Query 045478
Match_columns 852
No_of_seqs 540 out of 3587
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 7E-185 2E-189 1576.1 76.4 821 22-852 9-868 (868)
2 PLN02270 phospholipase D alpha 100.0 7E-176 2E-180 1504.7 72.3 793 20-852 1-808 (808)
3 PLN02352 phospholipase D epsil 100.0 2E-167 4E-172 1434.2 69.6 741 23-852 6-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 9E-147 2E-151 1253.2 59.0 760 21-852 70-853 (887)
5 PLN02866 phospholipase D 100.0 4.6E-97 1E-101 864.4 51.4 534 201-828 321-1056(1068)
6 PRK12452 cardiolipin synthetas 100.0 3.1E-49 6.6E-54 455.6 31.4 336 201-744 131-466 (509)
7 PRK01642 cls cardiolipin synth 100.0 5.6E-48 1.2E-52 444.9 32.4 334 201-744 107-440 (483)
8 PRK11263 cardiolipin synthase 100.0 1.6E-46 3.5E-51 421.1 32.0 342 205-769 3-344 (411)
9 COG1502 Cls Phosphatidylserine 100.0 2.7E-35 5.8E-40 339.1 30.3 337 207-743 57-394 (438)
10 PHA02820 phospholipase-D-like 100.0 4.7E-35 1E-39 329.8 30.6 327 239-741 25-360 (424)
11 PRK09428 pssA phosphatidylseri 100.0 7.1E-34 1.5E-38 321.0 29.6 349 203-743 19-395 (451)
12 PHA03003 palmytilated EEV memb 100.0 1.3E-33 2.8E-38 314.7 28.1 319 239-743 30-348 (369)
13 cd04015 C2_plant_PLD C2 domain 99.9 3.7E-26 7.9E-31 224.8 16.9 157 22-178 2-158 (158)
14 PF12357 PLD_C: Phospholipase 99.9 1.5E-24 3.3E-29 177.2 6.6 73 772-844 2-74 (74)
15 cd04013 C2_SynGAP_like C2 doma 99.9 1.3E-20 2.7E-25 181.1 16.8 127 23-184 7-145 (146)
16 cd04016 C2_Tollip C2 domain pr 99.8 1.4E-20 3E-25 176.1 14.9 117 27-177 2-121 (121)
17 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.3E-19 7.2E-24 167.9 14.0 114 29-173 2-125 (126)
18 PRK05443 polyphosphate kinase; 99.8 2.8E-18 6.1E-23 202.3 24.2 266 240-743 348-633 (691)
19 TIGR03705 poly_P_kin polyphosp 99.8 5.5E-18 1.2E-22 198.6 21.5 266 240-743 339-624 (672)
20 cd08682 C2_Rab11-FIP_classI C2 99.8 1.6E-18 3.4E-23 164.5 13.4 117 29-176 1-126 (126)
21 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.7E-18 1E-22 160.1 15.3 119 29-179 2-121 (121)
22 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.3E-17 2.7E-22 157.0 14.2 118 29-177 2-121 (121)
23 cd08400 C2_Ras_p21A1 C2 domain 99.7 2.4E-17 5.1E-22 156.4 15.8 120 26-179 3-124 (126)
24 cd04019 C2C_MCTP_PRT_plant C2 99.7 1.5E-17 3.3E-22 162.0 14.1 122 28-180 1-134 (150)
25 cd08681 C2_fungal_Inn1p-like C 99.7 1.7E-17 3.6E-22 155.6 12.1 116 27-177 1-118 (118)
26 cd04022 C2A_MCTP_PRT_plant C2 99.7 3.5E-17 7.5E-22 155.6 13.3 120 28-179 1-127 (127)
27 cd08678 C2_C21orf25-like C2 do 99.7 1.2E-16 2.5E-21 151.7 14.7 122 29-182 1-124 (126)
28 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.2E-16 2.7E-21 149.9 14.3 118 27-178 1-119 (119)
29 cd08378 C2B_MCTP_PRT_plant C2 99.7 7.9E-17 1.7E-21 151.6 12.7 113 29-178 2-120 (121)
30 cd04044 C2A_Tricalbin-like C2 99.7 1.5E-16 3.3E-21 150.3 13.7 121 27-179 2-124 (124)
31 cd04014 C2_PKC_epsilon C2 doma 99.7 3.6E-16 7.8E-21 149.6 15.1 125 25-179 2-130 (132)
32 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3.3E-16 7.1E-21 147.5 14.3 117 29-176 2-120 (121)
33 cd08376 C2B_MCTP_PRT C2 domain 99.7 7.5E-16 1.6E-20 143.9 14.7 113 28-178 1-115 (116)
34 cd04024 C2A_Synaptotagmin-like 99.7 5.4E-16 1.2E-20 147.4 13.7 120 27-177 1-128 (128)
35 cd08391 C2A_C2C_Synaptotagmin_ 99.7 5.5E-16 1.2E-20 145.8 13.4 120 27-177 1-121 (121)
36 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 5.8E-16 1.3E-20 148.3 13.7 120 28-178 1-133 (133)
37 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 8.2E-16 1.8E-20 145.3 13.4 117 28-175 1-122 (123)
38 KOG1030 Predicted Ca2+-depende 99.6 4.6E-16 1E-20 148.7 10.1 99 24-153 3-102 (168)
39 KOG3603 Predicted phospholipas 99.6 3.2E-14 7E-19 153.1 24.3 337 241-741 73-418 (456)
40 cd04046 C2_Calpain C2 domain p 99.6 4.2E-15 9.1E-20 141.0 15.6 122 26-180 2-124 (126)
41 cd04036 C2_cPLA2 C2 domain pre 99.6 1.7E-15 3.7E-20 142.2 12.8 113 29-177 2-117 (119)
42 cd08375 C2_Intersectin C2 doma 99.6 3.1E-15 6.8E-20 143.6 13.9 114 27-177 15-135 (136)
43 cd08685 C2_RGS-like C2 domain 99.6 8.8E-16 1.9E-20 143.9 9.5 102 25-157 10-119 (119)
44 cd08395 C2C_Munc13 C2 domain t 99.6 1.9E-15 4.2E-20 141.1 11.7 100 28-158 1-111 (120)
45 cd08373 C2A_Ferlin C2 domain f 99.6 4E-15 8.6E-20 141.4 14.0 103 78-183 15-121 (127)
46 cd08688 C2_KIAA0528-like C2 do 99.6 1.3E-15 2.9E-20 140.8 10.3 100 29-159 1-109 (110)
47 cd08381 C2B_PI3K_class_II C2 d 99.6 1.8E-15 3.8E-20 142.7 10.9 101 26-157 12-121 (122)
48 cd04045 C2C_Tricalbin-like C2 99.6 4.7E-15 1E-19 139.3 12.0 104 27-161 1-105 (120)
49 cd04050 C2B_Synaptotagmin-like 99.6 4E-15 8.6E-20 136.5 11.3 97 29-158 2-101 (105)
50 cd08394 C2A_Munc13 C2 domain f 99.6 6E-15 1.3E-19 137.4 12.5 97 27-158 2-100 (127)
51 cd04051 C2_SRC2_like C2 domain 99.6 2.8E-15 6E-20 142.0 10.5 113 28-173 1-125 (125)
52 cd04028 C2B_RIM1alpha C2 domai 99.6 5.2E-15 1.1E-19 142.8 12.5 106 25-160 27-139 (146)
53 cd08677 C2A_Synaptotagmin-13 C 99.6 3.8E-15 8.2E-20 137.4 10.7 100 25-157 12-118 (118)
54 cd08387 C2A_Synaptotagmin-8 C2 99.6 4.1E-15 8.8E-20 140.7 11.3 103 26-158 15-123 (124)
55 cd08385 C2A_Synaptotagmin-1-5- 99.6 6.3E-15 1.4E-19 139.4 11.8 104 25-158 14-123 (124)
56 cd08382 C2_Smurf-like C2 domai 99.6 1.2E-14 2.6E-19 137.3 12.5 116 29-175 2-122 (123)
57 cd04043 C2_Munc13_fungal C2 do 99.6 2.4E-14 5.2E-19 135.8 14.3 114 28-179 2-122 (126)
58 cd04017 C2D_Ferlin C2 domain f 99.6 2.6E-14 5.6E-19 137.3 14.6 118 28-180 2-134 (135)
59 cd04027 C2B_Munc13 C2 domain s 99.6 2E-14 4.4E-19 136.5 13.2 114 28-175 2-127 (127)
60 cd04041 C2A_fungal C2 domain f 99.6 9.8E-15 2.1E-19 135.3 10.5 98 27-157 1-106 (111)
61 cd04029 C2A_SLP-4_5 C2 domain 99.6 1.6E-14 3.4E-19 136.7 11.7 103 25-157 13-124 (125)
62 cd08383 C2A_RasGAP C2 domain ( 99.6 4.2E-14 9.2E-19 132.2 14.1 112 29-177 2-117 (117)
63 cd08393 C2A_SLP-1_2 C2 domain 99.6 1.4E-14 3E-19 137.3 10.8 102 26-157 14-124 (125)
64 cd04018 C2C_Ferlin C2 domain t 99.6 1.2E-14 2.7E-19 141.2 10.7 102 28-148 1-107 (151)
65 cd04039 C2_PSD C2 domain prese 99.6 1.8E-14 3.9E-19 132.6 11.1 97 27-150 1-100 (108)
66 cd04052 C2B_Tricalbin-like C2 99.6 2.7E-14 5.9E-19 132.3 12.2 98 77-180 12-111 (111)
67 cd04010 C2B_RasA3 C2 domain se 99.6 2.8E-14 6E-19 138.5 12.1 102 28-161 1-124 (148)
68 cd04030 C2C_KIAA1228 C2 domain 99.5 2.5E-14 5.4E-19 135.9 11.2 101 27-157 16-126 (127)
69 cd04049 C2_putative_Elicitor-r 99.5 3E-14 6.6E-19 134.7 11.7 100 27-157 1-106 (124)
70 cd04040 C2D_Tricalbin-like C2 99.5 5.2E-14 1.1E-18 131.2 12.3 111 29-172 1-113 (115)
71 cd08392 C2A_SLP-3 C2 domain fi 99.5 2.9E-14 6.3E-19 135.4 10.6 102 26-157 14-127 (128)
72 cd04031 C2A_RIM1alpha C2 domai 99.5 3.7E-14 8.1E-19 134.2 11.0 101 26-157 15-124 (125)
73 cd00138 PLDc Phospholipase D. 99.5 7.5E-14 1.6E-18 140.3 13.8 145 239-457 20-169 (176)
74 cd08521 C2A_SLP C2 domain firs 99.5 3.6E-14 7.9E-19 133.9 10.5 102 26-157 13-123 (123)
75 cd08386 C2A_Synaptotagmin-7 C2 99.5 6.5E-14 1.4E-18 132.6 12.0 103 26-158 15-124 (125)
76 cd08680 C2_Kibra C2 domain fou 99.5 4E-14 8.7E-19 133.3 10.3 102 26-157 13-124 (124)
77 cd08407 C2B_Synaptotagmin-13 C 99.5 2.4E-14 5.2E-19 137.2 8.8 108 26-165 14-131 (138)
78 cd08384 C2B_Rabphilin_Doc2 C2 99.5 2.8E-14 6.1E-19 136.7 9.1 107 26-164 12-126 (133)
79 cd08676 C2A_Munc13-like C2 dom 99.5 6.2E-14 1.4E-18 136.5 10.8 99 25-157 26-153 (153)
80 cd08690 C2_Freud-1 C2 domain f 99.5 1.9E-13 4.1E-18 132.9 14.0 98 78-178 25-137 (155)
81 cd08403 C2B_Synaptotagmin-3-5- 99.5 4.2E-14 9.1E-19 135.7 8.6 108 25-164 12-127 (134)
82 cd08388 C2A_Synaptotagmin-4-11 99.5 1.7E-13 3.7E-18 130.2 12.7 102 26-157 15-126 (128)
83 cd04011 C2B_Ferlin C2 domain s 99.5 1.4E-13 2.9E-18 127.7 11.6 97 28-159 5-110 (111)
84 cd08404 C2B_Synaptotagmin-4 C2 99.5 5.9E-14 1.3E-18 135.0 8.6 107 26-164 14-128 (136)
85 cd08405 C2B_Synaptotagmin-7 C2 99.5 6E-14 1.3E-18 135.0 8.6 107 26-164 14-128 (136)
86 cd08402 C2B_Synaptotagmin-1 C2 99.5 4.4E-14 9.6E-19 135.9 7.6 108 25-164 13-128 (136)
87 cd08406 C2B_Synaptotagmin-12 C 99.5 7.3E-14 1.6E-18 133.8 8.5 107 26-164 14-128 (136)
88 PHA02820 phospholipase-D-like 99.5 3.7E-13 8E-18 152.5 15.6 147 505-740 4-150 (424)
89 cd08390 C2A_Synaptotagmin-15-1 99.5 2.3E-13 5E-18 128.5 11.6 102 26-157 13-121 (123)
90 cd04038 C2_ArfGAP C2 domain pr 99.5 2.6E-13 5.6E-18 131.4 11.5 93 27-151 2-95 (145)
91 cd08675 C2B_RasGAP C2 domain s 99.5 2.2E-13 4.7E-18 131.1 10.8 99 29-158 1-119 (137)
92 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 1.7E-13 3.8E-18 135.5 10.3 103 25-157 25-136 (162)
93 cd04021 C2_E3_ubiquitin_ligase 99.5 5.8E-13 1.3E-17 126.1 13.3 116 28-175 3-124 (125)
94 cd08692 C2B_Tac2-N C2 domain s 99.5 1.3E-13 2.8E-18 130.4 8.7 108 26-164 13-128 (135)
95 cd04032 C2_Perforin C2 domain 99.5 3.8E-13 8.3E-18 127.0 11.9 89 26-146 27-118 (127)
96 cd00276 C2B_Synaptotagmin C2 d 99.5 1.3E-13 2.9E-18 132.0 8.6 107 26-164 13-127 (134)
97 cd00275 C2_PLC_like C2 domain 99.5 9E-13 1.9E-17 125.2 14.1 116 28-177 3-127 (128)
98 cd08389 C2A_Synaptotagmin-14_1 99.5 3.6E-13 7.7E-18 127.4 11.0 101 26-157 15-122 (124)
99 cd08409 C2B_Synaptotagmin-15 C 99.5 1.7E-13 3.8E-18 131.8 8.7 108 26-164 14-129 (137)
100 cd04026 C2_PKC_alpha_gamma C2 99.4 3.7E-13 8E-18 128.6 10.6 106 25-161 11-123 (131)
101 cd08410 C2B_Synaptotagmin-17 C 99.4 3E-13 6.4E-18 129.9 8.8 108 26-164 13-128 (135)
102 PHA03003 palmytilated EEV memb 99.4 9.9E-13 2.1E-17 147.2 13.4 146 241-457 217-363 (369)
103 PRK12452 cardiolipin synthetas 99.4 9.5E-13 2.1E-17 152.9 12.8 139 239-458 343-481 (509)
104 PRK13912 nuclease NucT; Provis 99.4 4.1E-12 9E-17 127.6 15.1 141 239-457 32-174 (177)
105 cd08691 C2_NEDL1-like C2 domai 99.4 4E-12 8.8E-17 121.8 13.7 115 28-175 2-136 (137)
106 cd04009 C2B_Munc13-like C2 dom 99.4 1.2E-12 2.5E-17 125.5 9.9 91 27-147 16-118 (133)
107 cd08686 C2_ABR C2 domain in th 99.4 4.5E-12 9.7E-17 116.7 12.7 104 29-177 1-118 (118)
108 cd08408 C2B_Synaptotagmin-14_1 99.4 9.6E-13 2.1E-17 126.6 8.6 108 26-164 14-130 (138)
109 PLN03200 cellulose synthase-in 99.4 9.2E-13 2E-17 167.7 10.8 119 25-179 1978-2101(2102)
110 cd04048 C2A_Copine C2 domain f 99.4 2.2E-12 4.7E-17 121.3 10.3 97 32-158 5-113 (120)
111 cd04037 C2E_Ferlin C2 domain f 99.3 5.6E-12 1.2E-16 119.2 11.5 89 28-146 1-92 (124)
112 KOG1028 Ca2+-dependent phospho 99.3 7.8E-12 1.7E-16 141.5 14.6 128 24-181 164-297 (421)
113 cd04035 C2A_Rabphilin_Doc2 C2 99.3 5.9E-12 1.3E-16 118.9 11.5 101 26-156 14-122 (123)
114 KOG0696 Serine/threonine prote 99.3 5.7E-13 1.2E-17 142.2 4.1 104 27-161 180-290 (683)
115 PRK13912 nuclease NucT; Provis 99.3 5E-12 1.1E-16 127.1 9.5 127 545-743 32-159 (177)
116 KOG2059 Ras GTPase-activating 99.3 4E-12 8.8E-17 143.3 9.1 131 26-188 4-135 (800)
117 cd00138 PLDc Phospholipase D. 99.3 2.9E-11 6.3E-16 121.4 12.3 131 544-742 19-152 (176)
118 cd04047 C2B_Copine C2 domain s 99.2 9.7E-11 2.1E-15 108.3 10.8 87 31-148 4-101 (110)
119 KOG1011 Neurotransmitter relea 99.2 3.2E-11 6.9E-16 133.6 7.3 123 27-182 295-430 (1283)
120 PF13091 PLDc_2: PLD-like doma 99.2 8.1E-11 1.8E-15 111.3 9.0 113 551-742 1-113 (126)
121 PF13091 PLDc_2: PLD-like doma 99.1 2.9E-10 6.2E-15 107.5 11.5 124 245-454 1-126 (126)
122 PRK01642 cls cardiolipin synth 99.1 2.9E-10 6.2E-15 132.1 13.6 138 239-458 317-455 (483)
123 PF00168 C2: C2 domain; Inter 99.1 1.2E-10 2.7E-15 101.4 8.1 81 29-139 1-85 (85)
124 smart00239 C2 Protein kinase C 99.1 1E-09 2.2E-14 98.2 10.4 93 28-150 1-97 (101)
125 cd00030 C2 C2 domain. The C2 d 99.1 9.6E-10 2.1E-14 97.9 10.0 99 29-157 1-102 (102)
126 PRK11263 cardiolipin synthase 99.0 2.6E-09 5.7E-14 120.8 13.9 135 239-455 205-340 (411)
127 PLN02223 phosphoinositide phos 99.0 6.1E-09 1.3E-13 118.3 14.0 124 25-177 407-536 (537)
128 COG5038 Ca2+-dependent lipid-b 98.9 3.8E-09 8.1E-14 126.1 11.8 134 25-190 434-569 (1227)
129 KOG1028 Ca2+-dependent phospho 98.9 3E-09 6.5E-14 120.6 8.1 108 26-165 297-412 (421)
130 cd08689 C2_fungal_Pkc1p C2 dom 98.9 7.2E-09 1.6E-13 92.3 8.2 87 29-146 1-87 (109)
131 COG5038 Ca2+-dependent lipid-b 98.9 5.5E-09 1.2E-13 124.7 9.7 124 25-180 1038-1163(1227)
132 PLN02952 phosphoinositide phos 98.8 1.9E-08 4.1E-13 116.8 13.3 123 26-177 469-598 (599)
133 PF00614 PLDc: Phospholipase D 98.8 7.5E-10 1.6E-14 74.5 0.9 27 361-395 2-28 (28)
134 cd08374 C2F_Ferlin C2 domain s 98.8 2.7E-08 5.9E-13 94.3 10.2 94 29-150 2-126 (133)
135 PLN02230 phosphoinositide phos 98.8 4.6E-08 9.9E-13 113.4 12.4 125 25-177 467-597 (598)
136 PRK05443 polyphosphate kinase; 98.8 3.4E-08 7.3E-13 117.5 11.6 119 549-744 351-481 (691)
137 KOG1031 Predicted Ca2+-depende 98.7 2.6E-08 5.7E-13 109.7 9.4 135 25-192 1-153 (1169)
138 PLN02222 phosphoinositide phos 98.7 1.3E-07 2.9E-12 109.5 13.6 96 78-177 479-580 (581)
139 PLN02228 Phosphoinositide phos 98.7 1.4E-07 3.1E-12 108.8 13.3 99 78-180 458-563 (567)
140 KOG0169 Phosphoinositide-speci 98.6 1.2E-07 2.6E-12 109.7 11.3 122 28-179 617-745 (746)
141 KOG3603 Predicted phospholipas 98.6 3.8E-07 8.2E-12 99.2 13.7 155 240-457 276-439 (456)
142 smart00155 PLDc Phospholipase 98.6 3.7E-08 8.1E-13 67.1 3.1 26 700-725 3-28 (28)
143 PRK09428 pssA phosphatidylseri 98.5 6E-07 1.3E-11 102.6 13.5 137 545-742 34-178 (451)
144 KOG1328 Synaptic vesicle prote 98.4 7.9E-08 1.7E-12 108.9 1.5 92 92-185 179-308 (1103)
145 COG1502 Cls Phosphatidylserine 98.4 1.6E-06 3.5E-11 100.1 12.1 135 243-457 273-409 (438)
146 PF00614 PLDc: Phospholipase D 98.3 3.4E-07 7.3E-12 61.8 1.4 26 700-725 3-28 (28)
147 KOG1328 Synaptic vesicle prote 98.2 5.8E-07 1.2E-11 102.1 1.8 92 25-146 945-1048(1103)
148 KOG1264 Phospholipase C [Lipid 98.1 1E-05 2.2E-10 93.2 10.6 124 24-182 1062-1193(1267)
149 KOG3964 Phosphatidylglycerolph 97.9 0.00018 4E-09 77.6 14.4 130 238-397 37-171 (469)
