+.++ . ++..+.|+++.|...|++....+
T Consensus 39 ~~~~iL~~l~~~---~-~t~~eLa~~l~-~----s~~tvs~~l~~L~~~Glv~r~~~ 86 (146)
T 3tgn_A 39 TQEHILMLLSEE---S-LTNSELARRLN-V----SQAAVTKAIKSLVKEGMLETSKD 86 (146)
T ss_dssp HHHHHHHHHTTC---C-CCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHhC---C-CCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCeEeccC
Confidence 445566666542 4 99999999999 9 99999999999999999987654
No 99
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=96.29 E-value=0.0029 Score=39.93 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=38.9
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 43 q~~iL~~l~~~---~~~~~~eLa~~l~-~----~~~~vs~~l~~L~~~Glv~r~~~~ 91 (149)
T 4hbl_A 43 QYLVMLTLWEE---NPQTLNSIGRHLD-L----SSNTLTPMLKRLEQSGWVKRERQQ 91 (149)
T ss_dssp HHHHHHHHHHS---SSEEHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEC----
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEeeCCCC
Confidence 44555666654 6899999999999 9 999999999999999999876543
No 100
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=96.26 E-value=0.0031 Score=41.23 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=40.7
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
++.|...|...++.+++|..|||+.++ . ++..+.|+++.|...|++.....
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~-i----s~~tvs~~l~~Le~~GlV~r~~~ 121 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAA-I----SGPSTSNRIVRLLEKGLIERRED 121 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCS-C----CSGGGSSHHHHHHHHTSEECCC-
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCcCEEecCC
Confidence 455677777765112399999999999 9 89999999999999999987643
No 101
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=96.24 E-value=0.0051 Score=39.50 Aligned_cols=56 Identities=21% Similarity=0.122 Sum_probs=43.8
Q ss_pred HHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCC-CCcchHHHHHHHHhccCceeeecc
Q 045477 28 AVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNK-DAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 28 ~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~-~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+..+.-|++.|.+.+ +++|++||.+.+. ...| -+...++|.|..|+..|++.+...
T Consensus 13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 13 TRQRAAVSAALQEVE--EFRSAQELHDMLK-HKGDAVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHHHHHHTTCS--SCEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 345667889998764 7999999999884 2211 277889999999999999998754
No 102
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=96.21 E-value=0.0065 Score=38.81 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=40.9
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+..|...|.+. +++|..|||+.++ . .+..+.|.++.|...|++...
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAG-L----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 456788888764 6899999999999 9 899999999999999999654
No 103
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=96.18 E-value=0.0012 Score=46.41 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=38.8
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+.|.+.|.+.+ +++|++|||+.++ . ....++|+|+.|+..|++...
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~g-l----~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATD-L----TRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEES
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEec
Confidence 34566665443 7899999999999 9 899999999999999999864
No 104
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.15 E-value=0.002 Score=39.49 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=39.5
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.++.|...|.+ +++|..|||+.++ . .+..+.|.++.|...|++...
T Consensus 26 ~r~~IL~~L~~----~~~s~~eLa~~lg-i----s~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ----GERAVEAIATATG-M----NLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT----CCEEHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 45567777753 6899999999999 9 999999999999999999754
No 105
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.13 E-value=0.0038 Score=38.77 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=40.9
Q ss_pred HHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 28 AVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 28 ~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
--.++.|...|.+ ++.|..|||+.++ . .+..+.|.|+.|...|++...
T Consensus 20 ~~~r~~IL~~L~~----~~~~~~eLa~~lg-i----s~stvs~~L~~L~~~GlV~~~ 67 (118)
T 2jsc_A 20 DPTRCRILVALLD----GVCYPGQLAAHLG-L----TRSNVSNHLSCLRGCGLVVAT 67 (118)
T ss_dssp SHHHHHHHHHHHT----TCCSTTTHHHHHS-S----CHHHHHHHHHHHTTTTSEEEE
T ss_pred CHHHHHHHHHHHc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCceEEE
Confidence 3455677888874 5799999999999 9 899999999999999999754
No 106
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=96.12 E-value=0.0033 Score=40.12 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=35.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccCC
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDVD 89 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~~ 89 (89)
+++|.+|||+.++ . ++..+.|+++-|...|++....+.+|
T Consensus 50 ~~~t~~eLa~~l~-~----~~~tvs~~v~~Le~~Glv~r~~~~~D 89 (147)
T 4b8x_A 50 GELPMSKIGERLM-V----HPTSVTNTVDRLVRSGLVAKRPNPND 89 (147)
T ss_dssp GEEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECC--
T ss_pred CCcCHHHHHHHHC-C----CHHHHHHHHHHHHhCCCEEEeecCCc
Confidence 6899999999999 9 99999999999999999997765543
No 107
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=96.10 E-value=0.0022 Score=40.09 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=34.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 49 ~~~t~~eLa~~l~-~----~~~tvs~~l~~L~~~Glv~r~~~~ 86 (140)
T 3hsr_A 49 EKLNIKKLGERVF-L----DSGTLTPLLKKLEKKDYVVRTREE 86 (140)
T ss_dssp CEEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCcCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCeEecCCC
Confidence 6999999999999 9 999999999999999999976544
No 108
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.05 E-value=0.0067 Score=38.05 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=40.4
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.++.|+..|.+ ++++..|||+.++ . .+..+.|.++.|...|++...
T Consensus 47 ~rl~IL~~L~~----~~~s~~ela~~lg-i----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 47 NRLRLLSLLAR----SELCVGDLAQAIG-V----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHTT----CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 46778888864 6899999999999 9 899999999999999998754
No 109
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=96.04 E-value=0.0073 Score=38.46 Aligned_cols=46 Identities=26% Similarity=0.377 Sum_probs=40.6
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
.+..|...|.+. +++|..|||+.+| . ++..+.|.++.|...|++..
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIR-I----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEE
Confidence 466788888763 6899999999999 9 99999999999999999985
No 110
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=96.03 E-value=0.0093 Score=37.96 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=41.1
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+..|.+.|.+. +++|..|||+.+| . .+..+.|.++.|...|++...
T Consensus 6 ~d~~il~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKD---SRLSMRELGRKIK-L----SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 456788888764 6899999999999 9 899999999999999999753
No 111
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=96.01 E-value=0.0053 Score=36.42 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=36.0
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcch-HHHHHHHHhccCcee
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTM-LDRILGLLASYGIVE 82 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~-l~RlLR~L~s~gi~~ 82 (89)
+.-.+...+ .++|..|||+.++ . ++.. +.|+++.|...|++.
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~-i----s~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASG-V----SEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHC-C----CHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHhcC--CCCCHHHHHHHHC-C----CchHHHHHHHHHHHHCCCee
Confidence 444556543 4899999999999 9 9999 999999999999998
No 112
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.00 E-value=0.0054 Score=40.05 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=45.3
Q ss_pred HHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 23 HMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 23 ~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
..+|.--..+.|...|.+ +|+|+.|||+.++ . .+..+.+-|+.|...|++...
T Consensus 52 l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lg-l----s~stvs~hL~~L~~aGlV~~~ 104 (151)
T 3f6v_A 52 LEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFP-A----SRSAISQHLRVLTEAGLVTPR 104 (151)
T ss_dssp HHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSS-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 445555677888888874 6899999999999 9 899999999999999999864
No 113
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.99 E-value=0.0067 Score=39.21 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=39.6
Q ss_pred HHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 24 MTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 24 ~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.++++.+.|. .++ ++++|++|||+.++ + ++..+.++|+.|...|++...
T Consensus 15 yAl~~L~~La------~~~-~~~~~~~~iA~~~~-i----~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 15 IAVHILSILK------NNP-SSLCTSDYMAESVN-T----NPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHHH------HSC-GGGCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHH------hCC-CCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEEc
Confidence 4666666553 222 26899999999999 9 999999999999999998754
No 114
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=95.94 E-value=0.014 Score=38.58 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=32.7
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+++|.++||+.++ + ++..|.++|+.|...|++...
T Consensus 27 ~~~s~~~IA~~~~-i----s~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 27 SKVASRELAQSLH-L----NPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp SCBCHHHHHHHHT-S----CGGGTHHHHHHHHHTTSSEEE
T ss_pred CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEee
Confidence 7899999999999 9 999999999999999998654
No 115
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.94 E-value=0.0093 Score=35.36 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=39.0
Q ss_pred HhChHHHHHhcCCCCCCCHHHH----HhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 31 NLGLFEIIAKAGPGAKLSASEI----AAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eL----A~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+..|+..|.+. +++|..|| |+.++ . ++..+.|+++.|...|++....
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~-i----s~~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFP-M----STATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSC-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHCCCEEEEe
Confidence 34566666653 68999999 99999 9 9999999999999999998653
No 116
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=95.89 E-value=0.011 Score=38.22 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=41.0
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+..|...|.+. +++|..|||+.+| . .+..+.|.++.|...|++...
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVA-L----SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEeee
Confidence 456788888874 5899999999999 9 899999999999999999853
No 117
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.87 E-value=0.011 Score=36.13 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=40.7
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
-.++.|+..|.+ ++.|..|||+.++ . ++..+.|.++.|...|++...
T Consensus 32 ~~~~~il~~L~~----~~~s~~ela~~l~-i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN----GPLPVTDLAEAIG-M----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH----CCCCHHHHHHHHS-S----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 356778888876 4799999999999 9 999999999999999998754
No 118
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=95.85 E-value=0.013 Score=37.34 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=41.6
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCC-CCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATK-NKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~-~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.+.-|.+.|.+.+ ++++|+.||.+.+. .. +.-+...++|.|+.|+..|++.+...
T Consensus 19 qR~~Il~~L~~~~-~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 19 PRVKILQMLDSAE-QRHMSAEDVYKALM-EAGEDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHHHCC--CCSBCHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHH-hhCCCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 4556888887642 16999999999983 21 11178889999999999999997754
No 119
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=95.85 E-value=0.013 Score=37.35 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=41.2
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+..|...|.+. +++|.+|||+.+| . .+..+.|.++.|...|++...
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILN-T----TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTT-S----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 466788888874 6899999999999 9 899999999999999999743
No 120
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.84 E-value=0.0097 Score=36.16 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=33.8
Q ss_pred CCCCHHHHHhhC-CCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 45 AKLSASEIAAQL-PATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 45 ~~~t~~eLA~~~-~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
++++..||++.+ + . ++..+.+.|+.|...|++.....
T Consensus 37 ~~~~~~eL~~~l~g-i----s~~~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 37 RIIRYGELKRAIPG-I----SEKMLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp SCEEHHHHHHHSTT-C----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCcCHHHHHHHccc-C----CHHHHHHHHHHHHHCCCEEEeec
Confidence 689999999999 7 8 89999999999999999987654
No 121
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.77 E-value=0.0094 Score=40.24 Aligned_cols=49 Identities=18% Similarity=-0.031 Sum_probs=40.6
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
+..|...|... +++|..|||+.++ . ++..+.|+++.|...|++....+.
T Consensus 50 q~~iL~~L~~~---~~~t~~eLa~~l~-i----~~stvs~~l~~Le~~GlV~r~~~~ 98 (207)
T 2fxa_A 50 EHHILWIAYQL---NGASISEIAKFGV-M----HVSTAFNFSKKLEERGYLRFSKRL 98 (207)
T ss_dssp HHHHHHHHHHH---TSEEHHHHHHHTT-C----CHHHHHHHHHHHHHHTSEEEECC-
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEecCC
Confidence 34456667665 5899999999999 9 999999999999999999876544
No 122
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=95.77 E-value=0.013 Score=36.68 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=40.1
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+..|...|.+. +++|..|||+.++ . .+..+.|.++.|...|++...
T Consensus 5 ~~~~il~~L~~~---~~~~~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 5 RDKIILEILEKD---ARTPFTEIAKKLG-I----SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEecc
Confidence 356677888763 5899999999999 9 899999999999999999643
No 123
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=95.73 E-value=0.014 Score=37.34 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=40.6
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
.+..|...|.+. +++|..|||+.+| . .+..+.|.++.|...|++..
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITG-L----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHC-S----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEE
Confidence 456788888874 6899999999999 9 89999999999999999875
No 124
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.72 E-value=0.015 Score=36.28 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+++|..|||+.++ . ++..+.|+++.|...|++...
T Consensus 30 ~~~s~~ela~~l~-i----s~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 30 EGAKINRIAKDLK-I----APSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHhC-C----ChHHHHHHHHHHHHCCCEEec
Confidence 7899999999999 9 999999999999999999864
No 125
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.70 E-value=0.018 Score=37.09 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=34.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
++++..||++.++ + ++..+.+.|+.|...|+++....
T Consensus 36 g~~~~~eLa~~lg-i----s~~tls~~L~~Le~~GlI~r~~~ 72 (146)
T 2f2e_A 36 GLTRFGEFQKSLG-L----AKNILAARLRNLVEHGVMVAVPA 72 (146)
T ss_dssp TCCSHHHHHHHHC-C----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEEEec
Confidence 6899999999999 9 99999999999999999987654
No 126
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=95.62 E-value=0.0074 Score=37.04 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=40.2
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+..|...|.+. +|+|+.||++.++ ...+-++..+.|+|+-|...|++....
T Consensus 37 e~~VL~~L~~~---~~~t~~eL~~~l~-~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL---GEARVDEIYAQIP-QELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH---SCEEHHHHHHTCC-GGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHh-cccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 45677788764 5899999999998 621224678999999999999998654
No 127
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.61 E-value=0.019 Score=35.94 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+++|..+||+.++ + ++..+.|+++.|...|++...
T Consensus 21 ~~~~~~ela~~l~-v----s~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 21 GYARVSDIAEALA-V----HPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp SSCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEEe
Confidence 5899999999999 9 999999999999999999765
No 128
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=95.57 E-value=0.0083 Score=38.37 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=29.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+++|..|||+.++ . ++..+.|+++.|...|+++..
T Consensus 51 ~~~t~~eLa~~l~-~----~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 51 IDLTMSELAARIG-V----ERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ---CHHHHHHHHT-C----CHHHHHHHHHHHHHTTSBC--
T ss_pred CCcCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCEEee
Confidence 6799999999999 9 999999999999999999543
No 129
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=95.56 E-value=0.012 Score=34.94 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=40.9
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcc-hHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPT-MLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~-~l~RlLR~L~s~gi~~e~ 84 (89)
.+-.|.+.|... ||.|+.+||+.++ + .+. .++|.|..|...|++...
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lg-i----t~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIG-L----TKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHC-G----GGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcC-C----CcHHHHHHHHHHHHHCCCEEec
Confidence 455678888875 6999999999999 9 898 999999999999999743
No 130
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=95.53 E-value=0.018 Score=37.99 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=41.1
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++..|...|.+. +++|..|||+.++ . .+..+.|.++.|...|++...
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lg-l----S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLK-K----PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEee
Confidence 466788888874 5899999999999 9 899999999999999999743
No 131
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=95.51 E-value=0.017 Score=36.89 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=41.1
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+..|...|.+. +++|..|||+.+| . .+..+.|.++.|...|++...
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFG-V----SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHT-S----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHcCCcceE
Confidence 456788888874 6899999999999 9 899999999999999999853
No 132
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.46 E-value=0.012 Score=37.34 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=34.0
Q ss_pred CCCCHHHHHhhC-CCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 45 AKLSASEIAAQL-PATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 45 ~~~t~~eLA~~~-~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
++++..||++.+ + + ++..|.+.|+.|...|++.....
T Consensus 47 g~~~~~eLa~~l~g-i----s~~tls~~L~~Le~~GlV~r~~~ 84 (131)
T 1yyv_A 47 GTHRFSDLRRXMGG-V----SEXMLAQSLQALEQDGFLNRVSY 84 (131)
T ss_dssp CCEEHHHHHHHSTT-C----CHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCHHHHHHHhcc-C----CHHHHHHHHHHHHHCCcEEEEec
Confidence 689999999999 8 9 99999999999999999987644
No 133
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.45 E-value=0.013 Score=35.21 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.....|.+.|.+. + +|+.|||+.+| + ....++|.|..|...|++....
T Consensus 17 ~~~~~IL~lL~~~---g-~sa~eLAk~Lg-i----Sk~aVr~~L~~Le~eG~I~~~~ 64 (82)
T 1oyi_A 17 EIVCEAIKTIGIE---G-ATAAQLTRQLN-M----EKREVNKALYDLQRSAMVYSSD 64 (82)
T ss_dssp HHHHHHHHHHSSS---T-EEHHHHHHHSS-S----CHHHHHHHHHHHHHHTSSEECS
T ss_pred HHHHHHHHHHHHc---C-CCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEeCC
Confidence 3455677788742 4 99999999999 9 8999999999999999998653
No 134
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=95.45 E-value=0.011 Score=43.03 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 20 SVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 20 ~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+..|.+++...+..|++.|. + +++|-.|||+.++ . .+..+.++++.|...|++.|.+.
T Consensus 11 ~~~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~g-l----s~~tv~~~v~~L~~~gli~~~~~ 68 (380)
T 2hoe_A 11 HHMPKSVRAENISRILKRIM-K---SPVSRVELAEELG-L----TKTTVGEIAKIFLEKGIVVEEKD 68 (380)
T ss_dssp -----------CCCSHHHHH-H---SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEEEEC
T ss_pred ccCchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEeecC
Confidence 45678889999999999999 6 6999999999999 9 89999999999999999998753
No 135
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.022 Score=39.93 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=40.9
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.++.|...|.+. +++|.+|||+.++ . ++..+.|.++.|...|++....
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lg-l----sksTv~r~L~~Le~~GlV~r~~ 200 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLD-K----SEKTLINKIAELKKFGILTQKG 200 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEeC
Confidence 355667777654 5899999999999 9 9999999999999999998763
No 136
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=95.39 E-value=0.021 Score=34.16 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=41.9
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+-.|.+.|.++| +|++..|||+.+| + |..-+.++|-.|-.-|.+...
T Consensus 20 ~eekVLe~LkeaG--~PlkageIae~~G-v----dKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 20 LEQRILQVLTEAG--SPVKLAQLVKECQ-A----PKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHHHT--SCEEHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHcCCccCC
Confidence 3557889999987 8999999999999 9 999999999999988876544
No 137
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=95.38 E-value=0.017 Score=40.61 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=42.6
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccCC
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDVD 89 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~~ 89 (89)
+..|...|..++ ++++|..|||+.++ . ++..+.|++.-|...|++....+.+|
T Consensus 160 q~~vL~~L~~~~-~~~~t~~eLa~~l~-i----~~~tvt~~v~rLe~~GlV~R~~~~~D 212 (250)
T 1p4x_A 160 EFTILAIITSQN-KNIVLLKDLIETIH-H----KYPQTVRALNNLKKQGYLIKERSTED 212 (250)
T ss_dssp HHHHHHHHHTTT-TCCEEHHHHHHHSS-S----CHHHHHHHHHHHHHHTSSEEEECSSS
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCEEeeCCCCC
Confidence 344555666554 13699999999999 9 99999999999999999998766554
No 138
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=95.29 E-value=0.027 Score=38.01 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=42.9
Q ss_pred HHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 26 MKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 26 L~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+.-..+..|...|.+ +++|..|||+.++ . .+..+.|.++.|...|++...
T Consensus 17 l~d~~~~~IL~~L~~----~~~s~~eLA~~lg-l----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 17 MLEDTRRKILKLLRN----KEMTISQLSEILG-K----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHSHHHHHHHHHHTT----CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHHc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 344567778888863 5899999999999 9 899999999999999999876
No 139
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=95.27 E-value=0.02 Score=33.01 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=40.2
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.+..|.+.|.+. +|+|+.||++.++ ...+-++..+.|+++.|...|++....
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~-~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELS-KTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHH-HHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHh-hcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 355677788763 6999999999986 411115788999999999999998654
No 140
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=95.26 E-value=0.025 Score=38.55 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=43.3
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+|.--..+.|...|.+ +|+|..||++.++ . ++..+++.|+.|...|++.....
T Consensus 11 aL~~~~rl~IL~~L~~----~~~s~~eLa~~l~-i----s~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 11 VLGNETRRRILFLLTK----RPYFVSELSRELG-V----GQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHSHHHHHHHHHHHH----SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HhCCHHHHHHHHHHHh----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCceEEEee
Confidence 3334455667777754 6899999999999 9 99999999999999999987543
No 141
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.25 E-value=0.028 Score=37.10 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=41.4
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
..+..|...|.+. +.+|..|||+.+| . .+..+.|-++.|...|++..
T Consensus 27 ~~d~~IL~~L~~~---~~~s~~eLA~~lg-l----S~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 27 EIDKKIIKILQND---GKAPLREISKITG-L----AESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEe
Confidence 3567888888874 6899999999999 9 89999999999999999875
No 142
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=95.22 E-value=0.017 Score=37.53 Aligned_cols=46 Identities=13% Similarity=0.274 Sum_probs=40.8
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
.+..|.+.|.+. +++|..|||+.+| . .+..+.|-++.|...|++..
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg-~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVG-L----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeee
Confidence 567888889764 6899999999999 9 89999999999999999874
No 143
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=95.22 E-value=0.022 Score=36.57 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=37.2
Q ss_pred HHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 24 MTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 24 ~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+|++.+.| +... ++ |++|||+.++ + .+..|.+||+.|...|++...
T Consensus 10 yAl~~L~~L------a~~~--~~-s~~~IA~~~~-i----~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 10 VAIHILSLI------SMDE--KT-SSEIIADSVN-T----NPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHH------HTCS--CC-CHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHH------HhCC--CC-CHHHHHHHHC-c----CHHHHHHHHHHHHHCCceEee
Confidence 355555543 4433 35 9999999999 9 999999999999999999754
No 144
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.13 E-value=0.034 Score=34.18 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=36.9
Q ss_pred hChHHHHHhcCCCCCCCHHHHHh-hCCCCCCCCCcchHHHHHHHHhccCcee
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAA-QLPATKNKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~-~~~~~~~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
..|.-.|++. ++.|+++||+ ..+ . |...+.|=++.|...|+++
T Consensus 19 fsiL~~L~~~---~~~t~~~Lae~~l~-~----drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 19 ATILITIAKK---DFITAAEVREVHPD-L----GNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHHHHHHHHS---TTBCHHHHHHTCTT-S----CHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHhc-c----cHHHHHHHHHHHHHCCCee
Confidence 3444556664 5999999999 999 9 9999999999999999998
No 145
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.11 E-value=0.033 Score=35.73 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=34.0
Q ss_pred CCCCHHHHHhhC-CCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 45 AKLSASEIAAQL-PATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 45 ~~~t~~eLA~~~-~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
|+++..||++.+ + + ++..|.+.|+.|...|++.....
T Consensus 38 g~~rf~eL~~~l~g-I----s~~~Ls~~L~~Le~~GLV~R~~~ 75 (131)
T 4a5n_A 38 GKKRFNEFRRICPS-I----TQRMLTLQLRELEADGIVHREVY 75 (131)
T ss_dssp SCBCHHHHHHHCTT-S----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCcCHHHHHHHhcc-c----CHHHHHHHHHHHHHCCCEEEEec
Confidence 799999999999 8 9 89999999999999999987643
No 146
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.06 E-value=0.032 Score=34.29 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCC--HHHHHhhC-CCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLS--ASEIAAQL-PATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t--~~eLA~~~-~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
|+.+ ..||++.+ + + .+..|.|.|+.|...|+++..
T Consensus 39 g~~~~~~~eL~~~l~g-i----s~~~ls~~L~~Le~~GlV~r~ 76 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPG-I----SSTILSRRIKDLIDSGLVERR 76 (111)
T ss_dssp SSSCBCHHHHHHTSTT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHccC-C----CHHHHHHHHHHHHHCCCEEEe
Confidence 5777 99999999 8 9 899999999999999999865
No 147
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=94.96 E-value=0.032 Score=37.28 Aligned_cols=42 Identities=31% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+.+.+.| .|.|..|||+.++ . ....+.|.|+.|...|++...
T Consensus 16 ~~~~~~g--~~~s~~eia~~lg-l----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 16 EFIEKNG--YPPSVREIARRFR-I----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHS--SCCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHhC--CCCCHHHHHHHcC-C----CcHHHHHHHHHHHHCCCEEec
Confidence 3455555 7999999999999 9 666899999999999998764
No 148
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=94.87 E-value=0.043 Score=40.09 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=45.6
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
-+|..-+..|++.|.++ +++|-.|||+.++ . .+..+.++++.|...|++.|.+.
T Consensus 12 ~~r~~n~~~il~~l~~~---~~~sr~~la~~~~-l----s~~tv~~~v~~L~~~g~i~~~~~ 65 (406)
T 1z6r_A 12 QIKQTNAGAVYRLIDQL---GPVSRIDLSRLAQ-L----APASITKIVHEMLEAHLVQELEI 65 (406)
T ss_dssp CHHHHHHHHHHHHHHSS---CSCCHHHHHHHTT-C----CHHHHHHHHHHHHHHTSEEEC--
T ss_pred HHHHhHHHHHHHHHHHc---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCcEEeecc
Confidence 35566667789999875 6999999999999 9 89999999999999999998643
No 149
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.85 E-value=0.018 Score=34.13 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=30.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCce
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIV 81 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~ 81 (89)
.++|..|||+.++ . ++..+.|++..|...|++
T Consensus 29 ~~~t~~eLa~~l~-i----~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 29 NDVYIQYIASKVN-S----PHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CCEEHHHHHHHSS-S----CHHHHHHHHHHHHHTTSE
T ss_pred CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCcCc
Confidence 4599999999999 9 999999999999999999
No 150
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=94.84 E-value=0.028 Score=31.73 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=40.4
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCcee
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
|-.|.+.|..+| |-+.++..++..+ + +...+..+||-|...|+++
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kyg-V----~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYG-V----EKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHC-C----CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhC-C----CHHHHHHHHHHHHHCCCee
Confidence 445778888876 8999999999999 9 9999999999999999986
No 151
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.69 E-value=0.041 Score=33.75 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=34.7
Q ss_pred CCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 44 GAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 44 ~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+++++..+||+.+. . +...|.|++..|...|++.....
T Consensus 34 g~~~s~~eLa~~l~-l----~~stLsR~l~rLe~~GLV~r~~~ 71 (96)
T 2obp_A 34 ATPWSLPKIAKRAQ-L----PMSVLRRVLTQLQAAGLADVSVE 71 (96)
T ss_dssp CCCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCcCHHHHHHHhC-C----chhhHHHHHHHHHHCCCEEeecC
Confidence 47899999999999 9 99999999999999999996544
No 152
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=94.69 E-value=0.042 Score=34.63 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=41.2
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.+..|..+|.+.. +|+|..||++.++ ...+-++..+.|++.-|...|++....
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~-~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALS-ARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHT-TTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHh-ccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 3556677787632 6899999999997 422227889999999999999998654
No 153
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=94.64 E-value=0.023 Score=36.85 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=41.1
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCC-CCCCcchHHHHHHHHhccCceeeecc
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATK-NKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~-~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.+.-|.+.|.+.+ ++++|+.||.+.+. .. +.-+...++|.|+.|+..|++.+...
T Consensus 18 qR~~Il~~L~~~~-~~h~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 73 (150)
T 2w57_A 18 PRLKILEVLQQPE-CQHISAEELYKKLI-DLGEEIGLATVYRVLNQFDDAGIVTRHHF 73 (150)
T ss_dssp HHHHHHHHHTSGG-GSSEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 4556788887542 15899999999983 21 11178889999999999999987643
No 154
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=94.58 E-value=0.034 Score=33.96 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=40.6
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.+..|...|.+. +|+|..||++.++ ...+-++..+.++++-|...|++....
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~-~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQ-KYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHH-TTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHh-hcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 345666777764 5899999999997 522226889999999999999998654
No 155
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=94.55 E-value=0.047 Score=35.11 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCC-CCCcchHHHHHHHHhccCceeeecc
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATKN-KDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~-~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
..+.-|++.|.+. +++|+.||.+.+. ... .-+...++|.|..|+..|++.+...
T Consensus 19 ~qR~~Il~~l~~~---~h~ta~ei~~~l~-~~~~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 19 PQRQLVLEAVDTL---EHATPDDILGEVR-KTASGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp HHHHHHHHHHHHH---SSBCHHHHHHHHH-TTCTTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHHHhc---CCCCHHHHHHHHH-hhCCCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 3456688888775 3899999999875 322 2277889999999999999987654
No 156
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.49 E-value=0.036 Score=33.18 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=38.3
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
-.++.|+..+... +++|+.|||+.++ . .+..+.|-++.|... ++...
