BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045478
(852 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 68 GLSGRHSMITSNPYVSVCL----SGA-TVAQTRVISNCENPFWDEHFCVPVAHSVVNLEF 122
GL+ + + S+PYV V L SG T QT+ I NP W+E V + F
Sbjct: 19 GLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILF 78
Query: 123 HVKD-NDILGAELIGVVQIPVEKILCGN 149
V D N + + +G V +P+ + N
Sbjct: 79 EVFDENRLTRDDFLGQVDVPLYPLPTEN 106
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 35.8 bits (81), Expect = 0.097, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 67 RGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKD 126
+GL + +S+PYV+V + G T +T+ I NP W+E+F +S ++ V D
Sbjct: 27 QGLQAKDKTGSSDPYVTVQV-GKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLD 85
Query: 127 ND 128
D
Sbjct: 86 ED 87
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 68 GLSGRHSMITSNPYVSVCLSG-----ATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEF 122
GL+ + + S+PYV V L T QT+ I NP W+E V L F
Sbjct: 31 GLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLF 90
Query: 123 HVKD-NDILGAELIGVVQIPV 142
V D N + + +G V +P+
Sbjct: 91 EVFDENRLTRDDFLGQVDVPL 111
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 77 TSNPYVSVCL--SGATVAQTRVISNCENPFWDEHFCVPVAHSVV---NLEFHVKDNDILG 131
TS+PYV V L +T+V NP ++E F V +S + L V D D
Sbjct: 39 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS 98
Query: 132 A-ELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
++IG ++P+ + G+ ++W + + + + + S++Y P
Sbjct: 99 KHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVP 147
>pdb|3HSI|A Chain A, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|B Chain B, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|C Chain C, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
Length = 458
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 703 HAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTS 762
H KG+ VDD Y+++ N+N R+ D E + Y P A+ + Q+ +
Sbjct: 364 HLKGVWVDDRYILLTGNNLNPRA--WRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKV 421
Query: 763 LWAEHLGTLEDTFREPQSLE-CMQRVNRIAGE 793
L +H LE+ + P+ ++ +++ RI +
Sbjct: 422 L--KHYTELEELNQYPEPVQKLLKKFARIKAD 451
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 78 SNPYVSVCLSGA------TVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKD-NDIL 130
S+PYV + L A + QT+ I NP W+E F V S L F V D N +
Sbjct: 42 SDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRLT 101
Query: 131 GAELIGVVQIPVEKI 145
+ +G V +P+ +
Sbjct: 102 RDDFLGQVDVPLSHL 116
>pdb|2P5P|A Chain A, Crystal Structure Analysis Of The West Nile Virus Envelope
(E) Protein Domain Iii
pdb|2P5P|B Chain B, Crystal Structure Analysis Of The West Nile Virus Envelope
(E) Protein Domain Iii
pdb|2P5P|C Chain C, Crystal Structure Analysis Of The West Nile Virus Envelope
(E) Protein Domain Iii
Length = 117
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 57 GHCRFPFKKTRGLS-----GRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCV 111
G C+ P L+ GR ++T NP+VSV A +V+ E PF D + V
Sbjct: 36 GPCKVPISSVASLNDLTPVGR--LVTVNPFVSV-----ATANAKVLIELEPPFGDSYIVV 88
Query: 112 PVAHSVVNLEFHVKDNDI 129
+N +H + I
Sbjct: 89 GRGEQQINHHWHKSGSSI 106
>pdb|1S6N|A Chain A, Nmr Structure Of Domain Iii Of The West Nile Virus
Envelope Protein, Strain 385-99
Length = 115
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 57 GHCRFPFKKTRGLS-----GRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCV 111
G C+ P L+ GR ++T NP+VSV A +V+ E PF D + V
Sbjct: 43 GPCKVPISSVASLNDLTPVGR--LVTVNPFVSVA-----TANAKVLIELEPPFGDSYIVV 95
Query: 112 PVAHSVVNLEFHVKDNDI 129
+N +H + I
Sbjct: 96 GRGEQQINHHWHKSGSSI 113
>pdb|1ZTX|E Chain E, West Nile Virus Envelope Protein Diii In Complex With
Neutralizing E16 Antibody Fab
Length = 108
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 57 GHCRFPFKKTRGLS-----GRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCV 111
G C+ P L+ GR ++T NP+VSV A +V+ E PF D + V
Sbjct: 41 GPCKVPISSVASLNDLTPVGR--LVTVNPFVSV-----ATANAKVLIELEPPFGDSYIVV 93
Query: 112 PVAHSVVNLEFH 123
+N +H
Sbjct: 94 GRGEQQINHHWH 105
>pdb|3I50|E Chain E, Crystal Structure Of The West Nile Virus Envelope
Glycoprotein In Complex With The E53 Antibody Fab
Length = 402
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 57 GHCRFPFKKTRGLS-----GRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCV 111
G C+ P L+ GR ++T NP+VSV A +V+ E PF D + V
Sbjct: 334 GPCKVPISSVASLNDLTPVGR--LVTVNPFVSV-----ATANAKVLIELEPPFGDSYIVV 386
Query: 112 PVAHSVVNLEFH 123
+N +H
Sbjct: 387 GRGEQQINHHWH 398
>pdb|2I69|A Chain A, Crystal Structure Of The West Nile Virus Envelope