150 PF13918 PLDc_3: PLD-like doma 97.9 7.4E-05 1.6E-09 73.7 10.6 58 548-619 84-147 (177)
151 cd08683 C2_C2cd3 C2 domain fou 97.9 1.5E-05 3.3E-10 73.4 4.3 83 75-157 30-143 (143)
152 PF07894 DUF1669: Protein of u 97.7 0.00029 6.3E-09 74.5 11.8 189 174-454 90-278 (284)
153 KOG2059 Ras GTPase-activating 97.6 8.1E-05 1.8E-09 85.4 6.6 107 78-184 151-282 (800)
154 smart00155 PLDc Phospholipase 97.6 5E-05 1.1E-09 51.7 2.7 24 362-393 3-26 (28)
155 TIGR03705 poly_P_kin polyphosp 97.4 0.0011 2.4E-08 79.1 12.1 118 549-743 342-471 (672)
156 PF13918 PLDc_3: PLD-like doma 97.4 0.00078 1.7E-08 66.6 8.9 57 241-303 83-140 (177)
157 PLN02866 phospholipase D 97.2 0.00068 1.5E-08 82.6 7.4 62 545-613 343-404 (1068)
158 PLN02964 phosphatidylserine de 97.2 0.00044 9.5E-09 81.8 5.5 85 78-162 68-156 (644)
159 KOG0905 Phosphoinositide 3-kin 97.1 0.00051 1.1E-08 82.7 5.0 104 24-157 1521-1633(1639)
160 KOG1011 Neurotransmitter relea 96.8 0.0036 7.7E-08 71.0 8.3 98 29-157 1127-1235(1283)
161 KOG1013 Synaptic vesicle prote 96.7 0.00077 1.7E-08 71.5 2.0 150 27-206 93-260 (362)
162 KOG1326 Membrane-associated pr 96.7 0.00083 1.8E-08 80.1 2.4 87 28-144 614-703 (1105)
163 KOG1013 Synaptic vesicle prote 96.6 0.0022 4.8E-08 68.1 4.8 100 26-157 232-339 (362)
164 KOG2060 Rab3 effector RIM1 and 96.6 0.0021 4.5E-08 69.5 4.5 108 26-162 268-382 (405)
165 KOG1329 Phospholipase D1 [Lipi 96.2 0.01 2.3E-07 71.0 7.3 145 233-397 559-727 (887)
166 KOG1326 Membrane-associated pr 96.1 0.0017 3.7E-08 77.6 0.6 100 27-158 206-316 (1105)
167 PF11495 Regulator_TrmB: Archa 96.1 0.031 6.8E-07 58.8 9.9 50 239-305 9-58 (233)
168 PF07894 DUF1669: Protein of u 96.0 0.018 3.9E-07 61.2 7.4 130 545-738 133-262 (284)
169 PLN02352 phospholipase D epsil 95.9 0.022 4.7E-07 68.3 8.4 65 239-303 452-519 (758)
170 KOG3837 Uncharacterized conser 95.5 0.013 2.9E-07 63.9 4.4 98 78-178 388-503 (523)
171 KOG1327 Copine [Signal transdu 95.2 0.025 5.3E-07 64.8 5.1 85 32-147 141-236 (529)
172 KOG1265 Phospholipase C [Lipid 95.1 0.084 1.8E-06 62.8 9.5 101 24-164 700-810 (1189)
173 PLN03008 Phospholipase D delta 95.1 0.038 8.3E-07 66.6 6.9 73 230-303 556-633 (868)
174 PF10358 NT-C2: N-terminal C2 95.1 0.56 1.2E-05 45.1 13.8 120 28-185 8-142 (143)
175 cd08684 C2A_Tac2-N C2 domain f 95.0 0.02 4.2E-07 49.6 2.8 70 84-156 29-102 (103)
176 PLN02270 phospholipase D alpha 94.8 0.081 1.8E-06 63.8 8.5 64 239-303 498-569 (808)
177 PF12416 DUF3668: Cep120 prote 94.4 0.51 1.1E-05 52.2 12.7 104 78-182 18-136 (340)
178 COG0855 Ppk Polyphosphate kina 94.3 6.6 0.00014 46.3 21.8 93 239-374 351-448 (696)
179 COG3886 Predicted HKD family n 93.7 1.4 3.1E-05 43.9 12.9 140 239-455 38-178 (198)
180 cd08398 C2_PI3K_class_I_alpha 90.9 1.8 3.9E-05 42.6 10.0 86 25-144 6-105 (158)
181 cd08687 C2_PKN-like C2 domain 90.7 1.7 3.6E-05 38.2 8.2 84 78-177 9-92 (98)
182 PF13090 PP_kinase_C: Polyphos 87.9 2 4.4E-05 47.1 8.3 137 240-452 18-160 (352)
183 PF15627 CEP76-C2: CEP76 C2 do 87.7 4.9 0.00011 39.3 10.1 103 78-181 34-153 (156)
184 cd08693 C2_PI3K_class_I_beta_d 87.5 3.9 8.4E-05 41.0 9.7 72 25-128 6-86 (173)
185 KOG1452 Predicted Rho GTPase-a 86.1 1.4 3E-05 47.0 5.7 119 26-180 50-169 (442)
186 cd08380 C2_PI3K_like C2 domain 84.2 6.6 0.00014 38.4 9.4 68 78-145 28-107 (156)
187 PF09565 RE_NgoFVII: NgoFVII r 83.9 8.8 0.00019 41.7 10.9 40 700-741 79-123 (296)
188 cd08397 C2_PI3K_class_III C2 d 82.7 5.5 0.00012 39.3 8.0 68 78-145 30-107 (159)
189 PF13090 PP_kinase_C: Polyphos 82.5 2.8 6.1E-05 46.0 6.4 43 700-744 102-151 (352)
190 cd04012 C2A_PI3K_class_II C2 d 81.6 12 0.00026 37.4 10.1 91 25-145 6-119 (171)
191 PF15625 CC2D2AN-C2: CC2D2A N- 78.5 10 0.00022 37.7 8.5 69 78-146 37-107 (168)
192 PF14429 DOCK-C2: C2 domain in 76.3 9.9 0.00021 38.4 7.8 54 91-144 60-120 (184)
193 PF00792 PI3K_C2: Phosphoinosi 75.4 17 0.00036 35.0 8.9 67 79-145 3-85 (142)
194 KOG0694 Serine/threonine prote 70.9 1.7 3.6E-05 51.5 0.7 95 78-181 28-124 (694)
195 cd08695 C2_Dock-B C2 domains f 68.9 11 0.00025 38.1 6.1 53 91-143 54-112 (189)
196 COG3886 Predicted HKD family n 68.7 41 0.0009 33.9 9.7 51 545-614 38-89 (198)
197 COG0855 Ppk Polyphosphate kina 68.5 8.8 0.00019 45.3 5.8 41 700-742 436-483 (696)
198 cd08399 C2_PI3K_class_I_gamma 67.5 43 0.00092 33.7 9.8 98 80-181 32-141 (178)
199 KOG1327 Copine [Signal transdu 66.1 14 0.00031 42.9 6.9 59 90-148 41-105 (529)
200 KOG4269 Rac GTPase-activating 65.9 12 0.00026 45.6 6.2 118 24-184 756-888 (1112)
201 KOG3543 Ca2+-dependent activat 65.2 51 0.0011 38.6 10.8 118 23-177 337-458 (1218)
202 cd08694 C2_Dock-A C2 domains f 64.3 17 0.00036 37.0 6.2 54 90-143 53-114 (196)
203 PF11618 DUF3250: Protein of u 63.0 53 0.0012 30.1 8.7 93 81-177 2-104 (107)
204 cd05137 RasGAP_CLA2_BUD2 CLA2/ 62.8 8.5 0.00018 43.7 4.3 49 134-184 1-50 (395)
205 PF11495 Regulator_TrmB: Archa 59.8 21 0.00046 37.4 6.5 51 544-614 8-58 (233)
206 PF06087 Tyr-DNA_phospho: Tyro 58.1 5.1 0.00011 46.4 1.6 40 698-738 345-401 (443)
207 smart00142 PI3K_C2 Phosphoinos 52.5 70 0.0015 28.7 7.7 50 78-127 32-90 (100)
208 cd08679 C2_DOCK180_related C2 51.5 44 0.00095 33.5 6.9 52 92-144 55-115 (178)
209 cd08696 C2_Dock-C C2 domains f 49.0 55 0.0012 33.0 7.0 53 90-142 54-116 (179)
210 PTZ00447 apical membrane antig 46.4 1.5E+02 0.0033 32.5 10.0 96 78-180 74-173 (508)
211 cd08697 C2_Dock-D C2 domains f 40.7 97 0.0021 31.4 7.3 39 90-128 56-97 (185)
212 PF06087 Tyr-DNA_phospho: Tyro 26.4 47 0.001 38.6 2.7 36 700-738 100-139 (443)
213 KOG3964 Phosphatidylglycerolph 25.7 1.4E+02 0.003 33.7 5.8 55 546-616 39-93 (469)
214 COG1184 GCD2 Translation initi 25.6 56 0.0012 35.6 2.9 78 243-341 96-175 (301)
215 COG2044 Predicted peroxiredoxi 25.0 2.2E+02 0.0047 26.7 6.2 63 239-301 17-80 (120)
216 PF13289 SIR2_2: SIR2-like dom 23.3 2.8E+02 0.0062 25.8 7.2 65 240-339 74-142 (143)
217 KOG3216 Diamine acetyltransfer 21.7 3.1E+02 0.0067 26.9 6.6 46 558-613 81-126 (163)
218 COG1378 Predicted transcriptio 21.4 1.6E+02 0.0035 31.3 5.4 49 239-304 119-167 (247)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=7.2e-185 Score=1576.15 Aligned_cols=821 Identities=62% Similarity=1.105 Sum_probs=751.0
Q ss_pred ceeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCC------cc------ccCCCCCCCCcCCCcEEEEEECCe
Q 045478 22 PVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPF------KK------TRGLSGRHSMITSNPYVSVCLSGA 89 (852)
Q Consensus 22 ~~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~~~sdpYv~v~l~~~ 89 (852)
.+||||+|+++|++|++|++||+++++++++|..+..|.... ++ .|..++++..++|||||+|.++++
T Consensus 9 ~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~ 88 (868)
T PLN03008 9 VMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQA 88 (868)
T ss_pred eEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCc
Confidence 468999999999999999999999998998887544333221 11 122345567888999999999999
Q ss_pred eEEEeeeecCCCCCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCC
Q 045478 90 TVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFP 169 (852)
Q Consensus 90 ~~~rT~vi~~s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g 169 (852)
+++||+++.++.||+|||+|+|+|+|+.+.|+|+|||+|.+++++||++.||++++..|+.++.|++|++..++|+|+++
T Consensus 89 rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~ 168 (868)
T PLN03008 89 TLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAET 168 (868)
T ss_pred ceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeecCCcccccCCCCCCCCCCCCCccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHH
Q 045478 170 QLHVSMQYKPIGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAV 249 (852)
Q Consensus 170 ~l~l~l~f~~~~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI 249 (852)
+|+|+|+|+|+++++.|..||++++++.|+|.+|||+|+||+|+||||||++++|+|.|.|.||+.|+|..||++|++||
T Consensus 169 kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi~~AI 248 (868)
T PLN03008 169 AIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICYAI 248 (868)
T ss_pred EEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHHHHHH
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHH
Q 045478 250 LEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETR 329 (852)
Q Consensus 250 ~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~ 329 (852)
++||++|||++||++|+++|+|++.. +.+.+.+|+++|++||+|||+|+|||||+.+|+..++++..|+|.+|+++++
T Consensus 249 ~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thdeet~ 326 (868)
T PLN03008 249 SEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETR 326 (868)
T ss_pred HhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccHHHH
Confidence 99999999999999999999998742 3334689999999999999999999999999987777889999999999999
Q ss_pred hhhcCCCCEEEecCCCCCCcchhhhhc-----------cccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 330 KFFKHSSVNCVLAPRYASNKLSIFKQQ-----------VVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 330 ~~l~~~gv~v~~~~~~~~~~~~~~~~~-----------~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
++|++++|.|.++|++++.+.+++++. ..+++|+||||+||||+++++++|+++|||||+|||+|||||
T Consensus 327 ~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gRwDT 406 (868)
T PLN03008 327 KFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDT 406 (868)
T ss_pred HhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCccCC
Confidence 999999999999999988888887763 345789999999999998788899999999999999999999
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhh--hhhccccccccccc
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWRE--FRLKKVTHWYDDSL 476 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~--~~~~~~~~~~~~~~ 476 (852)
+.|++++++++.|++||+||++.++.+.|++||||+|++|+||||++|+.+|.+||+.+++... .+.++...|.++.|
T Consensus 407 ~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~~d~l 486 (868)
T PLN03008 407 PEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDAL 486 (868)
T ss_pred cCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccccchh
Confidence 9999999999999999999998877788999999999999999999999999999999988542 12334456778889
Q ss_pred ccccccCCCCCCCCCC-------------CCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccc
Q 045478 477 INLDRIGITPSTGPHS-------------YKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKV 543 (852)
Q Consensus 477 ~~~~~~~~~~~~~P~~-------------~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 543 (852)
+.+.++++++. |.. .+.......+++++|.+|+|||++.|++.+||..++++..++|+||++..+
T Consensus 487 ~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~i 564 (868)
T PLN03008 487 IRIGRISWILS--PVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVV 564 (868)
T ss_pred cchhhcccccC--CCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccch
Confidence 99988887653 210 011111113567899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 045478 544 DKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSA 623 (852)
Q Consensus 544 e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~ 623 (852)
|+||++||++||++||||||||||||++++++|+.+++.++.|+|+++++++|+++++++++|+|+||+|+||||++.++
T Consensus 565 e~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~sg 644 (868)
T PLN03008 565 DKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSG 644 (868)
T ss_pred hhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEE
Q 045478 624 AVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVH 703 (852)
Q Consensus 624 ~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
++|+|++||++||+++|.+|+++|+++|... +|.+|++|||||+++...... ++.+++.+..+|++|+++||||
T Consensus 645 ~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~--~p~dyl~fy~L~~~e~~~~~~----~~~~~~~~~~a~~~rr~~IYvH 718 (868)
T PLN03008 645 PVQEILYWQSQTMQMMYDVIAKELKAVQSDA--HPLDYLNFYCLGKREQLPDDM----PATNGSVVSDSYNFQRFMIYVH 718 (868)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccCEEEEecccccccccCCC----CCCCCchhhhhhhccceeEEEe
Confidence 9999999999999999999999999988754 799999999999998763322 2344566778899999999999
Q ss_pred eeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCcccccccCCCCCcchHHHHHHHHHHhcCCCccccCCCCchHH
Q 045478 704 AKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLEC 783 (852)
Q Consensus 704 SKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~~~~~~~~~~g~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~ 783 (852)
||+|||||++++|||||||+|||.++||||+++.++++.++|++..+.++|+|++||++||+||||+.++.|.+|++++|
T Consensus 719 sK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s~ec 798 (868)
T PLN03008 719 AKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLEC 798 (868)
T ss_pred eeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999876677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhhccccccceeccceeeCCCCCcccCCCCCCCCCCCCcccccCC-CCCCCCCC
Q 045478 784 MQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPT-SLPDALTT 852 (852)
Q Consensus 784 ~~~~~~~a~~n~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 852 (852)
++++|++|++||++|+++++++|+|||++||+.|+.||+++++||+++||||+|+|||+++ +||++|||
T Consensus 799 v~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 799 LKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred HHHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=7.1e-176 Score=1504.67 Aligned_cols=793 Identities=46% Similarity=0.835 Sum_probs=714.8
Q ss_pred CCceeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCc-ccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeec
Q 045478 20 DEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGH-CRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVIS 98 (852)
Q Consensus 20 ~~~~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~ 98 (852)
|+.+||||+|+|+|++|++|+|++. .+.+++++..+.. |. ...+++||||+|.+++++++||+++.