T Consensus 27 ~~Rl~IL~~l~~~---~~~~~~ela~~l~-i----s~stvs~hL~~L~~~-lv~~~ 73 (99)
T 2zkz_A 27 PMRLKIVNELYKH---KALNVTQIIQILK-L----PQSTVSQHLCKMRGK-VLKRN 73 (99)
T ss_dssp HHHHHHHHHHHHH---SCEEHHHHHHHHT-C----CHHHHHHHHHHHBTT-TBEEE
T ss_pred HHHHHHHHHHHHC---CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHH-hhhhe
Confidence 4566777555443 5899999999999 9 899999999999999 87643
No 157
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=94.49 E-value=0.064 Score=39.62 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=46.7
Q ss_pred HHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 26 MKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 26 L~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+|..-+..|++.|.+. +++|-.|||+.++ . .+..+.++++.|...|++.|..
T Consensus 36 ~r~~n~~~il~~l~~~---~~~sr~ela~~~g-l----s~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK---GPISRIDLSKESE-L----APASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHHHHHH---CSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHHHc---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEecc
Confidence 6666777899999876 6999999999999 9 8999999999999999999875
No 158
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=94.38 E-value=0.033 Score=41.21 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=41.7
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccCC
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDVD 89 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~~ 89 (89)
..|...|.++. ++++|..|||+.++ . ++..+.|+++-|...|++....+..|
T Consensus 407 ~~vl~~l~~~~-~~~~~~~~l~~~~~-~----~~~~~t~~~~~le~~g~v~r~~~~~D 458 (487)
T 1hsj_A 407 IYILNHILRSE-SNEISSKEIAKCSE-F----KPYYLTKALQKLKDLKLLSKKRSLQD 458 (487)
T ss_dssp HHHHHHHHTCS-CSEEEHHHHHHSSC-C----CHHHHHHHHHHHHTTTTSCCEECCSS
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEeecCCCCC
Confidence 34555666542 26899999999999 9 99999999999999999987755443
No 159
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=94.34 E-value=0.057 Score=35.48 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=41.7
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCC---CCCCcchHHHHHHHHhccCceeeec
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATK---NKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~---~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.+.-|++.|.+.+ +++|++||.+.+. .. +.-+...++|-|..|+..|++.+..
T Consensus 34 qR~~IL~~L~~~~--~h~sA~eI~~~l~-~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 34 QREVLLKTLYHSD--THYTPESLYMEIK-QAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHHSCC--SCBCHHHHHHHHH-HHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHhCC--CCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 5567889998765 8999999988764 21 1116778999999999999999874
No 160
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=94.33 E-value=0.048 Score=34.36 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=32.7
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.+.|.++||+.++ . ++.-+.|+++.|...|++....+
T Consensus 50 ~~ps~~~LA~~l~-~----s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 50 LFPTPAELAERMT-V----SAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SSCCHHHHHHTSS-S----CHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEeE
Confidence 3479999999999 9 99999999999999999987544
No 161
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=94.25 E-value=0.015 Score=35.47 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=38.8
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+..|...|... +|+|..|||+.++ ...+-.+..+.|+++.|...|++....
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~-~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQ-MQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHh-ccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 34556666653 6899999999988 611113789999999999999998654
No 162
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=94.24 E-value=0.032 Score=40.57 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=37.3
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
+||..| . +|.|+.|||..++ . ++..++++|+.|++.|+++.
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g-~----~~~~v~~~L~~l~~~gll~~ 87 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSE-E----PLPLVVAILESLNELGYVTF 87 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHh-c----CCCCHHHHHHHhC-C----ChHHHHHHHHHHhhCCcEEE
Confidence 778888 4 5899999999999 9 99999999999999999864
No 163
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.10 E-value=0.14 Score=32.34 Aligned_cols=43 Identities=21% Similarity=0.405 Sum_probs=36.3
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
|...|... ++.|..+||+.++ + ++..+.|.++.|...|++...
T Consensus 45 i~~~l~~~---~~~~~~~la~~l~-v----s~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 45 ISDLIREV---GEARQVDMAARLG-V----SQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp HHHHHHHH---SCCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhC---CCcCHHHHHHHhC-c----CHHHHHHHHHHHHHCCCEEEe
Confidence 34456553 5789999999999 9 999999999999999998754
No 164
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=93.91 E-value=0.061 Score=37.68 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=40.9
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecccCC
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDDVD 89 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~~~ 89 (89)
.|...|.+.+ .+++|..|||+.+. . ++..+.|++.-|...|++....+..|
T Consensus 38 ~vL~~L~~~~-~~~~~~~el~~~l~-~----~~~t~t~~l~rLe~~G~i~R~~~~~D 88 (250)
T 1p4x_A 38 ILLTYLFHQQ-ENTLPFKKIVSDLC-Y----KQSDLVQHIKVLVKHSYISKVRSKID 88 (250)
T ss_dssp HHHHHHHSCS-CSEEEHHHHHHHSS-S----CGGGTHHHHHHHHHTTSCEEEECSSS
T ss_pred HHHHHHHhcC-CCCcCHHHHHHHHC-C----CHhhHHHHHHHHHHCCCEEecCCCCC
Confidence 3445566542 25899999999999 9 99999999999999999987755544
No 165
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=93.78 E-value=0.036 Score=36.98 Aligned_cols=48 Identities=25% Similarity=0.445 Sum_probs=39.1
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+.+.|...|.+ +|+|+.||++.++.. ....+++-|+.|...|+++...
T Consensus 24 ~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~ 71 (182)
T 4g6q_A 24 LRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTA 71 (182)
T ss_dssp HHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEE
Confidence 56778888864 799999999998515 5568999999999999998543
No 166
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=93.62 E-value=0.11 Score=32.23 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=34.7
Q ss_pred HHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhc
Q 045477 28 AVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLAS 77 (89)
Q Consensus 28 ~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s 77 (89)
.+...||+..|.+ |++|-.|||+.+| + ....+.|+=|.|-.
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lG-i----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELG-A----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHC-C----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHC-C----ChhhhhHHHHHHHH
Confidence 3456888988876 6899999999999 9 89999999888753
No 167
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=93.41 E-value=0.11 Score=34.43 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=40.1
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCc-ee
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGI-VE 82 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi-~~ 82 (89)
--...|.+.|.+.+ +++|.+|||+.++ + ....++|=++.|...|+ +.
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~-v----S~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELS-V----SRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHT-S----CHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEE
Confidence 44567888888654 6899999999999 9 89999999999999998 54
No 168
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=92.95 E-value=0.03 Score=39.16 Aligned_cols=50 Identities=10% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
+|.--..+.|...|.+ +|+|..|||+.++ . .+..+.+.|+.|...|++..
T Consensus 8 aL~~~~R~~IL~~L~~----g~~s~~ELa~~lg-l----S~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 8 ILGNKVRRDLLSHLTC----MECYFSLLSSKVS-V----SSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHTSHHHHHHHHHHTT----TTTCSSSSCTTCC-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred HhCCHHHHHHHHHHHh----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEE
Confidence 3444456778888864 6899999999999 9 89999999999999999987
No 169
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=92.82 E-value=0.32 Score=32.08 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
..+.|+..|..++ .+..|+.||++.++.+ ....|+|-|+.|+..|++.+.
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~ 79 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKI 79 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 4566777776653 3679999999988755 778999999999999999865
No 170
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=92.52 E-value=0.25 Score=29.68 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=36.3
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
|+++|..-.. + ++..+||..++ . ++..+.+.++.|...|++...
T Consensus 10 i~~IL~~i~~-~-~~~t~La~~~~-l----s~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 10 IQAILEACKS-G-SPKTRIMYGAN-L----SYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHHTT-C-BCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHc-C-CCHHHHHHHhC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 3455544332 4 99999999999 9 999999999999999999875
No 171
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=92.10 E-value=0.13 Score=34.90 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=38.9
Q ss_pred HhChHHHHHhcC---CCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 31 NLGLFEIIAKAG---PGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 31 ~LgIfd~l~~~g---~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+.+|..|+..+ ..+++|.+++|+.++ . ++..+.|.++.|...|+|...
T Consensus 9 ~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~-i----sq~avSr~I~~LE~~~L~~R~ 60 (230)
T 3cta_A 9 YYRAIKKIKEAAEASNRAYLTSSKLADMLG-I----SQQSASRIIIDLEKNGYITRT 60 (230)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEE
Confidence 345555555433 125789999999999 9 899999999999999999876
No 172
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.04 E-value=0.16 Score=34.41 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=33.7
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
++++..+||+.++ + ++..+.|+++.|...|++....
T Consensus 19 ~~~~~~~lA~~l~-v----s~~tvs~~l~~Le~~GlV~r~~ 54 (214)
T 3hrs_A 19 NKITNKEIAQLMQ-V----SPPAVTEMMKKLLAEELLIKDK 54 (214)
T ss_dssp SCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCcCHHHHHHHHC-C----ChhHHHHHHHHHHHCCCEEEec
Confidence 7999999999999 9 9999999999999999998654
No 173
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=91.29 E-value=0.35 Score=25.98 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=24.6
Q ss_pred CCCCHHHHHhhC-----CCCCCCCCcchHHHHHHHHhccCce
Q 045477 45 AKLSASEIAAQL-----PATKNKDAPTMLDRILGLLASYGIV 81 (89)
Q Consensus 45 ~~~t~~eLA~~~-----~~~~~~~d~~~l~RlLR~L~s~gi~ 81 (89)
+++|++||++.+ + + +...++|-|. ..|++
T Consensus 18 ~~~t~~el~~~l~~~~~~-v----s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYK-V----TQATVSRDIK---ELHLV 51 (64)
T ss_dssp CCCSHHHHHHHHHHTTCC-C----CHHHHHHHHH---HHTCE
T ss_pred CCCCHHHHHHHHHHhCCC-c----CHHHHHHHHH---HcCCE
Confidence 699999999999 7 8 8888998888 44766
No 174
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=91.27 E-value=0.15 Score=30.42 Aligned_cols=36 Identities=33% Similarity=0.429 Sum_probs=32.3
Q ss_pred CCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 45 AKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 45 ~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
..+ |..|||+.++ + ....+++.++.|...|++....
T Consensus 33 ~~lps~~eLa~~~~-v----Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 33 DTLPSVADIRAQFG-V----AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp SBCCCHHHHHHHSS-S----CTTHHHHHTTTTTTSSCCEEET
T ss_pred CCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEeC
Confidence 566 9999999999 9 8889999999999999997543
No 175
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=91.08 E-value=0.18 Score=32.41 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=31.6
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+++.|...|++...
T Consensus 164 ~~t~~~lA~~lg-~----sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVG-C----SREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEec
Confidence 589999999999 9 999999999999999998754
No 176
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=91.02 E-value=0.24 Score=31.70 Aligned_cols=35 Identities=6% Similarity=0.041 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+.|.++||+.++ . ++.-+.|+++.|...|++.-.
T Consensus 50 ~~ps~~~LA~~~~-~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMS-I----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSS-S----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 5679999999999 9 999999999999999999864
No 177
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=90.98 E-value=0.26 Score=35.04 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=31.6
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCcee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
+++|.+|||++++ + ....++|.|..|...|+++
T Consensus 20 ~~~~~~ela~~l~-v----S~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 20 QDMTQAQIARELG-I----YRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp SCCCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEE
Confidence 6799999999999 9 9999999999999999997
No 178
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=90.83 E-value=0.28 Score=32.18 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=32.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
-++|-++||..+| + .+..+.|+++.|...|++...
T Consensus 179 ~~~t~~~lA~~lg-~----sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 179 IYLSREELATLSN-M----TVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CCCCHHHHHHHTT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cccCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEeeC
Confidence 4689999999999 9 999999999999999998754
No 179
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=90.74 E-value=0.24 Score=32.54 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+|+.|...|++...
T Consensus 175 ~~t~~~iA~~lg-~----sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 175 PLGTQDIMARTS-S----SRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhC-C----cHHHHHHHHHHHHHCCcEEec
Confidence 689999999999 9 999999999999999999754
No 180
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=90.73 E-value=0.25 Score=32.06 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=31.9
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+++.|...|+++..
T Consensus 169 ~~t~~~lA~~lg-~----sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLG-S----HREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEeC
Confidence 889999999999 9 999999999999999999754
No 181
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=90.73 E-value=0.21 Score=32.18 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=32.2
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
++|-++||..+| + .+..+.|+++.|...|+++...
T Consensus 167 ~~t~~~iA~~lg-~----sr~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 167 KITRQEIGQIVG-C----SRETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp ECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhC-C----cHHHHHHHHHHHHHCCcEEeCC
Confidence 689999999999 9 9999999999999999998543
No 182
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=90.43 E-value=0.23 Score=32.47 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=32.0
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|+|-++||..+| + .+..+.|+++.|...|+++...
T Consensus 187 ~lt~~~lA~~lg-~----sr~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 187 RVSRQELARLVG-C----SREMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp ECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhC-C----cHHHHHHHHHHHHHCCCEEECC
Confidence 489999999999 9 9999999999999999998653
No 183
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=90.28 E-value=0.25 Score=30.24 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=32.8
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|..+ |..+||+..+ + ....+++.++.|...|++....
T Consensus 30 G~~lPs~~~La~~~~-v----Sr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQ-I----NPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp TCEECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCcCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEec
Confidence 3566 9999999999 9 8999999999999999987553
No 184
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=90.27 E-value=0.24 Score=31.96 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=31.5
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+++.|...|++...
T Consensus 146 ~~t~~~lA~~lg-~----sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 146 KATHDELAAAVG-S----VRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp ECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEeC
Confidence 589999999999 9 999999999999999999754
No 185
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=90.26 E-value=0.42 Score=30.06 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=33.0
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|..+ |..+||+..+ + ....+++.++.|...|++....
T Consensus 25 G~~LPse~~La~~~g-v----Sr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 25 DQRVPSTNELAAFHR-I----NPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp TSCBCCHHHHHHHTT-C----CHHHHHHHHHHHHTTTSEEEET
T ss_pred CCcCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEEec
Confidence 4667 9999999999 9 9999999999999999997554
No 186
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=90.05 E-value=0.26 Score=31.73 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+|+.|...|+++..
T Consensus 139 ~~t~~~lA~~lg-~----sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 139 TVSHEEIADATA-S----IRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp ECCHHHHHHTTT-S----CHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEec
Confidence 589999999999 9 999999999999999998754
No 187
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=90.00 E-value=0.26 Score=32.20 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+++.|...|++...
T Consensus 167 ~~t~~~lA~~lg-~----sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 167 GLNTEEIALMLG-T----TRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp SSCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEES
T ss_pred cCCHHHHHHHhC-C----cHHHHHHHHHHHHHCCCEEEc
Confidence 789999999999 9 999999999999999998753
No 188
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=89.95 E-value=0.28 Score=32.13 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+++.|...|++...
T Consensus 163 ~~t~~~lA~~lG-~----sr~tvsR~l~~L~~~g~I~~~ 196 (222)
T 1ft9_A 163 DFTVEEIANLIG-S----SRQTTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp CCCHHHHHHHHC-S----CHHHHHHHHHHHHHTTSSEEC
T ss_pred cCCHHHHHHHhC-C----cHHHHHHHHHHHHHCCcEEEc
Confidence 489999999999 9 999999999999999998754
No 189
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=89.94 E-value=0.26 Score=31.85 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=32.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
-++|-++||..+| + .+..+.|+++.|...|++...
T Consensus 162 ~~~t~~~lA~~lg-~----sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 162 FQIRHHELAALAG-T----SRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp EECCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEec
Confidence 3689999999999 9 999999999999999999754
No 190
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=89.88 E-value=0.31 Score=31.87 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+++.|...|++...
T Consensus 177 ~~t~~~lA~~lg-~----sr~tvsR~l~~l~~~g~I~~~ 210 (227)
T 3d0s_A 177 DLTQEEIAQLVG-A----SRETVNKALADFAHRGWIRLE 210 (227)
T ss_dssp CCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhC-C----cHHHHHHHHHHHHHCCCEEec
Confidence 689999999999 9 999999999999999998754
No 191
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=89.81 E-value=1.1 Score=27.59 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=40.8
Q ss_pred HHHHHHhChHHHHHhcCCCCCCCHHHHHhhC------CCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 26 MKAVINLGLFEIIAKAGPGAKLSASEIAAQL------PATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 26 L~~av~LgIfd~l~~~g~~~~~t~~eLA~~~------~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
++-.+++-|.-+|.+ +|++--||++.+ + + ++..|+++|+-|...|++....
T Consensus 8 ~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~-i----s~gtlY~~L~rLe~~GlI~~~~ 64 (117)
T 4esf_A 8 LKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTE-V----VEGTVYTILVRLEKKKLVNIEK 64 (117)
T ss_dssp HHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTT-C----CHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCC-C----CccHHHHHHHHHHHCCCEEEEe
Confidence 344455556667775 699999999987 5 6 8889999999999999998653
No 192
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=89.77 E-value=0.43 Score=31.69 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCCHHHHHhhCCCCCCCCCc-chHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAP-TMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~-~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+ ..+.|+|+.|...|++...
T Consensus 169 ~~t~~~lA~~lG-~----sr~etvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 169 NLTMQELGYSSG-I----AHSSAVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp CCCHHHHHHHTT-C----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhC-C----ChHHHHHHHHHHHHHCCCEEec
Confidence 789999999999 9 89 6999999999999998754
No 193
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=89.76 E-value=0.26 Score=32.09 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=32.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
-++|-++||..+| + .+..+.|+++.|...|++...
T Consensus 177 ~~~t~~~lA~~lg-~----sr~tvsR~l~~l~~~g~I~~~ 211 (227)
T 3dkw_A 177 IPVAKQLVAGHLS-I----QPETFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp CCSCTHHHHHHTT-S----CHHHHHHHHHHHHHHTSEEES
T ss_pred ecCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCcEEec
Confidence 4689999999999 9 999999999999999999754
No 194
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=89.54 E-value=0.34 Score=32.35 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
-++|-++||..+| + .+..+.|+|+.|...|++...
T Consensus 192 ~~lt~~~lA~~lG-~----sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 192 LKLSHQAIAEAIG-S----TRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp SCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCCHHHHHHHHC-C----cHHHHHHHHHHHHHCCCEEEc
Confidence 3689999999999 9 999999999999999999854
No 195
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=89.42 E-value=0.33 Score=32.44 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=32.2
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
++|-++||..+| + .+..+.|+++.|...|+++...
T Consensus 177 ~~t~~~iA~~lG-~----sr~tvsR~l~~L~~~g~I~~~~ 211 (250)
T 3e6c_C 177 PLSQKSIGEITG-V----HHVTVSRVLASLKRENILDKKK 211 (250)
T ss_dssp CCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCHHHHHHHhC-C----cHHHHHHHHHHHHHCCCeEeCC
Confidence 789999999999 9 9999999999999999997543
No 196
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=89.41 E-value=0.3 Score=29.67 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=32.3
Q ss_pred CCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 45 AKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 45 ~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+.+ |..|||+.++ + ....+++-++.|...|++....
T Consensus 41 ~~lps~~eLa~~lg-V----Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 41 EGLLVASKIADRVG-I----TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp EEEECHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEe
Confidence 556 9999999999 9 8999999999999999997554
No 197
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=89.24 E-value=0.47 Score=29.78 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=37.8
Q ss_pred hHHHHHhc-CCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 34 LFEIIAKA-GPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 34 Ifd~l~~~-g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.+|.|.+. ..-.-+|...|++++. + .-.+-+++||.|.+.|++..+.
T Consensus 46 t~dkl~KEVpk~KlITpsvlseRlk-I----~gSLAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 46 KYDRILKEVPTYRYVSVSVLVDRLK-I----GGSLARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp HHHHHHHHCSSCSSBSHHHHHHTTC-C----CTTHHHHHHHHHSSSSSCEEEE
T ss_pred HHHHHHHHccCCeEEeHHHhhhhhh-h----hHHHHHHHHHHHHHCCCEEEEe
Confidence 45555543 2225689999999999 9 8999999999999999998763
No 198
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=89.17 E-value=0.56 Score=34.18 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=35.2
Q ss_pred HHHhcCCCCCCCHHHHHhhC--CCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 37 IIAKAGPGAKLSASEIAAQL--PATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~--~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+..+ +|+++.+|++.. + + .+..++|-|..|...|++..+
T Consensus 30 yl~~~---~pV~s~~La~~~~l~-V----S~aTIRrDL~~LE~~GlL~r~ 71 (338)
T 1stz_A 30 YIENK---KPVSSQRVLEVSNIE-F----SSATIRNDMKKLEYLGYIYQP 71 (338)
T ss_dssp HHHHC---SCBCHHHHHHHSCCC-S----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHcC---CCccHHHHHHHhCCC-C----CHHHHHHHHHHHHHCCCEEEc
Confidence 45543 799999999998 8 8 899999999999999999865
No 199
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=89.11 E-value=0.65 Score=30.38 Aligned_cols=48 Identities=15% Similarity=0.351 Sum_probs=38.8
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCC-------CCCCCCcchHHHHHHHHhccCceeeec
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPA-------TKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~-------~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+++-|.-.|.+ +|++.-||++.+.. + .+..|++.|+-|...|++....
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECC
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEe
Confidence 45556777775 69999999998831 5 7889999999999999998653
No 200
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=88.74 E-value=0.37 Score=30.13 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=33.0
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|..+ |..+||+..+ + ....+++-++.|...|++....
T Consensus 32 G~~lPse~~La~~~~-v----Sr~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 32 NDQLPSVRETALQEK-I----NPNTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp TCEECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCcCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEec
Confidence 3667 9999999999 9 8999999999999999997553
No 201
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=88.64 E-value=0.34 Score=32.04 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=31.5
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+++.|...|+++..
T Consensus 186 ~~t~~~lA~~lG-~----sr~tvsR~l~~l~~~glI~~~ 219 (232)
T 1zyb_A 186 KVKMDDLARCLD-D----TRLNISKTLNELQDNGLIELH 219 (232)
T ss_dssp ECCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSCEEE
T ss_pred cCCHHHHHHHhC-C----ChhHHHHHHHHHHHCCCEEec
Confidence 589999999999 9 999999999999999998754
No 202
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=88.36 E-value=0.34 Score=31.82 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=37.2
Q ss_pred hHHHHHhc-CCC-CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 34 LFEIIAKA-GPG-AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 34 Ifd~l~~~-g~~-~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+|.|.+. ..- .-+|...|++++. + +-.+-+++||.|...|++..+
T Consensus 49 tydKL~KEVpk~gKlITpsvlseRlk-I----~gSLARkaLreL~~kGlIk~V 96 (143)
T 2xzm_8 49 NVESIINNPSKVGKVLTVSTVVEKLK-V----NGSLARQLMRTMADRKLVEKV 96 (143)
T ss_dssp HHHHHHTCCTTSCSEECHHHHHHHHC-B----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhcccceeecHHHHHHHhc-c----hHHHHHHHHHHHHHCCCEEEE
Confidence 45556543 211 4689999999999 9 999999999999999999876
No 203
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=88.34 E-value=0.65 Score=29.05 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=34.1
Q ss_pred HHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhc
Q 045477 28 AVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLAS 77 (89)
Q Consensus 28 ~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s 77 (89)
.+-.+.|+..|.+ +.|..||++.+| + ....+.|+-|.|-.
T Consensus 45 laqR~~Ia~lL~~-----G~SyreIa~~tG-~----StaTIsRv~r~L~~ 84 (107)
T 3frw_A 45 LSQRFEVAKMLTD-----KRTYLDISEKTG-A----STATISRVNRSLNY 84 (107)
T ss_dssp HHHHHHHHHHHHT-----TCCHHHHHHHHC-C----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----CCCHHHHHHHHC-c----cHHHHHHHHHHHHc
Confidence 4567889999885 399999999999 9 88899999998864
No 204
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.28 E-value=0.65 Score=32.42 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=39.3
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHH-HHhccCceeeec
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILG-LLASYGIVECSV 85 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR-~L~s~gi~~e~~ 85 (89)
..++..+.+.+ +.+.+.+++|+.++ . +...++|.++ +|...|++..+.
T Consensus 266 ~~~l~~l~~~~-~~~~~~~~~a~~lg-~----~~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 266 LRYLELLTAAK-QKPIGLASIAAALS-E----DENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp HHHHHHHHHSC-SCCBCHHHHHHHTT-C----CHHHHHHTTHHHHHHTTSEEEET
T ss_pred HHHHHHHHHhc-CCCchHHHHHHHhC-C----CHHHHHHHHhHHHHHcCceecCC
Confidence 44566666653 47899999999999 9 9999999999 999999987653
No 205
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=88.23 E-value=0.49 Score=32.37 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 43 PGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 43 ~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+|..++..+||+.+| + ....+++-|+.|...|++....
T Consensus 46 pG~~L~e~~La~~lg-V----Sr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 46 SGTALRQQELATLFG-V----SRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp TTCBCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CcCeeCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEeC
Confidence 357899999999999 9 9999999999999999998653
No 206
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=88.22 E-value=0.58 Score=29.07 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=32.8
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|..+ |..+||+..+ + ....+++.++.|+..|++....
T Consensus 34 g~~Lps~~~La~~~~-v----Sr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 34 EDKLPSVREMGVKLA-V----NPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp TCBCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCeEEEec
Confidence 3566 7999999999 9 9999999999999999997653
No 207
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=87.94 E-value=0.48 Score=34.01 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=38.6
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+..|.+.|.+ + +++|.+|||+.++ + .+..++|-++.|...|+..+.
T Consensus 7 ~~~Il~~L~~-~--~~~s~~eLa~~l~-v----S~~ti~r~l~~L~~~G~~i~~ 52 (321)
T 1bia_A 7 PLKLIALLAN-G--EFHSGEQLGETLG-M----SRAAINKHIQTLRDWGVDVFT 52 (321)
T ss_dssp HHHHHHHHTT-S--SCBCHHHHHHHHT-S----CHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHc-C--CCcCHHHHHHHHC-C----CHHHHHHHHHHHHhCCCcEEE
Confidence 3457777854 2 6899999999999 9 999999999999999987643
No 208
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=87.78 E-value=1.3 Score=25.97 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=32.3
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+..|+.+||.++| . ...-+.|+|=-|...|.+....+
T Consensus 28 ~~~Ta~~IAkkLg-~----sK~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 28 DYTTAISLSNRLK-I----NKKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp CEECHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEECC
T ss_pred cchHHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEecCCC
Confidence 5699999999999 9 88889999999999998876543
No 209
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=87.69 E-value=0.6 Score=28.22 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=38.5
Q ss_pred HHHHhChHHHHHhcCCCCCCCHHHHHhhC----CCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 28 AVINLGLFEIIAKAGPGAKLSASEIAAQL----PATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 28 ~av~LgIfd~l~~~g~~~~~t~~eLA~~~----~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
-..++-|.-.|.+ +|++--||.+.+ + + ++..|+++|+-|...|++....
T Consensus 8 g~l~~~IL~~L~~----~~~~gyel~~~l~~~~~-i----~~~tly~~L~~Le~~GlI~~~~ 60 (108)
T 3l7w_A 8 LLIEYLILAIVSK----HDSYGYDISQTIKLIAS-I----KESTLYPILKKLEKAGYLSTYT 60 (108)
T ss_dssp HHHHHHHHHHHHH----SCEEHHHHHHHHTTTCC-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHc----CCCcHHHHHHHHHHHhC-C----CcChHHHHHHHHHHCCCeEEEe
Confidence 3455566677776 588888887774 6 7 8889999999999999998654
No 210
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=87.63 E-value=0.57 Score=32.63 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=38.3
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
|.+..+|+-+ +|+|-.||++..| + ++ ..++|.|...|++.+.++.
T Consensus 103 LEtLaiIAy~---QPITR~eI~~irG-v----~~---~~~v~~Lle~gLI~e~Gr~ 147 (219)
T 2z99_A 103 LETLAVVAYR---QPVTRARVSAVRG-V----NV---DAVMRTLLARGLITEVGTD 147 (219)
T ss_dssp HHHHHHHHHH---CSEEHHHHHHHHT-S----CC---HHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHC-C----CH---HHHHHHHHHCCCEEEcccc
Confidence 4577888875 6999999999999 8 54 7899999999999998643
No 211
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=87.42 E-value=2.1 Score=26.13 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=40.8
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhC--------CCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQL--------PATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~--------~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.++-..++-|.-+|.+ +|++--||.+.+ + + ++..|+++|+-|...|++....