Glycoprotein
Length = 403
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 57 GHCRFPFKKTRGLS-----GRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCV 111
G C+ P L+ GR ++T NP+VSV A +V+ E PF D + V
Sbjct: 334 GPCKVPISSVASLNDLTPVGR--LVTVNPFVSV-----ATANAKVLIELEPPFGDSYIVV 386
Query: 112 PVAHSVVNLEFH 123
+N +H
Sbjct: 387 GRGEQQINHHWH 398
>pdb|3IYW|A Chain A, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3IYW|B Chain B, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3IYW|C Chain C, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
Length = 403
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 57 GHCRFPFKKTRGLS-----GRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCV 111
G C+ P L+ GR ++T NP+VSV A +V+ E PF D + V
Sbjct: 334 GPCKVPISSVASLNDLTPVGR--LVTVNPFVSV-----ATANAKVLIELEPPFGDSYIVV 386
Query: 112 PVAHSVVNLEFH 123
+N +H
Sbjct: 387 GRGEQQINHHWH 398
>pdb|2OF6|A Chain A, Structure Of Immature West Nile Virus
pdb|2OF6|B Chain B, Structure Of Immature West Nile Virus
pdb|2OF6|C Chain C, Structure Of Immature West Nile Virus
pdb|3IXX|A Chain A, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXX|B Chain B, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXX|C Chain C, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3J0B|A Chain A, Cryo-Em Reconstruction Of West Nile Virus
pdb|3J0B|B Chain B, Cryo-Em Reconstruction Of West Nile Virus
pdb|3J0B|C Chain C, Cryo-Em Reconstruction Of West Nile Virus
Length = 400
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 57 GHCRFPFKKTRGLS-----GRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCV 111
G C+ P L+ GR ++T NP+VSV A +V+ E PF D + V
Sbjct: 334 GPCKVPISSVASLNDLTPVGR--LVTVNPFVSV-----ATANAKVLIELEPPFGDSYIVV 386
Query: 112 PVAHSVVNLEFH 123
+N +H
Sbjct: 387 GRGEQQINHHWH 398
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 67 RGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKD 126
+GL + +PYV + P W+E F V+ L+ + D
Sbjct: 20 KGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFD 79
Query: 127 NDILGAE--LIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIG 181
D+ G E +G IP+E + + P A + K+ + ++ V++ +KP G
Sbjct: 80 KDV-GTEDDAVGEATIPLEPVFVEGSIP---PTAYNVVKDEEYKGEIWVALSFKPSG 132
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 163 KNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDY----QGVPKTYFPLRKEGNLTLYQ-- 216
KN FP+ M+ + + IP+ GV Y +GV YF R++G+ +
Sbjct: 215 KNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVW 274
Query: 217 --DAHVPPGMLPEIALDGGKTFR 237
D H P + PE G +R
Sbjct: 275 PGDTHFPDMLNPEARKWFGDKYR 297
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 163 KNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDY----QGVPKTYFPLRKEGNLTLYQ-- 216
KN FP+ M+ + + IP+ GV Y +GV YF R++G+ +
Sbjct: 215 KNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVW 274
Query: 217 --DAHVPPGMLPEIALDGGKTFR 237
D H P + PE G +R
Sbjct: 275 PGDTHFPDMLNPEARKWFGDKYR 297
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 163 KNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDY----QGVPKTYFPLRKEGNLTLYQ-- 216
KN FP+ M+ + + IP+ GV Y +GV YF R++G+ +
Sbjct: 215 KNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVW 274
Query: 217 --DAHVPPGMLPEIALDGGKTFR 237
D H P + PE G +R
Sbjct: 275 PGDTHFPDMLNPEARKWFGDKYR 297
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 163 KNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDY----QGVPKTYFPLRKEGNLTLYQ-- 216
KN FP+ M+ + + IP+ GV Y +GV YF R++G+ +
Sbjct: 215 KNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVW 274
Query: 217 --DAHVPPGMLPEIALDGGKTFR 237
D H P + PE G +R
Sbjct: 275 PGDTHFPDMLNPEARKWFGDKYR 297
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 163 KNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDY----QGVPKTYFPLRKEGNLTLYQ-- 216
KN FP+ M+ + + IP+ GV Y +GV YF R++G+ +
Sbjct: 215 KNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVW 274
Query: 217 --DAHVPPGMLPEIALDGGKTFR 237
D H P + PE G +R
Sbjct: 275 PGDTHFPDMLNPEARKWFGDKYR 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,447,028
Number of Sequences: 62578
Number of extensions: 1223028
Number of successful extensions: 2316
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2313
Number of HSP's gapped (non-prelim): 33
length of query: 852
length of database: 14,973,337
effective HSP length: 107
effective length of query: 745
effective length of database: 8,277,491
effective search space: 6166730795
effective search space used: 6166730795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)