T Consensus 1 ~~~~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~y~tv~~~~a~v~rtr~~~ 67 (808)
T PLN02270 1 MAQILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVG------------VGKGESQLYATIDLEKARVGRTRKIE 67 (808)
T ss_pred CcceeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhcc------------CCCCCCCceEEEEeCCcEEEEEeecC
Confidence 5567999999999999999999755 3334443332210 00 11235999999999999999999999
Q ss_pred CC-CCCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 99 NC-ENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 99 ~s-~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|. .||+|+|+|+++|+|++++|+|+|||+|.+|+++||+++||+++|.+|+.+++||++++..|+|++++.+|+++++|
T Consensus 68 ~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f 147 (808)
T PLN02270 68 NEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQY 147 (808)
T ss_pred CCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEE
Confidence 84 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcccccCCCCCCCCCCCCCccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEE
Q 045478 178 KPIGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIY 257 (852)
Q Consensus 178 ~~~~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~ 257 (852)
+|++.++.|.+|+.+ +++.|++.+|||+|+||+||||||||++++|+|.|+|.+|+.|++..||+++++||.+||++||
T Consensus 148 ~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~Iy 226 (808)
T PLN02270 148 FEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIY 226 (808)
T ss_pred EEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEE
Confidence 999999999999976 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCC
Q 045478 258 IIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSV 337 (852)
Q Consensus 258 I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv 337 (852)
|++|+|+++++|+|++.++.+. ...+|+++|++||++||+|+||+||+.++... ++..|+|.||+++++++|++.+|
T Consensus 227 I~GW~~d~~i~LvRd~~~p~~~-~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t~~~f~~~~V 303 (808)
T PLN02270 227 ITGWSVYTEISLVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEETENFFRGTDV 303 (808)
T ss_pred EEEeecCCCceEecCCCCCCCC-CcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHHHHHhccCCc
Confidence 9999999999999987555543 35799999999999999999999999877542 45678999999999999999999
Q ss_pred EEEecCCCCCCcchhhhhccccccccCccceEEecCCCCC---CCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCC
Q 045478 338 NCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASG---NNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFAND 414 (852)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~---~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d 414 (852)
+|++++++|+.+.+++.+...++.++||||+||||+++++ ++|+++|||||+|||+|||||++|++|++|++.|++|
T Consensus 304 ~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~D 383 (808)
T PLN02270 304 HCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDD 383 (808)
T ss_pred eEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCcccccccccccccccc
Confidence 9999999998777676666677889999999999997443 5899999999999999999999999999999999999
Q ss_pred CCCCCCCC---CCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCC
Q 045478 415 FHNPSLPS---HAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPH 491 (852)
Q Consensus 415 ~~n~~~~~---~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 491 (852)
|+||.|.+ +.++||+||||+|++|+||+|++|+.+|++||+.+++... ++.+.+++++.. |+
T Consensus 384 f~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~l-------------l~~~~~~~~~~~--P~ 448 (808)
T PLN02270 384 FHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDI-------------LVQLRELEDVII--PP 448 (808)
T ss_pred ccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccc-------------hhhhcccccccC--CC
Confidence 99998863 6778999999999999999999999999999999877531 122222222211 22
Q ss_pred CCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeeccccc
Q 045478 492 SYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIG 571 (852)
Q Consensus 492 ~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~ 571 (852)
. ....+++.++|+||+|||++.+++.+||..+++++.+|+++|++...++||+.+|++||++||||||||||||++
T Consensus 449 ~----~~~~p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~s 524 (808)
T PLN02270 449 S----PVMFPDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLG 524 (808)
T ss_pred C----cccCCCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhh
Confidence 1 011135567899999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CCCCCCcc----ccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045478 572 SSYHWPSY----KNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQAL 647 (852)
Q Consensus 572 ~~~~wp~~----~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L 647 (852)
++++|+.+ ++.++.|+||++|+++|+++++++++|+|+||+|+||||.+++.++|+||+||++||+++|.+|+++|
T Consensus 525 ss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~L 604 (808)
T PLN02270 525 SSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQAL 604 (808)
T ss_pred hhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999755 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCCCCCCceEEeeCCCCCCCC-CCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCC
Q 045478 648 QDNGLSNKYHPQDYLSFYCLGKREAPP-LDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSL 726 (852)
Q Consensus 648 ~~~Gv~~~~~p~~y~~f~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm 726 (852)
+++|+.. +|.+||+||||+|||... ++|.|...+.+++.+..+|++++++||||||+|||||++++|||||||+|||
T Consensus 605 k~~g~~~--dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~ 682 (808)
T PLN02270 605 RAKGLEE--DPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSM 682 (808)
T ss_pred HHcCccC--CccceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccc
Confidence 9999864 899999999999999754 6787765666677788899999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEecCcccccccCCCCCcchHHHHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHHhHHHHhhhhc-cc
Q 045478 727 EGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKAFVCDAH-KE 805 (852)
Q Consensus 727 ~~n~DsEi~v~i~d~~~~~~~~~~~~~g~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~-~~ 805 (852)
.|+|||||+|..++|.++.+ ...++|+|++||++||+||||+.++.|.+|+|++|++++|++|++||++|+++++ .+
T Consensus 683 ~G~rDSEIam~a~qp~~~~~--~~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~ 760 (808)
T PLN02270 683 DGARDSEIAMGGYQPYHLST--RQPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHD 760 (808)
T ss_pred cCCccchhhhcccCcccccc--ccchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCC
Confidence 99999999999999987743 2467899999999999999999999999999999999999999999999999999 58
Q ss_pred cccceeccceeeCCCCCcccCCCCCCCCCCCCcccccCC-CCCCCCCC
Q 045478 806 MRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPT-SLPDALTT 852 (852)
Q Consensus 806 ~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 852 (852)
|+|||++||+.|+.||++++|||+++||||+|+|||+++ +||++|||
T Consensus 761 ~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 761 LPGHLLRYPIGVASEGDITELPGTEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 999999999999999999999999999999999999999 99999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.8e-167 Score=1434.25 Aligned_cols=741 Identities=42% Similarity=0.745 Sum_probs=654.2
Q ss_pred eeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCC
Q 045478 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCEN 102 (852)
Q Consensus 23 ~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~n 102 (852)
-+|||+|++||++|+-+ ..++..+..|.. ..+|||+|.+++++|+|| .++.|
T Consensus 6 ~~lhg~l~~~i~~~~~~----------~~~~~~~~~~~~---------------~~~~y~tv~~~~~~v~rt---~~~~~ 57 (758)
T PLN02352 6 KFFHGTLEATIFDATPY----------TPPFPFNCIFLN---------------GKATYVTIKIGNKKVAKT---SHEYD 57 (758)
T ss_pred cccccceEEEEEEeeeh----------hhcccccccccC---------------CCCceEEEEeCCcEEecC---CCCCC
Confidence 47999999999999821 122221111111 149999999999999999 67779
Q ss_pred CeeeeEEEEeecCCC-ceEEEEEEecCCCCCceeeeEeeeceeccCCCc-eeeeeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 103 PFWDEHFCVPVAHSV-VNLEFHVKDNDILGAELIGVVQIPVEKILCGNE-VDDWFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 103 P~WnE~f~~~~~~~~-~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~-~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
|+|+|+|+++|+|.+ ++|+|+||| ++++||+++||+++|..|+. +++||++++..|+|+++ .+|+++++|+|+
T Consensus 58 p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 132 (758)
T PLN02352 58 RVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPA 132 (758)
T ss_pred CccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEh
Confidence 999999999999999 899999999 68899999999999999976 99999999999999865 999999999999
Q ss_pred CCcccccCCCCCCCCCCCCCccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEE
Q 045478 181 GQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIG 260 (852)
Q Consensus 181 ~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~ 260 (852)
++++.|..|+.+ +++.|++.+|||+|+||+|+||||||++++|+|.|.| .|.+++||++|++||++||++|||++
T Consensus 133 ~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~g 207 (758)
T PLN02352 133 ELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAG 207 (758)
T ss_pred hhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEE
Confidence 999999999977 7999999999999999999999999999999999998 56778999999999999999999999
Q ss_pred eecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCCEEE
Q 045478 261 WSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCV 340 (852)
Q Consensus 261 w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~ 340 (852)
|+|+++++|+|++.++.+.+.+.+|+++|++||++||+|+||+||+.+|... ++..|+|.++++++.+++++.+|+|.
T Consensus 208 W~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~~~~~~f~h~~V~~~ 285 (758)
T PLN02352 208 WSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDEDAFAYFKHTKVVCK 285 (758)
T ss_pred EEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchHHHHhhccCCceEEe
Confidence 9999999999987554444456899999999999999999999999987643 45678899999999999999999999
Q ss_pred ecCCCCCCcchhhhhccccccccCccceEEecCCCCC--CCCceEEEEcccCCCCCccCCCCcCCCCCCccc-ccCCCCC
Q 045478 341 LAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASG--NNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTV-FANDFHN 417 (852)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~--~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~-~~~d~~n 417 (852)
++|+.+. ..++.|+||||+||||+++++ ++|+++|||||+|||+|||||++|++++++++. |++||+|
T Consensus 286 l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~ 356 (758)
T PLN02352 286 LCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQ 356 (758)
T ss_pred ecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccccccc
Confidence 9987643 235679999999999997544 578899999999999999999999999999886 5699999
Q ss_pred CCCC---CCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCCCCC
Q 045478 418 PSLP---SHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYK 494 (852)
Q Consensus 418 ~~~~---~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 494 (852)
+.|. .+.++||+||||+||+|+||||+||.+||+||||++++.. .+++..+++++.. +|.
T Consensus 357 ~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~-------------~l~p~~~~~~~~~-~p~--- 419 (758)
T PLN02352 357 TSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS-------------VLVPTSSIRNLVH-QPG--- 419 (758)
T ss_pred cccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc-------------ccCCccccccccc-CCC---
Confidence 9886 3668899999999999999999999999999999987642 1111111221110 011
Q ss_pred CCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCC
Q 045478 495 PTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSY 574 (852)
Q Consensus 495 ~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~ 574 (852)
.+....++|+||++||++.|++.+||.. ...|+||++||++||++||||||||||||+++++
T Consensus 420 ----~~~~~~~~w~VQv~RSid~~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~ 481 (758)
T PLN02352 420 ----SSESNNRNWKVQVYRSIDHVSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCH 481 (758)
T ss_pred ----CCcccCCcccceEEEecCccccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhhcccc
Confidence 1123567899999999999999888752 2358999999999999999999999999999999
Q ss_pred CCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q 045478 575 HWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSN 654 (852)
Q Consensus 575 ~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~ 654 (852)
.|+++++.++.|+|+++|+++|+++++++++|+|+||+|+||+|.+++.++|+||+||++||+++|..|.++|+++|...
T Consensus 482 ~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~ 561 (758)
T PLN02352 482 LWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPG 561 (758)
T ss_pred ccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCCCCceEEeeCCCCCCCC-CCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCce
Q 045478 655 KYHPQDYLSFYCLGKREAPP-LDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTE 733 (852)
Q Consensus 655 ~~~p~~y~~f~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsE 733 (852)
+|.+||+||||+||+... ++|.+...|...+.+..+++.++++||||||+|||||++++|||||||+|||.|+||||
T Consensus 562 --~P~dYl~F~cL~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSE 639 (758)
T PLN02352 562 --HPRDYLNFFCLANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTE 639 (758)
T ss_pred --ChhHheeeecccccccccCCccccccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccch
Confidence 899999999999998763 45544444455555667778888999999999999999999999999999999999999
Q ss_pred eEEEEecCcccccccCCCCCcchHHHHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHHhHHHHhhhhcccccc-ceec
Q 045478 734 IAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKAFVCDAHKEMRG-HLMQ 812 (852)
Q Consensus 734 i~v~i~d~~~~~~~~~~~~~g~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g-~l~~ 812 (852)
|+|++++++++. .....+++++||++||+||||+.++.|.+|+|+||++++|++|++||++|+++++++|+| ||++
T Consensus 640 ia~~~~~~~~~~---~~~~~~~i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~ 716 (758)
T PLN02352 640 IAIGCYQSKNGT---NTNNPRDIQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVN 716 (758)
T ss_pred hhhcccccccCC---CcccchHHHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchhccCCCccccc
Confidence 999999997652 234468999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cceeeCCCCCcccC-CCCCCCCCCCCcccccCC-CCCCCCCC
Q 045478 813 YPVQISREGKVSTL-PGYDTFPDVGGKILGAPT-SLPDALTT 852 (852)
Q Consensus 813 ~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 852 (852)
||+.|+.||++++| ||+++||||+|+|||+++ +||++|||
T Consensus 717 yp~~v~~~g~v~~l~~g~~~fpd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 717 YPISVTKDGAVEDLADGDGNFPDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCeEecCCcceeecCCCCcCCCCCCCceeccccccCCccccC
Confidence 99999999999999 699999999999999999 99999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=9.1e-147 Score=1253.24 Aligned_cols=760 Identities=45% Similarity=0.745 Sum_probs=672.8
Q ss_pred CceeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCC-Cc-----cccC-----CCCCCCCcCCCcEEEEEECCe
Q 045478 21 EPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFP-FK-----KTRG-----LSGRHSMITSNPYVSVCLSGA 89 (852)
Q Consensus 21 ~~~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~-~~-----~~~~-----~~~~~~~~~sdpYv~v~l~~~ 89 (852)
...|+||+|+++|+.+..++++..+..+.+..+..+..++.. .. +..+ ...+++..++++|+++.+...
T Consensus 70 ~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~~l~~~ 149 (887)
T KOG1329|consen 70 TVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTVVLHKA 149 (887)
T ss_pred eeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchheeeechh
Confidence 335899999999999999999988777555444443311111 10 1111 111234455799999999999
Q ss_pred eEEEeeeecCC-CCCeeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCC
Q 045478 90 TVAQTRVISNC-ENPFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKP 167 (852)
Q Consensus 90 ~~~rT~vi~~s-~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~ 167 (852)
++++|+.+.+. .+|.|.+.|++.++|....++++|++.+..| +.++|.+++|+..+.+|..+.+|+++++.++++.++
T Consensus 150 ~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~~~ 229 (887)
T KOG1329|consen 150 RYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKPHQK 229 (887)
T ss_pred hhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCccccC
Confidence 99999999987 9999999999999999999999999999999 999999999999999999999999999999999888
Q ss_pred CCEEEEEEEeeecCCcccccCCCCCCCCCCCCCccCccccccceeEEeecccCCCCCCCcEEecCCc-ccchhhhHHHHH
Q 045478 168 FPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGK-TFRHGQCWEEIC 246 (852)
Q Consensus 168 ~g~l~l~l~f~~~~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~-~y~~~~~~~~l~ 246 (852)
+..+.++++|++.+....|..++..++.+.|++.++++++.||.|++|+|+|+.++|.|.+.+++|+ .|.+..||++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~edi~ 309 (887)
T KOG1329|consen 230 GSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYWEDVA 309 (887)
T ss_pred CcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 677789999999
Q ss_pred HHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcH
Q 045478 247 HAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDE 326 (852)
Q Consensus 247 ~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~ 326 (852)
+||++||+.|||++||++|++||+|+... ..+.+|+++|++||++||+|+|||||++++.... +++++
T Consensus 310 dAI~~Ar~~IyItgWwl~pel~L~Rp~~~----~~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~i--------~S~~~ 377 (887)
T KOG1329|consen 310 DAIENARREIYITGWWLSPELYLVRPPKG----PNDWRLDELLKRKAEEGVRVLILVWKDVTSALGI--------NSHYE 377 (887)
T ss_pred HHHHhhhhEEEEeccccCceEEEEccCCC----CCceEHHHHHHHHHhCCcEEEEEEeccchhcccc--------CchhH
Confidence 99999999999999999999999998632 2368999999999999999999999999875422 35678
Q ss_pred HHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCC
Q 045478 327 ETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGD 406 (852)
Q Consensus 327 ~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~ 406 (852)
++..+++|++|+|.+||+++.+.. .++|+||||+||||++ +|||||+|||+|||||++|+|+|+
T Consensus 378 k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH~L~d~ 441 (887)
T KOG1329|consen 378 KTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEHPLFDT 441 (887)
T ss_pred HHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCcccccccc
Confidence 899999999999999999876431 3679999999999998 999999999999999999999999
Q ss_pred CcccccCCCCCCCCC-----CCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccccccc
Q 045478 407 LNTVFANDFHNPSLP-----SHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDR 481 (852)
Q Consensus 407 ~~~~~~~d~~n~~~~-----~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (852)
+.++|++||+||+|. ++.++||||||||||+|.||+|+||++||+||||++...+. + .++.+..+..
T Consensus 442 ~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-~-------~~~~~p~L~p 513 (887)
T KOG1329|consen 442 LQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-P-------YDDSLPLLLP 513 (887)
T ss_pred ccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-C-------CCccceeecC
Confidence 999999999999987 68899999999999999999999999999999999876541 0 0112222212
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccce
Q 045478 482 IGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHF 561 (852)
Q Consensus 482 ~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~ 561 (852)
.+++.. |+ ...+.+++.|++|++||++.+++.+ +.....+|+.|++...+|+||++||+++|++||||
T Consensus 514 ~~~~~~--~~------~~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hF 581 (887)
T KOG1329|consen 514 ISDITG--PS------EPNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHF 581 (887)
T ss_pred hhhhcC--CC------CccccccccccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccce
Confidence 222111 11 1125577889999999999887655 56777889999999889999999999999999999
Q ss_pred EEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC--CC--CCCchhHHHHHHHHHHHHH
Q 045478 562 IYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWP--EG--NPNSAAVQEILYWQGQTMS 637 (852)
Q Consensus 562 IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~p--eg--~~~~~~~~~~~~~~~~t~~ 637 (852)
||||||||++++..|.. ..|.++++||++|++|+++++.|+||||||+|| || .+.+.++|+||+||++||+
T Consensus 582 IYIENQfFi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms 656 (887)
T KOG1329|consen 582 IYIENQFFIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMS 656 (887)
T ss_pred EEEeeeeEEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHh
Confidence 99999999999987754 478889999999999999999999999999999 99 7888899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEec
Q 045478 638 MMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMG 717 (852)
Q Consensus 638 ~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIG 717 (852)
+||++|+++|++.|++- .+|.+|++|+|+++++.. +++.++|+||||||+|||||+++|||
T Consensus 657 ~g~~sI~~~Lka~g~d~-~~yi~f~~lr~~g~~e~~------------------~~~~~~emIYVHsK~mIvDD~~vIIG 717 (887)
T KOG1329|consen 657 MGYKSIYKALKAVGLDP-ADYIDFLGLRCLGNREEQ------------------AQRLRREMIYVHSKLMIVDDEYVIIG 717 (887)
T ss_pred hhHHHHHHHHHHhcCCc-cccceeeeeeeeeccccc------------------cccceEEEEEEeeeeEEecCCEEEEe
Confidence 99999999999999984 278899999999888641 23567899999999999999999999
Q ss_pred CcCcccCCCCCCCCceeEEEEecCcccccccCCCCCcchHHHHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHHhHHH
Q 045478 718 SANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKA 797 (852)
Q Consensus 718 SANln~RSm~~n~DsEi~v~i~d~~~~~~~~~~~~~g~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~ 797 (852)
|||||+|||.|+|||||||+++|+.++++.....+.||+++|||+||+||||..++.|++|++.+|.+.++...+++|..
T Consensus 718 SANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~ 797 (887)
T KOG1329|consen 718 SANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQR 797 (887)
T ss_pred ecccchhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999988888888899999999999999999999999999999999999999999999
Q ss_pred HhhhhccccccceeccceeeCCCCCcccCCCCCCCCCCCCcccccCC-CCCCCCCC
Q 045478 798 FVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPT-SLPDALTT 852 (852)
Q Consensus 798 ~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 852 (852)
|+++..+.++|||+.||+++..+|++.++||.+.|||+++++.|.++ ++|++||+
T Consensus 798 ~a~~n~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 798 YAARNTTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred HHhhhhhhhhceEEEcccccccCcceeecCCccccccccccccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999 99999986
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=4.6e-97 Score=864.39 Aligned_cols=534 Identities=30% Similarity=0.462 Sum_probs=409.4
Q ss_pred ccCcccc----ccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCC
Q 045478 201 KTYFPLR----KEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKP 276 (852)
Q Consensus 201 ~~~~p~~----~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~ 276 (852)
.+|+|++ .||.+++|.|| +++|++|++||++||++|+|++|||+|++||+|++
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~--- 377 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPF--- 377 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecC---
Confidence 5799998 69999999998 78899999999999999999999999999999852
Q ss_pred CCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhh--cCCCCEEEecCCCCCCcchhhh
Q 045478 277 LPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFF--KHSSVNCVLAPRYASNKLSIFK 354 (852)
Q Consensus 277 ~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l--~~~gv~v~~~~~~~~~~~~~~~ 354 (852)
.+..+.+|+++|++||++||+||||+||++++.... . +..+.+.| .++||+|..+|... .
T Consensus 378 -~D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~--~--------S~~~k~~L~~lh~gI~V~r~P~~~----~--- 439 (1068)
T PLN02866 378 -HDHESSRLDSLLEAKAKQGVQIYILLYKEVALALKI--N--------SVYSKRRLLGIHENVKVLRYPDHF----S--- 439 (1068)
T ss_pred -CCchHHHHHHHHHHHHHCCCEEEEEEECcccccccc--C--------chhhHHHHHHhCCCeEEEecCccc----c---
Confidence 124578999999999999999999999998642210 0 11222222 37899987554321 0
Q ss_pred hccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccc-cCCCCCCCCC------------
Q 045478 355 QQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVF-ANDFHNPSLP------------ 421 (852)
Q Consensus 355 ~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~-~~d~~n~~~~------------ 421 (852)
....+||||||+||||++ +||+||+|||.|||||++|++.|....+| ++||.|++..
T Consensus 440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ 509 (1068)
T PLN02866 440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE 509 (1068)
T ss_pred --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence 123678999999999998 99999999999999999999988655544 5799888642
Q ss_pred -CCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhcccccc------------cc---------------
Q 045478 422 -SHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHW------------YD--------------- 473 (852)
Q Consensus 422 -~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~------------~~--------------- 473 (852)
++...|||||||+||+|+||+|+||+++|++|||++++.+.. .....+| ..
T Consensus 510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~-~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~ 588 (1068)
T PLN02866 510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAP-NEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDN 588 (1068)
T ss_pred cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCc-cccccccccccccccccccccccccccccccccccc
Confidence 456778999999999999999999999999999998875410 0000000 00
Q ss_pred -------ccc---ccccccCCCCCCCCCC-------------------------C-------CC-CC-------------
Q 045478 474 -------DSL---INLDRIGITPSTGPHS-------------------------Y-------KP-TR------------- 497 (852)
Q Consensus 474 -------~~~---~~~~~~~~~~~~~P~~-------------------------~-------~~-~~------------- 497 (852)
++. .....++.+++..+.. . +. +.
T Consensus 589 ~~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 668 (1068)
T PLN02866 589 QKGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLS 668 (1068)
T ss_pred cccccccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0000111111100000 0 00 00
Q ss_pred --------------------------------CCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchh
Q 045478 498 --------------------------------AGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDK 545 (852)
Q Consensus 498 --------------------------------~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~ 545 (852)
.......+++.+||+||+..||+..- .+|+
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~~------------------~~E~ 730 (1068)
T PLN02866 669 VKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGTS------------------QVEE 730 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCCC------------------chHH
Confidence 00012245689999999988865321 2489
Q ss_pred HHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCC---
Q 045478 546 SIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPE--GNP--- 620 (852)
Q Consensus 546 sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~pe--g~~--- 620 (852)
||++||+++|++|+||||||||||++++.. +..+.|+|+.+|+.+|++|+++++.|+|+||+|++|+ |..