T Consensus 8 ~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~-i----~~gtly~~L~rLe~~GlI~~~~ 67 (116)
T 3f8b_A 8 MLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEME-L----NEATLYTIFKRLEKDGIISSYW 67 (116)
T ss_dssp HHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCC-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCC-C----CcchHHHHHHHHHHCCCEEEEe
Confidence 3444456666677776 689999998887 4 5 7889999999999999998653
No 212
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=87.35 E-value=0.45 Score=32.20 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+|+.|...|+++..
T Consensus 217 ~lt~~~lA~~lG-~----sr~tvsR~l~~L~~~GlI~~~ 250 (260)
T 3kcc_A 217 KITRQEIGQIVG-C----SRETVGRILKMLEDQNLISAH 250 (260)
T ss_dssp ECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEEc
Confidence 689999999999 9 999999999999999999854
No 213
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=87.17 E-value=1.3 Score=25.98 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=29.4
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhcc
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASY 78 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~ 78 (89)
|-+.|.++-.++++|+++||+.++ . .+..|.|+++.....
T Consensus 7 i~~~i~~~~~~~~~~~~~lA~~~~-~----S~~~l~r~fk~~~g~ 46 (103)
T 3lsg_A 7 IQNIIEESYTDSQFTLSVLSEKLD-L----SSGYLSIMFKKNFGI 46 (103)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHTT-C----CHHHHHHHHHHHHSS
T ss_pred HHHHHHHHccCCCCCHHHHHHHHC-c----CHHHHHHHHHHHHCc
Confidence 344455442224899999999999 9 999999998766543
No 214
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=87.01 E-value=0.91 Score=28.86 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=34.2
Q ss_pred HHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhc
Q 045477 27 KAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLAS 77 (89)
Q Consensus 27 ~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s 77 (89)
..+-.+.|+..|.+ | .|-.|||+.+| + .+..+.|+-|.|-.
T Consensus 61 aLs~R~eV~klL~~----G-~syreIA~~~g-~----S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 61 SLSQRLQVAKMIKQ----G-YTYATIEQESG-A----STATISRVKRSLQW 101 (119)
T ss_dssp HHHHHHHHHHHHHH----T-CCHHHHHHHHC-C----CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc----C-CCHHHHHHHHC-C----CHHHHHHHHHHHhc
Confidence 44455888999986 3 99999999999 9 89999999998853
No 215
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=86.73 E-value=0.11 Score=33.58 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=37.5
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
++..|.+.|... +.+|..|||+.+| + ....+++-++.|...|++..
T Consensus 14 l~~~Il~~l~~~---~~ls~~eLa~~lg-v----Sr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 14 IDRNILNELQKD---GRISNVELSKRVG-L----SPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHHHC---SSCCTTGGGTSSS-C----CTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEE
Confidence 455667766652 6889999999999 9 78888889999999999873
No 216
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=86.49 E-value=0.8 Score=29.37 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=40.1
Q ss_pred HHHHHhChHHHHHhcCCCCCCCHHHHHhhC--------CCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 27 KAVINLGLFEIIAKAGPGAKLSASEIAAQL--------PATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 27 ~~av~LgIfd~l~~~g~~~~~t~~eLA~~~--------~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+--.++-|...|.+ +|++..||++.+ + + ++..|+++|+-|...|++....
T Consensus 39 ~g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~-i----s~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 39 RGYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYV-I----KETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GGTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCC-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccC-c----ChhHHHHHHHHHHHCCCEEEEE
Confidence 34456677777865 689999988887 5 6 7889999999999999998653
No 217
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=86.37 E-value=1.5 Score=25.94 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=30.1
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhcc
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASY 78 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~ 78 (89)
+.+.|.++-.+.++|+++||+.++ . .+..|.|+++.....
T Consensus 8 ~~~~i~~~~~~~~~~~~~lA~~~~-~----S~~~l~r~fk~~~G~ 47 (107)
T 2k9s_A 8 ACQYISDHLADSNFDIASVAQHVC-L----SPSRLSHLFRQQLGI 47 (107)
T ss_dssp HHHHHHHTSSCSSCCHHHHHHHTT-S----CHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhccCCCCHHHHHHHHC-C----CHHHHHHHHHHHHCc
Confidence 455566543126899999999999 9 999999998765543
No 218
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=86.35 E-value=0.61 Score=29.15 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=32.9
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|..+ |..+||+..+ + +...+++-++.|...|++....
T Consensus 35 G~~LPser~La~~~g-V----Sr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 35 GEKILSIREFASRIG-V----NPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp TCEECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCccHHHHHHHHC-C----CHHHHHHHHHHHHHCCcEEEEc
Confidence 4667 8999999999 9 9999999999999999997543
No 219
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=86.34 E-value=0.54 Score=30.90 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=28.8
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCc
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGI 80 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi 80 (89)
-|+|-++||..+| + .+..+.|+++.|...|+
T Consensus 177 l~~t~~~iA~~lg-~----sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 177 LPYDKMLIAGRLG-M----KPESLSRAFSRLKAAGV 207 (237)
T ss_dssp CCSCTHHHHHHTT-C----CHHHHHHHHHHHGGGTE
T ss_pred ecCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCe
Confidence 3678999999999 9 99999999999999996
No 220
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=86.30 E-value=1 Score=26.64 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=29.9
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhcc
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASY 78 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~ 78 (89)
+.+.|.++- ..++|+++||+.++ . .+..|.|+++.....
T Consensus 7 ~~~~i~~~~-~~~~~~~~lA~~~~-~----s~~~l~r~fk~~~G~ 45 (108)
T 3mn2_A 7 VEEYIEANW-MRPITIEKLTALTG-I----SSRGIFKAFQRSRGY 45 (108)
T ss_dssp HHHHHHHHT-TSCCCHHHHHHHHT-C----CHHHHHHHHHHHTSS
T ss_pred HHHHHHHcc-cCCCCHHHHHHHHC-C----CHHHHHHHHHHHhCc
Confidence 445565543 26899999999999 9 899999998866543
No 221
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=86.07 E-value=3.1 Score=25.26 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=40.8
Q ss_pred HHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCC--CCC-CCCc-chHHHHHHHHhccCceeeec
Q 045477 26 MKAVINLGLFEIIAKAGPGAKLSASEIAAQLPA--TKN-KDAP-TMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 26 L~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~--~~~-~~d~-~~l~RlLR~L~s~gi~~e~~ 85 (89)
++-..++-|...|.+ +|++..||++.+.. ... ..++ ..|++.|+-|...|++....
T Consensus 10 ~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~ 69 (118)
T 2esh_A 10 RGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEW 69 (118)
T ss_dssp HHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEE
T ss_pred ccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEe
Confidence 344466667777876 68999999998841 101 0167 89999999999999998654
No 222
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=86.01 E-value=0.75 Score=28.39 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
.|.++.|++..++ . ++..+.++++.|+..|.+.....
T Consensus 19 ~p~~~~~la~~~~-~----~~~~~~~~l~~l~~~G~l~~i~~ 55 (121)
T 2pjp_A 19 EPWWVRDLAKETG-T----DEQAMRLTLRQAAQQGIITAIVK 55 (121)
T ss_dssp SCEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEEET
T ss_pred CCCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEEecC
Confidence 5779999999999 9 99999999999999998876543
No 223
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=85.96 E-value=1.8 Score=26.65 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=40.9
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhC------CCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQL------PATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~------~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.++-.+++-|.-+|.+ +|++--||.+.+ + + ++..|+++|+-|...|+++...
T Consensus 9 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~-i----s~gtlY~~L~rLe~~GlI~~~~ 66 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTE-I----VEGTVYTILLRLEKNQWVIAEK 66 (116)
T ss_dssp HHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSS-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCC-C----CccHHHHHHHHHHHCCCEEEEe
Confidence 3444455566667775 699999999987 4 5 7889999999999999998653
No 224
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=85.70 E-value=1.1 Score=30.26 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=30.3
Q ss_pred CCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 47 LSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 47 ~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.+..+||+.++ . ++..+.|+++.|...|++....
T Consensus 25 ~~~~~La~~l~-v----s~~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 25 PLRARIAERLD-Q----SGPTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp CCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEECT
T ss_pred CcHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEeC
Confidence 34599999999 9 9999999999999999998654
No 225
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=85.42 E-value=1.2 Score=26.32 Aligned_cols=40 Identities=8% Similarity=0.088 Sum_probs=30.6
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccC
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYG 79 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~g 79 (89)
+.+.|.++- ..++|+++||+.++ + .+..|.|+++......
T Consensus 10 ~~~~i~~~~-~~~~~~~~lA~~~~-~----S~~~l~r~fk~~~G~s 49 (108)
T 3oou_A 10 VLSYITEHF-SEGMSLKTLGNDFH-I----NAVYLGQLFQKEMGEH 49 (108)
T ss_dssp HHHHHHHHT-TSCCCHHHHHHHHT-S----CHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHh-cCCCCHHHHHHHHC-c----CHHHHHHHHHHHHCcC
Confidence 445565543 26899999999999 9 9999999998765443
No 226
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=85.34 E-value=0.48 Score=23.39 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=23.5
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccC
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYG 79 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~g 79 (89)
++|..|||+.++ + ....++|.++.....|
T Consensus 21 g~s~~~IA~~lg-i----s~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 21 NVSLHEMSRKIS-R----SRHCIRVYLKDPVSYG 49 (51)
T ss_dssp TCCHHHHHHHHT-C----CHHHHHHHHHCSTTTT
T ss_pred CCCHHHHHHHHC-c----CHHHHHHHHhhHHhcC
Confidence 589999999999 9 8889999887544433
No 227
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=85.16 E-value=0.38 Score=31.97 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=37.6
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeeccc
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVDD 87 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~~ 87 (89)
|.+..+|+-+ +|+|-.||++..| . + ...++|.|...|++.+.++.
T Consensus 97 LEtLaiIay~---qPiTR~eI~~irG-v----~---~~~~v~~L~e~glI~e~g~~ 141 (162)
T 1t6s_A 97 LEVLAVVAWH---QPVTKGEIQQIRG-A----S---PDYSIDRLLARGLIEVRGRA 141 (162)
T ss_dssp HHHHHHHHHH---CSEEHHHHHHHHT-C----C---CCSHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHC-C----C---HHHHHHHHHHCCCEEEcccc
Confidence 4578888875 6999999999999 8 4 55689999999999987653
No 228
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=84.66 E-value=0.77 Score=30.66 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=39.3
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
-.|.++|. . |+.|..+||+.+| . .-....=+++.|...|++.+..
T Consensus 14 ~~ILE~Lk-~---G~~~t~~Iak~LG-l----Shg~aq~~Ly~LeREG~V~~Vk 58 (165)
T 2vxz_A 14 RDILALLA-D---GCKTTSLIQQRLG-L----SHGRAKALIYVLEKEGRVTRVA 58 (165)
T ss_dssp HHHHHHHT-T---CCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHH-h---CCccHHHHHHHhC-C----cHHHHHHHHHHHHhcCceEEEE
Confidence 35677787 3 7999999999999 9 8889999999999999999875
No 229
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=84.24 E-value=1.6 Score=31.47 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=39.4
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+-.|.+.|.+++ +.++|.+|||+.++ + ....+.+-++.|...|+.-+.
T Consensus 5 ~~~iL~~L~~~~-g~~~Sg~eLa~~lg-v----Sr~aV~k~i~~L~~~G~~i~~ 52 (323)
T 3rkx_A 5 SQDVLQLLYKNK-PNYISGQSIAESLN-I----SRTAVKKVIDQLKLEGCKIDS 52 (323)
T ss_dssp HHHHHHHHHHHT-TSCBCHHHHHHHHT-S----CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHC-C----CHHHHHHHHHHHHhcCCeEEE
Confidence 346788886543 26999999999999 9 999999999999999985543
No 230
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=83.92 E-value=1.4 Score=26.31 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=30.7
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccC
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYG 79 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~g 79 (89)
+.+.|.++- ..++|+++||+.++ . .+..|.|+++......
T Consensus 12 ~~~~i~~~~-~~~~~~~~lA~~~~-~----S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 12 AVSLMEANI-EEPLSTDDIAYYVG-V----SRRQLERLFKQYLGTV 51 (113)
T ss_dssp HHHHHHTCS-SSCCCHHHHHHHHT-S----CHHHHHHHHHHHTSSC
T ss_pred HHHHHHhhh-cCCCCHHHHHHHHC-c----CHHHHHHHHHHHHCcC
Confidence 445666552 26899999999999 9 9999999988765443
No 231
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=83.51 E-value=0.22 Score=35.99 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=0.0
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCcee
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
.|...|... +++|..|||+.++ + ++..++|.+..|...|+++
T Consensus 24 ~iL~~l~~~---~~~t~~eLa~~l~-v----s~~Tv~r~l~~Le~~Glv~ 65 (345)
T 2o0m_A 24 QILRNIYWM---QPIGRRSLSETMG-I----TERVLRTETDVLKQLNLIE 65 (345)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEE
Confidence 455666553 6899999999999 9 9999999999999999996
No 232
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=83.46 E-value=1.5 Score=29.67 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=31.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.+.+..+||+.++ . ++..+.++++.|...|++....
T Consensus 23 ~~~~~~~la~~l~-v----s~~tvs~~l~~Le~~GlV~r~~ 58 (226)
T 2qq9_A 23 VTPLRARIAERLE-Q----SGPTVSQTVARMERDGLVVVAS 58 (226)
T ss_dssp CCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEECT
T ss_pred CCccHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEeC
Confidence 3456799999999 9 9999999999999999998653
No 233
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=83.27 E-value=0.82 Score=30.47 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 43 PGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 43 ~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+|..+|-.+||+..| + ....++.-|+.|.+.|++.-...
T Consensus 32 pG~~L~e~~La~~lg-V----SRtpVREAL~~L~~eGlv~~~~~ 70 (218)
T 3sxy_A 32 LGEKLNVRELSEKLG-I----SFTPVRDALLQLATEGLVKVVPR 70 (218)
T ss_dssp TTCEECHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEEETT
T ss_pred CCCEeCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEeCC
Confidence 457899999999999 9 99999999999999999986543
No 234
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=83.07 E-value=0.98 Score=31.34 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=36.9
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.-|.-.|.+ ++.|..+||..++ . .+..+.-.|+.|+..|++...
T Consensus 168 ~~l~~~l~~----~~~t~~~la~~~~-l----~~~~V~~~l~~L~~~~~v~~~ 211 (232)
T 2qlz_A 168 AILHYLLLN----GRATVEELSDRLN-L----KEREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHHHHS----SEEEHHHHHHHHT-C----CHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHhc----CCCCHHHHHHHhC-c----CHHHHHHHHHHHHhcCCeEEe
Confidence 444445554 7999999999999 9 899999999999999999743
No 235
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=82.95 E-value=3.9 Score=25.27 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=44.2
Q ss_pred HHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 24 MTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 24 ~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
.-+...+.=.|.+.+...+ ..-+|.++....+. . |...+.||.++|...|++..
T Consensus 46 pe~Yl~iRN~iI~~yr~nP-~~yLT~t~~r~~l~-g----Dv~~i~RVh~FLe~wGLIN~ 99 (104)
T 2fq3_A 46 PEVYMRYRNFMVNSYRLNP-NEYFSVTTARRNVS-G----DAAALFRLHKFLTKWGLINY 99 (104)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TSCCCHHHHHHHSC-S----CHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHHHHHhCC-ceeeeHHHHHHHcc-c----cHHHHHHHHHHHHHcCeecc
Confidence 3455666667778887764 37899999999887 7 99999999999999999874
No 236
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=82.88 E-value=0.24 Score=32.38 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++|-++||..+| + .+..+.|+++.|...|+++..
T Consensus 164 ~~t~~~lA~~lg-~----sr~tvsR~l~~L~~~G~I~~~ 197 (213)
T 1o5l_A 164 PVTLEELSRLFG-C----ARPALSRVFQELEREGYIEKH 197 (213)
T ss_dssp ---------------------------------------
T ss_pred CCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCeEEEc
Confidence 789999999999 9 899999999999999998754
No 237
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=82.39 E-value=2.7 Score=29.10 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=39.0
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+.-.|.+.+.++|- .|-.+.||+..++ . ++..+..+|+.|+..|.+....
T Consensus 142 ~~~~i~~~~~~~g~-~pp~~~dl~~~l~-~----~~~~~~~~l~~l~~~g~lv~l~ 191 (258)
T 1lva_A 142 LLKDLEDKYRVSRW-QPPSFKEVAGSFN-L----DPSELEELLHYLVREGVLVKIN 191 (258)
T ss_dssp HHHHHHHHHHHHTT-SCCBHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHHHCCC-CCCCHHHHHhHhC-C----CHHHHHHHHHHHHHCCCEEEec
Confidence 33455666655432 4778999999999 9 9999999999999999877654
No 238
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=82.28 E-value=1.8 Score=26.48 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=37.5
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCC-----CCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLP-----ATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~-----~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+++-|.-+|.+ +|++--||++.+. .+ ++..|+++|+-|...|++....
T Consensus 10 l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~ 62 (115)
T 4esb_A 10 LEGCILYIISQ----EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTL 62 (115)
T ss_dssp HHHHHHHHHHH----SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEe
Confidence 34445666765 6899999998873 15 7889999999999999998653
No 239
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=81.91 E-value=0.32 Score=30.38 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=31.8
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|..+ |..+||+..+ + +...+++.++.|...|++....
T Consensus 32 G~~lPs~~~La~~~~-v----Sr~tvr~Al~~L~~~G~i~~~~ 69 (126)
T 3ic7_A 32 EGRIPSVREYASIVE-V----NANTVMRSYEYLQSQEVIYNKR 69 (126)
T ss_dssp TSEECCTTTTTTCC--C----CSGGGHHHHHHHHTTTSEEEET
T ss_pred CCcCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEEEc
Confidence 3567 8999999999 9 8999999999999999997654
No 240
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=81.88 E-value=2 Score=25.89 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=28.4
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHH
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGL 74 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~ 74 (89)
.+.+.|.++- ..++|+++||+.++ + .+..|.|+++.
T Consensus 11 ~~~~~i~~~~-~~~~~~~~lA~~~~-~----S~~~l~r~fk~ 46 (120)
T 3mkl_A 11 RVCTVINNNI-AHEWTLARIASELL-M----SPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHTST-TSCCCHHHHHHHTT-C----CHHHHHHHHHH
T ss_pred HHHHHHHHhc-cCCCCHHHHHHHHC-c----CHHHHHHHHHH
Confidence 3455666553 26899999999999 9 89999998875
No 241
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=80.89 E-value=1.3 Score=30.18 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 43 PGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 43 ~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+|..++-.+||+..| + ....++.-|+.|.+.|++.-...
T Consensus 48 pG~~L~e~~La~~lg-V----SRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 48 PGARLSEPDICAALD-V----SRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp TTCEECHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEETT
T ss_pred CcCEeCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEeCC
Confidence 457899999999999 9 89999999999999999986543
No 242
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=80.82 E-value=1.9 Score=26.38 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=30.3
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhcc
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASY 78 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~ 78 (89)
+.+.|.++- ..++|+++||+.++ . .+..|.|+++.....
T Consensus 16 ~~~~i~~~~-~~~~sl~~lA~~~~-~----S~~~l~r~fk~~~G~ 54 (129)
T 1bl0_A 16 ILDWIEDNL-ESPLSLEKVSERSG-Y----SKWHLQRMFKKETGH 54 (129)
T ss_dssp HHHHHHTTT-TSCCCCHHHHHHSS-S----CHHHHHHHHHHHHSS
T ss_pred HHHHHHHcc-CCCCCHHHHHHHHC-c----CHHHHHHHHHHHHCc
Confidence 455666542 26799999999999 9 999999998876544
No 243
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=80.81 E-value=1.2 Score=27.27 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=30.7
Q ss_pred HHhChHHHHHhcCC-CCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhc
Q 045477 30 INLGLFEIIAKAGP-GAKLSASEIAAQLPATKNKDAPTMLDRILGLLAS 77 (89)
Q Consensus 30 v~LgIfd~l~~~g~-~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s 77 (89)
.+-.|.+.|-++.. -..+|+.|||+.++ + .+..+.|+.|.|=-
T Consensus 22 ~e~~ia~yil~~~~~~~~~si~elA~~~~-v----S~aTv~Rf~kklG~ 65 (111)
T 2o3f_A 22 SERKLADYILAHPHXAIESTVNEISALAN-S----SDAAVIRLCXSLGL 65 (111)
T ss_dssp HHHHHHHHHHHCHHHHHTCCHHHHHHHTT-C----CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHChHHHHhcCHHHHHHHHC-C----CHHHHHHHHHHcCC
Confidence 35566776655320 02589999999999 9 88888888876643
No 244
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=79.15 E-value=1.9 Score=28.80 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=33.8
Q ss_pred CCCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 43 PGAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 43 ~~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+|..+ |-.+||+..| + ....++.-|+.|+..|++....
T Consensus 27 pG~~LPsE~eLa~~~g-V----SR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 27 PGTILPAERELSELIG-V----TRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp TTSBCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCcEEEec
Confidence 35788 8999999999 9 8999999999999999998553
No 245
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=78.96 E-value=1.4 Score=26.98 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=30.3
Q ss_pred HhChHHHHHhcCC-CCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHh
Q 045477 31 NLGLFEIIAKAGP-GAKLSASEIAAQLPATKNKDAPTMLDRILGLLA 76 (89)
Q Consensus 31 ~LgIfd~l~~~g~-~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~ 76 (89)
+-.|.+.|-++.. -..+|+.|||+.++ + .+..+.|+.|.|=
T Consensus 19 e~~ia~yil~~~~~~~~~si~elA~~~~-v----S~aTv~Rf~kkLG 60 (107)
T 3iwf_A 19 EKKIAQFILNYPHKVVNMTSQEIANQLE-T----SSTSIIRLSKKVT 60 (107)
T ss_dssp HHHHHHHHHHCHHHHTTCCHHHHHHHHT-S----CHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCHHHHHHCCHHHHHHHHC-C----CHHHHHHHHHHhC
Confidence 4566666654320 13689999999999 9 8889999988764
No 246
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=78.80 E-value=1.8 Score=28.78 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 43 PGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 43 ~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
+|..++-.+||+..| + ....++.-|+.|.+.|++.-...
T Consensus 36 pG~~L~E~~La~~lg-V----SRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 36 PGQRLVETDLVAHFG-V----GRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp TTCEECHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEECST
T ss_pred CCCccCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEecC
Confidence 457899999999999 9 99999999999999999986543
No 247
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=78.50 E-value=1.5 Score=21.79 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=19.5
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
+.|..+||..++ + ....++|.++
T Consensus 21 g~s~~~ia~~lg-v----s~~Tv~r~l~ 43 (52)
T 1jko_C 21 GHPRQQLAIIFG-I----GVSTLYRYFP 43 (52)
T ss_dssp TCCHHHHHHTTS-C----CHHHHHHHSC
T ss_pred CCCHHHHHHHHC-C----CHHHHHHHHH
Confidence 389999999999 9 8888887764
No 248
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=78.48 E-value=1.3 Score=24.68 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=10.7
Q ss_pred CHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 48 SASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 48 t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
|..|||+.+| + .+..+.|+|
T Consensus 2 T~~diA~~aG-V----S~sTVSrvL 21 (65)
T 1uxc_A 2 KLDEIARLAG-V----SRTTASYVI 21 (65)
T ss_dssp CHHHHHHHHT-S----CHHHHHHHH
T ss_pred CHHHHHHHHC-c----CHHHHHHHH
Confidence 4556666666 5 444444444
No 249
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=77.98 E-value=3 Score=28.41 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=33.1
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|..+ |-.|||+..+ + ....+++-++.|+..|++....
T Consensus 26 g~~lPse~~La~~~~-v----Sr~tvr~Al~~L~~~g~i~~~~ 63 (239)
T 3bwg_A 26 GDKLPVLETLMAQFE-V----SKSTITKSLELLEQKGAIFQVR 63 (239)
T ss_dssp TCBCCCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCcEEEeC
Confidence 4678 8999999999 9 8999999999999999997653
No 250
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.76 E-value=0.43 Score=29.96 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.-+|...|++++. + .-.+-+++||.|.+.|++..+
T Consensus 59 KlITpsvlseRlk-I----~gSLAR~aLreL~~kGlIk~V 93 (108)
T 3iz6_V 59 KQITPSVLSERLR-I----NGSLARQAIKDLESRGAIRVV 93 (108)
T ss_dssp SSEEEHHHHHHHH-T----CCHHHHHHHHHHHHHHTSCEE
T ss_pred eEEeHHHHHhhhc-c----cHHHHHHHHHHHHHCCCEEEE
Confidence 5789999999999 9 899999999999999999876
No 251
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=76.22 E-value=3.4 Score=28.15 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=31.8
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|..+ |-.|||++.+ + ....+++-++.|+..|++....
T Consensus 30 g~~lPse~~La~~~~-v----Sr~tvr~Al~~L~~~G~i~~~~ 67 (236)
T 3edp_A 30 GMLMPNETALQEIYS-S----SRTTIRRAVDLLVEEGLVVRKN 67 (236)
T ss_dssp CC--CCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEC
Confidence 4677 8999999999 9 9999999999999999998654
No 252
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=76.19 E-value=2.7 Score=28.79 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+|++..+||+.++ . .+..++..++.|...|++....
T Consensus 29 ~~V~~~~LA~~Lg-v----S~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 29 EPLGRKQISERLE-L----GEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCccHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEEeC
Confidence 6899999999999 9 8999999999999999997543
No 253
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=75.71 E-value=0.14 Score=37.28 Aligned_cols=47 Identities=13% Similarity=0.026 Sum_probs=38.8
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
+..+.-.|-.. +++|+.|||+.+| . ....+++.|+.|...|++....
T Consensus 20 ea~vY~~Ll~~---g~~t~~eia~~~g-v----~~~~Vy~~L~~L~~~GlV~~~~ 66 (342)
T 3qph_A 20 EILTYWTLLVY---GPSTAKEISTKSG-I----PYNRVYDTISSLKLRGFVTEIE 66 (342)
T ss_dssp TTSCSHHHHHH---HHHHHSCCSSSTT-S----SSCSCCHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEc
Confidence 44555566554 5899999999999 9 8889999999999999998653
No 254
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=75.54 E-value=3.4 Score=28.18 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=32.5
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
|..+ |-.|||+..+ + ....+++-++.|+..|++...
T Consensus 31 g~~lPse~~La~~~~-v----Sr~tvr~Al~~L~~~G~i~~~ 67 (243)
T 2wv0_A 31 DMPLPSEREYAEQFG-I----SRMTVRQALSNLVNEGLLYRL 67 (243)
T ss_dssp TCBCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEEe
Confidence 4677 8999999999 9 899999999999999998754
No 255
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=75.23 E-value=3.1 Score=32.43 Aligned_cols=47 Identities=6% Similarity=-0.002 Sum_probs=39.7
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhc-----cCceeeec
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLAS-----YGIVECSV 85 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s-----~gi~~e~~ 85 (89)
++.|...|.+. +.+|.++|++.++ . ++..+.|.|+.|+. .|+++..+
T Consensus 432 ~~~iL~~l~~~---~~it~~~la~~l~-~----s~~~~~~~L~~L~~~~~~~~glie~~g 483 (583)
T 3lmm_A 432 IAIVLYLLFQR---PFITIDVVARGLQ-S----GKEAARNALEAARQTTVAGAPLIIAHD 483 (583)
T ss_dssp HHHHHHHHHHS---SSBCHHHHHHHHT-S----CHHHHHHHHHHHHTCEETTEESEEEET
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHhC-c----CHHHHHHHHHHHHhhhccccceEEEeC
Confidence 45577778775 5899999999999 9 99999999999998 78887643
No 256
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=75.23 E-value=2.7 Score=28.28 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=32.2
Q ss_pred CCCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 43 PGAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 43 ~~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
+|..+ +-.+||+..| + ....++.-|+.|.+.|++.-
T Consensus 24 pG~~LpsE~~La~~lg-V----SRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 24 IGDHLPSERALSETLG-V----SRSSLREALRVLEALGTIST 60 (239)
T ss_dssp TTCBCCCHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEC
T ss_pred CCCcCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCeEe
Confidence 45788 5779999999 9 89999999999999999986
No 257
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=73.38 E-value=3 Score=30.45 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=36.0
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.|.+.+-.. .-.+.+++++.++ + .....+|.|+.|+..|++.+.+
T Consensus 301 ~ll~~l~~~---p~~t~~~~~~~~g-v----S~~Ta~r~L~~L~e~GiL~~~~ 345 (373)
T 2qc0_A 301 ELVQVIFEQ---PYCRIQNLVESGL-A----KRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp HHHHHHHHC---SEEEHHHHHHTSS-S----CHHHHHHHHHHHHHTTSCEEC-
T ss_pred HHHHHHHhC---CcccHHHHHHHhC-C----CHHHHHHHHHHHHHCCcEEEec
Confidence 345555542 2468999999999 9 8999999999999999999875
No 258
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=73.15 E-value=2.3 Score=22.01 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.9
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
+.|..|||+.++ + .+..++|.++
T Consensus 31 g~s~~eIA~~lg-i----s~~TV~~~l~ 53 (55)
T 2x48_A 31 GYTVQQIANALG-V----SERKVRRYLE 53 (55)
T ss_dssp TCCHHHHHHHHT-S----CHHHHHHHHT
T ss_pred CCCHHHHHHHHC-c----CHHHHHHHHH
Confidence 579999999999 9 8888888764
No 259
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=72.94 E-value=3.1 Score=30.59 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=35.7
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
|.+.+-+. ..+|++++++.++ + ......|.++.|+..|++++.+.
T Consensus 302 ll~~l~~~---p~~t~~~~~~~~~-~----S~~TA~r~L~~L~e~GiL~~~~~ 346 (373)
T 3eqx_A 302 LVQVIFEQ---PYCRIQNLVESGL-A----KRQTASVYLKQLCDIGVLEEVQS 346 (373)
T ss_dssp HHHHHHHC---SEEEHHHHHHTSS-S----CHHHHHHHHHHHHHTTSCEEC--
T ss_pred HHHHHHHC---CCccHHHHHHHhC-c----CHHHHHHHHHHHHHCCcEEEeCC
Confidence 45555543 3579999999999 9 78889999999999999998753
No 260
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=72.35 E-value=2.5 Score=25.34 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=25.8
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHH
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGL 74 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~ 74 (89)
.|.+.|.+. .+|+.|||+..| + .+..++|.|..
T Consensus 11 ~I~~~l~~~----~~ti~dlA~~~g-V----S~~TVsR~L~~ 43 (93)
T 2l0k_A 11 KIGKYIVET----KKTVRVIAKEFG-V----SKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHH----CCCHHHHHHHHT-S----CHHHHHHHHTT
T ss_pred HHHHHHHHc----CCCHHHHHHHHC-C----CHHHHHHHHcC
Confidence 356667663 389999999999 9 88888888753
No 261
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=71.86 E-value=8.8 Score=23.41 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=40.5
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCC-CCCCCcchHHHHHHHHhccCceeeec
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPAT-KNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~-~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.++-..++-|...|.+ +|++.-||.+.+... ...-.+..|++.|+.|...|++....
T Consensus 10 l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~ 67 (117)
T 3elk_A 10 ILHGLITLYILKELVK----RPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISES 67 (117)
T ss_dssp HHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEE
T ss_pred HHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 3445566667777876 689999998887410 00015679999999999999998654
No 262
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=71.78 E-value=0.8 Score=35.74 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=0.0
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
-.|.+.|.++ +.+|.+||++.++ . ++...+|+|+-|+..|++..++
T Consensus 519 ~~I~~~l~~~---g~it~~di~~l~~-l----s~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 519 NAAMLWLSEV---GDLATSDLMAMCG-V----SRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCcEEEeC
Confidence 3466777765 6899999999999 9 8888899999999999987654
No 263
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=70.25 E-value=5.5 Score=27.27 Aligned_cols=35 Identities=31% Similarity=0.318 Sum_probs=32.3
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
|..+ |-.|||+..+ + ....+++-|+.|+..|++..
T Consensus 33 g~~lPse~~La~~~~-v----Sr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 33 GDPFPAEREIAEQFE-V----ARETVRQALRELLIDGRVER 68 (248)
T ss_dssp TCBCCCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEe
Confidence 3678 9999999999 9 99999999999999999976
No 264
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=69.83 E-value=5.6 Score=21.07 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=26.3
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHH
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGL 74 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~ 74 (89)
.|+..+.+. . |..++|+.++ + .+..+.+.+|-
T Consensus 5 ~l~~~~~~~----g-s~~~~A~~lg-i----s~~~vs~~~~~ 36 (67)
T 2pij_A 5 PLSKYLEEH----G-TQSALAAALG-V----NQSAISQMVRA 36 (67)
T ss_dssp EHHHHHHHT----C-CHHHHHHHHT-S----CHHHHHHHHHT
T ss_pred HHHHHHHHc----C-CHHHHHHHHC-c----CHHHHHHHHcC
Confidence 567777763 4 9999999999 9 88899999874
No 265
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=69.29 E-value=5.1 Score=27.92 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=33.1
Q ss_pred CCCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 44 GAKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 44 ~~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|..+ |-.|||+..+ + ....+++-|+.|+..|++....
T Consensus 50 g~~lPse~~La~~~~-v----Sr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 50 HTRLPSQARIREEYG-V----SDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp TSBCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEECC
T ss_pred cCCCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEec
Confidence 4677 9999999999 9 9999999999999999987553
No 266
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=68.18 E-value=6.1 Score=20.53 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=19.8
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
..|+..+. .++|..|||+.++ + .+..+.
T Consensus 4 ~~vl~l~~-----~g~s~~eIA~~l~-i----s~~tV~ 31 (61)
T 2jpc_A 4 RQVLKLID-----EGYTNHGISEKLH-I----SIKTVE 31 (61)
T ss_dssp HHHHHHHH-----TSCCSHHHHHHTC-S----CHHHHH
T ss_pred HHHHHHHH-----cCCCHHHHHHHhC-C----CHHHHH
Confidence 34555543 3689999999999 9 665544
No 267
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=67.33 E-value=6.6 Score=20.25 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=17.7
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|..++|+.+| + ++..+.++.+
T Consensus 13 ~g~s~~~lA~~~g-i----s~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLE-V----SRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHT-S----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHc
Confidence 4688899999988 8 6666666553
No 268
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=66.86 E-value=4.4 Score=22.19 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=16.9
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.++|..|||+.++ + .+..+.+
T Consensus 29 ~~~s~~eIA~~l~-i----s~~tV~~ 49 (73)
T 1ku3_A 29 REHTLEEVGAYFG-V----TRERIRQ 49 (73)
T ss_dssp SCCCHHHHHHHHT-C----CHHHHHH
T ss_pred CCCCHHHHHHHHC-C----CHHHHHH
Confidence 5799999999999 9 6665443
No 269
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=66.15 E-value=8.5 Score=22.21 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 35 FEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 35 fd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.+.+.+++ ++.+++.++|..++ +. ....++-+.-+|.+.|+++..
T Consensus 20 i~l~~~~~-~~~i~l~~aa~~L~-v~---~kRRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 20 VSLLQEAK-DGVLDLKLAADTLA-VR---QKRRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp HHHHHHSS-TTEEEHHHHHHHTT-TC---CTHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHhCC-CCcCcHHHHHHHhC-Cc---cceehhhHHHHHhHhcceeec
Confidence 34444443 37899999999999 61 367899999999999999875
No 270
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=66.13 E-value=14 Score=21.75 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=35.3
Q ss_pred HHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCce
Q 045477 27 KAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIV 81 (89)
Q Consensus 27 ~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~ 81 (89)
+..++--|+.-....| ++++.++.-..++ . |+....||..+++..|.+
T Consensus 41 YL~~K~~Li~E~~k~g--~~lkk~da~~~~k-i----D~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 41 YLVLKEVMFRELLKTG--GNLSKSACRELLN-I----DPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp HHHHHHHHHHHHHHHS--SCCCHHHHHHHTT-S----CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhC--CCccHHHHHHHHc-c----cHHHHHHHHHHHHHcCCC
Confidence 3334444444444444 6799988888899 9 999999999999999864
No 271
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=65.90 E-value=7.1 Score=26.02 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=34.8
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCcee
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
-.|.+.|.+. +.+|++|||+.++ + .+..++|=+..|.--++..
T Consensus 15 ~~i~~~l~~~---~~~~~~~la~~~~-v----s~~TiRrDl~eL~~~~l~~ 57 (190)
T 4a0z_A 15 EAIRQQIDSN---PFITDHELSDLFQ-V----SIQTIRLDRTYLNIPELRK 57 (190)
T ss_dssp HHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHC---CCEeHHHHHHHHC-C----CHHHHHHHHHHhcCcchhh
Confidence 3467777774 5899999999999 9 8989999988888666543
No 272
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=65.56 E-value=12 Score=25.52 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=33.9
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHH-HHHhccCceeee
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRIL-GLLASYGIVECS 84 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlL-R~L~s~gi~~e~ 84 (89)
.++..+.+.-.+.+.+.+++|+.+| . +...++|.| +++...|++..+
T Consensus 251 ~~i~~~~~~~~g~~~~~~~~a~~lg-i----~~~tl~~~l~~~~i~~~li~~~ 298 (324)
T 1hqc_A 251 EILEVLILRFGGGPVGLATLATALS-E----DPGTLEEVHEPYLIRQGLLKRT 298 (324)
T ss_dssp HHHHHHHHHSCSSCCCHHHHHHHTT-S----CHHHHHHHTHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCchHHHHHHHhC-C----CHHHHHHHHhHHHHHhcchhcC
Confidence 3444444331136889999999999 9 888888855 558889998754
No 273
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=64.41 E-value=1.4 Score=27.92 Aligned_cols=27 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHh
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLA 76 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~ 76 (89)
-++|-++||..+| + .+..+.|+++-|.
T Consensus 167 ~~~t~~~iA~~lG-~----sretlsR~l~~l~ 193 (194)
T 3dn7_A 167 QRVPQYLLASYLG-F----TPEYLSEIRKKYI 193 (194)
T ss_dssp --------------------------------
T ss_pred HHCCHHHHHHHhC-C----CHHHHHHHHHhhc
Confidence 5789999999999 9 8999999998764
No 274
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=63.96 E-value=1.4 Score=30.91 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
++-.|++.|.....+.+++.++|++++++. ++.-++..++.|+..|.+=.+
T Consensus 208 ~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~----~~~~v~~al~~L~~eG~IYsT 258 (270)
T 2pi2_A 208 AQNQVLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYST 258 (270)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHhcCC----CHHHHHHHHHHHHhCCEEecc
Confidence 455788899865334789999999998327 778899999999999987443
No 275
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=63.95 E-value=7.2 Score=20.93 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=17.6
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|..|||+.+| + .+..+.|+.+
T Consensus 20 ~glsq~~lA~~~g-i----s~~~is~~e~ 43 (73)
T 3omt_A 20 KGKTNLWLTETLD-K----NKTTVSKWCT 43 (73)
T ss_dssp HTCCHHHHHHHTT-C----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHc
Confidence 4688999999998 8 6666665543
No 276
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=63.37 E-value=9 Score=26.95 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=36.7
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHH-HHhccCceeeec
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILG-LLASYGIVECSV 85 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR-~L~s~gi~~e~~ 85 (89)
.+...+.+.=.++|.+..+|++.++ . ++..+.++.. +|...|++..+.
T Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~~~-~----~~~t~~~~~~~~l~~~g~i~~~~ 311 (334)
T 1in4_A 263 KILKTIIEIYRGGPVGLNALAASLG-V----EADTLSEVYEPYLLQAGFLARTP 311 (334)
T ss_dssp HHHHHHHHHSTTCCBCHHHHHHHHT-S----CHHHHHHHTHHHHHHTTSEEEET
T ss_pred HHHHHHHHHhCCCcchHHHHHHHhC-C----CcchHHHHHHHHHHHcCCeeccc
Confidence 3555565541137999999999999 8 8878888877 899999987664
No 277
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=63.34 E-value=6.5 Score=23.95 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=25.8
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccC
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYG 79 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~g 79 (89)
.++|+++||..+| . ++..+.|+.+......
T Consensus 92 ~~~sl~~lA~~~g-~----S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 92 TPVTLEALADQVA-M----SPFHLHRLFKATTGMT 121 (133)
T ss_dssp SCCCHHHHHHHHT-S----CHHHHHHHHHHHTSSC
T ss_pred CCCCHHHHHHHHC-c----CHHHHHHHHHHHHCcC
Confidence 6899999999999 9 8999999998765443
No 278
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=63.23 E-value=11 Score=20.14 Aligned_cols=23 Identities=9% Similarity=0.223 Sum_probs=16.3
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..+||..+| + .+..+.++.
T Consensus 19 ~g~sq~~lA~~~g-i----s~~~i~~~e 41 (78)
T 3b7h_A 19 QNLTINRVATLAG-L----NQSTVNAMF 41 (78)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 4688888888888 7 555555544
No 279
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=63.04 E-value=6.7 Score=26.58 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=31.1
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccC
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYG 79 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~g 79 (89)
+.+.|.++- ..++|+++||+.++ . .+..|.|+++......
T Consensus 8 ~~~~i~~~~-~~~~~~~~la~~~~-~----s~~~l~r~f~~~~g~s 47 (292)
T 1d5y_A 8 LLIWLEGHL-DQPLSLDNVAAKAG-Y----SKWHLQRMFKDVTGHA 47 (292)
T ss_dssp HHHHHHTTS-SSSCCCHHHHTTTS-S----CHHHHHHHHHHHHSSC
T ss_pred HHHHHHhCC-CCCCCHHHHHHHHC-c----CHHHHHHHHHHHHCcC
Confidence 455666553 37899999999999 9 9999999988765443
No 280
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=62.87 E-value=4.2 Score=22.99 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=18.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
.++|..+||+++| + .+..|.+++
T Consensus 21 ~glT~~~LA~~~G-v----s~stls~~~ 43 (74)
T 1neq_A 21 RKLSLSALSRQFG-Y----APTTLANAL 43 (74)
T ss_dssp TSCCHHHHHHHHS-S----CHHHHHHTT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 5799999999999 8 776766553
No 281
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=62.86 E-value=5.7 Score=21.41 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=18.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
.++|..|||+.++ + .+..+.+.+
T Consensus 24 ~g~s~~eIA~~lg-i----s~~tV~~~~ 46 (68)
T 2p7v_B 24 TDYTLEEVGKQFD-V----TRERIRQIE 46 (68)
T ss_dssp SCCCHHHHHHHHT-C----CHHHHHHHH
T ss_pred CCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 5799999999999 9 666655433
No 282
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=61.98 E-value=13 Score=19.71 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=17.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..+||+.+| + .+..+.|+.
T Consensus 22 ~glsq~~lA~~~g-i----s~~~i~~~e 44 (77)
T 2b5a_A 22 KGVSQEELADLAG-L----HRTYISEVE 44 (77)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-C----CHHHHHHHH
Confidence 4688999999988 8 666666554
No 283
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=61.60 E-value=6.1 Score=22.50 Aligned_cols=21 Identities=5% Similarity=0.093 Sum_probs=17.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.++|..|||..++ + .+..+++
T Consensus 37 ~~~s~~EIA~~lg-i----s~~tV~~ 57 (87)
T 1tty_A 37 KPKTLEEVGQYFN-V----TRERIRQ 57 (87)
T ss_dssp SCCCHHHHHHHHT-C----CHHHHHH
T ss_pred CCCCHHHHHHHHC-C----CHHHHHH
Confidence 5799999999999 9 6665443
No 284
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=61.58 E-value=5.6 Score=27.57 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=27.2
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHh
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLA 76 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~ 76 (89)
.-|...|+ .| .|.|.++||+.+| . +..-+.+.|..|.
T Consensus 25 ~~llr~la-~G--rpv~~~~LA~~~g-~----~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 25 VPLLRELA-KG--RPVSRTTLAGILD-W----PAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHT-TT--SCBCHHHHHHHHT-C----CHHHHHHHHHHCT
T ss_pred HHHHHHHh-cC--CCCCHHHHHHHhC-c----CHHHHHHHHHhCC
Confidence 34556677 34 8999999999999 9 7766666665554
No 285
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=61.21 E-value=8 Score=20.68 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=21.1
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
+..|+..+. .+.|..|||+.++ + .+..+++.+
T Consensus 16 e~~il~~~~-----~g~s~~eIA~~l~-i----s~~tV~~~~ 47 (74)
T 1fse_A 16 EREVFELLV-----QDKTTKEIASELF-I----SEKTVRNHI 47 (74)
T ss_dssp HHHHHHHHT-----TTCCHHHHHHHHT-S----CHHHHHHHH
T ss_pred HHHHHHHHH-----cCCCHHHHHHHHC-C----CHHHHHHHH
Confidence 344555542 3579999999999 9 665544333
No 286
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=61.08 E-value=14 Score=22.77 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=38.0
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhC-----CCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQL-----PATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~-----~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
.++-.+++-|.-+|. +|++--||.+.+ + + ++..|+++|+-|...|++....
T Consensus 17 l~~g~l~~~IL~lL~-----~p~~GYei~~~l~~~~~~-i----s~gtlY~~L~rLe~~GlI~~~~ 72 (123)
T 3ri2_A 17 LRRGTLVMLVLSQLR-----EPAYGYALVKSLADHGIP-I----EANTLYPLMRRLESQGLLASEW 72 (123)
T ss_dssp HHHHHHHHHHHHHTT-----SCEEHHHHHHHHHHTTCC-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhCcHHHHHHHHHc-----CCCCHHHHHHHHHHhCCC-C----CcchHHHHHHHHHHCCCEEEEe
Confidence 344445555666664 377888887774 6 6 8889999999999999998653
No 287
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=61.04 E-value=3.5 Score=23.02 Aligned_cols=13 Identities=8% Similarity=0.156 Sum_probs=10.3
Q ss_pred CCCHHHHHhhCCCC
Q 045477 46 KLSASEIAAQLPAT 59 (89)
Q Consensus 46 ~~t~~eLA~~~~~~ 59 (89)
.+|..|||+..| +
T Consensus 9 ~~t~~diA~~aG-V 21 (67)
T 2l8n_A 9 AATMKDVALKAK-V 21 (67)
T ss_dssp CCCHHHHHHHTT-C
T ss_pred CCCHHHHHHHHC-C
Confidence 468888888888 7
No 288
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=60.63 E-value=13 Score=25.22 Aligned_cols=45 Identities=18% Similarity=0.052 Sum_probs=35.0
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhC-----CCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQL-----PATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~-----~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
...|+..++. ++.+..+|+..+ + . +...+.+.++.|...|++...
T Consensus 284 ~~~~l~~la~----g~~~~~~l~~~~~~~~~~-~----~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 284 YVDILRAIAL----GYNRWSLIRDYLAVKGTK-I----PEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHHT----TCCSHHHHHHHHHHTTCC-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHhCC-C----CHHHHHHHHHHHHhCCCEEec
Confidence 3456666665 357899998876 6 6 777899999999999999764
No 289
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=60.39 E-value=2.4 Score=29.05 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=4.6
Q ss_pred CCC-CHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKL-SASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~-t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
..+ |-.|||+..+ + ....+++-++.|...|++...
T Consensus 38 ~~lPse~~La~~~~-v----Sr~tvr~Al~~L~~~G~i~~~ 73 (247)
T 2ra5_A 38 SLLGNEIELAARLG-L----SRPTVRQAIQSLVDKGLLVRR 73 (247)
T ss_dssp -----------------------------------CEEEEE
T ss_pred CCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 567 8999999999 9 888999999999999998754
No 290
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=59.91 E-value=20 Score=21.79 Aligned_cols=14 Identities=43% Similarity=0.465 Sum_probs=12.7
Q ss_pred CCCCHHHHHhhCCCC
Q 045477 45 AKLSASEIAAQLPAT 59 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~ 59 (89)
..+|-.|||+.+| +
T Consensus 52 ~glTQ~eLA~~lG-i 65 (120)
T 2o38_A 52 ARLSQAAAAARLG-I 65 (120)
T ss_dssp TTCCHHHHHHHHT-C
T ss_pred cCCCHHHHHHHHC-c
Confidence 5799999999999 8
No 291
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=59.75 E-value=13 Score=20.58 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=18.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|-.|||+.+| + .+..+.|+.+
T Consensus 30 ~glsq~elA~~~g-i----s~~~is~~e~ 53 (83)
T 2a6c_A 30 SGLTQFKAAELLG-V----TQPRVSDLMR 53 (83)
T ss_dssp TTCCHHHHHHHHT-S----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHc
Confidence 5789999999999 8 6656655553
No 292
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=59.74 E-value=11 Score=20.06 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=17.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
.++|..++|+.+| + .+..+.|+.
T Consensus 22 ~g~s~~~lA~~~g-i----s~~~i~~~e 44 (76)
T 3bs3_A 22 KQRTNRWLAEQMG-K----SENTISRWC 44 (76)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 4688999999998 8 666665554
No 293
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=59.55 E-value=8 Score=22.45 Aligned_cols=24 Identities=4% Similarity=0.164 Sum_probs=18.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|..|||+.+| + .+..+.|+.+
T Consensus 36 ~glTq~eLA~~~G-i----S~~tis~iE~ 59 (88)
T 3t76_A 36 RDMKKGELREAVG-V----SKSTFAKLGK 59 (88)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHc
Confidence 5789999999999 8 6666666553
No 294
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=59.52 E-value=18 Score=23.41 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=27.6
Q ss_pred CCHHHHHhhCCCCCCCCC-cchHHHHHHHHhccCceee
Q 045477 47 LSASEIAAQLPATKNKDA-PTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 47 ~t~~eLA~~~~~~~~~~d-~~~l~RlLR~L~s~gi~~e 83 (89)
-|..|||+.+| . . +..+.+.++.|+..|.+..
T Consensus 26 ps~~elA~~lg-i----ss~~tv~~~~~~l~~~~~l~~ 58 (202)
T 1jhf_A 26 PTRAEIAQRLG-F----RSPNAAEEHLKALARKGVIEI 58 (202)
T ss_dssp CCHHHHHHHTT-C----SSHHHHHHHHHHHHHTTSEEE
T ss_pred ccHHHHHHHhC-C----CChHHHHHHHHHHHHCCCcee
Confidence 39999999999 9 7 7889999999998877653
No 295
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=59.09 E-value=11 Score=22.86 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=33.1
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCC------CCCCCCcchHHHHHHHHhccCceeeec
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPA------TKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~------~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|.-+|.+ +|++--||.+.+.. + ++..|+++|+-|...|++....
T Consensus 27 IL~lL~~----~~~~Gyei~~~l~~~~~~~~i----s~gtLY~~L~rLe~~GlI~~~~ 76 (115)
T 2dql_A 27 ILYVLLQ----GESYGTELIQQLETEHPTYRL----SDTVLYSAIKFLEDNRAITGYW 76 (115)
T ss_dssp HHHHHTT----SCBCHHHHHHHHHHHCTTEEC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh----CCCCHHHHHHHHHHHcCCCCC----CcchHHHHHHHHHHCCCEEEEe
Confidence 4445544 68888887776620 5 7889999999999999998653
No 296
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=58.53 E-value=11 Score=22.91 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=17.0
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCC
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.+.+.|- ..+|+.+||+..| +
T Consensus 17 ~l~~~~G~-~~~t~~~Ia~~ag-v 38 (191)
T 1sgm_A 17 RLSQLQGY-HATGLNQIVKESG-A 38 (191)
T ss_dssp HHHHHHCT-TTCCHHHHHHHHC-C
T ss_pred HHHHHcCc-cccCHHHHHHHHC-C
Confidence 34555552 5799999999999 9
No 297
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=57.43 E-value=12 Score=19.71 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=17.6
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
.++|..|+|..+| + .+..+.|+.
T Consensus 25 ~g~s~~~lA~~~g-i----s~~~i~~~e 47 (74)
T 1y7y_A 25 KGLSQETLAFLSG-L----DRSYVGGVE 47 (74)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 4689999999998 8 666666654
No 298
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=57.27 E-value=12 Score=19.55 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=15.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..+||+.+| + ++..+.|+.
T Consensus 15 ~glsq~~lA~~~g-i----s~~~i~~~e 37 (71)
T 1zug_A 15 LKMTQTELATKAG-V----KQQSIQLIE 37 (71)
T ss_dssp TTCCHHHHHHHHT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHhC-C----CHHHHHHHH
Confidence 4577888888887 7 555555554
No 299
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=57.10 E-value=6.5 Score=20.41 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=17.7
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|..++|..+| + .+..+.|+.+
T Consensus 17 ~g~s~~~lA~~~g-i----s~~~i~~~e~ 40 (68)
T 2r1j_L 17 LKIRQAALGKMVG-V----SNVAISQWER 40 (68)
T ss_dssp HTCCHHHHHHHHT-S----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHC-C----CHHHHHHHHc
Confidence 3588999999998 8 6666666543
No 300
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=56.59 E-value=12 Score=25.07 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=27.8
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHH
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGL 74 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~ 74 (89)
+.+.|.++- ..++|++++|+.++ . .+..|.|+.+.
T Consensus 174 ~~~~i~~~~-~~~~sl~~lA~~~~-~----S~~~l~r~fk~ 208 (276)
T 3gbg_A 174 ISCLVKSDI-TRNWRWADICGELR-T----NRMILKKELES 208 (276)
T ss_dssp HHHHHHHTT-TSCCCHHHHHHHHT-C----CHHHHHHHHHT
T ss_pred HHHHHHHhh-cCCCCHHHHHHHHC-c----CHHHHHHHHHH
Confidence 455566553 26899999999999 9 99999999874
No 301
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=56.13 E-value=13 Score=22.91 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=24.8
Q ss_pred HHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 23 HMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 23 ~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
...|.+|.+ .+.+.|- ...|+.+||++.| + ....+++
T Consensus 10 ~~Il~aA~~-----lf~~~G~-~~~t~~~IA~~ag-v----s~~tlY~ 46 (192)
T 2zcm_A 10 DKIIDNAIT-----LFSEKGY-DGTTLDDISKSVN-I----KKASLYY 46 (192)
T ss_dssp HHHHHHHHH-----HHHHHCT-TTCCHHHHHHHTT-C----CHHHHHH
T ss_pred HHHHHHHHH-----HHHHcCc-ccCCHHHHHHHhC-C----ChHHHHH
Confidence 344555544 3555553 5799999999999 9 6655543
No 302
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=56.02 E-value=13 Score=22.84 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+.+||+..| + .+..+++
T Consensus 26 l~~~~G~-~~~ti~~Ia~~ag-v----s~~t~Y~ 53 (203)
T 3f1b_A 26 VFSDRGF-HETSMDAIAAKAE-I----SKPMLYL 53 (203)
T ss_dssp HHHHHCT-TTCCHHHHHHHTT-S----CHHHHHH
T ss_pred HHHHcCc-ccccHHHHHHHhC-C----chHHHHH
Confidence 4565552 5799999999999 9 6655544
No 303
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=55.90 E-value=6.8 Score=20.86 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=17.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|..+||+.+| + ++..+.|+.+
T Consensus 17 ~gls~~~lA~~~g-i----s~~~i~~~e~ 40 (76)
T 1adr_A 17 LKIRQAALGKMVG-V----SNVAISQWER 40 (76)
T ss_dssp HTCCHHHHHHHHT-S----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHc
Confidence 3588899999988 8 6666665543
No 304
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=55.80 E-value=19 Score=19.52 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=17.3
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..+||+.+| + .+..+.|+.
T Consensus 23 ~glsq~~lA~~~g-i----s~~~i~~~e 45 (82)
T 3s8q_A 23 KGMTQEDLAYKSN-L----DRTYISGIE 45 (82)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHH
T ss_pred cCCCHHHHHHHhC-c----CHHHHHHHH
Confidence 4689999999998 8 666666554
No 305
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=55.74 E-value=9.5 Score=21.88 Aligned_cols=30 Identities=20% Similarity=0.046 Sum_probs=25.2
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCc
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGI 80 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi 80 (89)
+.|+.+||...| + .+..|+|-++..-..|.