T Consensus 731 SI~~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~ 805 (1068)
T PLN02866 731 SIHAAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDG 805 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCc
Confidence 999999999999999999999999987532 3467999999999999999999999999999999996 433
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeE
Q 045478 621 NSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMI 700 (852)
Q Consensus 621 ~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 700 (852)
.+.+++++|+||++||++++.+|++.|++++.. +|.+|++||+|++++.... ++ ...+++|
T Consensus 806 ~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~---~p~dYisf~~LRn~~~l~~----------~~------~~vteqI 866 (1068)
T PLN02866 806 GAASVRAIMHWQYRTICRGKNSILHNLYDLLGP---KTHDYISFYGLRAYGRLFE----------GG------PLATSQI 866 (1068)
T ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCC---CHHHeEeeecccccccccC----------CC------cccceee
Confidence 345799999999999999999999999985321 7889999999999876410 00 1235689
Q ss_pred EEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCccccccc---CCCCCcchHHHHHHHHHHhcCCCcc---c
Q 045478 701 YVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAK---KSHPRGQVYGYRTSLWAEHLGTLED---T 774 (852)
Q Consensus 701 yvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~~~~~---~~~~~g~~~~lR~~Lw~ehlG~~~~---~ 774 (852)
|||||+|||||++++|||||||+|||.|+|||||+++++|++.+.... .-..++++++||++||+||||+..+ .
T Consensus 867 YVHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~ 946 (1068)
T PLN02866 867 YVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDK 946 (1068)
T ss_pred EEEeeEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhc
Confidence 999999999999999999999999999999999999999998763221 1234467999999999999999753 4
Q ss_pred cCCCCchHHHH-HHHHHHHHhHHHHh------------------------------------------------------
Q 045478 775 FREPQSLECMQ-RVNRIAGENWKAFV------------------------------------------------------ 799 (852)
Q Consensus 775 ~~~p~~~~~~~-~~~~~a~~n~~~~~------------------------------------------------------ 799 (852)
+.||.+.++++ .|+..|..|...|.
T Consensus 947 ~~DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~ 1026 (1068)
T PLN02866 947 IIDPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSD 1026 (1068)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhh
Confidence 67999998996 58999998864431
Q ss_pred -hhhccccccceeccceeeCCCCCcccCCC
Q 045478 800 -CDAHKEMRGHLMQYPVQISREGKVSTLPG 828 (852)
Q Consensus 800 -~~~~~~~~g~l~~~p~~~~~~~~~~~~~~ 828 (852)
.++++.++||||.||+.|++++.++|.-+
T Consensus 1027 ~~~~l~~I~G~lV~fPL~Fl~~E~L~p~~~ 1056 (1068)
T PLN02866 1027 PMERLKSVRGHLVSFPLDFMCQEDLRPVFN 1056 (1068)
T ss_pred HHHHHhhceEEEEechhhhhhhccCCCCcC
Confidence 13467899999999999999997765444
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=3.1e-49 Score=455.58 Aligned_cols=336 Identities=26% Similarity=0.310 Sum_probs=249.4
Q ss_pred ccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCC
Q 045478 201 KTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSF 280 (852)
Q Consensus 201 ~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~ 280 (852)
.+.+|...||.+++|.|| +++|++++++|++||++|+|++|++.++ .
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~d-------------~ 177 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKSD-------------E 177 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeCC-------------c
Confidence 356888999999999998 7999999999999999999999987552 3
Q ss_pred CcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccc
Q 045478 281 GELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGT 360 (852)
Q Consensus 281 ~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~ 360 (852)
.+..+.++|++||+|||+||||+ |+.||... .....+.|+++||+|..+.+... .++ ....
T Consensus 178 ~g~~i~~aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~---~~~---~~~~ 238 (509)
T PRK12452 178 IGTKVRDALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFS---AWL---LETV 238 (509)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCccc---ccc---cccc
Confidence 46899999999999999999996 99988531 24567788999999986543211 111 2346
Q ss_pred cccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeC
Q 045478 361 LFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEG 440 (852)
Q Consensus 361 ~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~G 440 (852)
++|||||++|||++ +||+||+|+++ +|.+.. ....+|||+|++++|
T Consensus 239 n~RnHRKi~VIDg~--------ia~~GG~Ni~d-~y~~~~-------------------------~~~~~WrD~~~~i~G 284 (509)
T PRK12452 239 NYRNHRKIVIVDGE--------IGFTGGLNVGD-EYLGRS-------------------------KKFPVWRDSHLKVEG 284 (509)
T ss_pred cCCCCCeEEEEcCC--------EEEeCCcccch-hhcCCC-------------------------CCCCCceEEEEEEEC
Confidence 78999999999999 99999999999 554321 124689999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCC
Q 045478 441 PAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSV 520 (852)
Q Consensus 441 paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~ 520 (852)
|+|.+++..|.++|+.+++... . ..|.. .. ..++. |. .....+...+|++.+-
T Consensus 285 p~V~~l~~~F~~dW~~~~~~~~---~--~~~~~--~~---~~~~~----~~--------~~~~~~~~~~q~~~sg----- 337 (509)
T PRK12452 285 KALYKLQAIFLEDWLYASSGLN---T--YSWDP--FM---NRQYF----PG--------KEISNAEGAVQIVASG----- 337 (509)
T ss_pred HHHHHHHHHHHHHHHHhhCccc---c--ccccc--cc---chhcC----CC--------ccccCCCeEEEEEeCC-----
Confidence 9999999999999998765310 0 00000 00 00000 10 0011234578988763
Q ss_pred CCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHH
Q 045478 521 KGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKI 600 (852)
Q Consensus 521 ~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~ 600 (852)
|.. .+.+|+++|+++|.+||++|||++|||++ +. .+..++..|
T Consensus 338 ---p~~----------------~~~~i~~~~l~~I~~A~~~I~I~tpYf~p------d~-----------~l~~aL~~A- 380 (509)
T PRK12452 338 ---PSS----------------DDKSIRNTLLAVMGSAKKSIWIATPYFIP------DQ-----------ETLTLLRLS- 380 (509)
T ss_pred ---CCc----------------hhHHHHHHHHHHHHHhhhEEEEECCccCC------CH-----------HHHHHHHHH-
Confidence 111 14689999999999999999999999994 32 233334333
Q ss_pred HcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCcccc
Q 045478 601 NANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQM 680 (852)
Q Consensus 601 ~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~ 680 (852)
+.+||+|+|++|. .+|+. +.+++.+++ ++.|.++|+++ | +|.+
T Consensus 381 -a~rGV~Vrii~p~----~~D~~----~~~~a~~~~-------~~~L~~aGv~I-~-------------------~y~~- 423 (509)
T PRK12452 381 -AISGIDVRILYPG----KSDSI----ISDQASQSY-------FTPLLKAGASI-Y-------------------SYKD- 423 (509)
T ss_pred -HHcCCEEEEEcCC----CCChH----HHHHHHHHH-------HHHHHHcCCEE-E-------------------EecC-
Confidence 2388999999995 33432 334555543 78999999986 2 1332
Q ss_pred chhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 681 NQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
.++|+|+|||||++++|||+|||.||+..| .|+++.++|++.+
T Consensus 424 -------------------~~lHaK~~ivD~~~a~vGS~Nld~RS~~~n--~E~~~~i~~~~~~ 466 (509)
T PRK12452 424 -------------------GFMHAKIVLVDDKIATIGTANMDVRSFELN--YEIISVLYESETV 466 (509)
T ss_pred -------------------CCeeeeEEEECCCEEEEeCcccCHhHhhhh--hhccEEEECHHHH
Confidence 589999999999999999999999999855 9999999998543
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=5.6e-48 Score=444.90 Aligned_cols=334 Identities=24% Similarity=0.324 Sum_probs=247.5
Q ss_pred ccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCC
Q 045478 201 KTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSF 280 (852)
Q Consensus 201 ~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~ 280 (852)
.+.+|...||+|++|.|| +++|++|+++|++||++|+|++|++.+ + .
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~-------d------~ 153 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRP-------D------G 153 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEcc-------C------C
Confidence 456788999999999997 789999999999999999999998754 2 3
Q ss_pred CcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccc
Q 045478 281 GELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGT 360 (852)
Q Consensus 281 ~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~ 360 (852)
.+.++.++|.+||+|||+||||+ |+.|+.... .+...+.|++.||++..+.+.. ..++. ....
T Consensus 154 ~g~~i~~aL~~aa~rGV~VriL~-D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~--~~~~~---~~~~ 216 (483)
T PRK01642 154 LGDQVAEALIAAAKRGVRVRLLY-DSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVN--LGRVF---RRRL 216 (483)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCC--ccccc---cccc
Confidence 46899999999999999999995 999875421 2336677889999998652211 11111 2346
Q ss_pred cccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeC
Q 045478 361 LFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEG 440 (852)
Q Consensus 361 ~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~G 440 (852)
++|+|+|++|||++ +||+||+|+++.+|.+. .....+|||+|++++|
T Consensus 217 n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~-------------------------~~~~~~w~D~~~~i~G 263 (483)
T PRK01642 217 DLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ-------------------------DPGVGQWRDTHVRIEG 263 (483)
T ss_pred ccccCceEEEEcCC--------EEEeCCcccCCHHHhCC-------------------------CCCCCCcEEEEEEEEc
Confidence 78999999999998 99999999999444321 1123689999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCC
Q 045478 441 PAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSV 520 (852)
Q Consensus 441 paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~ 520 (852)
|+|.+++..|.++|+.+++... ........ .++ ....+...+|++.+-
T Consensus 264 p~v~~l~~~F~~dW~~~~~~~~-------------~~~~~~~~-----~~~---------~~~~~~~~~qi~~sg----- 311 (483)
T PRK01642 264 PVVTALQLIFAEDWEWETGERI-------------LPPPPDVL-----IMP---------FEEASGHTVQVIASG----- 311 (483)
T ss_pred HHHHHHHHHHHHHHHHHhCccc-------------CCCCcccc-----cCC---------ccCCCCceEEEEeCC-----
Confidence 9999999999999998765410 00000000 000 111234578888652
Q ss_pred CCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHH
Q 045478 521 KGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKI 600 (852)
Q Consensus 521 ~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~ 600 (852)
|.. .+..++++|+++|.+||++|||++|||++ +. +...|++.|+
T Consensus 312 ---P~~----------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip------~~---------~i~~aL~~Aa-- 355 (483)
T PRK01642 312 ---PGD----------------PEETIHQFLLTAIYSARERLWITTPYFVP------DE---------DLLAALKTAA-- 355 (483)
T ss_pred ---CCC----------------hhhHHHHHHHHHHHHhccEEEEEcCCcCC------CH---------HHHHHHHHHH--
Confidence 221 14679999999999999999999999994 22 2333444443
Q ss_pred HcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCcccc
Q 045478 601 NANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQM 680 (852)
Q Consensus 601 ~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~ 680 (852)
.+||+|+||+|..+ +.. +.++..+++ ++.|.++|+++ | +|.+
T Consensus 356 --~rGV~Vril~p~~~----d~~----~~~~~~~~~-------~~~L~~~Gv~I-~-------------------~y~~- 397 (483)
T PRK01642 356 --LRGVDVRIIIPSKN----DSL----LVFWASRAF-------FTELLEAGVKI-Y-------------------RYEG- 397 (483)
T ss_pred --HcCCEEEEEeCCCC----CcH----HHHHHHHHH-------HHHHHHcCCEE-E-------------------EeCC-
Confidence 38899999999643 332 344555554 68888999876 2 1322
Q ss_pred chhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 681 NQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
.++|||+|||||++++|||+|||.||+..| .|+++.++|++++
T Consensus 398 -------------------~~~HaK~~ivD~~~~~vGS~N~d~rS~~~N--~E~~~~i~d~~~~ 440 (483)
T PRK01642 398 -------------------GLLHTKSVLVDDELALVGTVNLDMRSFWLN--FEITLVIDDTGFA 440 (483)
T ss_pred -------------------CceEeEEEEECCCEEEeeCCcCCHhHHhhh--hcceEEEECHHHH
Confidence 489999999999999999999999999855 9999999998644
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=1.6e-46 Score=421.11 Aligned_cols=342 Identities=20% Similarity=0.263 Sum_probs=245.8
Q ss_pred cccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcch
Q 045478 205 PLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELS 284 (852)
Q Consensus 205 p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~ 284 (852)
+.+.||+|+++.|| +++|++++++|++||++|+|++|+|.++ ..+..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~d-------------~~g~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFED-------------KVGKQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEecC-------------chHHH
Confidence 56799999999998 7999999999999999999999987542 34589
Q ss_pred HHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccC
Q 045478 285 FGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTH 364 (852)
Q Consensus 285 l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~h 364 (852)
|.++|++||+|||+||||+ |..||... ++...+.|.++||++..+.+.+ .++. .....+.++
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~----~~~~-~~~~~~~R~ 111 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRP----RLLG-MRTNLFRRM 111 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCcc----cccc-cccccccCC
Confidence 9999999999999999996 99887532 2456778899999998654321 1110 012233599
Q ss_pred ccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHH
Q 045478 365 HQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAY 444 (852)
Q Consensus 365 HqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~ 444 (852)
|+|++|||++ +||+||+|+++.++.. ....+|+|++++|+||+|.
T Consensus 112 HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V~ 156 (411)
T PRK11263 112 HRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVVA 156 (411)
T ss_pred cceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHHH
Confidence 9999999998 9999999999833210 1124799999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCC
Q 045478 445 DILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFP 524 (852)
Q Consensus 445 dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p 524 (852)
+++..|.+.|....... ..|.. ... +. .....+...+|++.+- |
T Consensus 157 ~l~~~f~~~w~~~~~~~-------~~~~~--------~~~-----~~--------~~~~~g~~~~~~v~~~--------p 200 (411)
T PRK11263 157 DIHQFELEALPGQSAAR-------RWWRR--------HHR-----AE--------ENRQPGEAQALLVWRD--------N 200 (411)
T ss_pred HHHHHHHHHHhhcccch-------hhhcc--------ccc-----Cc--------ccCCCCCeEEEEEECC--------C
Confidence 99999999997432110 00000 000 00 0112344467776431 1
Q ss_pred CChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCC
Q 045478 525 KDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANE 604 (852)
Q Consensus 525 ~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~ 604 (852)
. .....|+++|+.+|.+||+.|||+||||++ +. .+..+|..| +.+
T Consensus 201 ~----------------~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p------~~-----------~l~~aL~~A--a~R 245 (411)
T PRK11263 201 E----------------EHRDDIERHYLKALRQARREVIIANAYFFP------GY-----------RLLRALRNA--ARR 245 (411)
T ss_pred c----------------chHHHHHHHHHHHHHHhceEEEEEecCcCC------CH-----------HHHHHHHHH--HHC
Confidence 1 113679999999999999999999999994 22 233334343 238
Q ss_pred CcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhh
Q 045478 605 RFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQT 684 (852)
Q Consensus 605 ~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~ 684 (852)
||+|+||+|. .++.. ++.+..+. +++.|+++|+++ | +|.+
T Consensus 246 GV~V~ii~~~----~~d~~----~~~~a~~~-------~~~~Ll~~Gv~I-~-------------------~y~~----- 285 (411)
T PRK11263 246 GVRVRLILQG----EPDMP----IVRVGARL-------LYNYLLKGGVQI-Y-------------------EYCR----- 285 (411)
T ss_pred CCEEEEEeCC----CCCcH----HHHHHHHH-------HHHHHHHCCCEE-E-------------------EecC-----
Confidence 8999999994 34443 33344443 378899999986 2 1321
Q ss_pred hhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCcccccccCCCCCcchHHHHHHHH
Q 045478 685 ENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLW 764 (852)
Q Consensus 685 ~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~~~~~~~~~~g~~~~lR~~Lw 764 (852)
.++|+|+|||||++++|||+|||.|||..| .|+++.|+|++++ .++.....+++
T Consensus 286 ---------------~~lHaK~~viD~~~~~vGS~Nld~rS~~lN--~E~~~~i~d~~~a---------~~l~~~~~~~~ 339 (411)
T PRK11263 286 ---------------RPLHGKVALMDDHWATVGSSNLDPLSLSLN--LEANLIIRDRAFN---------QTLRDNLNGLI 339 (411)
T ss_pred ---------------CCceeEEEEECCCEEEEeCCcCCHHHhhhh--hhcCEEEeCHHHH---------HHHHHHHHHHH
Confidence 489999999999999999999999999865 9999999998654 13344455566
Q ss_pred HHhcC
Q 045478 765 AEHLG 769 (852)
Q Consensus 765 ~ehlG 769 (852)
+||.-
T Consensus 340 ~~~s~ 344 (411)
T PRK11263 340 AADCQ 344 (411)
T ss_pred HhhCE
Confidence 65543
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=2.7e-35 Score=339.05 Aligned_cols=337 Identities=24% Similarity=0.323 Sum_probs=234.1
Q ss_pred cccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHH
Q 045478 207 RKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFG 286 (852)
Q Consensus 207 ~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~ 286 (852)
..++.++++.++ .+.|.+++++|++|+++|+++.|.+.+ + ..+..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~-------d------~~~~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQD-------D------ELGREIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeC-------C------hhHHHHH
Confidence 588889999886 788999999999999999999887644 2 3468999
Q ss_pred HHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCC-EEEecCCCCCCcchhhhhccccccccCc
Q 045478 287 ELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSV-NCVLAPRYASNKLSIFKQQVVGTLFTHH 365 (852)
Q Consensus 287 ~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~v~~~~~~~~~~~~~~~~~~~~~~~~hH 365 (852)
++|.++|++||+||+|+ |+.++.... .......++++++ ++....+... ... .....+.++|
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~--~~~---~~~~~~~r~H 166 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRGL-----------LKSLLALLKRAGIEEVRLFNPASP--RPL---RFRRLNRRLH 166 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCcccc-----------cHHHHHHHhcCCceEEEecCCccc--ccc---hhhhhhcccc
Confidence 99999999999999997 998763211 2356777888999 6554432211 010 1234567999
Q ss_pred cceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHH
Q 045478 366 QKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYD 445 (852)
Q Consensus 366 qK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~d 445 (852)
+|++|||+. ++|+||.|+.+.++... ....+|+|++++++||+|.+
T Consensus 167 ~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~~ 212 (438)
T COG1502 167 RKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVAD 212 (438)
T ss_pred ceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHHH
Confidence 999999998 99999999999554321 02248999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCC
Q 045478 446 ILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPK 525 (852)
Q Consensus 446 l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~ 525 (852)
+..+|.++|+....... .+.. .. .+.. +. ...........+|++.+.+.. ..+.
T Consensus 213 l~~~f~~~w~~~~~~~~-~~~~--------~~----~~~~----~~------~~~~~~~~~~~~~~~~~~P~~---~~~~ 266 (438)
T COG1502 213 LARLFIQDWNLESGSSK-PLLA--------LV----RPPL----QS------LSLLPVGRGSTVQVLSSGPDK---GLGS 266 (438)
T ss_pred HHHHHHHHhhhccCcCc-cccc--------cc----cccc----cc------ccccccccCcceEEEecCCcc---ccch
Confidence 99999999998743320 0000 00 0000 00 000011122236777653211 1000
Q ss_pred ChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCC
Q 045478 526 DVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANER 605 (852)
Q Consensus 526 ~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~ 605 (852)
....+...|+.+|.+|+++|+|++|||++. . ++..++..+ +.+|
T Consensus 267 -----------------~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~------~-----------~~~~al~~a--~~~G 310 (438)
T COG1502 267 -----------------ELIELNRLLLKAINSARESILIATPYFVPD------R-----------ELLAALKAA--ARRG 310 (438)
T ss_pred -----------------hhhhHHHHHHHHHHhhceEEEEEcCCcCCC------H-----------HHHHHHHHH--HhcC
Confidence 011245899999999999999999999953 2 344445544 3478
Q ss_pred cEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhh
Q 045478 606 FSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTE 685 (852)
Q Consensus 606 v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~ 685 (852)
|+|+|++|.. +.++.. ++++..+. .+..|.+.|+++ | +|.+
T Consensus 311 v~V~ii~~~~--~~~d~~----~~~~~~~~-------~~~~l~~~gv~i-~-------------------~~~~------ 351 (438)
T COG1502 311 VDVRIIIPSL--GANDSA----IVHAAYRA-------YLKELLEAGVKV-Y-------------------EYPG------ 351 (438)
T ss_pred CEEEEEeCCC--CCCChH----HHHHHHHH-------HHHHHHHhCCEE-E-------------------EecC------
Confidence 9999999953 223332 33344443 378888999875 2 1221
Q ss_pred hHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 686 NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 686 ~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
..++|+|+|||||++++|||+|||.||+.+| +|++++|+|+.+
T Consensus 352 -------------g~~lH~K~~iiD~~~~~vGS~N~~~rS~~lN--~E~~~~i~d~~~ 394 (438)
T COG1502 352 -------------GAFLHSKVMIIDDRTVLVGSANLDPRSLRLN--FEVGLVIEDPEL 394 (438)
T ss_pred -------------CCcceeeEEEEcCCEEEEeCCcCCHhHHHHh--hhheeEEeCHHH
Confidence 0399999999999999999999999999966 999999999844
No 10
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=329.84 Aligned_cols=327 Identities=15% Similarity=0.178 Sum_probs=210.9
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
...|+.+.++|.+||++|+|+.+.|.++ +.. ....+.+|.++|++||+|||+||||+ |..+.
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~-----d~~---~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~--------- 86 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSLS-----DEV---GTNFGTMILNEIIQLPKRGVRVRIAV-NKSNK--------- 86 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEecC-----ccc---cchhHHHHHHHHHHHHHCCCEEEEEE-CCCCC---------
Confidence 3568889999999999999999877531 110 00125789999999999999999996 86431
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
.....+.|+++||+++.++... ....++|+|++|||++ ++|+||+|+++ |+.+
T Consensus 87 ------~~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~ 139 (424)
T PHA02820 87 ------PLKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT 139 (424)
T ss_pred ------chhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence 1133466888999998654211 1235899999999998 99999999977 6643
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeee--eChHHHHHHHHHHHHHhhhhhhhhhhhccccccccccc
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKV--EGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSL 476 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v--~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~ 476 (852)
..+|+++.+ +||+|.+|++.|.++|+.+++.. . ..|..
T Consensus 140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~----~--~~~~~--- 179 (424)
T PHA02820 140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL----P--YNWKN--- 179 (424)
T ss_pred -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC----C--Ccccc---
Confidence 123667776 79999999999999999865321 0 00100
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHH
Q 045478 477 INLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIR 556 (852)
Q Consensus 477 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~ 556 (852)
.++ ...+...+. . ....+....|++.+. |... ++. ......++|+.+|.
T Consensus 180 ----~~~---~~~~~~~p~--~--~~~~~~~~~~~~sss--------P~~~---------~~~---~r~~~~~~~l~~I~ 228 (424)
T PHA02820 180 ----FYP---LYYNTDHPL--S--LNVSGVPHSVFIASA--------PQQL---------CTM---ERTNDLTALLSCIR 228 (424)
T ss_pred ----ccc---cccccCCCc--c--cccCCccceEEEeCC--------Chhh---------cCC---CCCchHHHHHHHHH
Confidence 000 000100000 0 001111123343331 1100 000 01235789999999
Q ss_pred hccceEEEeecccccCCC-------CCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHH
Q 045478 557 SAQHFIYIENQYFIGSSY-------HWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEIL 629 (852)
Q Consensus 557 ~Ak~~IyIEnqYFi~~~~-------~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~ 629 (852)
+||++|||+++||++... .|| .+..|++-|+ +.|||+|+|++|.|+. +..+.
T Consensus 229 ~Ak~~I~I~tpyfvP~~~~~~~~~~yw~-----------~i~~AL~~AA---~~RGV~VriLvp~~~d----~~~~~--- 287 (424)
T PHA02820 229 NASKFVYVSVMNFIPIIYSKAGKILFWP-----------YIEDELRRAA---IDRKVSVKLLISCWQR----SSFIM--- 287 (424)
T ss_pred HHhhEEEEEEccccceeeccCCcccchH-----------HHHHHHHHHH---HhCCCEEEEEEeccCC----CCccH---
Confidence 999999999999997621 343 1223333222 2488999999997653 22221
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEE
Q 045478 630 YWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIV 709 (852)
Q Consensus 630 ~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 709 (852)
++... .++.|.++|+++ ++++|....+.. ..| ...++|||+|||
T Consensus 288 -~a~~~-------~l~~L~~~gv~I------~Vk~y~~p~~~~----~~~------------------~~~f~HaK~~vv 331 (424)
T PHA02820 288 -RNFLR-------SIAMLKSKNINI------EVKLFIVPDADP----PIP------------------YSRVNHAKYMVT 331 (424)
T ss_pred -HHHHH-------HHHHHhccCceE------EEEEEEcCcccc----cCC------------------cceeeeeeEEEE
Confidence 22222 257788889876 366774321110 000 125999999999
Q ss_pred cceeEEecCcCcccCCCCCCCCceeEEEEecC
Q 045478 710 DDEYVIMGSANINQRSLEGSRDTEIAMGAYQP 741 (852)
Q Consensus 710 DD~~~iIGSANln~RSm~~n~DsEi~v~i~d~ 741 (852)
|| ++.|||||||.|||..| .|+++.++|+
T Consensus 332 D~-~a~IGTsN~D~rsf~~n--~ev~~~i~~~ 360 (424)
T PHA02820 332 DK-TAYIGTSNWTGNYFTDT--CGVSINITPD 360 (424)
T ss_pred cc-cEEEECCcCCHHHHhcc--CcEEEEEecC
Confidence 97 69999999999999977 9999999886
No 11
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=7.1e-34 Score=320.95 Aligned_cols=349 Identities=17% Similarity=0.170 Sum_probs=217.3
Q ss_pred CccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCc
Q 045478 203 YFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGE 282 (852)
Q Consensus 203 ~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~ 282 (852)
.+|. .++.++++.+| +++|++|+++|++|+++|+|++|+|..+ ..+
T Consensus 19 ~~~~-~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D-------------~~g 64 (451)
T PRK09428 19 KIPQ-SPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLEDD-------------EAG 64 (451)
T ss_pred Cccc-CcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecCC-------------chH
Confidence 4555 77889999987 7899999999999999999999987542 456
Q ss_pred chHHHHHHHhh--hcCCeEEEEEeCCC-------cccccccccccccccCCcHHHHhhhcCC--CCEEEecCCCCCCcch
Q 045478 283 LSFGELLKHKS--QEGVRVLLLIWDDK-------TSHDNLFIKTEGVMQTHDEETRKFFKHS--SVNCVLAPRYASNKLS 351 (852)
Q Consensus 283 ~~l~~~L~~~a--~~GV~VriLvwD~~-------~s~~~~~~~~~~~~~~~~~~~~~~l~~~--gv~v~~~~~~~~~~~~ 351 (852)
..|.++|.+|+ ++||+|+||+ |.. |+... .........|+++ ||++.++.. |..
T Consensus 65 ~~il~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~~----------~~~~~~~~~l~~~~~gv~v~~f~~-p~~--- 129 (451)
T PRK09428 65 REILDALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAAS----------NTNADWYCEMAQEYPGVDIPVYGV-PVN--- 129 (451)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEE-EcccccccccccCCC----------CcCHHHHHHHHHhCCCceEEEcCC-ccc---
Confidence 89999999885 4899999997 974 32210 0123455556543 689887631 211
Q ss_pred hhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCce
Q 045478 352 IFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPW 431 (852)
Q Consensus 352 ~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pW 431 (852)
....+.++|+|++|||++ |+|+| .||.+ .|.+. + .. ..
T Consensus 130 -----~~e~~gr~HrKi~IiD~~--------v~ysG-aNi~d-~Yl~~-~------------------------~~--~r 167 (451)
T PRK09428 130 -----TREALGVLHLKGFIIDDT--------VLYSG-ASLNN-VYLHQ-H------------------------DK--YR 167 (451)
T ss_pred -----cchhhhhceeeEEEECCC--------EEEec-ccccH-HHhcC-C------------------------cc--cC
Confidence 112456899999999998 99997 79999 55321 0 01 12
Q ss_pred eeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhccccccccc--cc---cc-c-cccCCCCCCCCCCCCCCCCCCCCCC
Q 045478 432 HDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDD--SL---IN-L-DRIGITPSTGPHSYKPTRAGSEKET 504 (852)
Q Consensus 432 hDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~--~~---~~-~-~~~~~~~~~~P~~~~~~~~~~~~~~ 504 (852)
.|..++|+||++.++...|.+.|..++.... .+.. .|... .. .. + ..+. ... .......
T Consensus 168 ~Dry~~i~g~~la~~~~~fi~~~~~~~~~v~-~l~~--~~~~~~~~~~~~~~~~~~~l~------~~~-----~~~~~~~ 233 (451)
T PRK09428 168 YDRYHLIRNAELADSMVNFIQQNLLNSPAVN-RLDQ--PNRPKTKEIKNDIRQFRQRLR------DAA-----YQFQGQA 233 (451)
T ss_pred cceEEEEeCchHHHHHHHHHHHHhhccCccc-cccc--cccccchhhHHHHHHHHHHHh------hhc-----cCccccc
Confidence 3778889999999999999999987543210 0000 00000 00 00 0 0000 000 0000001
Q ss_pred CCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCC
Q 045478 505 ENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGA 584 (852)
Q Consensus 505 ~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~ 584 (852)
+.-.+++.... |.+. ...+.+.+..+|.+|++.|+|.||||+++
T Consensus 234 ~~~~~~v~p~~----------------------g~g~--~~~l~~~~~~li~~A~~~i~I~TPYF~p~------------ 277 (451)
T PRK09428 234 NNDELSVTPLV----------------------GLGK--KNLLNKTIFHLMASAEQKLTICTPYFNLP------------ 277 (451)
T ss_pred CCCCeEEeeee----------------------ccCC--chHHHHHHHHHHhccCcEEEEEeCCcCCC------------
Confidence 11123333221 1111 25678899999999999999999999952
Q ss_pred CCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHH-------HHHHHHHCC---CCC
Q 045478 585 DNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKI-------VAQALQDNG---LSN 654 (852)
Q Consensus 585 ~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~-------i~~~L~~~G---v~~ 654 (852)
..+...+..++ .+|++|.||+|..-..+--.+..+.++.+....+ .|.. ..+.|.++| +++
T Consensus 278 -----~~l~~~L~~a~--~rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G~l~v~i 348 (451)
T PRK09428 278 -----AILVRNIIRLL--RRGKKVEIIVGDKTANDFYIPPDEPFKIIGALPY--LYEINLRRFAKRLQYYIDNGQLNVRL 348 (451)
T ss_pred -----HHHHHHHHHHH--hcCCcEEEEcCCcccccCcCCCccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcCcceEEE
Confidence 23444555553 3779999999964211100001112222333221 1111 122445555 432
Q ss_pred CCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCcee
Q 045478 655 KYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEI 734 (852)
Q Consensus 655 ~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi 734 (852)
|. |. .-.+|+|.|+|||++++|||+|||.||+. .|.|+
T Consensus 349 ----------~~----------~~--------------------~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~ 386 (451)
T PRK09428 349 ----------WK----------DG--------------------DNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLEN 386 (451)
T ss_pred ----------Ee----------cC--------------------CCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccc
Confidence 21 21 24899999999999999999999999998 56999
Q ss_pred EEEEecCcc
Q 045478 735 AMGAYQPHY 743 (852)
Q Consensus 735 ~v~i~d~~~ 743 (852)
++.|+|++.
T Consensus 387 ~l~i~d~~~ 395 (451)
T PRK09428 387 ALLIHDPKQ 395 (451)
T ss_pred eEEEECChH
Confidence 999999853
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=1.3e-33 Score=314.70 Aligned_cols=319 Identities=16% Similarity=0.159 Sum_probs=202.0
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
-.+|++++++|++||++|+|+.|++.- +++ ..+.+|.++|++||+|||+||||+ |..++
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~-----~~d------~~g~~i~~aL~~aa~rGV~Vril~-D~~~~--------- 88 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCNL-----RST------PEGRLILDKLKEAAESGVKVTILV-DEQSG--------- 88 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEecc-----cCC------chHHHHHHHHHHhccCCCeEEEEe-cCCCC---------
Confidence 368999999999999999999997311 112 456899999999999999999996 97643
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
....+.|+.+||++....... ....+.+|.|++|||++ +||+||+||++ +|-+
T Consensus 89 -------~~~~~~L~~~Gv~v~~~~~~~-----------~~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~~~ 141 (369)
T PHA03003 89 -------DKDEEELQSSNINYIKVDIGK-----------LNNVGVLLGSFWVSDDR--------RCYIGNASLTG-GSIS 141 (369)
T ss_pred -------CccHHHHHHcCCEEEEEeccc-----------cCCCCceeeeEEEEcCc--------EEEEecCccCC-cccC
Confidence 134567888999987543110 00012458899999999 99999999999 6644
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhccccccccccccc
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLIN 478 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
..|. ...|+|. ||+|.+|++.|.+.|+.+++... .. .
T Consensus 142 ~~~~-------------------------~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~--~~-----------~ 178 (369)
T PHA03003 142 TIKT-------------------------LGVYSTY-----PPLATDLRRRFDTFKAFNKNKSV--FN-----------R 178 (369)
T ss_pred cccc-------------------------ceeEecC-----cHHHHHHHHHHHHHHHhcCCCCc--cc-----------c
Confidence 3221 2479993 99999999999999997654320 00 0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhc
Q 045478 479 LDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSA 558 (852)
Q Consensus 479 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~A 558 (852)
.. ..+. .|...+ .. ...+ ...+++.+ + |... +.. ....++++|+++|.+|
T Consensus 179 ~~-~~~~---~~~~~~---~~-~~~~--~~~~~~~s---~-----P~~~---------~~~---~~~~~~~~ll~~I~~A 228 (369)
T PHA03003 179 LC-CACC---LPVSTK---YH-INNP--IGGVFFSD---S-----PEHL---------LGY---SRTLDADVVLHKIKSA 228 (369)
T ss_pred cc-cccC---Cccccc---cc-ccCC--CcceEEec---C-----ChHH---------cCC---CCCcCHHHHHHHHHHH
Confidence 00 0000 000000 00 0000 11123322 1 1100 000 0124688999999999
Q ss_pred cceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHH
Q 045478 559 QHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSM 638 (852)
Q Consensus 559 k~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~ 638 (852)
|++|+|+++||++.... +. . . .....+..+|.++. +.+||+|+|++|.+.. .+. . ..
T Consensus 229 k~~I~I~t~yf~P~~~~--d~-~--~--~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~--~~~-~--------~~---- 285 (369)
T PHA03003 229 KKSIDLELLSLVPVIRE--DD-K--T--TYWPDIYNALIRAA-INRGVKVRLLVGSWKK--NDV-Y--------SM---- 285 (369)
T ss_pred hhEEEEEEeccccEEee--CC-C--C--ccHHHHHHHHHHHH-HcCCCEEEEEEecCCc--CCc-h--------hh----
Confidence 99999999999853210 00 0 0 00124445544431 2588999999996421 111 0 11
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecC
Q 045478 639 MYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGS 718 (852)
Q Consensus 639 ~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGS 718 (852)
...+.|+++|++. .-.+++|. ...|+|+|||||++++|||
T Consensus 286 ---~~~~~L~~~G~~~----~i~vri~~---------------------------------~~~H~K~~VVD~~~a~iGS 325 (369)
T PHA03003 286 ---ASVKSLQALCVGN----DLSVKVFR---------------------------------IPNNTKLLIVDDEFAHITS 325 (369)
T ss_pred ---hHHHHHHHcCCCC----CceEeeec---------------------------------CCCCceEEEEcCCEEEEec
Confidence 1267888999642 01122221 0179999999999999999
Q ss_pred cCcccCCCCCCCCceeEEEEecCcc
Q 045478 719 ANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 719 ANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
+||+.||+..| .|+++.++++..
T Consensus 326 ~N~d~~s~~~~--~e~~~~~~~~~~ 348 (369)
T PHA03003 326 ANFDGTHYLHH--AFVSFNTIDKEL 348 (369)
T ss_pred cccCchhhccC--CCeEEecCChhH
Confidence 99999999865 999887776643
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.94 E-value=3.7e-26 Score=224.85 Aligned_cols=157 Identities=46% Similarity=0.770 Sum_probs=134.5
Q ss_pred ceeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCC
Q 045478 22 PVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCE 101 (852)
Q Consensus 22 ~~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~ 101 (852)
.+||||+|+|+|++|++|++||.+++.+++|++++..|............+....++||||+|++++.+++||+++.++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 47899999999999999999999888888888875433222110000122234566999999999998889999999999
Q ss_pred CCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 102 NPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 102 nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
||+|||+|.|++++....+.|+|+|++.+++++||++.||+.++..|...+.|++|.+..++++++.++|+|+++|+
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999999888999999999999999999999999999999999999999988899989999999999995
No 14
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.90 E-value=1.5e-24 Score=177.19 Aligned_cols=73 Identities=53% Similarity=1.090 Sum_probs=71.2
Q ss_pred ccccCCCCchHHHHHHHHHHHHhHHHHhhhhccccccceeccceeeCCCCCcccCCCCCCCCCCCCcccccCC
Q 045478 772 EDTFREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPT 844 (852)
Q Consensus 772 ~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (852)
++.|.+|+|++|++++|++|++||++|+++++++|+|||+.||+.++.||++++|||++.||||+|+|||++|
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSKS 74 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999986
No 15
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.85 E-value=1.3e-20 Score=181.11 Aligned_cols=127 Identities=27% Similarity=0.488 Sum_probs=114.2
Q ss_pred eeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCC
Q 045478 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCEN 102 (852)
Q Consensus 23 ~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~n 102 (852)
..+...|.|.|+||++|+.+ .+|||+|.+++++++||+++.++.|
T Consensus 7 ~R~~~sL~v~V~EAk~Lp~~-----------------------------------~~~Y~~i~Ld~~~vaRT~v~~~~~n 51 (146)
T cd04013 7 RRTENSLKLWIIEAKGLPPK-----------------------------------KRYYCELCLDKTLYARTTSKLKTDT 51 (146)
T ss_pred eEEEEEEEEEEEEccCCCCc-----------------------------------CCceEEEEECCEEEEEEEEEcCCCC
Confidence 45688899999999999864 4899999999999999999999999
Q ss_pred CeeeeEEEEeecCCCceEEEEEEe-cCCC----CCceeeeEeeeceeccCCCceeeeeeeccCCCCC-------CCCCCE
Q 045478 103 PFWDEHFCVPVAHSVVNLEFHVKD-NDIL----GAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN-------LKPFPQ 170 (852)
Q Consensus 103 P~WnE~f~~~~~~~~~~l~~~V~d-~d~~----~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~-------~k~~g~ 170 (852)
|.|+|+|+|++.|+...++|.|++ .+.. ++++||++.||++++..|..+++||+|++..+.+ ++..++
T Consensus 52 P~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~ 131 (146)
T cd04013 52 LFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPS 131 (146)
T ss_pred CcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCE
Confidence 999999999999999999999954 4443 4789999999999999999999999999888877 677899
Q ss_pred EEEEEEeeecCCcc
Q 045478 171 LHVSMQYKPIGQIP 184 (852)
Q Consensus 171 l~l~l~f~~~~~~~ 184 (852)
||++++|.++...|
T Consensus 132 lrik~rf~~~~~lP 145 (146)
T cd04013 132 IRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEEEEEeeeCC
Confidence 99999999987765
No 16
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1.4e-20 Score=176.14 Aligned_cols=117 Identities=22% Similarity=0.491 Sum_probs=104.5
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecC-CCCCee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISN-CENPFW 105 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~-s~nP~W 105 (852)
|+|+|+|++|++|++.+ +++ +||||+|.+++.+ .||+++.+ +.||+|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~------------------------------sDPYv~i~lg~~~-~kT~v~~~~~~nP~W 49 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR------------------------------MDPYCRIRVGHAV-YETPTAYNGAKNPRW 49 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC------------------------------CCceEEEEECCEE-EEeEEccCCCCCCcc
Confidence 89999999999998877 666 9999999999887 59999876 799999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeece-eccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVE-KILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~-~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
||+|+|.+++....+.|+|+|+|.++ |++||.+.|++. .+..|+..+.||+|....++ +..|+|+|+|+|
T Consensus 50 Ne~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--~~~g~i~l~l~y 121 (121)
T cd04016 50 NKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--DKEGMINLVFSY 121 (121)
T ss_pred CeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--CCceEEEEEEeC
Confidence 99999999987788999999999998 899999999995 68889889999999765554 356999999987
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=3.3e-19 Score=167.87 Aligned_cols=114 Identities=24% Similarity=0.334 Sum_probs=103.8
Q ss_pred EEEEEEEecC---CCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 29 LDLSILEAKS---LPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 29 L~v~I~~A~~---L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
|+|+|++|++ |+.+|..+. +||||+|.+++.+ .||+++.++.||+|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~------------------------------sDPYv~i~~g~~~-~rTk~~~~~~nP~W 50 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS------------------------------TDAYCVAKYGPKW-VRTRTVEDSSNPRW 50 (126)
T ss_pred eEEEEEEeECCccccccccCCC------------------------------CCeeEEEEECCEE-eEcCcccCCCCCcc
Confidence 8999999999 888887766 9999999998887 79999999999999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCC-------CCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEE
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDIL-------GAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHV 173 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~-------~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l 173 (852)
||+|.|++.++...++|+|||++.+ ++++||++.|++..+..+...+.||+|.+..+++.+..|+|+.