T Consensus 23 g~s~~~ia~~~g-I----s~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 23 GASLQQIANDLG-I----NRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHT-S----CHHHHHHHHHHHCCCST
T ss_pred CChHHHHHHHHC-c----CHHHHHHHHHHHhhcCc
Confidence 579999999999 9 88899999887766554
No 306
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=55.64 E-value=11 Score=22.80 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=20.3
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+.+||+..| + .+..+++
T Consensus 20 l~~~~G~-~~~ti~~Ia~~ag-v----s~~t~Y~ 47 (188)
T 3qkx_A 20 LMAREGL-NQLSMLKLAKEAN-V----AAGTIYL 47 (188)
T ss_dssp HHHHSCS-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHhcCc-ccCCHHHHHHHhC-C----CcchHHH
Confidence 4555553 5799999999999 9 6655443
No 307
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=55.44 E-value=13 Score=19.21 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=15.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..++|..+| + ++..+.++.
T Consensus 13 ~glsq~~lA~~~g-i----s~~~i~~~e 35 (69)
T 1r69_A 13 LGLNQAELAQKVG-T----TQQSIEQLE 35 (69)
T ss_dssp TTCCHHHHHHHHT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 3577777777777 7 555555554
No 308
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=54.98 E-value=22 Score=21.02 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=29.6
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccC
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYG 79 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~g 79 (89)
.|+.+|.+. +++|.+||++.++ . +..-+..-+-=|+.-+
T Consensus 12 ~VW~~L~~~---~~~s~~el~k~t~-l----~d~el~lAIGWLaREd 50 (82)
T 2l02_A 12 KVWHALNEA---DGISIPELARKVN-L----SVESTALAVGWLAREN 50 (82)
T ss_dssp HHHHHHHHC---CSBCHHHHHHHHT-C----CHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcc---CCCCHHHHHHHhC-C----CHHHHHHHHHHHhccC
Confidence 478888874 6999999999999 8 7766666666565433
No 309
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.78 E-value=9.2 Score=20.17 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=16.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.++|..|||+.+| + .+..+++
T Consensus 30 ~g~s~~eIA~~lg-i----s~~tv~~ 50 (70)
T 2o8x_A 30 LGLSYADAAAVCG-C----PVGTIRS 50 (70)
T ss_dssp SCCCHHHHHHHHT-S----CHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHH
Confidence 4689999999999 9 6665443
No 310
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=54.72 E-value=22 Score=20.52 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=36.6
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcch-HHHHHHHHhccCceee
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTM-LDRILGLLASYGIVEC 83 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~-l~RlLR~L~s~gi~~e 83 (89)
+-.|.+.|..+ ||-++--||+.+| . .... +.|-|=.|-..|++..
T Consensus 12 ee~I~~fL~~~---Gp~~AL~IAK~LG-l----ktAK~VNp~LY~m~~~~lL~~ 57 (72)
T 3eyi_A 12 EEDIYRFLKDN---GPQRALVIAQALG-M----RTAKDVNRDLYRMKSRHLLDM 57 (72)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTT-C----CSGGGTHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc---CCchHHHHHHHhC-c----chhhhcCHHHHHHHHccCcCC
Confidence 56788999876 6999999999999 8 4444 7888888888888853
No 311
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=54.60 E-value=12 Score=24.01 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=33.0
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhC-------CCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQL-------PATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~-------~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|.-+|.+ +|++--||.+.+ + + ++..|+++|+-|...|++....
T Consensus 49 IL~lL~~----~p~~GYeI~k~l~~~~~~~~-i----s~gtLYp~L~rLE~~GlI~~~~ 98 (148)
T 2zfw_A 49 VLAVLRH----EDSYGTELIQHLETHWPNYR-L----SDTVLYTALKFLEDEQIISGYW 98 (148)
T ss_dssp HHHHHTT----CCEEHHHHHHHHHHHCTTEE-C----CSHHHHHHHHHHHHTSSEEEEC
T ss_pred HHHHHHh----CCCcHHHHHHHHHHHcCCCC-C----ChhHHHHHHHHHHHCCCEEEEe
Confidence 3444543 688888887766 3 5 7789999999999999998653
No 312
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=54.55 E-value=8 Score=21.38 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=18.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|..|||+.++ + ....+.++.+
T Consensus 22 ~gltq~elA~~~g-i----s~~~is~~E~ 45 (78)
T 3qq6_A 22 KGYSLSELAEKAG-V----AKSYLSSIER 45 (78)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHc
Confidence 5689999999998 8 6666666654
No 313
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=54.34 E-value=15 Score=21.21 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=21.9
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
-+..|+..+.+ ++|..|||..++ + .+..+.
T Consensus 33 rE~~Vl~l~~~-----G~s~~eIA~~L~-i----S~~TV~ 62 (90)
T 3ulq_B 33 RECLILQEVEK-----GFTNQEIADALH-L----SKRSIE 62 (90)
T ss_dssp HHHHHHHHHHT-----TCCHHHHHHHHT-C----CHHHHH
T ss_pred HHHHHHHHHHc-----CCCHHHHHHHHC-c----CHHHHH
Confidence 35566766763 589999999999 8 665544
No 314
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=54.22 E-value=12 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.8
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
+.|..+||..++ + ....++|+++
T Consensus 158 G~s~~~Ia~~l~-i----s~~tv~r~l~ 180 (183)
T 1gdt_A 158 GLGASHISKTMN-I----ARSTVYKVIN 180 (183)
T ss_dssp TCCHHHHHHHHT-C----CHHHHHHHHH
T ss_pred CCCHHHHHHHHC-c----CHHHHHHHHh
Confidence 479999999999 9 7888888875
No 315
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=54.20 E-value=12 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=20.5
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+.+||++.| + ....+++
T Consensus 20 l~~~~G~-~~~t~~~IA~~Ag-v----s~~tly~ 47 (194)
T 3dpj_A 20 LFYRQGF-AQTSFVDISAAVG-I----SRGNFYY 47 (194)
T ss_dssp HHHHHCT-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHcCc-ccCCHHHHHHHHC-C----ChHHHHH
Confidence 3555553 5799999999999 9 6655554
No 316
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=54.14 E-value=13 Score=22.65 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=20.9
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.+.|- ..+|+.+||++.| + .+..+++
T Consensus 20 ~l~~~~G~-~~~tv~~Ia~~ag-v----s~~t~Y~ 48 (195)
T 3ppb_A 20 QLFVSQGF-HGTSTATIAREAG-V----ATGTLFH 48 (195)
T ss_dssp HHHHHTCS-TTSCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHhcCc-ccCCHHHHHHHhC-C----ChhHHHH
Confidence 34566542 6799999999999 9 6665543
No 317
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=53.87 E-value=18 Score=24.71 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=31.9
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+++|+.+|+...+ . .+....-.|..+...|++=.+
T Consensus 167 g~vt~~~la~~l~-w----s~~~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 167 GSLTSEEFAKLVG-M----SVLLAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHhC-C----CHHHHHHHHHHHHHcCCEEEE
Confidence 6999999999999 9 899999999999999988655
No 318
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=53.68 E-value=7.7 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=16.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..+||+.+| + ....+.++.
T Consensus 14 ~glsq~~lA~~~g-i----s~~~i~~~e 36 (77)
T 2k9q_A 14 LSLTAKSVAEEMG-I----SRQQLCNIE 36 (77)
T ss_dssp HTCCHHHHHHHHT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHhC-C----CHHHHHHHH
Confidence 4688899999988 8 555555544
No 319
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=53.61 E-value=30 Score=24.96 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=46.1
Q ss_pred HHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCc--chHHHHHHHHhccCceeeec
Q 045477 13 AFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAP--TMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 13 ~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~--~~l~RlLR~L~s~gi~~e~~ 85 (89)
+.-++.-|....=++..++ -+++.+.+.+ +|.|..||-..-. . .. .-|.-+|+.|+..|++++..
T Consensus 207 lllla~Ef~I~sk~~~~~~-~Ll~~m~ek~--~~wS~~Ei~~~p~-~----~~~~idle~iL~~Lv~k~lI~~~~ 273 (290)
T 3c18_A 207 LALIGLEHLLQSKVLSGGK-YLFEVMRERD--RPWTMHELMEESR-L----TELKVDLGSLVDFFIRKGLIRISY 273 (290)
T ss_dssp HHHHHHHHHHHHTHHHHHH-HHHHHHTTSS--SCEEHHHHHHCGG-G----GGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhcC--CCCCHHHHhcCcc-c----ccccCCHHHHHHHHHHcCCeEEec
Confidence 3333444554444555555 4789998765 8999999988755 4 22 24889999999999999764
No 320
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=53.60 E-value=20 Score=20.80 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=18.7
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|-.|||+.+| + .+..+.|+.+
T Consensus 40 ~gltq~elA~~~g-i----s~~~is~iE~ 63 (99)
T 3g5g_A 40 KGMTQEDLAYKSN-L----DRTYISGIER 63 (99)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHC
Confidence 5789999999999 8 6766666553
No 321
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=53.10 E-value=7 Score=25.96 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.9
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHh
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLA 76 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~ 76 (89)
+.|.++||+++| . ++..+.|.||++.
T Consensus 52 G~t~eeiA~~lG-~----s~s~V~~~LrLl~ 77 (178)
T 1r71_A 52 GKKKGDIAKEIG-K----SPAFITQHVTLLD 77 (178)
T ss_dssp TCCHHHHHHHHT-C----CHHHHHHHHGGGS
T ss_pred CCCHHHHHHHHC-c----CHHHHHHHHHHHc
Confidence 479999999999 9 8889999998873
No 322
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=53.10 E-value=11 Score=21.84 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=26.6
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCcee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
+.|..+||..++ + ++..++|.++.....|.+.
T Consensus 33 g~s~~~ia~~lg-i----s~~Tv~~w~~~~~~~g~~~ 64 (128)
T 1pdn_C 33 GIRPCVISRQLR-V----SHGCVSKILNRYQETGSIR 64 (128)
T ss_dssp TCCHHHHHHHHT-C----CHHHHHHHHHHHHHHCCSS
T ss_pred CCCHHHHHHHHC-c----CHHHHHHHHHHHHhhCCcc
Confidence 479999999999 9 8999999998876666543
No 323
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=52.99 E-value=16 Score=22.31 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=19.6
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.+.+.|- ..+|+.+||++.| + ....++
T Consensus 14 l~~~~G~-~~~ti~~Ia~~ag-v----s~~t~Y 40 (194)
T 3bqz_B 14 LFIKNGY-NATTTGEIVKLSE-S----SKGNLY 40 (194)
T ss_dssp HHHHHTT-TTCCHHHHHHHTT-C----CHHHHH
T ss_pred HHHHcCC-ccCCHHHHHHHhC-C----CchhHH
Confidence 3555542 5799999999999 9 665544
No 324
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=52.82 E-value=13 Score=26.73 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 19 GSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 19 ~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+||....++.. .+.+ +.+|+++|++.|+ . ...-|+..|..+|++...
T Consensus 192 ~YW~~~i~~~L---------~~~~--~~isi~~is~~Tg-i-------~~~Dii~tL~~l~~l~~~ 238 (276)
T 3to7_A 192 AYWSDTLITLL---------VEHQ--KEITIDEISSMTS-M-------TTTDILHTAKTLNILRYY 238 (276)
T ss_dssp HHHHHHHHHHH---------HHTC--SEEEHHHHHHHHC-B-------CHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHH---------HhcC--CceeHHHHHHHhC-C-------CHHHHHHHHHHCCCEEEe
Confidence 56655555543 3333 6899999999999 8 445577888888887643
No 325
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=52.72 E-value=12 Score=21.19 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=16.8
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..|||+.+| + .+..+.|+.
T Consensus 21 ~glsq~~lA~~~g-i----s~~~is~~e 43 (94)
T 2kpj_A 21 SEKTQLEIAKSIG-V----SPQTFNTWC 43 (94)
T ss_dssp SSSCHHHHHHHHT-C----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 5689999999988 8 555555544
No 326
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=52.68 E-value=18 Score=19.79 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=18.6
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|-.+||+.+| + .+..+.|+.+
T Consensus 24 ~glsq~~lA~~~g-i----s~~~i~~~e~ 47 (88)
T 2wiu_B 24 NGWTQSELAKKIG-I----KQATISNFEN 47 (88)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHHH
T ss_pred cCCCHHHHHHHhC-C----CHHHHHHHHc
Confidence 4689999999999 8 6666666554
No 327
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=52.46 E-value=6.7 Score=24.32 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=20.4
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCC
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.-.|++.|.+ +|+|+.||++.++ .
T Consensus 12 ~Re~Ii~lL~~----~plta~ei~~~l~-i 36 (105)
T 2gmg_A 12 RREKIIELLLE----GDYSPSELARILD-M 36 (105)
T ss_dssp HHHHHHHHTTT----SCBCTTHHHHSSC-C
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHhC-C
Confidence 34567888863 7999999999999 8
No 328
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=52.39 E-value=10 Score=20.72 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=16.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|-.|+|+.+| + .+..+.++.
T Consensus 24 ~gltq~~lA~~~g-v----s~~~is~~e 46 (80)
T 3kz3_A 24 LGLSYESVADKMG-M----GQSAVAALF 46 (80)
T ss_dssp HTCCHHHHHHHTT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHhC-c----CHHHHHHHH
Confidence 4678888888888 7 555555544
No 329
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=52.15 E-value=16 Score=22.62 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=20.5
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+.+||++.| + ....+++
T Consensus 30 l~~~~G~-~~~s~~~Ia~~ag-v----s~~t~Y~ 57 (212)
T 1pb6_A 30 TFSQFGF-HGTRLEQIAELAG-V----SKTNLLY 57 (212)
T ss_dssp HHHHHCT-TTCCHHHHHHHTT-S----CHHHHHH
T ss_pred HHHHcCc-chhhHHHHHHHHC-C----ChhHHHH
Confidence 3555542 5799999999999 9 6665554
No 330
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=52.12 E-value=8.4 Score=21.09 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=17.9
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|-.|+|+.+| + ++..+.|+.+
T Consensus 26 ~gltq~elA~~~g-i----s~~~is~~e~ 49 (83)
T 3f6w_A 26 AGITQKELAARLG-R----PQSFVSKTEN 49 (83)
T ss_dssp HTCCHHHHHHHHT-S----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHC
Confidence 4689999999999 8 6666665543
No 331
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=51.65 E-value=7.8 Score=21.90 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGL 74 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~ 74 (89)
.-+|++|.|+.++ + ....++||.+-
T Consensus 15 ~~LTi~EaAeylg-I----g~~~l~~L~~~ 39 (70)
T 1y6u_A 15 YTLTIEEASKYFR-I----GENKLRRLAEE 39 (70)
T ss_dssp SEEEHHHHHHHTC-S----CHHHHHHHHHH
T ss_pred ceeCHHHHHHHHC-c----CHHHHHHHHHc
Confidence 4579999999999 9 88888888753
No 332
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=51.15 E-value=14 Score=20.73 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.++|..|||+.++ + .+..+.
T Consensus 35 ~g~s~~eIA~~l~-i----s~~tV~ 54 (82)
T 1je8_A 35 QGLPNKMIARRLD-I----TESTVK 54 (82)
T ss_dssp TTCCHHHHHHHHT-S----CHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHH
Confidence 3689999999999 9 665544
No 333
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=51.05 E-value=18 Score=26.08 Aligned_cols=35 Identities=6% Similarity=-0.072 Sum_probs=32.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
|..|.+||.+.++ . ++..+..++..|...|++.+.
T Consensus 50 G~~tl~ei~~~l~-~----~~~~v~~~i~~L~~~g~l~~~ 84 (353)
T 3h5n_A 50 TPSSYTAALETAN-I----PEKDFSNCFRFLKENFFIIPG 84 (353)
T ss_dssp SCBCHHHHHTTCC-S----CHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCCHHHHHHHcC-C----CHHHHHHHHHHHHHCCCEeeC
Confidence 7899999999999 8 888999999999999988754
No 334
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=50.93 E-value=17 Score=22.48 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=20.0
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+.+||+..| + ....+++
T Consensus 29 l~~~~G~-~~~ti~~Ia~~ag-v----s~~t~Y~ 56 (207)
T 2rae_A 29 LFTEQGF-DATSVDEVAEASG-I----ARRTLFR 56 (207)
T ss_dssp HHHHHCT-TTSCHHHHHHHTT-S----CHHHHHH
T ss_pred HHHHcCc-ccCCHHHHHHHhC-C----CcchHhh
Confidence 4566552 5799999999999 9 5554443
No 335
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=50.48 E-value=12 Score=22.30 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=16.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.++|..|||+.+| + .+..+.
T Consensus 38 e~~s~~EIA~~lg-i----S~~tVr 57 (99)
T 3t72_q 38 TDYTLEEVGKQFD-V----TRERIR 57 (99)
T ss_pred CCCCHHHHHHHHC-c----CHHHHH
Confidence 6899999999999 9 665544
No 336
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=50.30 E-value=10 Score=25.58 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=34.9
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCC----CCCCcchHHHHHHHHhccCceeeec
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATK----NKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~----~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
-|.-.|.+ +|++--||++.+. -. -+..+..|++.|+-|...|+++...
T Consensus 40 ~IL~lL~~----~p~~GYeL~~~l~-~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~ 91 (204)
T 3l9f_A 40 IILGILSK----KERSGYEINDILQ-NQLSYFYDGTYGMIYPTLRKLEKDGKITKEV 91 (204)
T ss_dssp HHHHHTSS----CCEEHHHHHHHHH-HTSTTTEECCTTCHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHc----CCCCHHHHHHHHH-HHhCCccCCCcchHHHHHHHHHHCCCeEEEe
Confidence 34445543 7999999999873 10 0116779999999999999998653
No 337
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=50.24 E-value=15 Score=22.71 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=20.3
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.+.|- ..+|+++||++.| + ....++
T Consensus 15 ~l~~~~G~-~~~t~~~Ia~~ag-v----s~~t~Y 42 (185)
T 2yve_A 15 DYIGEYSL-ETLSYDSLAEATG-L----SKSGLI 42 (185)
T ss_dssp HHHHHSCS-TTCCHHHHHHHHC-C----CHHHHH
T ss_pred HHHHHcCh-hhccHHHHHHHhC-C----ChHHHH
Confidence 34666553 5799999999999 9 665544
No 338
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.16 E-value=12 Score=23.21 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=39.3
Q ss_pred HHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCC-CCCCCCcchHHHHHHHHhccCceeee
Q 045477 26 MKAVINLGLFEIIAKAGPGAKLSASEIAAQLPA-TKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 26 L~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~-~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
+...+.=.|.+.+.... ..-+|..+.-..+.+ . |...+.||.++|...|++...
T Consensus 49 ~Yl~iRN~iI~~yr~np-~~yLT~t~~rr~L~~~g----Dv~~i~RVh~FLe~wGLIN~~ 103 (111)
T 2dce_A 49 RYLKIRNYILDQWEICK-PKYLNKTSVRPGLKNCG----DVNCIGRIHTYLELIGAINFG 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCCGGGTTTTTSSSS----CHHHHHHHHHHHHHHSSSSCS
T ss_pred HHHHHHHHHHHHHHhCC-cceeeHHHHHHhccccc----CHHHHHHHHHHHHHcCeeecC
Confidence 44455556677777654 367888877766620 3 899999999999999998743
No 339
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=50.16 E-value=15 Score=22.66 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=20.8
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+++||+..| + ....+++
T Consensus 24 l~~~~G~-~~~t~~~Ia~~ag-v----s~~t~Y~ 51 (202)
T 3lwj_A 24 LFIEKGY-YNTSIRDIIALSE-V----GTGTFYN 51 (202)
T ss_dssp HHHHHCT-TTCCHHHHHHHHC-S----CHHHHHH
T ss_pred HHHHcCc-ccCCHHHHHHHhC-C----CchhHHH
Confidence 3555542 5799999999999 9 7766654
No 340
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=50.05 E-value=21 Score=22.43 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=19.5
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.+.+.|- ..+|+.+||+..| + ....++
T Consensus 40 lf~~~G~-~~~tv~~IA~~ag-v----s~~t~Y 66 (215)
T 2qko_A 40 VLAREGA-RGLTFRAVDVEAN-V----PKGTAS 66 (215)
T ss_dssp HHHHTCT-TTCCHHHHHHHSS-S----TTTCHH
T ss_pred HHHHhCh-hhccHHHHHHHcC-C----CcchHH
Confidence 4566553 5799999999999 9 554444
No 341
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=49.93 E-value=66 Score=24.46 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 9 NFAYAFEVTMGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 9 ~~~~~~~l~~~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
-+..+.+-.||.... .|++.|-.. |+.|+.+|+..++ . ++..+..-|=.|..+|++....
T Consensus 8 L~~~li~~~FG~~~~---------~V~~~Ll~~---G~ltL~~I~~~t~-L----~~~~Vk~~L~vLIQh~lV~~~~ 67 (534)
T 2xub_A 8 LCSLLLQEHFGEIVE---------KIGVHLIRT---GSQPLRVIAHDTG-T----SLDQVKKALCVLVQHNLVSYQV 67 (534)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHH---CSEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcChHHH---------HHHHHHHhc---CCcCHHHHHHHhC-C----CHHHHHHHHHHHHhcCCeeEEe
Confidence 344455555555543 457777765 6999999999999 9 8899999999999999987543
No 342
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=49.93 E-value=15 Score=22.73 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=20.7
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.+.|- ..+|+.+||++.| + ....+++
T Consensus 25 ~l~~~~G~-~~~ti~~Ia~~ag-v----s~~t~Y~ 53 (220)
T 3lhq_A 25 RLFSQQGV-SATSLAEIANAAG-V----TRGAIYW 53 (220)
T ss_dssp HHHHHHCS-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHHcCc-ccCCHHHHHHHhC-C----Cceeehh
Confidence 34555553 5799999999999 9 6655543
No 343
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=49.71 E-value=12 Score=21.36 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.++|..|||+.++ + .+..+.
T Consensus 52 ~g~s~~eIA~~lg-i----s~~tV~ 71 (92)
T 3hug_A 52 RGWSTAQIATDLG-I----AEGTVK 71 (92)
T ss_dssp SCCCHHHHHHHHT-S----CHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHH
Confidence 5799999999999 9 665543
No 344
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=49.24 E-value=19 Score=19.43 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=17.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRI 71 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~Rl 71 (89)
.++|..|||+.++ + .+..+++.
T Consensus 30 ~g~s~~eIA~~l~-i----s~~tV~~~ 51 (79)
T 1x3u_A 30 AGLPNKSIAYDLD-I----SPRTVEVH 51 (79)
T ss_dssp TTCCHHHHHHHTT-S----CHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHH
Confidence 4689999999999 9 66655433
No 345
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=49.11 E-value=12 Score=21.12 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=18.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|..+||+.+| + .+..+.++.+
T Consensus 20 ~gltq~~lA~~~g-i----s~~~is~~e~ 43 (94)
T 2ict_A 20 LNVSLREFARAME-I----APSTASRLLT 43 (94)
T ss_dssp HTCCHHHHHHHHT-C----CHHHHHHHHH
T ss_pred cCCCHHHHHHHhC-C----CHHHHHHHHc
Confidence 3588999999999 8 6766666654
No 346
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=49.05 E-value=40 Score=19.99 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=37.3
Q ss_pred HHHhChHHHHHhcCCCCCCCHHHHHhhCCCCC--CCCCcchHHHHHHHHhccCcee
Q 045477 29 VINLGLFEIIAKAGPGAKLSASEIAAQLPATK--NKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 29 av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~--~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
.++-.|.+.+++.++++.+..+|+|..++ .. .+ --..+++.-+.|+..|-+.
T Consensus 7 ~le~~Il~ll~~R~~~kTicPSEvARal~-~~~Wr~-lM~~vR~~A~~La~~G~v~ 60 (85)
T 2ns0_A 7 ELEECIRALLDARADSASICPSDVARAVA-PDDWRP-LMEPVREAAGRLADAGEVE 60 (85)
T ss_dssp HHHHHHHHHHHHSCTTCCBCHHHHHHHHC-TTSCGG-GHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhCCCCCcCHHHHHHHhC-chhHHH-HhHHHHHHHHHHHHCCcEE
Confidence 34556788898887667899999999998 41 00 0123778888888888765
No 347
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=49.03 E-value=10 Score=20.57 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=16.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
.++|-.|+|..+| + .+..+.|+.
T Consensus 22 ~glsq~~lA~~~g-i----s~~~i~~~e 44 (84)
T 2ef8_A 22 ASLSQSELAIFLG-L----SQSDISKIE 44 (84)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHH
T ss_pred cCCCHHHHHHHhC-C----CHHHHHHHH
Confidence 4688999999998 7 555555443
No 348
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=48.99 E-value=16 Score=22.66 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=20.5
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+.+||+..| + ....+++
T Consensus 26 l~~~~G~-~~~ti~~IA~~ag-v----s~~t~Y~ 53 (212)
T 3knw_A 26 LVLRKGF-VGVGLQEILKTSG-V----PKGSFYH 53 (212)
T ss_dssp HHHHHCS-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHcCC-ccCCHHHHHHHhC-C----ChHHHHH
Confidence 3555552 5799999999999 9 6665554
No 349
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=48.89 E-value=22 Score=21.03 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=23.6
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcch----HHHHHHHH
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTM----LDRILGLL 75 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~----l~RlLR~L 75 (89)
-+..|+..+.+ ++|..|||+.++ + .+.. +.|+++.|
T Consensus 38 re~~Vl~l~~~-----G~s~~EIA~~L~-i----S~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 38 KESEVLRLFAE-----GFLVTEIAKKLN-R----SIKTISSQKKSAMMKL 77 (99)
T ss_dssp HHHHHHHHHHH-----TCCHHHHHHHHT-S----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCHHHHHHHHC-c----CHHHHHHHHHHHHHHH
Confidence 34456665543 589999999999 8 6654 44444443
No 350
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=48.84 E-value=10 Score=30.24 Aligned_cols=33 Identities=9% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCcee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
..+|.+||++.++ . ++..|.|.|..|+..+|+.
T Consensus 602 ~~~t~~ei~~~t~-i----~~~~l~r~L~~l~k~~iL~ 634 (760)
T 1ldj_A 602 DAYTVQQLTDSTQ-I----KMDILAQVLQILLKSKLLV 634 (760)
T ss_dssp SEEEHHHHHHHTC-C----CHHHHHHHHHHHHHTTTEE
T ss_pred CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcce
Confidence 5899999999999 9 8999999999999999998
No 351
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=48.51 E-value=15 Score=22.40 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=16.3
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCC
Q 045477 37 IIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
.+.+.|- ...|+.+||+..| +
T Consensus 19 l~~~~G~-~~~s~~~IA~~ag-v 39 (180)
T 2fd5_A 19 ALLERGA-VEPSVGEVMGAAG-L 39 (180)
T ss_dssp HHHHHTT-TSCCHHHHHHHTT-C
T ss_pred HHHHhCc-ccCCHHHHHHHhC-C
Confidence 3555552 5799999999999 9
No 352
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=48.17 E-value=15 Score=22.72 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=19.7
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+++||+..| + ....+++
T Consensus 19 l~~~~G~-~~~t~~~Ia~~ag-v----s~~t~Y~ 46 (195)
T 2dg7_A 19 LYSEHGY-DNVTVTDIAERAG-L----TRRSYFR 46 (195)
T ss_dssp HHHHSCG-GGCCHHHHHHHTT-C----CHHHHHH
T ss_pred HHHhcCc-cccCHHHHHHHhC-C----CHHHHHH
Confidence 3555442 5689999999999 8 6655554
No 353
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=47.75 E-value=17 Score=22.52 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=20.1
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+++||++.| + ....+++
T Consensus 24 lf~e~G~-~~~t~~~IA~~ag-v----sk~tlY~ 51 (192)
T 2fq4_A 24 LLLESGF-KAVTVDKIAERAK-V----SKATIYK 51 (192)
T ss_dssp HHHHHCT-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHcCc-ccccHHHHHHHcC-C----CHHHHHH
Confidence 3555542 5799999999999 9 6655543
No 354
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=47.70 E-value=30 Score=20.53 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=26.9
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCc
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGI 80 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi 80 (89)
+.+|+.|+|.+-+ + ++..+.+=.|..-..|.
T Consensus 48 g~~s~~e~arry~-I----s~s~i~~W~r~~~~~G~ 78 (95)
T 2jrt_A 48 GLITEREALDRYS-L----SEEEFALWRSAVAAHGE 78 (95)
T ss_dssp TSSCHHHHHHHTT-C----CHHHHHHHHHHTTTCCT
T ss_pred CCCCHHHHHHHhC-C----CHHHHHHHHHHHHHHhH
Confidence 7899999999999 9 88899998888766654
No 355
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=47.58 E-value=18 Score=22.65 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.+.|- ..+|+.+||+..| + ....+++
T Consensus 41 ~l~~~~G~-~~~t~~~IA~~aG-v----s~~t~Y~ 69 (222)
T 3bru_A 41 EHLTEKGY-SSVGVDEILKAAR-V----PKGSFYH 69 (222)
T ss_dssp HHHHHSCT-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHHcCC-CcCcHHHHHHHhC-C----Ccchhhh
Confidence 34666553 5799999999999 9 6655443
No 356
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=47.51 E-value=22 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=15.6
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..|||+.+| + .+..+.++.
T Consensus 33 ~gltq~elA~~~g-i----s~~~is~~E 55 (114)
T 3vk0_A 33 KGWSQEELARQCG-L----DRTYVSAVE 55 (114)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 4688888888888 7 555555443
No 357
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=47.34 E-value=24 Score=20.28 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=24.1
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcch----HHHHHHHHh
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTM----LDRILGLLA 76 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~----l~RlLR~L~ 76 (89)
+..|+..+. .++|..|||+.++ + .+.. +.|+++.|-
T Consensus 32 e~~vl~l~~-----~g~s~~eIA~~l~-i----s~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 32 ERTLLGLLS-----EGLTNKQIADRMF-L----AEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp HHHHHHHHH-----TTCCHHHHHHHHT-C----CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----cCCCHHHHHHHHC-c----CHHHHHHHHHHHHHHHc
Confidence 455666652 4689999999999 8 6554 445554443
No 358
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=47.32 E-value=18 Score=22.38 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=20.7
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.+.|- ..+|+.+||+..| + ....+++
T Consensus 42 ~l~~~~G~-~~~tv~~Ia~~ag-v----s~~t~Y~ 70 (218)
T 3dcf_A 42 ELFREKGY-YATSLDDIADRIG-F----TKPAIYY 70 (218)
T ss_dssp HHHHHTCT-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHHcCc-ccCcHHHHHHHhC-C----CHHHHHH
Confidence 34566542 5799999999999 9 6655443
No 359
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=47.10 E-value=14 Score=22.77 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=19.5
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.+.+.|- ...|+++||+..| + ....++
T Consensus 23 lf~~~G~-~~~s~~~Ia~~ag-v----s~~t~Y 49 (203)
T 3b81_A 23 IFIANGY-ENTTLAFIINKLG-I----SKGALY 49 (203)
T ss_dssp HHHHHCS-TTCCHHHHHHHHT-C----CHHHHH
T ss_pred HHHHcCc-ccCcHHHHHHHhC-C----CchhHH
Confidence 3555552 5799999999999 9 555443
No 360
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=46.94 E-value=18 Score=20.45 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.7
Q ss_pred CCHHHHHhhCCCCCCCCCcchHHHHHHHHhc
Q 045477 47 LSASEIAAQLPATKNKDAPTMLDRILGLLAS 77 (89)
Q Consensus 47 ~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s 77 (89)
.+..+||..++ + +..-+.++++.+-+
T Consensus 49 ~~l~eia~~l~-~----~~~eve~vL~~lQ~ 74 (76)
T 2k9l_A 49 KSVEEISDVLR-C----SVEELEKVRQKVLR 74 (76)
T ss_dssp CCHHHHHHHHT-S----CHHHHHHHHHHHHT
T ss_pred CCHHHHHHHcC-C----CHHHHHHHHHHHhc
Confidence 57999999999 9 88899999988754
No 361
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=46.84 E-value=12 Score=22.66 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=20.1
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+.+||++.| + ....+++
T Consensus 22 l~~~~G~-~~~t~~~IA~~ag-v----s~~t~Y~ 49 (191)
T 3on4_A 22 LIQKDGY-NAFSFKDIATAIN-I----KTASIHY 49 (191)
T ss_dssp HHHHHCG-GGCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHhCc-ccCCHHHHHHHhC-C----Ccchhhh
Confidence 3555542 5699999999999 9 6665554
No 362
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=46.56 E-value=19 Score=22.03 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=20.3
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+.+||+..| + ....+++
T Consensus 29 l~~~~G~-~~~s~~~Ia~~ag-v----s~~t~Y~ 56 (206)
T 3kz9_A 29 VFARRGI-GRGGHADIAEIAQ-V----SVATVFN 56 (206)
T ss_dssp HHHHSCC-SSCCHHHHHHHHT-S----CHHHHHH
T ss_pred HHHhcCc-ccccHHHHHHHhC-C----CHHHHHH
Confidence 3555552 5799999999999 9 6655543
No 363
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=46.52 E-value=16 Score=22.07 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=16.6
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRI 71 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~Rl 71 (89)
.++|..|||+.+| + .+..|.++
T Consensus 19 ~glSq~eLA~~~g-i----s~~~is~i 40 (112)
T 2wus_R 19 RRITLLDASLFTN-I----NPSKLKRI 40 (112)
T ss_dssp TTCCHHHHHHHSS-C----CHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHH
Confidence 6799999999999 8 55444443
No 364
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=46.37 E-value=11 Score=25.97 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=19.7
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
+..|..|||+..| + ....+.|+|+
T Consensus 9 ~~~ti~diA~~ag-V----S~~TVSr~Ln 32 (344)
T 3kjx_A 9 RPLTLRDVSEASG-V----SEMTVSRVLR 32 (344)
T ss_dssp -CCCHHHHHHHHC-C----CSHHHHHHHT
T ss_pred CCCCHHHHHHHHC-C----CHHHHHHHHc
Confidence 6789999999999 9 7777877774
No 365
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=46.32 E-value=8.5 Score=28.71 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=35.7
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
..|++.|.. +|.++++|+.+++ . +...+..+|=.|.-.|++...
T Consensus 331 ~~vl~~l~~----~~~~~D~l~~~~g-l----~~~~v~~~L~~LEl~G~v~~~ 374 (382)
T 3maj_A 331 TRILALLGP----SPVGIDDLIRLSG-I----SPAVVRTILLELELAGRLERH 374 (382)
T ss_dssp HHHHHHCCS----SCEEHHHHHHHHC-C----CHHHHHHHHHHHHHTTCCEEC
T ss_pred HHHHHhhCC----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHhCCcEEeC
Confidence 346666642 7999999999999 9 888888888888888888754
No 366
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=46.21 E-value=14 Score=22.53 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.+.+.|- ...|+.+||+..| + ....++
T Consensus 23 lf~~~G~-~~~tv~~Ia~~ag-v----s~~t~Y 49 (196)
T 3he0_A 23 LIAESGF-QGLSMQKLANEAG-V----AAGTIY 49 (196)
T ss_dssp HHHHHCT-TTCCHHHHHHHHT-S----CHHHHH
T ss_pred HHHHhCc-ccCCHHHHHHHhC-C----CcchHH
Confidence 4555553 5799999999999 9 555443
No 367
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=46.21 E-value=19 Score=22.19 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=19.7
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ...|+++||+..| + ....+++
T Consensus 16 f~~~G~-~~~s~~~IA~~ag-v----sk~t~Y~ 42 (190)
T 3vpr_A 16 FTEKGY-EATSVQDLAQALG-L----SKAALYH 42 (190)
T ss_dssp HHHHCS-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHhCc-ccCCHHHHHHHhC-C----CHHHHHH
Confidence 555552 5789999999999 9 6655544
No 368
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=45.74 E-value=22 Score=21.86 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=20.0
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- . .|+.+||+..| + ....+++
T Consensus 27 lf~~~G~-~-~s~~~IA~~ag-v----s~~tlY~ 53 (194)
T 2q24_A 27 VFSEEGL-D-AHLERIAREAG-V----GSGTLYR 53 (194)
T ss_dssp HHHHHCT-T-CCHHHHHHHTT-C----CHHHHHH
T ss_pred HHHhcCc-C-CCHHHHHHHhC-C----ChHHHHH
Confidence 4566664 5 99999999999 9 6655543
No 369
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=45.43 E-value=14 Score=22.91 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=19.2
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.+.+.|- ..+|+.+||+..| + ....++
T Consensus 21 l~~~~G~-~~~ti~~IA~~ag-v----s~~t~Y 47 (193)
T 2dg8_A 21 LIAEEGI-ARVSHRRIAQRAG-V----PLGSMT 47 (193)
T ss_dssp HHHHHCG-GGCCHHHHHHHHT-S----CTHHHH
T ss_pred HHHHhCh-hhccHHHHHHHhC-C----Cchhhh
Confidence 3555542 5789999999999 9 555444
No 370
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=45.40 E-value=34 Score=21.69 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=16.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|.+|||++++ + .+..+.|+.
T Consensus 23 ~gltq~~lA~~~g-i----s~~~is~~e 45 (192)
T 1y9q_A 23 RGLSLDATAQLTG-V----SKAMLGQIE 45 (192)
T ss_dssp TTCCHHHHHHHHS-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 4688999999988 7 555555544
No 371
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=45.38 E-value=21 Score=25.43 Aligned_cols=38 Identities=5% Similarity=0.068 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhcc
Q 045477 35 FEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASY 78 (89)
Q Consensus 35 fd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~ 78 (89)
.+.|.++- ..++|++++|+.++ . .+..|.|+++.-...
T Consensus 311 ~~~i~~~~-~~~~~~~~~a~~~~-~----s~~~l~r~f~~~~g~ 348 (412)
T 4fe7_A 311 MHYIRNHA-CKGIKVDQVLDAVG-I----SRSNLEKRFKEEVGE 348 (412)
T ss_dssp HHHHHHHG-GGTCCHHHHHHHTT-C----CHHHHHHHHHHHHSS
T ss_pred HHHHHhhc-cCCCCHHHHHHHHC-c----CHHHHHHHHHHHHCc
Confidence 45555442 26899999999999 9 999999998866543
No 372
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=45.34 E-value=18 Score=23.21 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=20.1
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.+.|- ..+|+.+||+..| + .+..++
T Consensus 27 ~l~~~~G~-~~~s~~~IA~~ag-v----s~~t~Y 54 (216)
T 2oi8_A 27 EQIATAGA-SALSLNAIAKRMG-M----SGPALY 54 (216)
T ss_dssp HHHHHHCT-TSCCHHHHHHHTT-C----CHHHHH
T ss_pred HHHHhcCc-ccCCHHHHHHHhC-C----CHHHHH
Confidence 34566553 6799999999999 9 555444
No 373
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=45.31 E-value=39 Score=18.91 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=32.4
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeecc
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSVD 86 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~~ 86 (89)
..|+... .+||+.|.|+..+ - .-..-+-.|-.|-+-|-++...|
T Consensus 10 all~s~~--QGMTaGEVAA~f~-w----~Le~ar~aLeqLf~~G~LRKRsS 53 (68)
T 3i71_A 10 ALLTSVR--QGMTAGEVAAHFG-W----PLEKARNALEQLFSAGTLRKRSS 53 (68)
T ss_dssp HHHHHCT--TCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHh--ccccHHHHHHHhC-C----cHHHHHHHHHHHHhcchhhhhcc
Confidence 3455544 7899999999999 7 55556667777778888776654
No 374
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=45.29 E-value=16 Score=23.04 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=32.6
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhC-------CCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQL-------PATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~-------~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
|..+|.+ +|++--||.+.+ + + ++..|++.|+-|...|++....
T Consensus 39 IL~lL~~----~~~~Gyei~k~l~~~~~~~~-i----s~gtLYp~L~rLe~~GlI~~~~ 88 (138)
T 2e1n_A 39 VLAVLRH----EDSYGTELIQHLETHWPNYR-L----SDTVLYTALKFLEDEQIISGYW 88 (138)
T ss_dssp HHHHHTT----SCEEHHHHHHHHHHHSTTEE-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh----CCCcHHHHHHHHHHHcCCCC-C----CccHHHHHHHHHHHCCCEEEEe
Confidence 4445543 688777777665 3 5 7889999999999999998653
No 375
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=45.28 E-value=15 Score=20.89 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=22.1
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHh
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLA 76 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~ 76 (89)
..|..+||..++ + .+..|+|.++..-
T Consensus 38 g~s~~~iA~~~g-I----s~sTl~rW~k~~~ 63 (87)
T 2elh_A 38 GESKASVARDIG-V----PESTLRGWCKNED 63 (87)
T ss_dssp TCCHHHHHHHHT-C----CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHC-c----CHHHHHHHHHHHH
Confidence 378999999999 9 8889999886544
No 376
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=45.26 E-value=23 Score=21.92 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=19.7
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ...|+++||+..| + ....+++
T Consensus 23 ~~~~G~-~~~ti~~Ia~~ag-v----s~~t~Y~ 49 (216)
T 3s5r_A 23 FAEQGI-AATTMAEIAASVG-V----NPAMIHY 49 (216)
T ss_dssp HHHHCT-TTCCHHHHHHTTT-C----CHHHHHH
T ss_pred HHHcCc-ccCCHHHHHHHHC-C----CHHHHHH
Confidence 555542 5799999999999 9 6655543
No 377
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=45.17 E-value=19 Score=22.02 Aligned_cols=27 Identities=4% Similarity=0.144 Sum_probs=19.9
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- . .|+.+||+..| + ....+++
T Consensus 21 lf~~~G~-~-~t~~~IA~~aG-v----s~~tly~ 47 (190)
T 3jsj_A 21 LTYRDGV-G-IGVEALCKAAG-V----SKRSMYQ 47 (190)
T ss_dssp HHHHHCT-T-CCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHhCc-c-ccHHHHHHHhC-C----CHHHHHH
Confidence 3566664 6 99999999999 9 6655543
No 378
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=45.15 E-value=22 Score=22.13 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=19.4
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ...|+++||+..| + ....+++
T Consensus 25 f~~~G~-~~~s~~~IA~~aG-v----s~~tlY~ 51 (197)
T 2hyt_A 25 FSERGY-ADTSMDDLTAQAS-L----TRGALYH 51 (197)
T ss_dssp HHHHCT-TTCCHHHHHHHHT-C----CTTHHHH
T ss_pred HHHhCc-ccCCHHHHHHHhC-C----CHHHHHH
Confidence 455542 5799999999999 9 5555443
No 379
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=45.12 E-value=21 Score=22.24 Aligned_cols=28 Identities=7% Similarity=-0.053 Sum_probs=20.4
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+.+||++.| + ....+++
T Consensus 24 l~~~~G~-~~~ti~~Ia~~ag-v----s~~t~Y~ 51 (189)
T 3vp5_A 24 EFQTHSF-HEAKIMHIVKALD-I----PRGSFYQ 51 (189)
T ss_dssp HHHHSCT-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHCCc-ccccHHHHHHHhC-C----ChHHHHH
Confidence 3566553 5789999999999 9 6655543
No 380
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=45.09 E-value=23 Score=22.14 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=15.9
Q ss_pred HHhcCCCCCCCHHHHHhhCCCC
Q 045477 38 IAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.+.|- ...|+++||+..| +
T Consensus 24 f~~~G~-~~~s~~~IA~~aG-v 43 (210)
T 2xdn_A 24 FYKRGV-ARTTLADIAELAG-V 43 (210)
T ss_dssp HHHHCS-TTCCHHHHHHHHT-C
T ss_pred HHHcCc-ccCcHHHHHHHHC-C
Confidence 455542 5799999999999 9
No 381
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=45.08 E-value=20 Score=21.86 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=19.1
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.|= ...|+++||+..| + ....++
T Consensus 15 f~~~Gy-~~~s~~~Ia~~ag-v----skgtlY 40 (179)
T 2eh3_A 15 FFEKGY-QGTSVEEIVKRAN-L----SKGAFY 40 (179)
T ss_dssp HHHHCS-TTCCHHHHHHHHT-C----CHHHHH
T ss_pred HHHcCC-ccCCHHHHHHHhC-C----CcHHHH
Confidence 555552 5799999999999 9 555444
No 382
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=45.07 E-value=23 Score=22.02 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.0
Q ss_pred HHhcCCCCCCCHHHHHhhCCCC
Q 045477 38 IAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.+.|- ...|+++||+..| +
T Consensus 27 f~~~G~-~~~s~~~IA~~ag-v 46 (204)
T 2ibd_A 27 FAERGL-RATTVRDIADAAG-I 46 (204)
T ss_dssp HHHHCS-TTCCHHHHHHHTT-S
T ss_pred HHHcCc-hhcCHHHHHHHhC-C
Confidence 555552 5789999999999 9
No 383
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=45.00 E-value=14 Score=25.66 Aligned_cols=36 Identities=19% Similarity=0.449 Sum_probs=28.6
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhc
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLAS 77 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s 77 (89)
.|.+.+.+ ...+.++|++.+. . ||.+..||||+.-|
T Consensus 24 ~l~~~~~~----~~~~~~~la~~I~-~----Dp~Lt~~lLr~aNS 59 (288)
T 3ljx_A 24 AILNLAQR----EDVTAEALAQLIQ-T----DPALTGRILRFANA 59 (288)
T ss_dssp HHHHHHTS----TTCCHHHHHHHHT-T----CHHHHHHHHHHHHS
T ss_pred HHHHHHcC----CCCCHHHHHHHHH-H----CHHHHHHHHHHHcC
Confidence 34444543 3579999999999 9 99999999998765
No 384
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=44.85 E-value=14 Score=22.40 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+.+||+..| + ....+++
T Consensus 20 l~~~~G~-~~~ti~~Ia~~ag-v----s~~t~Y~ 47 (194)
T 2g7s_A 20 LIIRGGY-NSFSYADISQVVG-I----RNASIHH 47 (194)
T ss_dssp HHHHHCG-GGCCHHHHHHHHC-C----CHHHHHH
T ss_pred HHHHcCc-ccCCHHHHHHHhC-C----CchHHHH
Confidence 3555542 5689999999999 9 6655443
No 385
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=44.74 E-value=20 Score=22.31 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=19.6
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ...|+.+||+..| + ....+++
T Consensus 24 f~~~G~-~~~ti~~Ia~~ag-v----s~~t~Y~ 50 (216)
T 3f0c_A 24 FAHYGL-CKTTMNEIASDVG-M----GKASLYY 50 (216)
T ss_dssp HHHHCS-SSCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHcCC-CcCCHHHHHHHhC-C----CHHHHHH
Confidence 555552 5799999999999 9 6655443
No 386
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=44.70 E-value=13 Score=20.74 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=16.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|-.++|..+| + .+..+.|+.
T Consensus 29 ~glsq~~lA~~~g-i----s~~~is~~e 51 (92)
T 1lmb_3 29 LGLSQESVADKMG-M----GQSGVGALF 51 (92)
T ss_dssp HTCCHHHHHHHHT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 3588888888888 7 555555544
No 387
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=44.58 E-value=13 Score=25.59 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=28.9
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhc
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLAS 77 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s 77 (89)
.|.+.+.+ ...+.++|++.+. . ||.+..||||+.=+
T Consensus 23 ~l~~~~~~----~~~~~~~la~~I~-~----Dp~Ls~~lLr~aNS 58 (275)
T 3m1t_A 23 ELLDVVNN----EDSTVKAVSEKLS-H----DPVLSARVLRLANS 58 (275)
T ss_dssp HHHHHHHC----TTCCHHHHHHHHH-T----CHHHHHHHHHHHTT
T ss_pred HHHHHHcC----CCCCHHHHHHHHH-H----CHHHHHHHHHHhcc
Confidence 44555554 4679999999999 9 99999999998755
No 388
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=44.49 E-value=12 Score=20.30 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=21.6
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGL 74 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~ 74 (89)
.-++..|+++.+| + ....++|+++.
T Consensus 9 ~~l~~~eva~~lg-v----srstiy~~~~~ 33 (66)
T 1z4h_A 9 SLVDLKFIMADTG-F----GKTFIYDRIKS 33 (66)
T ss_dssp SEECHHHHHHHHS-S----CHHHHHHHHHH
T ss_pred cccCHHHHHHHHC-c----CHHHHHHHHHC
Confidence 5689999999999 9 88889998763
No 389
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=44.46 E-value=18 Score=22.08 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.8
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCcee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
+.|..+||..++ + +...++|.++.....|.+.
T Consensus 48 G~s~~~iA~~lg-i----s~~TV~rw~~~~~~~G~~~ 79 (149)
T 1k78_A 48 GVRPCDISRQLR-V----SHGCVSKILGRYYETGSIK 79 (149)
T ss_dssp TCCHHHHHHHHT-C----CHHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHC-c----CHHHHHHHHHHHHHcCCCC
Confidence 479999999999 9 8999999998877666543
No 390
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=44.37 E-value=14 Score=21.90 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.9
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..+|-.|||+.+| + .+..+.++.+
T Consensus 26 ~gltq~eLA~~lG-i----s~~~is~ie~ 49 (104)
T 3trb_A 26 DKMSANQLAKHLA-I----PTNRVTAILN 49 (104)
T ss_dssp TSCCHHHHHHHHT-S----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHc
Confidence 5799999999999 8 6666666653
No 391
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=44.33 E-value=16 Score=26.76 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=29.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhc-----cCceee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLAS-----YGIVEC 83 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s-----~gi~~e 83 (89)
..+|.+||++.++ . +...|.|.|..|+. .+++..
T Consensus 214 ~~lt~~ei~~~t~-i----~~~~L~r~L~sL~~~~k~k~~iL~~ 252 (382)
T 3dpl_C 214 EKISFENLKLATE-L----PDAELRRTLWSLVAFPKLKRQVLLY 252 (382)
T ss_dssp CCEEHHHHHHHHC-C----CHHHHHHHHHHHHCCTTCSSCSEEE
T ss_pred CcCcHHHHHHHHC-c----CHHHHHHHHHHHhcccchhcceeee
Confidence 5799999999999 9 89999999999986 357654
No 392
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=44.05 E-value=24 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.4
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
+.|..+||..++ + ....++|+++
T Consensus 175 G~s~~~Ia~~l~-i----s~~tv~r~l~ 197 (209)
T 2r0q_C 175 GQAISKIAKEVN-I----TRQTVYRIKH 197 (209)
T ss_dssp TCCHHHHHHHHT-C----CHHHHHHHHT
T ss_pred CCCHHHHHHHHC-c----CHHHHHHHHh
Confidence 479999999999 9 7778888775
No 393
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=43.99 E-value=21 Score=22.21 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=20.8
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+.+||+..| + ....+++
T Consensus 29 l~~~~G~-~~~t~~~IA~~ag-v----s~~t~Y~ 56 (218)
T 3gzi_A 29 LFIERPY-AQVSIREIASLAG-T----DPGLIRY 56 (218)
T ss_dssp HHHTSCC-SCCCHHHHHHHHT-S----CTHHHHH
T ss_pred HHHHCCC-CcCCHHHHHHHhC-C----CHHHHHH
Confidence 4566552 5789999999999 9 6666554
No 394
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=43.96 E-value=40 Score=20.87 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=27.6
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
...|++.|.+-+.|.-.|-.|||+.+| . |..+..+.+.|+
T Consensus 7 q~~Vw~~l~~IP~G~v~TYg~IA~~~G-~--p~aaRaVG~Al~ 46 (116)
T 3gva_A 7 YTKVYDAVCEIPYGKVSTYGEIARYVG-M--PSYARQVGQAMK 46 (116)
T ss_dssp HHHHHHHHTTSCTTCBBCHHHHHHHTT-C--TTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEeHHHHHHHhC-C--CCcHHHHHHHHH
Confidence 346777777655558899999999999 3 334455555554
No 395
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=43.55 E-value=48 Score=19.42 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=35.5
Q ss_pred HHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 27 KAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 27 ~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
+..++--|+.-.... |.++.++--..++ + |+....||..+++..|.+..
T Consensus 41 YL~~K~~li~E~~~~---g~l~k~da~~~~k-i----D~~K~~~iydf~~~~Gwi~~ 89 (90)
T 2aqe_A 41 YLEYKSALLNECHKQ---GGLRLAQARALIK-I----DVNKTRKIYDFLIREGYITK 89 (90)
T ss_dssp HHHHHHHHHHHHHHH---SCCCHHHHHTTSS-S----SSHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHc---CCCcHHHHHHHHc-c----cHHHHHHHHHHHHHcCCCCC
Confidence 333444444444443 4688888777788 9 99999999999999998853
No 396
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=43.55 E-value=17 Score=22.08 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=22.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLL 75 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L 75 (89)
.++|-+|||..+| + ....+.|+++..
T Consensus 33 ~g~tQ~eIA~~lG-i----SR~~VsrlL~~A 58 (101)
T 2w7n_A 33 DGKPQATFATSLG-L----TRGAVSQAVHRV 58 (101)
T ss_dssp TCCCHHHHHHHHT-C----CHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHC-C----CHHHHHHHHHHH
Confidence 5789999999999 9 788888888653
No 397
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=43.21 E-value=15 Score=22.42 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=19.7
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ..+|+.+||+..| + ....+++
T Consensus 21 ~~~~G~-~~~t~~~Ia~~ag-v----s~~t~Y~ 47 (206)
T 3dew_A 21 FAQKGF-YGVSIRELAQAAG-A----SISMISY 47 (206)
T ss_dssp HHHHCG-GGCCHHHHHHHHT-C----CHHHHHH
T ss_pred HhcCCc-ccCcHHHHHHHhC-C----CHHHHHH
Confidence 455442 4799999999999 9 6666554
No 398
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=43.16 E-value=16 Score=21.75 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=24.4
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCc
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGI 80 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi 80 (89)
+.|..+||..+| + +...++|.++.....|.
T Consensus 22 G~s~~~ia~~lg-i----s~~Tv~r~~~~~~~~g~ 51 (141)
T 1u78_A 22 NVSLHEMSRKIS-R----SRHCIRVYLKDPVSYGT 51 (141)
T ss_dssp TCCHHHHHHHHT-C----CHHHHHHHHHSGGGTTC
T ss_pred CCCHHHHHHHHC-c----CHHHHHHHHHcccccCC
Confidence 479999999999 9 88899998876655553
No 399
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=43.15 E-value=22 Score=22.31 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=20.1
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ...|+.+||+..| + ....+++
T Consensus 21 f~~~G~-~~~s~~~IA~~aG-v----s~~tiY~ 47 (202)
T 2d6y_A 21 FARHGI-AGARIDRIAAEAR-A----NKQLIYA 47 (202)
T ss_dssp HHHHTT-TSCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHcCc-ccCCHHHHHHHhC-C----CHHHHHH
Confidence 555542 5799999999999 9 6666554
No 400
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=43.03 E-value=40 Score=20.38 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=20.1
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.+.|- ...|+.+||+..| + .+..++
T Consensus 18 ~l~~~~G~-~~~t~~~IA~~ag-v----s~~t~Y 45 (199)
T 3qbm_A 18 ALFNVSGY-AGTAISDIMAATG-L----EKGGIY 45 (199)
T ss_dssp HHHHHHCS-TTCCHHHHHHHHT-C----CHHHHH
T ss_pred HHHHHhCc-CcCCHHHHHHHhC-C----CccHHH
Confidence 34555553 6799999999999 9 555444
No 401
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=42.58 E-value=22 Score=22.56 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=20.3
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+.+||+..| + ....+++
T Consensus 47 lf~~~G~-~~~t~~~IA~~AG-v----s~~tlY~ 74 (221)
T 3g7r_A 47 IFYAEGI-HSVGIDRITAEAQ-V----TRATLYR 74 (221)
T ss_dssp HHHHHCS-TTSCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHhCc-ccCCHHHHHHHhC-C----CHHHHHH
Confidence 3555552 5799999999999 9 6655543
No 402
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=42.48 E-value=12 Score=25.80 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhc
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLAS 77 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s 77 (89)
...+..+|++.+. . ||.+..||||+.=+
T Consensus 40 ~~~~~~~la~~I~-~----Dp~Ls~~lLr~aNS 67 (281)
T 3i7a_A 40 PDSSLKQVAEIIG-Q----DAAISARIIKVANS 67 (281)
T ss_dssp TTCCHHHHHHHHH-T----CHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHH-H----CHHHHHHHHHHHhh
Confidence 4679999999999 9 99999999998765
No 403
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=42.46 E-value=23 Score=21.86 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=19.8
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ...|+.+||+..| + ....+++
T Consensus 29 f~~~G~-~~~t~~~Ia~~ag-v----s~~t~Y~ 55 (213)
T 2qtq_A 29 MREGDV-VDISLSELSLRSG-L----NSALVKY 55 (213)
T ss_dssp HHHHTS-SCCCHHHHHHHHC-C----CHHHHHH
T ss_pred HHHcCc-ccccHHHHHHHhC-C----ChhhHhH
Confidence 555542 5799999999999 9 6655554
No 404
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=42.44 E-value=10 Score=27.31 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=21.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
+.+|++||++.|+ . ...-|+..|..+|++..