T Consensus 51 nE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 51 NEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred eeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999999998888899999999886 6999999999999999999999999998777667788899875
No 18
>PRK05443 polyphosphate kinase; Provisional
Probab=99.80 E-value=2.8e-18 Score=202.28 Aligned_cols=266 Identities=14% Similarity=0.183 Sum_probs=182.6
Q ss_pred hhHHHHHHHHHhccc-----eEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 045478 240 QCWEEICHAVLEARH-----LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~ 314 (852)
+.|+.+++.|++|.+ +|.|+-|.+.. ..+|.++|+.||++||+|+||| +....
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~iv~aL~~Aa~~Gk~V~vlv-e~kar----- 405 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVDALIEAAENGKQVTVLV-ELKAR----- 405 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEecC----------------CHHHHHHHHHHHHcCCEEEEEE-ccCcc-----
Confidence 568899999999998 89999997642 2699999999999999999998 64321
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDG 394 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~ 394 (852)
+....+..+.+.|+++||+|.+- ++ .+..|.|+++||++. ++.-+..+++|+.|+..
T Consensus 406 -----fde~~n~~~~~~L~~aGv~V~y~--~~--------------~~k~HaK~~lid~~e-~~~~~~~~~iGTgN~n~- 462 (691)
T PRK05443 406 -----FDEEANIRWARRLEEAGVHVVYG--VV--------------GLKTHAKLALVVRRE-GGGLRRYVHLGTGNYNP- 462 (691)
T ss_pred -----ccHHHHHHHHHHHHHcCCEEEEc--cC--------------CccceeEEEEEEeec-CCceeEEEEEcCCCCCc-
Confidence 11111245677889999999642 11 136799999999863 22334489999999988
Q ss_pred ccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeC-hHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Q 045478 395 RYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEG-PAAYDILINFEQRWRRSTKWREFRLKKVTHWYD 473 (852)
Q Consensus 395 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~G-paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~ 473 (852)
++- ..|.|+.+.... ..+.|+...|...|.......
T Consensus 463 ~s~-------------------------------~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~------------ 499 (691)
T PRK05443 463 KTA-------------------------------RLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK------------ 499 (691)
T ss_pred chh-------------------------------hhccceeEEEeChHHHHHHHHHHHHHhCcCcccc------------
Confidence 321 357899998555 589999999998876421100
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHH
Q 045478 474 DSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVK 553 (852)
Q Consensus 474 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~ 553 (852)
.. .++-+ |.. ....+.+.+..
T Consensus 500 --------~~--------------------------~l~~s---------P~~----------------~~~~l~~~i~~ 520 (691)
T PRK05443 500 --------LR--------------------------KLLVS---------PFT----------------LRERLLELIDR 520 (691)
T ss_pred --------cc--------------------------EEeec---------Ccc----------------HHHHHHHHHHH
Confidence 00 00100 111 14678889999
Q ss_pred HHHhccc----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEe-------cCCCCCCCCc
Q 045478 554 AIRSAQH----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVI-------PMWPEGNPNS 622 (852)
Q Consensus 554 aI~~Ak~----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~Ivl-------P~~peg~~~~ 622 (852)
.|.+||+ +|+|.++||. + ..+..++..| +.+||+|.+++ |..| |.++.
T Consensus 521 ei~~Ak~G~~a~I~ik~n~l~-------d-----------~~ii~aL~~A--s~~GV~V~liVRGiC~l~pgip-g~sd~ 579 (691)
T PRK05443 521 EIANARAGKPARIIAKMNSLV-------D-----------PQIIDALYEA--SQAGVKIDLIVRGICCLRPGVP-GLSEN 579 (691)
T ss_pred HHHHHhcCCCCEEEEEcCCCC-------C-----------HHHHHHHHHH--HHCCCeEEEEEecccccCCCCC-CCCCC
Confidence 9999999 9999999964 2 1344444444 33779999999 2111 23333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEE
Q 045478 623 AAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYV 702 (852)
Q Consensus 623 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 702 (852)
..+ + ++...+.+ ++++
T Consensus 580 i~v--------~-------s~v~r~Le-h~rI------------------------------------------------ 595 (691)
T PRK05443 580 IRV--------R-------SIVGRFLE-HSRI------------------------------------------------ 595 (691)
T ss_pred EEE--------H-------HHHHHHHh-cCEE------------------------------------------------
Confidence 222 1 22455544 2332
Q ss_pred EeeEEEE---cceeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 703 HAKGMIV---DDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 703 HSKlmIV---DD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
++. ||.+++||||||+.|||. ++.|+++.|+|+..
T Consensus 596 ----y~f~~gd~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~ 633 (691)
T PRK05443 596 ----YYFGNGGDEEVYISSADWMPRNLD--RRVEVLFPILDPRL 633 (691)
T ss_pred ----EEEeCCCCcEEEEECCCCCccccc--ceEEEeEEEeCHHH
Confidence 222 899999999999999998 45999999999854
No 19
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.78 E-value=5.5e-18 Score=198.61 Aligned_cols=266 Identities=14% Similarity=0.192 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHhccc-----eEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 045478 240 QCWEEICHAVLEARH-----LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~ 314 (852)
+.|+.+++.|++|.+ +|.|+-|.+.. +.+|.++|.+||++|++|++|| +-.....
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfd--- 398 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSK----------------DSPIIDALIEAAENGKEVTVVV-ELKARFD--- 398 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEEecC----------------CcHHHHHHHHHHHcCCEEEEEE-Eehhhcc---
Confidence 568899999999998 89999997643 2699999999999999999998 7221000
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDG 394 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~ 394 (852)
...+-++.+.|+.+|++|..-- ..+..|+|+++||.+..| .-+..+++|.-|....
T Consensus 399 -------e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~n~~ 454 (672)
T TIGR03705 399 -------EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNYHPK 454 (672)
T ss_pred -------chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCCCCc
Confidence 0112356678999999998521 124789999999976222 2223677777665551
Q ss_pred ccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceee-eeChHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Q 045478 395 RYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCK-VEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYD 473 (852)
Q Consensus 395 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~-v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~ 473 (852)
. -..|.|+++. ..+..+.|+...|...|....... +
T Consensus 455 t--------------------------------a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~---~-------- 491 (672)
T TIGR03705 455 T--------------------------------ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK---F-------- 491 (672)
T ss_pred c--------------------------------cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh---h--------
Confidence 0 1368999998 888899999999998776321110 0
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHH
Q 045478 474 DSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVK 553 (852)
Q Consensus 474 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~ 553 (852)
. . +-+ + |.. .+..+.+.+.+
T Consensus 492 ---------~--------------------------~-l~~---~-----P~~----------------~~~~~~~~i~~ 511 (672)
T TIGR03705 492 ---------K--------------------------H-LLV---S-----PFT----------------LRKRLLELIDR 511 (672)
T ss_pred ---------H--------------------------H-HHh---C-----cch----------------HHHHHHHHHHH
Confidence 0 0 000 0 111 14568888999
Q ss_pred HHHhccc----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEe-------cCCCCCCCCc
Q 045478 554 AIRSAQH----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVI-------PMWPEGNPNS 622 (852)
Q Consensus 554 aI~~Ak~----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~Ivl-------P~~peg~~~~ 622 (852)
.|.+||+ +|+|.++||.. ..+..++..| +.+||+|++++ |..| |.++.
T Consensus 512 ei~~Ak~g~~~~I~ik~n~l~D------------------~~ii~aL~~A--s~aGV~V~LivRGiCcL~pgip-g~sd~ 570 (672)
T TIGR03705 512 EIENARAGKPARIIAKMNSLVD------------------PDLIDALYEA--SQAGVKIDLIVRGICCLRPGVP-GLSEN 570 (672)
T ss_pred HHHHHHcCCCCEEEEEcCCCCC------------------HHHHHHHHHH--HHCCCeEEEEEecccccCCCCC-CCCCC
Confidence 9999999 99999999642 1344444444 33779999999 1111 22222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEE
Q 045478 623 AAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYV 702 (852)
Q Consensus 623 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 702 (852)
..+. +++..+++
T Consensus 571 i~v~---------------siv~r~Le----------------------------------------------------- 582 (672)
T TIGR03705 571 IRVR---------------SIVGRFLE----------------------------------------------------- 582 (672)
T ss_pred EEEE---------------EEhhHhhC-----------------------------------------------------
Confidence 1110 11333333
Q ss_pred EeeEEEE---cceeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 703 HAKGMIV---DDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 703 HSKlmIV---DD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
|+|+++. ||.+++||||||+.|||. +..|+++.|+|+..
T Consensus 583 h~rIy~f~~~~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~ 624 (672)
T TIGR03705 583 HSRIYYFGNGGEEKVYISSADWMTRNLD--RRVEVLFPIEDPTL 624 (672)
T ss_pred cCEEEEEeCCCCcEEEEECCCCCCCccc--ceEEEEEEEcCHHH
Confidence 4444444 688999999999999998 55999999999853
No 20
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=1.6e-18 Score=164.53 Aligned_cols=117 Identities=23% Similarity=0.445 Sum_probs=102.5
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
++|+|++|++|++++..+. +||||+|.+++.+ .||+++.++.||+|||+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------~dpYv~v~l~~~~-~kT~v~~~t~nP~Wne~ 49 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------NDAYVIIQLGKEK-YSTSVKEKTTSPVWKEE 49 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------CCceEEEEECCee-eeeeeecCCCCCEeCce
Confidence 5799999999999887665 8999999998776 79999999999999999
Q ss_pred EEEeecC------CCceEEEEEEecCCCC-CceeeeEeeeceecc--CCCceeeeeeeccCCCCCCCCCCEEEEEEE
Q 045478 109 FCVPVAH------SVVNLEFHVKDNDILG-AELIGVVQIPVEKIL--CGNEVDDWFPIAGSYGKNLKPFPQLHVSMQ 176 (852)
Q Consensus 109 f~~~~~~------~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~--~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~ 176 (852)
|.|.+.. ....+.|+|+|++.++ +++||++.|++.++. .+...+.||+|....+++.+..|+|+|+|+
T Consensus 50 f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 50 CSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 9999876 3567899999999888 999999999999988 577788999997666655567899999875
No 21
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=4.7e-18 Score=160.11 Aligned_cols=119 Identities=22% Similarity=0.353 Sum_probs=107.8
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|++|++|+.++..+. +||||++.+++..++||+++.++.||.|||+
T Consensus 2 L~v~v~~a~~L~~~d~~g~------------------------------~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~ 51 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGT------------------------------SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEK 51 (121)
T ss_pred eEEEEEEeeCCCCcCCCCC------------------------------CCCeEEEEECCEEEEEeeeccCCCCCcccee
Confidence 7899999999999887765 8999999999877799999999999999999
Q ss_pred EEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 109 FCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 109 f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
|.|.+.+....+.|+|+|++..+ +++||.+.+++.++..+...+.|++|.+..+ .+..|+|+|.+.|+|
T Consensus 52 f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~~~~~~ 121 (121)
T cd04042 52 FTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEEEEECC
Confidence 99999877788999999999986 9999999999999998988999999976554 256899999999986
No 22
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.3e-17 Score=157.01 Aligned_cols=118 Identities=26% Similarity=0.433 Sum_probs=101.9
Q ss_pred EEEEEEEecCCCCCCC-cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 29 LDLSILEAKSLPNMDL-ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
|.|+|++|++|+.++. .+. +||||.|++++..++||+++.++.||.|||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~------------------------------sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE 51 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKM------------------------------RDCYCTVNLDQEEVFRTKTVEKSLCPFFGE 51 (121)
T ss_pred eEEEEEEccCCCCCCCCCCC------------------------------cCcEEEEEECCccEEEeeEEECCCCCccCC
Confidence 7899999999998753 232 899999999887779999999999999999
Q ss_pred EEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 108 HFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 108 ~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
+|.|.+.+....+.|.|+|++.++ +++||++.++++++..+...+.||+|. +.+...+..|+|+|+++|
T Consensus 52 ~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~-~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 52 DFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQ-PVDADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEE-ccCCCCcccEEEEEEEEC
Confidence 999999876678899999999887 899999999999999888889999994 333333568999999875
No 23
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2.4e-17 Score=156.40 Aligned_cols=120 Identities=24% Similarity=0.450 Sum_probs=101.9
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
+..|+|+|++|++|+..+ . +||||+|.+++..++||++. ++.||.|
T Consensus 3 ~~~L~V~Vi~A~~L~~~~---~------------------------------~DPYv~v~l~~~~~~kT~v~-~~~nP~W 48 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH---V------------------------------PHPYCVISLNEVKVARTKVR-EGPNPVW 48 (126)
T ss_pred eeEEEEEEEEeeCCCCCC---C------------------------------CCeeEEEEECCEeEEEeecC-CCCCCcc
Confidence 457999999999998642 2 89999999998877899985 5899999
Q ss_pred eeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 106 DEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 106 nE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
||+|.|.+..+. ..++|.|+|.+..+ +++||.+.||+.++..|...+.||+|....+.+.+..|+|+|+++|.+
T Consensus 49 nE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 49 SEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 999999865543 56789999998887 999999999999999999899999996554334466799999999986
No 24
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.5e-17 Score=162.03 Aligned_cols=122 Identities=23% Similarity=0.300 Sum_probs=105.6
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecC-CCCCeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISN-CENPFWD 106 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~-s~nP~Wn 106 (852)
.|.|+|++|++|++++.++. +||||+|.+++.. .||+++.+ +.||.||
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~------------------------------sDPYV~v~l~~~~-~kTk~~~~~t~nP~WN 49 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRV------------------------------PEVFVKAQLGNQV-LRTRPSQTRNGNPSWN 49 (150)
T ss_pred CEEEEEEEeECCCCCCCCCC------------------------------CCeEEEEEECCEE-eeeEeccCCCCCCccc
Confidence 38999999999999998776 9999999999865 79999977 6999999
Q ss_pred eEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCC----CceeeeeeeccCCC-----CCCCCCCEEEEEE
Q 045478 107 EHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCG----NEVDDWFPIAGSYG-----KNLKPFPQLHVSM 175 (852)
Q Consensus 107 E~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g----~~~~~w~~L~~~~g-----~~~k~~g~l~l~l 175 (852)
|+|.|.+.++. ..+.|+|+|.+..+ +++||++.||+.++..+ ...+.||+|.+..+ ++.+..|+|+|++
T Consensus 50 E~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i 129 (150)
T cd04019 50 EELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRL 129 (150)
T ss_pred CcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEE
Confidence 99999997654 57899999998876 99999999999998753 45789999987755 5667889999999
Q ss_pred Eeeec
Q 045478 176 QYKPI 180 (852)
Q Consensus 176 ~f~~~ 180 (852)
.|.+.
T Consensus 130 ~~~~~ 134 (150)
T cd04019 130 CLDGG 134 (150)
T ss_pred EecCc
Confidence 99954
No 25
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.73 E-value=1.7e-17 Score=155.58 Aligned_cols=116 Identities=25% Similarity=0.477 Sum_probs=101.1
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecC-CCCCee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISN-CENPFW 105 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~-s~nP~W 105 (852)
|+|+|+|++|++|++.+.++. +||||+|++++.. .||+++.+ +.||.|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~~~-~kT~~~~~~~~nP~W 49 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------QDPYCVLRIGGVT-KKTKTDFRGGQHPEW 49 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------CCceEEEEECCCc-cccccccCCCCCCcc
Confidence 789999999999999887766 8999999998755 89998865 789999
Q ss_pred eeEEEEeecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 106 DEHFCVPVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 106 nE~f~~~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
||+|.|.+.++ ...+.|+|+|++..++++||++.+++.++..+...+.|++|.. .+ +..|+|+|+|+|
T Consensus 50 ne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~---~~~G~i~l~l~f 118 (118)
T cd08681 50 DEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KG---RYAGEVYLELTF 118 (118)
T ss_pred CceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CC---cEeeEEEEEEEC
Confidence 99999999874 4678999999988789999999999999987777899999953 33 467999999987
No 26
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=3.5e-17 Score=155.57 Aligned_cols=120 Identities=20% Similarity=0.297 Sum_probs=102.8
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|.|+|++|++|++.+..+. +||||+|.+++.+ .||+++.++.||.|||
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------~dpyv~v~~~~~~-~rT~v~~~t~nP~Wne 49 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------SSAYVELDFDGQK-KRTRTKPKDLNPVWNE 49 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------cCcEEEEEECCEE-ecceeEcCCCCCccce
Confidence 48999999999998887665 8999999999876 7999999999999999
Q ss_pred EEEEeecCCC----ceEEEEEEecCCC--CCceeeeEeeeceecc-CCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 108 HFCVPVAHSV----VNLEFHVKDNDIL--GAELIGVVQIPVEKIL-CGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 108 ~f~~~~~~~~----~~l~~~V~d~d~~--~~~~iG~~~i~l~~l~-~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
.|.|.+.++. ..+.|+|+|.+.+ ++++||++.|++.++. .+.....||+|.. .+...+..|+|+|+++|++
T Consensus 50 ~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~-~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 50 KLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEK-RGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred EEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeee-CCCCCCccEEEEEEEEEcC
Confidence 9999998643 4689999998877 4899999999999998 5777889999954 3433357899999999874
No 27
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.71 E-value=1.2e-16 Score=151.73 Aligned_cols=122 Identities=23% Similarity=0.381 Sum_probs=104.6
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-eeEEEeeeecCCCCCeeee
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-ATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-~~~~rT~vi~~s~nP~WnE 107 (852)
|.|+|++|++|+. ..+. +||||+++++. ....||+++.++.||.|||
T Consensus 1 l~v~v~~A~~L~~--~~g~------------------------------~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne 48 (126)
T cd08678 1 LLVKNIKANGLSE--AAGS------------------------------SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDE 48 (126)
T ss_pred CEEEEEEecCCCC--CCCC------------------------------cCCEEEEEECCCCcEEEeEEEecCCCCccCc
Confidence 6799999999986 3343 89999999974 3448999999999999999
Q ss_pred EEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeecCC
Q 045478 108 HFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQ 182 (852)
Q Consensus 108 ~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~~ 182 (852)
.|.|.+......+.|+|+|.+..+ +++||++.+++.++..+...+.|++|....+...+..|+|+++++|.+.++
T Consensus 49 ~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 49 HFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred eEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 999999766778999999999887 999999999999999888888999996544433467899999999998664
No 28
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.71 E-value=1.2e-16 Score=149.88 Aligned_cols=118 Identities=26% Similarity=0.419 Sum_probs=102.8
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|+|+|+|++|++|++++.++. +||||+|.+.+.. +||+++.++.||.||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------~dPyv~v~~~~~~-~~T~~~~~t~nP~W~ 49 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------SDPFCVLELVNAR-LQTHTIYKTLNPEWN 49 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------CCcEEEEEECCEe-eecceecCCcCCccC
Confidence 789999999999999887665 8999999998776 799999999999999
Q ss_pred eEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
|+|.|++.+....+.|+|+|++..+ +++||++.+++.++..|. ..|++|..+.++ .+..|+|.++|+|.
T Consensus 50 e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~-~~~~G~i~l~~~~~ 119 (119)
T cd08377 50 KIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLR-TRAKGSILLEMDVI 119 (119)
T ss_pred cEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCC-CceeeEEEEEEEeC
Confidence 9999999876778899999998876 899999999999998664 579999655433 35789999999873
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=7.9e-17 Score=151.60 Aligned_cols=113 Identities=21% Similarity=0.365 Sum_probs=97.8
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|++|++|+.+ . +||||+|.+++.. +||++++++.||+|||+
T Consensus 2 L~V~Vi~a~~L~~~----~------------------------------~Dpyv~v~l~~~~-~kT~v~~~t~nP~Wne~ 46 (121)
T cd08378 2 LYVRVVKARGLPAN----S------------------------------NDPVVEVKLGNYK-GSTKAIERTSNPEWNQV 46 (121)
T ss_pred EEEEEEEecCCCcc----c------------------------------CCCEEEEEECCcc-ccccccCCCCCCccceE
Confidence 89999999999875 3 8999999998754 89999999999999999
Q ss_pred EEEeecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCC-----ceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 109 FCVPVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGN-----EVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 109 f~~~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~-----~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
|.|.+.+. ...+.|+|+|++..++++||++.+++.++..+. ..+.||+|....+ .+..|+|+|+++|-
T Consensus 47 F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~G~i~l~~~~~ 120 (121)
T cd08378 47 FAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVGGELMLAVWFG 120 (121)
T ss_pred EEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--CccceEEEEEEEec
Confidence 99998874 567899999999888999999999999987532 3568999976554 36789999999984
No 30
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.5e-16 Score=150.31 Aligned_cols=121 Identities=27% Similarity=0.435 Sum_probs=101.8
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-eeEEEeeeecCCCCCee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-ATVAQTRVISNCENPFW 105 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-~~~~rT~vi~~s~nP~W 105 (852)
|.|+|+|++|++|++.+..++ .+||||++++++ ..++||+++.++.||.|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------~~dpyv~v~~~~~~~~~kT~~~~~~~~P~W 52 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------TVDPYVTFSISNRRELARTKVKKDTSNPVW 52 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------CCCCeEEEEECCCCcceEeeeecCCCCCcc
Confidence 789999999999997654322 179999999998 56699999999999999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
||.|.|.+......+.|+|+|.+..+ +++||.+.+++.++..+...+.|...+...+ +..|+|+++++|.|
T Consensus 53 ne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~---k~~G~i~~~l~~~p 124 (124)
T cd04044 53 NETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNG---KPVGELNYDLRFFP 124 (124)
T ss_pred eEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCC---ccceEEEEEEEeCC
Confidence 99999999866788999999998886 8999999999999997766654443334445 46799999999987
No 31
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=3.6e-16 Score=149.63 Aligned_cols=125 Identities=26% Similarity=0.467 Sum_probs=102.6
Q ss_pred eeeEEEEEEEEecCCCCCCCcchh-hhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITES-MRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENP 103 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP 103 (852)
+.|.|+|+|++|++|++.+..+.. .+++ ....+||||++.+++..+.+|+++.++.||
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~---------------------~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P 60 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKK---------------------GSQLLDPYVSIDVDDTHIGKTSTKPKTNSP 60 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhccccc---------------------CccCcCcEEEEEECCEEEeEEeEcCCCCCC
Confidence 579999999999999988753210 0000 001289999999999888999999999999
Q ss_pred eeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccC--CCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 104 FWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILC--GNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 104 ~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~--g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
.|||+|.|++. ....+.|.|+|++.++ +++||++.+++.++.. +...+.|++|. +.|+|+++++|..
T Consensus 61 ~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 61 VWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred CcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 99999999996 5578899999988877 8999999999999987 57789999993 4589999999875
No 32
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.69 E-value=3.3e-16 Score=147.51 Aligned_cols=117 Identities=26% Similarity=0.491 Sum_probs=100.3
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|++|++|++++..+. +||||+|.+++..++||+++.++.||.|||.
T Consensus 2 l~v~vi~a~~L~~~d~~g~------------------------------~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~ 51 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS------------------------------SDPYCIVKVDNEVIIRTATVWKTLNPFWGEE 51 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC------------------------------CCceEEEEECCEeeeeeeeEcCCCCCcccce
Confidence 8999999999999988776 8999999999887799999999999999999
Q ss_pred EEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCC-CceeeeeeeccCCCCCCCCCCEEEEEEE
Q 045478 109 FCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG-NEVDDWFPIAGSYGKNLKPFPQLHVSMQ 176 (852)
Q Consensus 109 f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g-~~~~~w~~L~~~~g~~~k~~g~l~l~l~ 176 (852)
|.|++.+....+.|+|+|++.++ +++||++.++++++..+ ...+.|++|...... .+..|+|++.++
T Consensus 52 f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~l~~~ 120 (121)
T cd04054 52 YTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIHLELS 120 (121)
T ss_pred EEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEEEEEE
Confidence 99999877778899999999988 89999999999988754 347899999542221 235689988764
No 33
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.67 E-value=7.5e-16 Score=143.91 Aligned_cols=113 Identities=25% Similarity=0.301 Sum_probs=99.8
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|+|+|++|++|+.++..+. +||||++++++.. .||+++.++.||.|||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~------------------------------~dPyv~v~~~~~~-~kT~v~~~t~nP~Wne 49 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGL------------------------------SDPYVKFRLGNEK-YKSKVCSKTLNPQWLE 49 (116)
T ss_pred CEEEEEEEEECCCCCCCCCC------------------------------CCcEEEEEECCEe-EecccccCCCCCceeE
Confidence 37899999999999887665 8999999998765 8999999999999999
Q ss_pred EEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 108 HFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 108 ~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
+|.|.+... ...+.|+|+|.+..+ +++||++.+++.++..+...+.|++|.. ..|+|++.+.|+
T Consensus 50 ~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 50 QFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred EEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 999998775 567899999999887 9999999999999998888999999942 248999988875
No 34
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.67 E-value=5.4e-16 Score=147.42 Aligned_cols=120 Identities=23% Similarity=0.442 Sum_probs=101.3
Q ss_pred eEEEEEEEEecCCCCCCC--cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 27 GDLDLSILEAKSLPNMDL--ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
|.|.|+|++|++|++.+. .+. +||||.|.+++.. .||+++.++.||.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------~dPyv~v~~~~~~-~kT~~~~~t~~P~ 49 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------SDPYAILSVGAQR-FKTQTIPNTLNPK 49 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------cCCeEEEEECCEE-EecceecCCcCCc
Confidence 789999999999998876 555 8999999997765 8999999999999
Q ss_pred eeeEEEEeecC-CCceEEEEEEecCCCC-CceeeeEeeeceeccC---CCceeeeeeeccCC-CCCCCCCCEEEEEEEe
Q 045478 105 WDEHFCVPVAH-SVVNLEFHVKDNDILG-AELIGVVQIPVEKILC---GNEVDDWFPIAGSY-GKNLKPFPQLHVSMQY 177 (852)
Q Consensus 105 WnE~f~~~~~~-~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L~~~~-g~~~k~~g~l~l~l~f 177 (852)
|||+|.|++.. ....+.|+|+|++..+ +++||++.|++.++.. ....+.|++|.+.. ++..+..|+|+|++.|
T Consensus 50 Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 50 WNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999987 4678899999999886 8999999999999873 34467999996552 2234568999998864
No 35
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.67 E-value=5.5e-16 Score=145.80 Aligned_cols=120 Identities=24% Similarity=0.423 Sum_probs=99.0
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|++++.... ..+ ...+||||+|++++. ++||+++.++.||.||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~---~~~---------------------~g~~dPyv~v~~~~~-~~kT~~~~~t~~P~W~ 55 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVG---GLV---------------------KGKSDPYVIVRVGAQ-TFKSKVIKENLNPKWN 55 (121)
T ss_pred CeEEEEEEEccCCcccccccc---cCC---------------------CCCcCCEEEEEECCE-eEEccccCCCCCCccc
Confidence 789999999999998875310 000 001899999999884 5999999999999999
Q ss_pred eEEEEeecC-CCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 107 EHFCVPVAH-SVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 107 E~f~~~~~~-~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|+|.|.+.. ....+.|+|+|++..++++||.+.+++.++..+...+.||+|.+. ..|+|+++++|
T Consensus 56 e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 56 EVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred ceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 999999875 456789999999887889999999999999987778999999432 45899998876
No 36
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=5.8e-16 Score=148.32 Aligned_cols=120 Identities=24% Similarity=0.393 Sum_probs=101.4
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe------eEEEeeeecCCC
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA------TVAQTRVISNCE 101 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~------~~~rT~vi~~s~ 101 (852)
+|+|+|++|++|+.++..+. +||||+|++.+. ...+|+++.++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~ 50 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------SDPYVKISLYDPDGNGEIDSVQTKTIKKTL 50 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------cCcEEEEEEECCCCCCcccceeeeEEcCCC
Confidence 48999999999999887665 899999999754 247999999999
Q ss_pred CCeeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCc------eeeeeeeccCCCCCCCCCCEEEEE
Q 045478 102 NPFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE------VDDWFPIAGSYGKNLKPFPQLHVS 174 (852)
Q Consensus 102 nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~------~~~w~~L~~~~g~~~k~~g~l~l~ 174 (852)
||.|||+|.|.+......+.|+|+|++..+ +++||++.+++.++..+.. .+.||+|... ....+..|+|+++
T Consensus 51 nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~~G~l~~~ 129 (133)
T cd04033 51 NPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-SSKSRVKGHLRLY 129 (133)
T ss_pred CCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-CCCCcceeEEEEE
Confidence 999999999998776677899999999987 8999999999999986543 4589999643 2233678999999
Q ss_pred EEee
Q 045478 175 MQYK 178 (852)
Q Consensus 175 l~f~ 178 (852)
++|.
T Consensus 130 ~~~~ 133 (133)
T cd04033 130 MAYL 133 (133)
T ss_pred EeeC
Confidence 9983
No 37
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.66 E-value=8.2e-16 Score=145.26 Aligned_cols=117 Identities=23% Similarity=0.395 Sum_probs=99.3
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|+|+|++|++|+.++..+. +||||+|++++.. .+|+++.++.||.|||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------~DPyv~v~~~~~~-~kT~v~~~t~nP~Wne 49 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------SDPFVRVFYNGQT-LETSVVKKSCYPRWNE 49 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------cCceEEEEECCEE-EeceeecCCCCCccCc
Confidence 48999999999998887665 8999999998766 7999999999999999
Q ss_pred EEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCC---CCCCCCEEEEEE
Q 045478 108 HFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGK---NLKPFPQLHVSM 175 (852)
Q Consensus 108 ~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~---~~k~~g~l~l~l 175 (852)
+|.|.+.+. ...+.|+|+|++..+ +++||.+.+++.++..+...+.|+.|.....+ ..+..|.|+|.|
T Consensus 50 ~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 50 VFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999998875 467899999999888 89999999999999877778999999653322 235567888876
No 38
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.65 E-value=4.6e-16 Score=148.70 Aligned_cols=99 Identities=28% Similarity=0.485 Sum_probs=91.5
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENP 103 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP 103 (852)
.+.|.|+|+|.+|.+|...|..++ |||||++.+++.+ .||+++.++.||
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~s------------------------------SDPyVVl~lg~q~-lkT~~v~~n~NP 51 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGS------------------------------SDPYVVLELGNQK-LKTRVVYKNLNP 51 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccC------------------------------CCCeEEEEECCee-eeeeeecCCCCC
Confidence 468999999999999998887565 9999999999999 899999999999
Q ss_pred eeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceee
Q 045478 104 FWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDD 153 (852)
Q Consensus 104 ~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~ 153 (852)
+|||.|+|.+.++...+.++|+|+|.++ |++||.|.||+..+........
T Consensus 52 eWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 52 EWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred cccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhhhc
Confidence 9999999999999999999999999999 9999999999999997665544
No 39
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.64 E-value=3.2e-14 Score=153.07 Aligned_cols=337 Identities=15% Similarity=0.179 Sum_probs=187.4
Q ss_pred hHHHHHHHHHhccceEEEEEe--ecc-cceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccc
Q 045478 241 CWEEICHAVLEARHLIYIIGW--SVF-HPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKT 317 (852)
Q Consensus 241 ~~~~l~~aI~~Ak~~I~I~~w--~~~-~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~ 317 (852)
.+++.++.|.+|+++++|..| .+. .++++. +. ....|..+...|.+++.+||.|||.. ....... +
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~-ds----St~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~-~---- 141 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVV-DS----STQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP-P---- 141 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccC-CC----cchHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC-C----
Confidence 457889999999999999854 332 112111 11 01236789999999999999999997 4331111 1
Q ss_pred cccccCCcHHHHhhhcCCC-CEEEec--CCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCC
Q 045478 318 EGVMQTHDEETRKFFKHSS-VNCVLA--PRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDG 394 (852)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~g-v~v~~~--~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~ 394 (852)
......|...| ++++-- ++++. -.-.|-|++|||++ .-|+||.|+.+
T Consensus 142 --------~~d~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDW- 191 (456)
T KOG3603|consen 142 --------NADLQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDW- 191 (456)
T ss_pred --------cccHHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccch-
Confidence 12234455566 665522 11211 13569999999998 99999999999
Q ss_pred ccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeC--hHHHHHHHHHHHHHhhhhhhhhhhhccccccc
Q 045478 395 RYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEG--PAAYDILINFEQRWRRSTKWREFRLKKVTHWY 472 (852)
Q Consensus 395 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~G--paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~ 472 (852)
|-.|+- ..+++.++. ..+.||.+.|+++|........ ++ +.|+
T Consensus 192 rSlTqv-------------------------------kElGv~v~NCpclakDL~kiFe~yW~lg~~~s~--~p--~~wp 236 (456)
T KOG3603|consen 192 RSLTQV-------------------------------KELGVVVRNCPCLAKDLKKIFERYWYLGNAKSL--IP--KKWP 236 (456)
T ss_pred hhccce-------------------------------eEeeeEEecChhHHHHHHHHHHHHhcCCCCCcc--CC--CCCc
Confidence 644421 234555544 4799999999999997544320 00 1121
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHH
Q 045478 473 DDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYV 552 (852)
Q Consensus 473 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl 552 (852)
...-. ++.. ..|.. . .-+......++..|- ..|. .+|+.. =.+|++
T Consensus 237 ~~~st-----~~N~-~~p~~-----~--~~dg~~~~~y~saSP-----~~~~-----------~~grt~-----DL~ail 282 (456)
T KOG3603|consen 237 NCYST-----HYNK-PLPMK-----I--AVDGTPATPYISASP-----PPLN-----------PSGRTW-----DLEAIL 282 (456)
T ss_pred ccccc-----cccc-cCcce-----e--ecCCCCcceEEccCC-----CCCC-----------CCCCch-----hHHHHH
Confidence 11000 0000 00110 0 001112233333221 1111 123221 145999
Q ss_pred HHHHhccceEEEe-ecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHH
Q 045478 553 KAIRSAQHFIYIE-NQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYW 631 (852)
Q Consensus 553 ~aI~~Ak~~IyIE-nqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~ 631 (852)
+.|..|++||||. .+||=+..+.-| .+--....|+|.|+- |||+|++++..|++..+.- ..++
T Consensus 283 ~~i~~A~~fv~isVMdY~Ps~~y~k~-------~~fw~iDdaiR~aa~----RgV~vR~lvs~~~~~~~~m---~~~L-- 346 (456)
T KOG3603|consen 283 NTIDEAQKFVYISVMDYFPSTIYSKN-------HRFWEIDDAIRRAAV----RGVKVRLLVSCWKHSEPSM---FRFL-- 346 (456)
T ss_pred HHHHHHhhheeeeehhccchheeecC-------cchhhhhHHHHHHhh----cceEEEEEEeccCCCCchH---HHHH--
Confidence 9999999999997 456643322101 111122334444433 8899999999987644321 1111
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcc
Q 045478 632 QGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDD 711 (852)
Q Consensus 632 ~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD 711 (852)
+++ +.|...+....|+ ++||-.........+|. -..|+|.||-++
T Consensus 347 --~SL----q~l~~~~~~~~iq--------vk~f~VP~~~~~~ip~~---------------------Rv~HnKymVTe~ 391 (456)
T KOG3603|consen 347 --RSL----QDLSDPLENGSIQ--------VKFFIVPQTNIEKIPFA---------------------RVNHNKYMVTES 391 (456)
T ss_pred --HHH----HHhcCccccCceE--------EEEEEeCCCccccCchh---------------------hhccceeEEeec
Confidence 111 0111122111222 56776543322111222 278999999988
Q ss_pred eeEEecCcCcccCCCCCCCCceeEEEEecC
Q 045478 712 EYVIMGSANINQRSLEGSRDTEIAMGAYQP 741 (852)
Q Consensus 712 ~~~iIGSANln~RSm~~n~DsEi~v~i~d~ 741 (852)
.++||++||-.-=|..+ .-++++|.++
T Consensus 392 -aayIGTSNws~dYf~~T--aG~~ivv~q~ 418 (456)
T KOG3603|consen 392 -AAYIGTSNWSGDYFTST--AGTAIVVRQT 418 (456)
T ss_pred -ceeeeccCCCccceecc--CceEEEEecC
Confidence 79999999987777655 6788888665
No 40
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.64 E-value=4.2e-15 Score=141.02 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=103.3
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
+..|+|+|++|++|++.+.++. +||||++.+++.. .||+++.++.||+|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------~dPyv~v~~~~~~-~kT~v~~~t~nP~W 50 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------ADPYVIIKCEGES-VRSPVQKDTLSPEF 50 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------cCccEEEEECCEE-EEeCccCCCCCCcc
Confidence 5789999999999999887776 8999999998876 79999999999999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCC-CCCCCCCEEEEEEEeeec
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYG-KNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g-~~~k~~g~l~l~l~f~~~ 180 (852)
||.|.|.+......+.|+|||++.+++++||.+.+++..+. .....|++|..... ...+..|.|.+++.+.+.
T Consensus 51 ne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 51 DTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred cceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 99999998888888999999999888999999999998764 33457888853221 234678999999987763
No 41
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.64 E-value=1.7e-15 Score=142.24 Aligned_cols=113 Identities=27% Similarity=0.431 Sum_probs=96.1
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCCCeee
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCENPFWD 106 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~nP~Wn 106 (852)
|.|+|++|++|++.+..+. +||||++.+.+ ....||+++.++.||.||
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wn 51 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------PDCYVELWLPTASDEKKRTKTIKNSINPVWN 51 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------CCcEEEEEEcCCCCccCccceecCCCCCccc
Confidence 7899999999998876665 89999999964 345899999999999999
Q ss_pred eEEEEeecCCC-ceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 107 EHFCVPVAHSV-VNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 107 E~f~~~~~~~~-~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|+|.|.+.... ..+.|+|+|.+.+++++||++.+++.++..|...+.|++|. ++ +.|+|++++.+
T Consensus 52 e~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~-~~-----~~g~l~~~~~~ 117 (119)
T cd04036 52 ETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLN-PQ-----GKEELEVEFLL 117 (119)
T ss_pred eEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECC-CC-----CCceEEEEEEe
Confidence 99999987653 45799999998888899999999999999999999999993 22 35777776654
No 42
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.63 E-value=3.1e-15 Score=143.59 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=96.9
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|++++.++. +||||++.+++.. .||+++.++.||.||
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~------------------------------~DPYv~v~~~~~~-~kT~vi~~t~nP~Wn 63 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK------------------------------SDPYCEVSMGSQE-HKTKVVSDTLNPKWN 63 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC------------------------------cCcEEEEEECCEe-eeccccCCCCCCccC
Confidence 899999999999999887665 8999999998766 899999999999999
Q ss_pred eEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccC-----CCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 107 EHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILC-----GNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 107 E~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~-----g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|+|.|.+.+.. ..+.|+|||++.++ +++||++.+++.++.. ......|+.+ .+ +..|+|+|++.|
T Consensus 64 e~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~---~~~g~i~l~~~~ 135 (136)
T cd08375 64 SSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HE---VPTGEVVVKLDL 135 (136)
T ss_pred ceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---cc---ccceeEEEEEEe
Confidence 99999997644 56899999999887 8999999999999885 2334566666 22 456899998876
No 43
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.63 E-value=8.8e-16 Score=143.93 Aligned_cols=102 Identities=25% Similarity=0.415 Sum_probs=88.3
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
-+|.|.|+|++|++|++++ .+. +||||+|++.. ....||+++.++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~------------------------------~dpYVkv~l~p~~~~~~~~kT~v~~~t 58 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGT------------------------------CNSYVKISLSPDKEVRFRQKTSTVPDS 58 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCC------------------------------CCeeEEEEEEeCCCCcceEeCccccCC
Confidence 4789999999999999887 554 89999999964 235799999999
Q ss_pred CCCeeeeEEEEeecCCC--ceEEEEEEecCCCC--CceeeeEeeeceeccCCCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAHSV--VNLEFHVKDNDILG--AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~--~~l~~~V~d~d~~~--~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
.||.|||+|.|.+.+.. ..+.|+|||.+..+ +++||.+.||+.++..|+.+++||.|
T Consensus 59 ~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 59 ANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 99999999999987632 45789999988764 68999999999999988889999976
No 44
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.63 E-value=1.9e-15 Score=141.14 Aligned_cols=100 Identities=22% Similarity=0.343 Sum_probs=85.9
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC------eeEEEeeeecCCC
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG------ATVAQTRVISNCE 101 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~------~~~~rT~vi~~s~ 101 (852)
.|+|+|++|++|+.++. +. +||||+|++-+ ....||+++.++.