T Consensus 207 ~~isi~~is~~T~-i-------~~~Dii~tL~~l~~l~~ 237 (278)
T 2pq8_A 207 GTLSIKDLSQMTS-I-------TQNDIISTLQSLNMVKY 237 (278)
T ss_dssp ----CHHHHHHHC-B-------CHHHHHHHHHHTTCEEC
T ss_pred CCccHHHHHHHhC-C-------CHHHHHHHHHHCCCEEE
Confidence 6899999999999 8 34557777788888754
No 405
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=42.24 E-value=17 Score=21.79 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=16.3
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.++|..|||+.+| + .+..+.
T Consensus 123 ~g~s~~EIA~~lg-i----s~~tV~ 142 (164)
T 3mzy_A 123 RGYSYREIATILS-K----NLKSID 142 (164)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHH
T ss_pred cCCCHHHHHHHHC-C----CHHHHH
Confidence 5789999999999 9 665544
No 406
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=42.06 E-value=14 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.278 Sum_probs=17.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..+||+.+| + .+..+.|+.
T Consensus 30 ~gltq~~lA~~~g-i----s~~~is~~e 52 (104)
T 3cec_A 30 LDINTANFAEILG-V----SNQTIQEVI 52 (104)
T ss_dssp HTCCHHHHHHHHT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 3688999999998 8 666666554
No 407
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=42.01 E-value=16 Score=23.43 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=22.3
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRI 71 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~Rl 71 (89)
+.+.+.|- ..+|+.+||+..| + ....+++-
T Consensus 50 ~lf~e~G~-~~~tv~~IA~~AG-v----s~~tlY~~ 79 (214)
T 2guh_A 50 RAFATRPY-REITLKDIAEDAG-V----SAPLIIKY 79 (214)
T ss_dssp HHHHHSCG-GGCCHHHHHHHHT-S----CHHHHHHH
T ss_pred HHHHHcCh-hhcCHHHHHHHhC-C----CHHHHHHH
Confidence 34666542 5689999999999 9 77776654
No 408
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=41.77 E-value=23 Score=22.84 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=25.7
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcc----hHHHHHHHHh
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPT----MLDRILGLLA 76 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~----~l~RlLR~L~ 76 (89)
|..|+..|.+ ++|.+|||+.++ . ++. .+.|+++-|-
T Consensus 154 E~~vL~~l~~-----g~s~~eIa~~l~-i----s~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 154 ERTLLGLLSE-----GLTNKQIADRMF-L----AEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp HHHHHHHHHT-----TCCHHHHHHHHT-C----CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-----CCCHHHHHHHhC-C----CHHHHHHHHHHHHHHhC
Confidence 4556666664 489999999999 8 666 4666666553
No 409
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=41.66 E-value=20 Score=19.95 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=17.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|-.|||+.++ + .+..+.++.
T Consensus 25 ~glsq~~lA~~~g-i----s~~~is~~e 47 (91)
T 1x57_A 25 KGLTQKDLATKIN-E----KPQVIADYE 47 (91)
T ss_dssp TTCCHHHHHHHHT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 5789999999998 8 555555544
No 410
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=41.25 E-value=15 Score=22.61 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=16.8
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCC
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATK 60 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~ 60 (89)
.+.+.|- ..+|+.+||+..| ++
T Consensus 28 l~~~~G~-~~~t~~~Ia~~ag-vs 49 (211)
T 3him_A 28 VFAAKGY-GATTTREIAASLD-MS 49 (211)
T ss_dssp HHHHHCS-TTCCHHHHHHHTT-CC
T ss_pred HHHHcCC-CcCCHHHHHHHhC-CC
Confidence 3555553 5799999999999 83
No 411
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=41.24 E-value=14 Score=25.13 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLL 75 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L 75 (89)
.+.|.++||+.+| . ++..+.|.+|++
T Consensus 133 ~g~t~~~iA~~lG-~----s~~~V~~~l~l~ 158 (230)
T 1vz0_A 133 MGLTQEEVARRVG-K----ARSTVANALRLL 158 (230)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHHHH
Confidence 3589999999999 9 898999999876
No 412
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=41.12 E-value=16 Score=22.90 Aligned_cols=27 Identities=33% Similarity=0.271 Sum_probs=19.3
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.+.+.|- ..+|+.+||+..| + ....++
T Consensus 24 l~~e~G~-~~~s~~~IA~~ag-v----s~~t~Y 50 (198)
T 3cjd_A 24 QIEAEGL-ASLRARELARQAD-C----AVGAIY 50 (198)
T ss_dssp HHHHHCG-GGCCHHHHHHHHT-S----CHHHHH
T ss_pred HHHhCCh-hhcCHHHHHHHhC-C----CccHHH
Confidence 3555542 5799999999999 9 555444
No 413
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=41.03 E-value=24 Score=20.91 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=27.1
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeee
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECS 84 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~ 84 (89)
.-...+|.+..+ . ++ ++..|+.+|+-|...|+++..
T Consensus 28 ~~i~~ei~~~~~-~-~i-s~GtlYp~L~rLe~~GlI~~~ 63 (99)
T 2co5_A 28 KRLRSEILKRFD-I-DI-SDGVLYPLIDSLIDDKILREE 63 (99)
T ss_dssp GGHHHHHHHHHC-C-BC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhC-C-CC-CCCcHHHHHHHHHHCCCEEEe
Confidence 344577777764 2 11 788999999999999999864
No 414
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=40.98 E-value=24 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=19.9
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.+.+.|- ..+|+.+||++.| + ....++
T Consensus 55 l~~~~G~-~~~tv~~IA~~AG-v----s~~t~Y 81 (229)
T 3bni_A 55 LLDEVGY-DALSTRAVALRAD-V----PIGSVY 81 (229)
T ss_dssp HHHHHCT-TTCCHHHHHHHHT-C----CHHHHH
T ss_pred HHHhcCh-hhccHHHHHHHHC-C----CchhHH
Confidence 4555553 5799999999999 9 665544
No 415
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=40.96 E-value=17 Score=22.26 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=19.7
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+.+||+..| + ....+++
T Consensus 29 lf~~~G~-~~~ti~~Ia~~ag-v----s~~t~Y~ 56 (208)
T 3cwr_A 29 LLSSGGA-AAMTMEGVASEAG-I----AKKTLYR 56 (208)
T ss_dssp HHHHHCG-GGCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHcCH-HhccHHHHHHHhC-C----CHHHHHH
Confidence 3555542 5689999999999 9 6655443
No 416
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=40.93 E-value=20 Score=19.45 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=17.3
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|-.|+|+.+| + .+..+.|+-
T Consensus 23 ~gltq~elA~~~g-v----s~~tis~~E 45 (73)
T 3fmy_A 23 LSLTQKEASEIFG-G----GVNAFSRYE 45 (73)
T ss_dssp TTCCHHHHHHHHC-S----CTTHHHHHH
T ss_pred cCCCHHHHHHHhC-c----CHHHHHHHH
Confidence 5799999999999 8 555555543
No 417
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=40.68 E-value=22 Score=22.11 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.6
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCC
Q 045477 37 IIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
.+.+.|= ...|+++||+..| +
T Consensus 26 lf~~~G~-~~~s~~~Ia~~ag-v 46 (203)
T 3ccy_A 26 MFARQGY-SETSIGDIARACE-C 46 (203)
T ss_dssp HHHHTCT-TTSCHHHHHHHTT-C
T ss_pred HHHHcCc-ccCCHHHHHHHhC-C
Confidence 3566552 6799999999999 9
No 418
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=40.64 E-value=21 Score=19.91 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=15.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRI 71 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~Rl 71 (89)
.++|-.|||+.+| + .+..+.++
T Consensus 26 ~gltq~elA~~~g-i----s~~~is~~ 47 (86)
T 3eus_A 26 AGLTQADLAERLD-K----PQSFVAKV 47 (86)
T ss_dssp TTCCHHHHHHHTT-C----CHHHHHHH
T ss_pred cCCCHHHHHHHhC-c----CHHHHHHH
Confidence 4689999999988 7 44444433
No 419
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=40.62 E-value=24 Score=22.12 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=20.4
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.| ...|+.+||+..| + ....+++
T Consensus 32 lf~~~G--~~~s~~~IA~~aG-v----s~~tlY~ 58 (215)
T 2hku_A 32 LFLEHG--EGVPITQICAAAG-A----HPNQVTY 58 (215)
T ss_dssp HHHHHC--TTSCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHhC--CCcCHHHHHHHhC-C----CHHHHHH
Confidence 355555 6899999999999 9 6666554
No 420
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=40.61 E-value=23 Score=23.88 Aligned_cols=40 Identities=10% Similarity=0.304 Sum_probs=30.0
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHH
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLL 75 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L 75 (89)
.=+.+...|.+.|. .-+|.+|||+.+| + ++..++|=+-++
T Consensus 18 ~Y~r~l~~l~~~g~-~~iss~~l~~~~~-~----~~~~iRkdls~f 57 (215)
T 2vt3_A 18 LYYRFLKNLHASGK-QRVSSAELSDAVK-V----DSATIRRDFSYF 57 (215)
T ss_dssp HHHHHHHHHHHTTC-CEECHHHHHHHHC-C----CHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-cEECHHHHHHHhC-C----CHHHeechHHHH
Confidence 33455666777652 5689999999999 9 898888766655
No 421
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=40.53 E-value=20 Score=24.41 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=28.1
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHH
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLL 75 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L 75 (89)
+.....|.+.|. .-+|.+|||+.+| + ++..++|=|-++
T Consensus 19 ~r~l~~l~~~g~-~~isS~ela~~~g-v----~~~qiRkDls~f 56 (212)
T 3keo_A 19 YRIFKRFNTDGI-EKASSKQIADALG-I----DSATVRRDFSYF 56 (212)
T ss_dssp HHHHHHHHHTTC-CEECHHHHHHHHT-S----CHHHHHHHHHTT
T ss_pred HHHHHHHHHCCC-eEECHHHHHHHHC-C----CHHHHHHHHHHH
Confidence 445566666653 5689999999999 9 888888755444
No 422
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=40.45 E-value=14 Score=22.52 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=16.0
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCC
Q 045477 37 IIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
.+.+.|- ..+|+.+||++.| +
T Consensus 22 l~~~~G~-~~~ti~~Ia~~ag-v 42 (196)
T 3col_A 22 IILAEGP-AGVSTTKVAKRVG-I 42 (196)
T ss_dssp HHHHHCG-GGCCHHHHHHHHT-S
T ss_pred HHHhcCc-ccCCHHHHHHHhC-C
Confidence 3555442 4799999999999 9
No 423
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=40.30 E-value=26 Score=21.77 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=19.0
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.|- ...|+++||+..| + ....++
T Consensus 20 f~~~G~-~~ts~~~IA~~aG-v----s~gtlY 45 (197)
T 2gen_A 20 FSEHGV-DATTIEMIRDRSG-A----SIGSLY 45 (197)
T ss_dssp HHHHCT-TTCCHHHHHHHHC-C----CHHHHH
T ss_pred HHHcCc-ccCCHHHHHHHHC-C----ChHHHH
Confidence 455542 5789999999999 9 555544
No 424
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=40.25 E-value=16 Score=24.87 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=16.9
Q ss_pred CCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 47 LSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 47 ~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
.|..|||+..| + ....+.|+|+
T Consensus 3 ~ti~dvA~~ag-V----S~~TVSrvln 24 (332)
T 2hsg_A 3 VTIYDVAREAS-V----SMATVSRVVN 24 (332)
T ss_dssp CCHHHHHHHTT-S----CHHHHHHHHT
T ss_pred CCHHHHHHHhC-C----CHHHHHHHHc
Confidence 57888888888 8 6777777665
No 425
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=40.12 E-value=16 Score=22.25 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.3
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCC
Q 045477 37 IIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
.+.+.|- ...|+.+||+..| +
T Consensus 22 lf~~~G~-~~~t~~~IA~~ag-v 42 (197)
T 3rd3_A 22 IMAVKGF-SGVGLNEILQSAG-V 42 (197)
T ss_dssp HHHHHCS-TTCCHHHHHHHHT-C
T ss_pred HHHHCCc-ccCCHHHHHHHhC-C
Confidence 3555542 5789999999999 9
No 426
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=40.07 E-value=19 Score=22.35 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=19.5
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.+.+.|- ...|+.+||+..| + ....++
T Consensus 20 lf~~~G~-~~~t~~~IA~~ag-v----s~~tlY 46 (199)
T 2o7t_A 20 LYRTHHH-DSLTMENIAEQAG-V----GVATLY 46 (199)
T ss_dssp HHHHSCG-GGCCHHHHHHHHT-C----CHHHHH
T ss_pred HHHHCCC-ccCCHHHHHHHhC-C----CHHHHH
Confidence 4555542 5789999999999 9 665544
No 427
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=40.05 E-value=18 Score=22.45 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=19.7
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ...|+.+||+..| + ....+++
T Consensus 39 ~~~~G~-~~~t~~~Ia~~ag-v----s~~t~Y~ 65 (217)
T 3mvp_A 39 FSDKTY-FNVTTNEIAKKAD-V----SVGTLYA 65 (217)
T ss_dssp HHHHCG-GGCCHHHHHHHHT-S----CHHHHHH
T ss_pred HHHcCc-cccCHHHHHHHhC-C----ChhHHHH
Confidence 555542 5799999999999 9 6665554
No 428
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=39.98 E-value=21 Score=21.88 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=27.2
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
..|++.|.+-+.|.-.|..|||+.+| . |..+..+.+.|+
T Consensus 6 ~~V~~~l~~IP~G~v~TYg~iA~~~G-~--p~aaRaVG~Al~ 44 (108)
T 2kif_A 6 VQIFAVIHQIPKGKVSTYGEIAKMAG-Y--PGYARHVGKALG 44 (108)
T ss_dssp HHHHHHHTTCCTTCBEEHHHHHHHHT-C--TTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcEeHHHHHHHhC-C--CCcHHHHHHHHH
Confidence 45777777655557899999999999 3 334555666554
No 429
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=39.73 E-value=27 Score=21.90 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=18.7
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.|- ...|+++||+..| + ....++
T Consensus 24 f~~~G~-~~~s~~~IA~~aG-v----skgtlY 49 (210)
T 2wui_A 24 FLEKGV-GTTAMADLADAAG-V----SRGAVY 49 (210)
T ss_dssp HHHSCT-TTCCHHHHHHHHT-S----CHHHHH
T ss_pred HHHcCc-cccCHHHHHHHhC-C----CHHHHH
Confidence 555552 5789999999999 9 554444
No 430
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=39.42 E-value=39 Score=21.41 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=15.8
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..|||+++| + .+..+.|+.
T Consensus 22 ~g~s~~~la~~~g-i----s~~~ls~~e 44 (198)
T 2bnm_A 22 VKMDHAALASLLG-E----TPETVAAWE 44 (198)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 4688899998888 7 444444443
No 431
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=39.36 E-value=26 Score=21.86 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=15.6
Q ss_pred HHhcCCCCCCCHHHHHhhCCCC
Q 045477 38 IAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.+.|- ...|+++||+..| +
T Consensus 22 f~~~G~-~~~s~~~IA~~aG-v 41 (203)
T 3cdl_A 22 FGDRGF-EITSMDRIAARAE-V 41 (203)
T ss_dssp HHHHCT-TTCCHHHHHHHTT-S
T ss_pred HHHcCc-hhcCHHHHHHHhC-C
Confidence 455542 5789999999999 8
No 432
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=39.23 E-value=26 Score=21.02 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=16.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.++|..|||+.++ + .+..+.
T Consensus 40 ~g~s~~EIA~~lg-i----S~~tV~ 59 (113)
T 1xsv_A 40 EDYSLSEIADTFN-V----SRQAVY 59 (113)
T ss_dssp SCCCHHHHHHHTT-C----CHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHH
Confidence 4799999999999 9 665443
No 433
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=39.23 E-value=56 Score=19.95 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=36.6
Q ss_pred HHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 26 MKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 26 L~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
.+..++--|+.-..+. +.++.++--..++ + |+....||..+|+..|.+..
T Consensus 58 ~YL~iK~~Li~E~~k~---g~lkk~dA~~l~k-I----D~~K~~rIydff~~~GWi~~ 107 (108)
T 2cuj_A 58 AYLEYKSALLNECHKQ---GGLRLAQARALIK-I----DVNKTRKIYDFLIREGYITK 107 (108)
T ss_dssp HHHHHHHHHHHHHHHS---SCCCHHHHHHHHT-S----CHHHHHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHHHHHHc---CCCcHHHHHHHhc-c----cHHHHHHHHHHHHHcCCCCC
Confidence 3444444445444443 5688888777788 9 99999999999999998853
No 434
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=39.16 E-value=22 Score=20.14 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=19.8
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+..|+..+. .++|..|||+.++ + .+..+.
T Consensus 34 e~~vl~l~~-----~g~s~~eIA~~l~-i----s~~tV~ 62 (91)
T 2rnj_A 34 EMEILLLIA-----KGYSNQEIASASH-I----TIKTVK 62 (91)
T ss_dssp HHHHHHHHH-----TTCCTTHHHHHHT-C----CHHHHH
T ss_pred HHHHHHHHH-----cCCCHHHHHHHHC-c----CHHHHH
Confidence 344555543 3689999999999 8 665543
No 435
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=39.12 E-value=34 Score=20.28 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=23.8
Q ss_pred hChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHH
Q 045477 32 LGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGL 74 (89)
Q Consensus 32 LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~ 74 (89)
+.|.+.+.+. +..+..++|...| + .+..|+|+++.
T Consensus 14 ~~iv~~~~~~---g~~~~~~~A~~~g-v----s~stl~~~~~~ 48 (131)
T 1hlv_A 14 SRIIQEVEEN---PDLRKGEIARRFN-I----PPSTLSTILKN 48 (131)
T ss_dssp HHHHHHHHHC---TTSCHHHHHHHHT-C----CHHHHHHHHHT
T ss_pred HHHHHHHHHC---CCCcHHHHHHHhC-C----CHHHHHHHHhc
Confidence 3444444332 3456669999999 9 88888888864
No 436
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=38.99 E-value=22 Score=24.52 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=22.9
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHh
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLA 76 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~ 76 (89)
.|+|.++||+.++ . +..-+..+|..|.
T Consensus 29 epvs~~~La~~l~-~----~~~~v~~~l~~L~ 55 (219)
T 2z99_A 29 TPVTADALAAATE-Q----PVYRVAAKLQLMA 55 (219)
T ss_dssp SCBCHHHHHHHHT-S----CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC-c----CHHHHHHHHHHHH
Confidence 7999999999999 8 7777777777664
No 437
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=38.94 E-value=31 Score=19.61 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=15.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
.++|..++|..+| + .+..+.++.
T Consensus 13 ~gltq~~lA~~~g-i----s~~~i~~~e 35 (111)
T 1b0n_A 13 KGYSLSELAEKAG-V----AKSYLSSIE 35 (111)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 4578888888888 7 555555544
No 438
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=38.92 E-value=14 Score=22.21 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=19.8
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+.+||++.| + ....+++
T Consensus 16 l~~~~G~-~~~t~~~Ia~~ag-v----s~~t~Y~ 43 (170)
T 3egq_A 16 LYMKKPP-HEVSIEEIAREAK-V----SKSLIFY 43 (170)
T ss_dssp HHTTSCG-GGCCHHHHHHHHT-S----CHHHHHH
T ss_pred HHHhcCC-ccCcHHHHHHHhC-C----CchhHHH
Confidence 3555442 4689999999999 9 6655554
No 439
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=38.90 E-value=27 Score=21.64 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=15.8
Q ss_pred HHhcCCCCCCCHHHHHhhCCCC
Q 045477 38 IAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.+.|- ...|+++||++.| +
T Consensus 22 f~~~G~-~~~t~~~Ia~~Ag-v 41 (204)
T 3anp_C 22 FRNRGF-QETTATEIAKAAH-V 41 (204)
T ss_dssp HHHHCT-TTCCHHHHHHHHT-S
T ss_pred HHHcCc-ccccHHHHHHHcC-C
Confidence 455542 5789999999999 9
No 440
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=38.86 E-value=14 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=20.1
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
...|..|||+..| + ....+.|+|+
T Consensus 8 ~~~Ti~diA~~aG-V----S~~TVSrvLn 31 (366)
T 3h5t_A 8 QYGTLASIAAKLG-I----SRTTVSNAYN 31 (366)
T ss_dssp CTTHHHHHHHHHT-S----CHHHHHHHHH
T ss_pred CCCCHHHHHHHhC-C----CHHHHHHHHC
Confidence 5679999999999 9 7777877775
No 441
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=38.77 E-value=17 Score=24.96 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=16.9
Q ss_pred CCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 47 LSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 47 ~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
.|..|||+..| + ....+.|+|+
T Consensus 1 ~ti~diA~~ag-V----S~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRAN-V----STTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHT-S----CHHHHHHHHH
T ss_pred CCHHHHHHHHC-C----CHHHHHHHHc
Confidence 37788888888 8 7777777775
No 442
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=38.66 E-value=27 Score=22.23 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=20.0
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+.+||+..| + ....+++
T Consensus 26 lf~~~G~-~~~s~~~IA~~AG-v----s~~tlY~ 53 (208)
T 3v6g_A 26 VIARQGL-GGLSHRRVAAEAN-V----PVGSTTY 53 (208)
T ss_dssp HHHHHCT-TCCCHHHHHHHHT-S----CHHHHHH
T ss_pred HHHHhCc-ccCCHHHHHHHhC-C----CchhHHH
Confidence 3555553 5789999999999 9 6655443
No 443
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=38.65 E-value=29 Score=21.53 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=18.8
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.|= ...|+++||+..| + .+..++
T Consensus 23 f~~~G~-~~~s~~~IA~~aG-v----s~gtlY 48 (194)
T 2nx4_A 23 IAARGI-EAANMRDIATEAG-Y----TNGALS 48 (194)
T ss_dssp HHHHCT-TTCCHHHHHHHHT-C----CHHHHH
T ss_pred HHhcCc-ccCCHHHHHHHhC-C----CcchHH
Confidence 455542 5789999999999 9 555444
No 444
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=38.58 E-value=20 Score=22.45 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=19.3
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ..+|+.+||++.| + ....+++
T Consensus 16 f~~~G~-~~~s~~~IA~~Ag-v----s~~t~Y~ 42 (212)
T 3rh2_A 16 FNEHGE-RTITTNHIAAHLD-I----SPGNLYY 42 (212)
T ss_dssp HHHHCG-GGCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHcCc-ccCCHHHHHHHhC-C----CHHHHHH
Confidence 455542 5689999999999 9 6655443
No 445
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=38.49 E-value=40 Score=19.58 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=16.3
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..++|+.+| + .+..+.|+.
T Consensus 40 ~glsq~~lA~~~g-i----s~~~is~~E 62 (117)
T 3f52_A 40 KGVTLRELAEASR-V----SPGYLSELE 62 (117)
T ss_dssp HTCCHHHHHHHTT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 3588889999888 7 555555544
No 446
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=38.47 E-value=28 Score=21.76 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=23.7
Q ss_pred HHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 25 TMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 25 aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.|.+|.++ +.+.|= ...|+++||+..| + ....+++
T Consensus 16 Il~aA~~l-----F~~~Gy-~~ts~~~IA~~aG-v----sk~tlY~ 50 (202)
T 2i10_A 16 ALQTAMEL-----FWRQGY-EGTSITDLTKALG-I----NPPSLYA 50 (202)
T ss_dssp HHHHHHHH-----HHHHTT-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHHHHH-----HHHhCc-ccCCHHHHHHHhC-C----ChHHHHH
Confidence 45555443 445542 5789999999999 9 6666654
No 447
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=38.47 E-value=35 Score=21.15 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=20.0
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..|+.+||+..| + ....+++
T Consensus 25 lf~~~G~--~~t~~~IA~~ag-v----s~~tlY~ 51 (196)
T 2qwt_A 25 TFAAEGL--GVPMDEIARRAG-V----GAGTVYR 51 (196)
T ss_dssp HHHHTCT--TSCHHHHHHHTT-S----CHHHHHH
T ss_pred HHHhcCC--CCCHHHHHHHhC-C----CHHHHHH
Confidence 4666662 589999999999 9 6655543
No 448
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=38.27 E-value=12 Score=22.82 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=15.9
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCC
Q 045477 37 IIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
.+.+.|- ..+|+.+||++.| +
T Consensus 20 l~~~~G~-~~~t~~~Ia~~ag-v 40 (183)
T 1zk8_A 20 IADANGV-QEVTLASLAQTLG-V 40 (183)
T ss_dssp HHHHHCG-GGCCHHHHHHHHT-S
T ss_pred HHHhcCc-cccCHHHHHHHcC-C
Confidence 3555442 5689999999999 8
No 449
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=38.24 E-value=12 Score=24.36 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
.-+|+.|.|+.++ + ....+++++|
T Consensus 30 ~~LTv~EVAe~Lg-V----s~srV~~LIr 53 (148)
T 2kfs_A 30 PTYDLPRVAELLG-V----PVSKVAQQLR 53 (148)
T ss_dssp CEEEHHHHHHHHT-C----CHHHHHHHHH
T ss_pred ceEcHHHHHHHhC-C----CHHHHHHHHH
Confidence 5689999999999 9 8888888876
No 450
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=38.20 E-value=29 Score=21.73 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=19.7
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ...|+++||+..| + ....+++
T Consensus 25 f~~~G~-~~ts~~~IA~~aG-v----sk~tlY~ 51 (211)
T 3bhq_A 25 FISKGY-DGTSMEEIATKAG-A----SKQTVYK 51 (211)
T ss_dssp HHHHCS-TTCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHhCc-ccCCHHHHHHHhC-C----CHHHHHH
Confidence 455542 5789999999999 9 6655553
No 451
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=37.93 E-value=20 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=19.6
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ...|+++||+..| + ....+++
T Consensus 28 f~~~G~-~~~s~~~IA~~ag-v----s~~t~Y~ 54 (221)
T 3c2b_A 28 LVEGGE-KALTTSGLARAAN-C----SKESLYK 54 (221)
T ss_dssp HHHHCG-GGCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHhCCc-ccCCHHHHHHHhC-C----CHHHHHH
Confidence 455442 5689999999999 9 6665554
No 452
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=37.83 E-value=21 Score=22.55 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=20.0
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+++||++.| + ....++|
T Consensus 34 lf~e~G~-~~~s~~~IA~~AG-V----sk~tlY~ 61 (207)
T 3bjb_A 34 LATEKEL-ARVQMHEVAKRAG-V----AIGTLYR 61 (207)
T ss_dssp HHHHSCG-GGCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHcCc-ccCCHHHHHHHhC-C----CHHHHHH
Confidence 3555542 4689999999999 9 6655554
No 453
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=37.65 E-value=23 Score=22.17 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=15.9
Q ss_pred HHhcCCCCCCCHHHHHhhCCCC
Q 045477 38 IAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.+.|- ...|+++||+..| +
T Consensus 27 f~~~G~-~~~s~~~IA~~ag-v 46 (199)
T 3crj_A 27 LREHGY-ADLTIQRIADEYG-K 46 (199)
T ss_dssp HHHHTT-TTCCHHHHHHHHT-S
T ss_pred HHHcCc-ccCCHHHHHHHhC-C
Confidence 555542 5799999999999 8
No 454
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=37.60 E-value=11 Score=20.39 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=18.7
Q ss_pred CCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 47 LSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 47 ~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
+|..|+|+.+| + .+..|+|..+
T Consensus 3 lt~~e~a~~Lg-v----S~~Tl~rw~~ 24 (68)
T 1j9i_A 3 VNKKQLADIFG-A----SIRTIQNWQE 24 (68)
T ss_dssp EEHHHHHHHTT-C----CHHHHHHHTT
T ss_pred cCHHHHHHHHC-c----CHHHHHHHHH
Confidence 57899999999 9 8888888765
No 455
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=37.52 E-value=30 Score=21.51 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=16.0
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCC
Q 045477 37 IIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
.+.+.|- ...|+++||+..| +
T Consensus 22 lf~~~G~-~~~s~~~Ia~~Ag-v 42 (197)
T 2f07_A 22 VISEKGL-DKASISDIVKKAG-T 42 (197)
T ss_dssp HHHHHCT-TTCCHHHHHHHHT-S
T ss_pred HHHHhCc-ccCCHHHHHHHhC-C
Confidence 3555542 5789999999999 8
No 456
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=37.44 E-value=21 Score=20.74 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
.++|..+||..+| + .+..+.++.
T Consensus 23 ~glsq~~lA~~~g-i----s~~~is~~e 45 (113)
T 2eby_A 23 LDLKINELAELLH-V----HRNSVSALI 45 (113)
T ss_dssp TTCCHHHHHHHHT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 5789999999998 8 666666554
No 457
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=37.30 E-value=28 Score=22.84 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=22.0
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRI 71 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~Rl 71 (89)
+.+.+.|- ..+|+.+||+..| + ....+++-
T Consensus 59 ~lf~e~G~-~~~Ti~~IA~~AG-v----s~~t~Y~y 88 (260)
T 2of7_A 59 GLIRQQGY-EATTVEQIAERAE-V----SPSTVLRY 88 (260)
T ss_dssp HHHHHHCS-TTCCHHHHHHHHT-S----CHHHHHHH
T ss_pred HHHHHhCc-ccccHHHHHHHhC-C----ChHHHHHH
Confidence 34566553 5799999999999 9 77666653
No 458
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=37.23 E-value=25 Score=22.66 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=16.5
Q ss_pred CCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 46 KLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 46 ~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+|+.+||+++| + .+..+++
T Consensus 29 ~~s~~~IA~~aG-v----s~~tlY~ 48 (213)
T 2g7g_A 29 DFRMPDLARHLN-V----QVSSIYH 48 (213)
T ss_dssp SCCHHHHHHHTT-S----CHHHHHT
T ss_pred CCCHHHHHHHhC-C----CHhHHHH
Confidence 899999999999 9 6665554
No 459
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=37.22 E-value=32 Score=21.33 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=28.1
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhcc
Q 045477 34 LFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASY 78 (89)
Q Consensus 34 Ifd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~ 78 (89)
+|.+|.+. +.+|+.+|-.... + +|+-.-.+.|++|..+..
T Consensus 20 l~kiLq~K---~Eit~eDIlaqfe-I-S~s~Ay~I~~~lk~iCE~ 59 (118)
T 2cmx_A 20 MYKILEKK---GELTLEDILAQFE-I-SVPSAYNIQRALKAICER 59 (118)
T ss_dssp HHHHHHHH---SEECHHHHHHHHC-C-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CcCcHHHHHHHhc-c-chhhhhHHHHHHHHHHHh
Confidence 47788764 6899999999999 8 222233467777777653
No 460
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=37.01 E-value=22 Score=24.81 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhc
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLAS 77 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s 77 (89)
...+..+|++.+. . ||.+..||||+.-+
T Consensus 43 ~~~~~~~la~~I~-~----Dp~Ls~~lLr~aNS 70 (305)
T 3hc1_A 43 PDVAIDEVADLLL-Q----DQVLTARVVHLANS 70 (305)
T ss_dssp TTCCHHHHHHHHT-T----CHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHH-H----CHHHHHHHHHHhcc
Confidence 4579999999999 9 99999999998654
No 461
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=36.92 E-value=37 Score=21.75 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=29.3
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhC-----CCCCCCCCcchHHHHHHHHhc
Q 045477 33 GLFEIIAKAGPGAKLSASEIAAQL-----PATKNKDAPTMLDRILGLLAS 77 (89)
Q Consensus 33 gIfd~l~~~g~~~~~t~~eLA~~~-----~~~~~~~d~~~l~RlLR~L~s 77 (89)
.|-++|.++ +-.|.+||++.+ + + ....++|-|+-|-.
T Consensus 9 ~I~~li~~~---~~~tq~eL~~~L~~~G~~-V----tqaTisRDL~eL~~ 50 (149)
T 1b4a_A 9 KIREIIMSN---DIETQDELVDRLREAGFN-V----TQATVSRDIKEMQL 50 (149)
T ss_dssp HHHHHHHHS---CCCSHHHHHHHHHHTTCC-C----CHHHHHHHHHHTTC
T ss_pred HHHHHHHHC---CCccHHHHHHHHHHcCCC-c----CHHHHHHHHHHcCC
Confidence 456777775 578999999999 7 7 77889999887743
No 462
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=36.90 E-value=22 Score=20.64 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=17.8
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
.++|-.++|..+| + .+..+.|+.+
T Consensus 21 ~glsq~~lA~~~g-i----s~~~i~~~e~ 44 (114)
T 3op9_A 21 HGLKNHQIAELLN-V----QTRTVAYYMS 44 (114)
T ss_dssp HTCCHHHHHHHHT-S----CHHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHHc
Confidence 4689999999998 8 6666665543
No 463
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=36.74 E-value=22 Score=22.24 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=20.1
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.+.|- ..+|+.+||+..| + ....+++
T Consensus 34 ~lf~~~G~-~~~t~~~IA~~ag-v----s~~t~Y~ 62 (214)
T 2zb9_A 34 ELLLTEGT-AQLTFERVARVSG-V----SKTTLYK 62 (214)
T ss_dssp HHHHHHCG-GGCCHHHHHHHHC-C----CHHHHHH
T ss_pred HHHHHhCc-ccCCHHHHHHHHC-C----CHHHHHH
Confidence 34555542 4689999999999 9 6655443
No 464
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=36.61 E-value=22 Score=22.84 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=20.2
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.+.|- ..+|+.+||++.| + ....+++
T Consensus 24 ~l~~~~G~-~~~tv~~IA~~ag-v----s~~t~Y~ 52 (231)
T 2qib_A 24 DLFSRRSP-DEVSIDEIASAAG-I----SRPLVYH 52 (231)
T ss_dssp HHHHHSCG-GGCCHHHHHHHHT-S----CHHHHHH
T ss_pred HHHHHcCc-hhcCHHHHHHHhC-C----CHHHHHH
Confidence 34555542 4789999999999 9 6655443
No 465
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=36.43 E-value=23 Score=19.19 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=16.1
Q ss_pred CHHHHHhhCCCCCCCCCcchHHHHHH
Q 045477 48 SASEIAAQLPATKNKDAPTMLDRILG 73 (89)
Q Consensus 48 t~~eLA~~~~~~~~~~d~~~l~RlLR 73 (89)
|-.+||+.+| + .+..+.++.+
T Consensus 13 sq~~lA~~lg-v----s~~~is~~e~ 33 (79)
T 3bd1_A 13 SVSALAASLG-V----RQSAISNWRA 33 (79)
T ss_dssp SHHHHHHHHT-C----CHHHHHHHHH
T ss_pred CHHHHHHHHC-C----CHHHHHHHHH
Confidence 8899999999 8 6666666554
No 466
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=36.33 E-value=25 Score=22.13 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=15.8
Q ss_pred HHhcCCCCCCCHHHHHhhCCCC
Q 045477 38 IAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.+.|- ...|+++||+..| +
T Consensus 24 f~~~G~-~~~s~~~IA~~aG-v 43 (219)
T 2w53_A 24 FHEHGV-ARTTLEMIGARAG-Y 43 (219)
T ss_dssp HHHHCT-TTCCHHHHHHHHT-S
T ss_pred HHHhCc-ccCCHHHHHHHhC-C
Confidence 455552 5789999999999 8
No 467
>1zrv_A Spinigerin; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic} PDB: 1zrw_A
Probab=36.21 E-value=17 Score=16.57 Aligned_cols=9 Identities=44% Similarity=0.552 Sum_probs=6.5
Q ss_pred HHHHHHHhc
Q 045477 69 DRILGLLAS 77 (89)
Q Consensus 69 ~RlLR~L~s 77 (89)
-|+||.|+.
T Consensus 16 lrimrlltr 24 (26)
T 1zrv_A 16 LRIMRLLTR 24 (26)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 378888864
No 468
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=36.19 E-value=7.5 Score=30.06 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccC-ceeee
Q 045477 30 INLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYG-IVECS 84 (89)
Q Consensus 30 v~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~g-i~~e~ 84 (89)
++..|...|.+.+ ++++..+||+.++ . ++..+.+.+..|.+.| ++.-.
T Consensus 6 ~~~~iL~~l~~~~--~~~~~~~~a~~~~-~----~~~~v~~~~~~L~~~~~~v~~~ 54 (508)
T 3l4g_A 6 VAELLLRRLEASD--GGLDSAELAAELG-M----EHQAVVGAVKSLQALGEVIEAE 54 (508)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHhcC--CCcCHHHHHHHcC-C----CHHHHHHHHHHHHhCCCeEEEE
Confidence 4455666676532 3789999999999 9 9999999999999998 77633
No 469
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=36.17 E-value=39 Score=21.62 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=20.0
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+.+||+..| + ....+++
T Consensus 19 l~~~~G~-~~~tv~~Ia~~ag-v----s~~t~y~ 46 (213)
T 3ni7_A 19 LAAHTSW-EAVRLYDIAARLA-V----SLDEIRL 46 (213)
T ss_dssp HHHHSCS-TTCCHHHHHHHTT-S----CHHHHHH
T ss_pred HHHHcCc-cccCHHHHHHHhC-C----CHHHHHH
Confidence 3555552 6799999999999 9 5555443
No 470
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=36.17 E-value=32 Score=21.42 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=19.3
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ...|+.+||+..| + ....+++
T Consensus 23 f~~~G~-~~~s~~~IA~~aG-v----s~~t~Y~ 49 (210)
T 3vib_A 23 FYRKGI-ARTSLNEIAQAAG-V----TRDALYW 49 (210)
T ss_dssp HHHHCT-TTCCHHHHHHHHT-S----CHHHHHH
T ss_pred HHHhCc-ccCCHHHHHHHHC-c----CHHHHHH
Confidence 455542 5789999999999 9 5555443
No 471
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=35.99 E-value=31 Score=19.48 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=16.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcch----HHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTM----LDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~----l~RlL 72 (89)
.++|-.|+|..+| + ++.. +.++.
T Consensus 13 ~glsq~~lA~~~g-i----s~~~~~~~is~~E 39 (98)
T 3lfp_A 13 AGISQEKLGVLAG-I----DEASASARMNQYE 39 (98)
T ss_dssp HTCCHHHHHHHTT-C----CHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhC-C----CcchhhhHHHHHH
Confidence 4688899999988 8 6555 55544
No 472
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=35.97 E-value=18 Score=22.23 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=15.6
Q ss_pred HHhcCCCCCCCHHHHHhhCCCC
Q 045477 38 IAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.+.|- ...|+.+||+..| +
T Consensus 20 f~~~G~-~~~s~~~IA~~aG-v 39 (178)
T 4hku_A 20 IYEKGM-EKTTLYDIASNLN-V 39 (178)
T ss_dssp HHHHCG-GGCCHHHHHHHTT-S
T ss_pred HHHhCc-ccccHHHHHHHhC-c
Confidence 455542 5789999999999 9
No 473
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=35.94 E-value=20 Score=23.70 Aligned_cols=17 Identities=35% Similarity=0.557 Sum_probs=16.1
Q ss_pred CcchHHHHHHHHhccCc
Q 045477 64 APTMLDRILGLLASYGI 80 (89)
Q Consensus 64 d~~~l~RlLR~L~s~gi 80 (89)
||..|.|+..-|++.||
T Consensus 142 Dp~YL~rV~~EL~akGI 158 (159)
T 3pg6_A 142 DPSYLKRVKEELKAKGI 158 (159)
T ss_dssp CTTHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHhCC
Confidence 89999999999999997
No 474
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=35.91 E-value=26 Score=21.17 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.++|..|||+.+| + .+..+.
T Consensus 37 ~g~s~~EIA~~lg-i----S~~tV~ 56 (113)
T 1s7o_A 37 DDYSLAEIADEFG-V----SRQAVY 56 (113)
T ss_dssp TCCCHHHHHHHHT-C----CHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHH
Confidence 4689999999999 9 665544
No 475
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=35.84 E-value=20 Score=22.51 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=19.7
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- . .|+.+||++.| + ....+++
T Consensus 24 lf~~~G~-~-~s~~~IA~~ag-v----s~~tiY~ 50 (224)
T 1t33_A 24 QFGEYGL-H-ATTRDIAALAG-Q----NIAAITY 50 (224)
T ss_dssp HHHHHGG-G-SCHHHHHHHHT-S----CHHHHHH
T ss_pred HHHHhCc-c-ccHHHHHHHhC-C----CHHHHHH
Confidence 3555553 6 99999999999 9 6655554
No 476
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=35.82 E-value=39 Score=20.31 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceeeec
Q 045477 21 VLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSV 85 (89)
Q Consensus 21 ~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e~~ 85 (89)
..+.++.-+++ .|-+++.++ +++|++|+-..+| . .....--||++|=..|+-...+
T Consensus 59 ~~~~~~~~~~~-~l~~~~~~~---~~it~ae~Rd~lg-~----sRK~ai~lLE~~Dr~g~TrR~g 114 (121)
T 2pjp_A 59 YRNDRIVEFAN-MIRDLDQEC---GSTCAADFRDRLG-V----GRKLAIQILEYFDRIGFTRRRG 114 (121)
T ss_dssp EEHHHHHHHHH-HHHHHHHHH---SSEEHHHHHHHHT-S----CHHHHHHHHHHHHHHTSEEEET
T ss_pred ECHHHHHHHHH-HHHHHHHHC---CCccHHHHHHHHC-C----cHHHHHHHHHHHhhcCCeEeeC
Confidence 33444444444 355666665 6899999999999 8 7777778999999999876553
No 477
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=35.79 E-value=22 Score=21.77 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=12.7
Q ss_pred CCCCHHHHHhhCCCC
Q 045477 45 AKLSASEIAAQLPAT 59 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~ 59 (89)
.++|.+|+|+++| +
T Consensus 15 ~gltq~elA~~~g-i 28 (130)
T 3fym_A 15 LGMTLTELEQRTG-I 28 (130)
T ss_dssp TTCCHHHHHHHHC-C
T ss_pred cCCCHHHHHHHHC-c
Confidence 5799999999999 8
No 478
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=35.69 E-value=24 Score=20.87 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=17.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
..+|..|||+.+| + .+..+.|+.
T Consensus 35 ~gltq~elA~~~g-i----s~~~is~~E 57 (111)
T 3mlf_A 35 YGLTQKELGDLFK-V----SSRTIQNME 57 (111)
T ss_dssp TTCCHHHHHHHHT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHHC-c----CHHHHHHHH
Confidence 5689999999998 8 565555544
No 479
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=35.50 E-value=29 Score=22.25 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=18.4
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRIL 72 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlL 72 (89)
.++|..|||+.+| + .+..+.+.+
T Consensus 202 ~g~s~~EIA~~lg-i----s~~~V~~~~ 224 (239)
T 1rp3_A 202 EELPAKEVAKILE-T----SVSRVSQLK 224 (239)
T ss_dssp SCCCHHHHHHHTT-S----CHHHHHHHH
T ss_pred cCCCHHHHHHHhC-C----CHHHHHHHH
Confidence 5799999999999 9 776655444
No 480
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=35.48 E-value=20 Score=22.37 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=16.2
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCC
Q 045477 37 IIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
.+.+.|- ...|+.+||+..| +
T Consensus 23 lf~~~G~-~~~s~~~IA~~ag-v 43 (212)
T 2ras_A 23 IVEERGG-AGLTLSELAARAG-I 43 (212)
T ss_dssp HHHHHTS-SCCCHHHHHHHHT-S
T ss_pred HHHHhCc-ccCcHHHHHHHhC-C
Confidence 3555542 5799999999999 8
No 481
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=35.44 E-value=32 Score=22.29 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=20.0
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+.+||++.| + ....+++
T Consensus 35 lf~~~G~-~~~s~~~IA~~ag-v----s~~tlY~ 62 (231)
T 2zcx_A 35 LGTERGI-REITLTDIAATVG-M----HKSALLR 62 (231)
T ss_dssp HHHHHCS-TTCCHHHHHHHHT-S----CHHHHHH
T ss_pred HHHhCCc-ccCCHHHHHHHhC-C----CHHHHHH
Confidence 3555542 5799999999999 9 6655443
No 482
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.41 E-value=23 Score=22.12 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=18.3
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.|- ...|+++||+..| + ....++
T Consensus 22 f~~~G~-~~~s~~~IA~~AG-v----s~gtlY 47 (203)
T 2np5_A 22 AAESGL-EGASVREVAKRAG-V----SIGAVQ 47 (203)
T ss_dssp HHHHCG-GGCCHHHHHHHHT-C----CHHHHH
T ss_pred HHHhCh-hhccHHHHHHHhC-C----CHHHHH
Confidence 555542 5689999999999 8 554443
No 483
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=35.35 E-value=24 Score=22.66 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=20.4
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ..+|+.+||+..| + ....+++
T Consensus 56 lf~e~G~-~~~t~~~IA~~aG-v----s~~tlY~ 83 (236)
T 3q0w_A 56 LLEDRPL-ADISVDDLAKGAG-I----SRPTFYF 83 (236)
T ss_dssp HHHHSCG-GGCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHcCc-ccCCHHHHHHHhC-C----cHHHHHH
Confidence 3565542 4799999999999 9 6665554
No 484
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=35.32 E-value=23 Score=22.53 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.|- ..+|+++||+..| + ....++
T Consensus 41 f~~~G~-~~~t~~~IA~~aG-v----s~~tlY 66 (217)
T 3hta_A 41 VGQKGI-AGLSHRTVAAEAD-V----PLGSTT 66 (217)
T ss_dssp HHHHTG-GGCCHHHHHHHHT-C----CHHHHH
T ss_pred HHHcCc-ccCCHHHHHHHcC-C----Ccchhh
Confidence 555442 4689999999999 9 555544
No 485
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=35.25 E-value=50 Score=20.68 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=35.3
Q ss_pred HhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhcc---Cceeee
Q 045477 31 NLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASY---GIVECS 84 (89)
Q Consensus 31 ~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~---gi~~e~ 84 (89)
.+.+|..+++.| |...-|+.++ + .+..+.|.++.|-.. .+|..+
T Consensus 28 ~L~~f~av~e~g-----S~s~AA~~L~-i----SqsavS~~I~~LE~~lG~~Lf~R~ 74 (135)
T 2ijl_A 28 KVELMQLIAETG-----SISAAGRAMD-M----SYRRAWLLVDALNHMFRQPVICSQ 74 (135)
T ss_dssp HHHHHHHHHHHS-----CHHHHHHHTT-C----CHHHHHHHHHHHHHHBSSCSEEEC
T ss_pred HHHHHHHHHHhC-----CHHHHHHHHC-c----CHHHHHHHHHHHHHHHCCeeEEec
Confidence 467888898865 6888899999 9 888999999988764 566654
No 486
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=35.24 E-value=29 Score=21.42 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=13.0
Q ss_pred CCCCHHHHHhhCCCC
Q 045477 45 AKLSASEIAAQLPAT 59 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~ 59 (89)
.++|.+|||+.+| +
T Consensus 108 ~g~s~~EIA~~lg-i 121 (157)
T 2lfw_A 108 EGFSPEDAAYLIE-V 121 (157)
T ss_dssp SCCCHHHHHHTTT-S
T ss_pred cCCCHHHHHHHHC-c
Confidence 5799999999999 8
No 487
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=35.23 E-value=17 Score=22.50 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=16.0
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCC
Q 045477 37 IIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
.+.+.|- ..+|+++||++.| +
T Consensus 25 lf~~~G~-~~~tv~~Ia~~ag-v 45 (195)
T 2iu5_A 25 LMQSNAY-HQISVSDIMQTAK-I 45 (195)
T ss_dssp HHHHSCG-GGCCHHHHHHHHT-S
T ss_pred HHHhCCC-CeeCHHHHHHHhC-C
Confidence 3555442 4689999999999 9
No 488
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=35.07 E-value=23 Score=22.88 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=19.8
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.|- ..+|+.+||++.| + .+..+++
T Consensus 15 ~~~~G~-~~~s~~~IA~~aG-v----s~~tlY~ 41 (209)
T 3bqy_A 15 LNESGL-DTLTMRRLAQAMD-V----QAGALYR 41 (209)
T ss_dssp HHHHCG-GGCCHHHHHHHHT-S----CHHHHHH
T ss_pred HHhCCc-ccCCHHHHHHHhC-C----CcchHHh
Confidence 444442 5789999999999 9 6666654
No 489
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=35.06 E-value=30 Score=22.23 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=18.9
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.|= ...|+.+||+..| + ....++
T Consensus 20 F~e~G~-~~ts~~~IA~~AG-v----s~~tlY 45 (235)
T 2fbq_A 20 FAEKGF-AETSLRLITSKAG-V----NLAAVN 45 (235)
T ss_dssp HHHHCS-TTCCHHHHHHHHT-S----CHHHHH
T ss_pred HHHcCc-cccCHHHHHHHhC-C----CHHHHH
Confidence 455542 5789999999999 9 555444
No 490
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.87 E-value=31 Score=21.46 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=16.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
.++|.+|||+.+| + .+..+.
T Consensus 155 ~g~s~~EIA~~lg-i----s~~tV~ 174 (194)
T 1or7_A 155 DGLSYEEIAAIMD-C----PVGTVR 174 (194)
T ss_dssp TCCCHHHHHHHTT-S----CHHHHH
T ss_pred cCCCHHHHHHHHC-C----CHHHHH
Confidence 4799999999999 9 665543
No 491
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=34.76 E-value=40 Score=24.27 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=20.0
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCcee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVE 82 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~ 82 (89)
+.+|++||++.|+ . ...-|+..|..+|++.
T Consensus 213 ~~isi~~is~~T~-i-------~~~DIi~tL~~l~~l~ 242 (284)
T 2ozu_A 213 KQISIKKLSKLTG-I-------CPQDITSTLHHLRMLD 242 (284)
T ss_dssp ---CHHHHHHHHC-B-------CHHHHHHHHHHTTCC-
T ss_pred CcEeHHHHHHHhC-C-------CHHHHHHHHHHCCCEE
Confidence 6899999999999 8 3344666666777765
No 492
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=34.73 E-value=24 Score=28.09 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=30.2
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHHh--ccCceee
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLLA--SYGIVEC 83 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~--s~gi~~e 83 (89)
..+|.+||++.++ . ++..|.|.|..|+ ..+++.+
T Consensus 606 ~~lt~~ei~~~t~-i----~~~~l~r~L~sL~~~k~~vL~~ 641 (759)
T 2hye_C 606 DGFSFEEIKMATG-I----EDSELRRTLQSLACGKARVLIK 641 (759)
T ss_dssp CCEEHHHHHHHTC-C----CHHHHHHHHHTTTTTTTCSEEE
T ss_pred CCcCHHHHHHHHC-c----CHHHHHHHHHHHHccCCceeec
Confidence 6899999999999 9 8889999999998 4778875
No 493
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=34.72 E-value=34 Score=22.93 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=20.9
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
+.+.+.|- ..+|+.+||++.| + ....+++
T Consensus 52 ~lf~e~G~-~~~S~~~IA~~AG-V----s~~tlY~ 80 (273)
T 3c07_A 52 RLFQERGY-DRTTMRAIAQEAG-V----SVGNAYY 80 (273)
T ss_dssp HHHHHTCS-TTCCHHHHHHHHT-S----CHHHHHH
T ss_pred HHHHhCCc-cccCHHHHHHHHC-C----CHHHHHH
Confidence 34566553 5789999999999 9 6655543
No 494
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=34.38 E-value=24 Score=22.17 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=18.2
Q ss_pred HHhcCCCCCCCHHHHHhhCCCCCCCCCcchHH
Q 045477 38 IAKAGPGAKLSASEIAAQLPATKNKDAPTMLD 69 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~ 69 (89)
+.+.|- ...|+++||++.| + ....++
T Consensus 21 f~~~Gy-~~~s~~~IA~~AG-v----s~gt~Y 46 (206)
T 1vi0_A 21 IAENGY-HQSQVSKIAKQAG-V----ADGTIY 46 (206)
T ss_dssp HHHHCG-GGCCHHHHHHHHT-S----CHHHHH
T ss_pred HHHhCc-ccCCHHHHHHHhC-C----ChhHHH
Confidence 444442 4689999999999 9 555444
No 495
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=33.84 E-value=26 Score=25.16 Aligned_cols=52 Identities=10% Similarity=0.219 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHhChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHHHHHHHhccCceee
Q 045477 19 GSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVEC 83 (89)
Q Consensus 19 ~~~~~~aL~~av~LgIfd~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L~s~gi~~e 83 (89)
+||....++...+.+= +.++...+|++||++.|+ . ...-|+..|..+|++..
T Consensus 190 ~YW~~~i~~~L~~~~~-----~~~~~~~isi~~is~~T~-i-------~~~Dii~tL~~l~~l~~ 241 (280)
T 2ou2_A 190 SYWSQTILEILMGLKS-----ESGERPQITINEISEITS-I-------KKEDVISTLQYLNLINY 241 (280)
T ss_dssp HHHHHHHHHHC----------------CCBHHHHHHHHC-B-------CHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHHHHHhccc-----ccCCCCceeHHHHHHHhC-C-------CHHHHHHHHHHCCcEEE
Confidence 5666555555443221 001113799999999999 8 33447777778888754
No 496
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=33.77 E-value=22 Score=23.12 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=16.6
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCC
Q 045477 36 EIIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 36 d~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.+.+.|- ..+|+.+||+..| +
T Consensus 57 ~lf~~~G~-~~~t~~~IA~~aG-v 78 (245)
T 3aqt_A 57 TLMAERGV-DNVGIAEITEGAN-I 78 (245)
T ss_dssp HHHHHHCG-GGCCHHHHHHHTT-S
T ss_pred HHHHhcCc-ccCcHHHHHHHhC-C
Confidence 34555542 4799999999999 9
No 497
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=33.67 E-value=26 Score=22.39 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=20.3
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCCCCCCCcchHHH
Q 045477 37 IIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDR 70 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~~~~~d~~~l~R 70 (89)
.+.+.|- ...|+.+||+..| + ....+++
T Consensus 52 lf~~~G~-~~~t~~~IA~~Ag-v----s~~t~Y~ 79 (225)
T 2id3_A 52 ALAADGF-DALDLGEIARRAG-V----GKTTVYR 79 (225)
T ss_dssp HHHHHCG-GGCCHHHHHHHHT-C----CHHHHHH
T ss_pred HHHHhCc-ccCCHHHHHHHHC-C----CHHHHHH
Confidence 3555542 5699999999999 9 6655554
No 498
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=33.64 E-value=19 Score=22.41 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=16.1
Q ss_pred HHHhcCCCCCCCHHHHHhhCCCC
Q 045477 37 IIAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 37 ~l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
.+.+.|- ...|+.+||+..| +
T Consensus 25 lf~~~G~-~~~t~~~IA~~ag-v 45 (217)
T 3nrg_A 25 EFAQNDY-DSVSINRITERAG-I 45 (217)
T ss_dssp HHHHSCG-GGCCHHHHHHHHT-C
T ss_pred HHHhcCc-ccCCHHHHHHHhC-C
Confidence 3555542 4689999999999 9
No 499
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=33.50 E-value=29 Score=21.59 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=15.8
Q ss_pred HHhcCCCCCCCHHHHHhhCCCC
Q 045477 38 IAKAGPGAKLSASEIAAQLPAT 59 (89)
Q Consensus 38 l~~~g~~~~~t~~eLA~~~~~~ 59 (89)
+.+.|= ...|+++||+..| +
T Consensus 25 f~~~Gy-~~ts~~~IA~~ag-v 44 (205)
T 1rkt_A 25 FKRKGF-ELTTMKDVVEESG-F 44 (205)
T ss_dssp HHHHCS-TTCCHHHHHHHHT-S
T ss_pred HHHcCc-ccCCHHHHHHHHC-C
Confidence 455542 5799999999999 9
No 500
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=33.40 E-value=30 Score=23.30 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.5
Q ss_pred CCCCHHHHHhhCCCCCCCCCcchHHHHHHHH
Q 045477 45 AKLSASEIAAQLPATKNKDAPTMLDRILGLL 75 (89)
Q Consensus 45 ~~~t~~eLA~~~~~~~~~~d~~~l~RlLR~L 75 (89)
.++|-.|||+.+| + ....+.|+++.-
T Consensus 23 ~g~tQ~eIA~~lG-i----Sr~~VSR~L~~A 48 (192)
T 1zx4_A 23 DGMSQKDIAAKEG-L----SQAKVTRALQAA 48 (192)
T ss_dssp TTCCHHHHHHHHT-C----CHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhC-c----CHHHHHHHHHHh
Confidence 3599999999999 9 888999988754
Done!