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------~DPYVkV~l~g~~~~~k~~k~kTkv~~~tl 49 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------FRPFVEVNLIGPHLSDKKRKFATKSKNNNW 49 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------CCCEEEEEEecCCCcccccEeeeEEecCCC
Confidence 48999999999998763 54 89999999832 2347999999999
Q ss_pred CCeeeeEEEEeecCC----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 102 NPFWDEHFCVPVAHS----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 102 nP~WnE~f~~~~~~~----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
||+|||+|.|.+... ...|.|+|+|++..+ +++||++.||+.++..++..+.|++|.
T Consensus 50 nPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 50 SPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred CCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 999999999998743 245799999998877 899999999999999988899999993
No 45
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=4e-15 Score=141.41 Aligned_cols=103 Identities=27% Similarity=0.460 Sum_probs=91.5
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceee
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDD 153 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~ 153 (852)
+||||+|.+.+.. .||+++.++.||+|||+|.|++.+. ...+.|+|+|.+..+ +++||++.+++.++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 8999999998776 7999999999999999999999764 567899999999887 8999999999999998888899
Q ss_pred eeeeccCCCCCCCCCCEEEEEEEeeecCCc
Q 045478 154 WFPIAGSYGKNLKPFPQLHVSMQYKPIGQI 183 (852)
Q Consensus 154 w~~L~~~~g~~~k~~g~l~l~l~f~~~~~~ 183 (852)
|++|.+..+++ ..++|+++++|.|...+
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99998766654 36899999999998654
No 46
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.63 E-value=1.3e-15 Score=140.84 Aligned_cols=100 Identities=30% Similarity=0.535 Sum_probs=88.1
Q ss_pred EEEEEEEecCCCCCCC-cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee-e
Q 045478 29 LDLSILEAKSLPNMDL-ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW-D 106 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W-n 106 (852)
|.|+|++|++|++++. .+. +||||+|.+++ ..+||+++.++.||.| |
T Consensus 1 l~V~v~~a~~L~~~d~~~~~------------------------------~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~n 49 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL------------------------------TDAFVEVKFGS-TTYKTDVVKKSLNPVWNS 49 (110)
T ss_pred CEEEEEEEECCCccccCCCC------------------------------CCceEEEEECC-eeEecceecCCCCCcccC
Confidence 6899999999998874 344 89999999988 4589999999999999 9
Q ss_pred eEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccC---CCceeeeeeecc
Q 045478 107 EHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILC---GNEVDDWFPIAG 159 (852)
Q Consensus 107 E~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L~~ 159 (852)
|+|.|.+.+. ...+.|+|+|.+.++ +++||++.+++.++.. +..+++||+|++
T Consensus 50 e~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 50 EWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred cEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999874 367899999999987 8999999999999986 456899999975
No 47
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.62 E-value=1.8e-15 Score=142.65 Aligned_cols=101 Identities=30% Similarity=0.512 Sum_probs=88.9
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
.|+|.|+|++|++|+.++ .+. +||||+|++.. ....||+++.++.
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~------------------------------~DpyVkv~l~~~~~~~~~~kT~v~~~~~ 60 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSD------------------------------PDPYVKTYLLPDPQKTTKRKTKVVRKTR 60 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCC------------------------------CCCEEEEEEeeCCccCCceeCCccCCCC
Confidence 689999999999999988 555 89999999963 2347999999999
Q ss_pred CCeeeeEEEEee-cC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 102 NPFWDEHFCVPV-AH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 102 nP~WnE~f~~~~-~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
||.|||+|.|++ .. ....+.|+|||++..+ +++||++.|++.++..++..+.||+|
T Consensus 61 nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 61 NPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 999999999987 32 3467899999999888 99999999999999988888999987
No 48
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=4.7e-15 Score=139.35 Aligned_cols=104 Identities=31% Similarity=0.477 Sum_probs=94.6
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|+|+|++|++|++.+.++. +||||+|.+++..+++|+++.++.||.||
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------~DPYv~v~~~~~~~~kT~~~~~t~~P~Wn 50 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------IDPYVRVLVNGIVKGRTVTISNTLNPVWD 50 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------cCCEEEEEECCEEeeceeEECCCcCCccC
Confidence 789999999999999887665 89999999988777999999999999999
Q ss_pred eEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCC
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSY 161 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 161 (852)
|.|.|++.+....+.|+|+|.+..+ +++||.+.+++.++..+ ..++||.|++..
T Consensus 51 e~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 51 EVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred ceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999888788999999999988 88999999999999876 678999998654
No 49
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.61 E-value=4e-15 Score=136.48 Aligned_cols=97 Identities=29% Similarity=0.522 Sum_probs=85.7
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|++|++|++.+..+. +||||+|.+++.. .||+++.++.||+|||.
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne~ 50 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------PSPYVELTVGKTT-QKSKVKERTNNPVWEEG 50 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------CCcEEEEEECCEE-EeCccccCCCCCcccce
Confidence 7899999999998876554 8999999999854 89999999999999999
Q ss_pred EEEeecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCC--ceeeeeeec
Q 045478 109 FCVPVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGN--EVDDWFPIA 158 (852)
Q Consensus 109 f~~~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~--~~~~w~~L~ 158 (852)
|.|.+.++ ...+.|+|+|.+. +++||++.|++.++..+. ..+.||+|.
T Consensus 51 f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 51 FTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred EEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 99999875 5678999999876 889999999999998643 578999994
No 50
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.61 E-value=6e-15 Score=137.38 Aligned_cols=97 Identities=22% Similarity=0.394 Sum_probs=86.1
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|+.++ . .||||.|.+++.+ .+|+++.++ ||.||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~------------------------------~dPYV~Ik~g~~k-~kT~v~~~~-nP~Wn 46 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---K------------------------------FNTYVTLKVQNVK-STTIAVRGS-QPCWE 46 (127)
T ss_pred ceEEEEEEEeeCCCCCC---C------------------------------CCCeEEEEECCEE-eEeeECCCC-CCcee
Confidence 57999999999997654 2 6899999998876 899999884 99999
Q ss_pred eEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCce--eeeeeec
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEV--DDWFPIA 158 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~--~~w~~L~ 158 (852)
|.|.|.+......++|+|||++.++|++||++.|||.++..+... ..||+|.
T Consensus 47 E~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 47 QDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999999988888899999999988899999999999999976655 7899995
No 51
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.61 E-value=2.8e-15 Score=142.04 Aligned_cols=113 Identities=25% Similarity=0.380 Sum_probs=96.8
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeec-CCCCCeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVIS-NCENPFWD 106 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~-~s~nP~Wn 106 (852)
+|+|+|++|++|++.+.++. +||||+|++++....+|+++. ++.||.||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wn 50 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------MKVYAVVWIDPSHKQSTPVDRDGGTNPTWN 50 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------CceEEEEEECCCcccccccccCCCCCCCCC
Confidence 58999999999998876665 899999999884448999985 58999999
Q ss_pred eEEEEeecCC-----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCce-----eeeeeeccCCCCCCCCCCEEEE
Q 045478 107 EHFCVPVAHS-----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEV-----DDWFPIAGSYGKNLKPFPQLHV 173 (852)
Q Consensus 107 E~f~~~~~~~-----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~-----~~w~~L~~~~g~~~k~~g~l~l 173 (852)
|.|.|.+.+. ...+.|+|+|++.++ +++||.+.|++.++..+... ..||+|..+.| ++.|.|+|
T Consensus 51 e~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g---~~~G~~~~ 125 (125)
T cd04051 51 ETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG---KPQGVLNF 125 (125)
T ss_pred CEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC---CcCeEEeC
Confidence 9999999877 578899999998866 89999999999999976553 68999987776 56788874
No 52
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.61 E-value=5.2e-15 Score=142.76 Aligned_cols=106 Identities=21% Similarity=0.365 Sum_probs=90.0
Q ss_pred eeeEEEEEEEEecCCCCCC-CcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPNMD-LITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~ 99 (852)
-.|.|.|+|++|++|+.++ ..+. +||||++++.. . ...||+++++
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------sDPYVKv~Llp~~~~~~k~KT~v~kk 76 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVL------------------------------PAPYVKVYLLEGKKCIAKKKTKIARK 76 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCC------------------------------cCCeEEEEEECCCccccceeceecCC
Confidence 4689999999999998764 3344 89999999943 2 2579999999
Q ss_pred CCCCeeeeEEEEeecCCCceEEEEEE-ecCCCC-CceeeeEeeeceeccCCCceeeeeeeccC
Q 045478 100 CENPFWDEHFCVPVAHSVVNLEFHVK-DNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGS 160 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~~~~l~~~V~-d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 160 (852)
+.||.|||+|.|.+......+.|+|| |.+.++ +++||.+.|++.++..+.....||+|..+
T Consensus 77 tlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 77 TLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 99999999999999866677899999 566666 89999999999999878888999999643
No 53
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.60 E-value=3.8e-15 Score=137.44 Aligned_cols=100 Identities=19% Similarity=0.351 Sum_probs=85.1
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC---eeEEEeeeecCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG---ATVAQTRVISNCE 101 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~---~~~~rT~vi~~s~ 101 (852)
-.|.|.|+|++|++|+ + .+. +||||+|++.. ....+|++.+++.
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~------------------------------sDPYVKv~L~~~~k~~k~kT~v~rktl 58 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAG------------------------------CECYISGCVSVSEGQKEAQTALKKLAL 58 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCC------------------------------CCeEEEEEEcCCcCccEEEcceecCCC
Confidence 3689999999999998 2 243 89999999963 2357999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
||+|||+|.|.++.. ...+.|+|+|.|.++ +++||++.+++.++..+...+.|-.|
T Consensus 59 nPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 59 HTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 999999999998763 456899999999998 99999999999998767777788754
No 54
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.60 E-value=4.1e-15 Score=140.71 Aligned_cols=103 Identities=28% Similarity=0.467 Sum_probs=91.5
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCENP 103 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~nP 103 (852)
.|.|.|+|++|++|++++..+. +||||+|.+. +..++||+++.++.||
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~l~~~~~~~~kT~v~~~t~~P 64 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT------------------------------ADPYCKVRLLPDRSNTKQSKIHKKTLNP 64 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------CCCeEEEEEecCCCCcEeCceEcCCCCC
Confidence 4889999999999999887665 8999999993 3556899999999999
Q ss_pred eeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 104 FWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 104 ~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
.|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++.++..++..+.|++|.
T Consensus 65 ~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 65 EFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999998764 357899999999887 999999999999999888899999984
No 55
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.60 E-value=6.3e-15 Score=139.37 Aligned_cols=104 Identities=32% Similarity=0.502 Sum_probs=91.4
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCEN 102 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~n 102 (852)
-.|.|.|+|++|++|+.++..+. +||||+|.+.+ ..+.||+++.++.|
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------~dpyv~v~l~~~~~~~~kT~v~~~t~n 63 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT------------------------------SDPYVKVYLLPDKKKKFETKVHRKTLN 63 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------CCCEEEEEEEcCCCCceecccCcCCCC
Confidence 35899999999999998887665 89999999853 35689999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
|.|||+|.|.+... ...+.|+|+|.+.++ +++||++.+++.++..|...+.|++|.
T Consensus 64 P~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 64 PVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999999998752 457899999999887 899999999999998888899999984
No 56
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.58 E-value=1.2e-14 Score=137.29 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=94.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|+|+|++|++|+.++.++. +||||++++++..++||+++.++.||.|||+
T Consensus 2 l~v~v~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~ 51 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL------------------------------PDPFAVITVDGGQTHSTDVAKKTLDPKWNEH 51 (123)
T ss_pred eEEEEEEecCCCccCCCCC------------------------------CCcEEEEEECCccceEccEEcCCCCCcccce
Confidence 7899999999999887766 8999999998666699999999999999999
Q ss_pred EEEeecCCCceEEEEEEecCCCC---CceeeeEeeeceeccCCC-ceeeeeeeccCCCC-CCCCCCEEEEEE
Q 045478 109 FCVPVAHSVVNLEFHVKDNDILG---AELIGVVQIPVEKILCGN-EVDDWFPIAGSYGK-NLKPFPQLHVSM 175 (852)
Q Consensus 109 f~~~~~~~~~~l~~~V~d~d~~~---~~~iG~~~i~l~~l~~g~-~~~~w~~L~~~~g~-~~k~~g~l~l~l 175 (852)
|.|++.. ...+.|+|+|.+..+ +++||++.+++.++.... ....|++|...... .....|+|.+++
T Consensus 52 f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 52 FDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999965 678999999998876 479999999999987433 34679999543321 123356776654
No 57
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.58 E-value=2.4e-14 Score=135.82 Aligned_cols=114 Identities=23% Similarity=0.364 Sum_probs=96.0
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCCCee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCENPFW 105 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~nP~W 105 (852)
.|.|+|++|++|+.++..+. +||||+|.+.+ ...+||+++.++.||.|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~W 51 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------SDPYVTLVDTNGKRRIAKTRTIYDTLNPRW 51 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------CCceEEEEECCCCeeeecccEecCCCCCcc
Confidence 48999999999999887665 89999999864 35689999999999999
Q ss_pred eeEEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceeccC---CCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 106 DEHFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKILC---GNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 106 nE~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
||+|.|++.+. ...+.|+|+|.+..+ +++||++.+++.++.. |...+.|++|. +.|+|++++.+.-
T Consensus 52 ne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--------~~g~i~l~~~~~~ 122 (126)
T cd04043 52 DEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD--------TQGRLLLRVSMEG 122 (126)
T ss_pred cceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC--------CCCeEEEEEEEee
Confidence 99999999874 567899999999886 8999999999987653 44678899993 2478888887754
No 58
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.58 E-value=2.6e-14 Score=137.32 Aligned_cols=118 Identities=23% Similarity=0.342 Sum_probs=97.2
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|+|+|++|++|++++..+. +||||+|.+.+.. .||+++.++.||.|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne 50 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------SDPFARVSFLNQS-QETEVIKETLSPTWDQ 50 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------CCCEEEEEECCee-eEeeeEcCCCCCccCc
Confidence 48999999999999987776 8999999998765 8999999999999999
Q ss_pred EEEEeecCC----------CceEEEEEEecCCCC-CceeeeEee-eceeccC---CCceeeeeeeccCCCCCCCCCCEEE
Q 045478 108 HFCVPVAHS----------VVNLEFHVKDNDILG-AELIGVVQI-PVEKILC---GNEVDDWFPIAGSYGKNLKPFPQLH 172 (852)
Q Consensus 108 ~f~~~~~~~----------~~~l~~~V~d~d~~~-~~~iG~~~i-~l~~l~~---g~~~~~w~~L~~~~g~~~k~~g~l~ 172 (852)
.|.|.+... ...+.|+|+|.+..+ +++||++.+ |+..+.. +.....|++|. ..+ +..|+|.
T Consensus 51 ~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~---~~~Geil 126 (135)
T cd04017 51 TLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGG---QSAGELL 126 (135)
T ss_pred EEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCC---Cchhhee
Confidence 999975321 246799999999888 899999987 5555542 45678999994 333 4679999
Q ss_pred EEEEeeec
Q 045478 173 VSMQYKPI 180 (852)
Q Consensus 173 l~l~f~~~ 180 (852)
|++++.++
T Consensus 127 ~~~~~~~~ 134 (135)
T cd04017 127 AAFELIEV 134 (135)
T ss_pred EEeEEEEe
Confidence 99999876
No 59
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.58 E-value=2e-14 Score=136.55 Aligned_cols=114 Identities=22% Similarity=0.404 Sum_probs=95.4
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|+|+|++|++|+.+|..+. +||||+|.+++.. +||+++.++.||.|||
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------~DPyv~v~~~~~~-~kT~~v~~t~~P~Wne 50 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------SDPYVTVQVGKTK-KRTKTIPQNLNPVWNE 50 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------cCcEEEEEECCEe-eecceecCCCCCccce
Confidence 58999999999999887666 8999999997655 8999999999999999
Q ss_pred EEEEeecCCCceEEEEEEecCCC------------CCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEE
Q 045478 108 HFCVPVAHSVVNLEFHVKDNDIL------------GAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSM 175 (852)
Q Consensus 108 ~f~~~~~~~~~~l~~~V~d~d~~------------~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l 175 (852)
+|.|.+..+...+.|+|+|.+.. ++++||.+.+++.++. ...+.|++|... +...+..|+|.++|
T Consensus 51 ~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~-~~~~~~~G~i~~~~ 127 (127)
T cd04027 51 KFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKR-TDKSAVSGAIRLHI 127 (127)
T ss_pred EEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccC-CCCCcEeEEEEEEC
Confidence 99999987767889999998752 3889999999999875 335789999544 34445688888864
No 60
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.57 E-value=9.8e-15 Score=135.29 Aligned_cols=98 Identities=28% Similarity=0.479 Sum_probs=85.4
Q ss_pred eEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCCC
Q 045478 27 GDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCENP 103 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~nP 103 (852)
|+|+|+|++|++|++++.. +. +||||+|.+.. ..+.+|+++.++.||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------~Dpyv~v~~~~~~~~~~kT~v~~~t~nP 50 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------SDPYVTASFAKFGKPLYSTRIIRKDLNP 50 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------CCccEEEEEccCCCccEeeeeECCCCCC
Confidence 7899999999999998876 55 89999999853 345899999999999
Q ss_pred eeeeEEEEeecCC----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 104 FWDEHFCVPVAHS----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 104 ~WnE~f~~~~~~~----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
.|||+|.|.+... ...+.|+|+|++.++ +++||.+.+++.++.. ..+|+++
T Consensus 51 ~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 51 VWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred ccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 9999999987653 457899999999987 8999999999999983 4579887
No 61
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.57 E-value=1.6e-14 Score=136.75 Aligned_cols=103 Identities=25% Similarity=0.442 Sum_probs=88.6
Q ss_pred eeeEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~ 99 (852)
..|+|.|+|++|++|+..+.. +. +||||+|++.. ....||+++.+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~------------------------------~DpyVkv~l~p~~~~~~~~kT~v~~~ 62 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKR------------------------------SNPYVKTYLLPDKSRQSKRKTSIKRN 62 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCC------------------------------CCcEEEEEEEcCCccccceEeeeeeC
Confidence 358899999999999987642 33 89999999842 23479999999
Q ss_pred CCCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 100 CENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
+.||.|||+|.|.+... ...+.|+|+|.+.++ +++||.+.|++.++...+..+.|++|
T Consensus 63 t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 63 TTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred CCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999998652 456899999999887 89999999999999988889999998
No 62
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.56 E-value=4.2e-14 Score=132.15 Aligned_cols=112 Identities=31% Similarity=0.550 Sum_probs=89.5
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|++|++|+.+ +. +||||.|++++..++||+++.+ .||.|||+
T Consensus 2 L~v~vi~a~~l~~~---~~------------------------------~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~ 47 (117)
T cd08383 2 LRLRILEAKNLPSK---GT------------------------------RDPYCTVSLDQVEVARTKTVEK-LNPFWGEE 47 (117)
T ss_pred eEEEEEEecCCCcC---CC------------------------------CCceEEEEECCEEeEecceEEC-CCCcccce
Confidence 78999999999865 33 8999999999877799999999 99999999
Q ss_pred EEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 109 FCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 109 f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|.|.+.+. ...+.|.++|.+..+ +..+|+ +++..+..+...+.||+|....+. .+..|+|+|+++|
T Consensus 48 f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 117 (117)
T cd08383 48 FVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPD-SEVQGSVRLRARY 117 (117)
T ss_pred EEEecCCccccEEEEEEEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCC-CCcCceEEEEEEC
Confidence 99999873 456788888877654 455555 555556667888999999654432 2567899999987
No 63
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.56 E-value=1.4e-14 Score=137.25 Aligned_cols=102 Identities=24% Similarity=0.407 Sum_probs=87.9
Q ss_pred eeEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
.+.|.|+|++|++|+.++.. +. +||||+|++.. ....||+++.++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~------------------------------~dpyVkv~l~p~~~~~~~~kT~v~~~t 63 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQR------------------------------SDPYVKTYLLPDKSNRGKRKTSVKKKT 63 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCC------------------------------CCcEEEEEEEcCCCccccccCccCcCC
Confidence 36899999999999998864 44 89999999942 234799999999
Q ss_pred CCCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
.||.|||+|.|.+.. ....+.|+|+|.+..+ +++||.+.|++.++..++....||+|
T Consensus 64 ~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 64 LNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred CCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 999999999999864 2457899999999887 89999999999999877778899997
No 64
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.56 E-value=1.2e-14 Score=141.20 Aligned_cols=102 Identities=26% Similarity=0.413 Sum_probs=80.6
Q ss_pred EEEEEEEEecCCCCCCCcch--hhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 28 DLDLSILEAKSLPNMDLITE--SMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
+|.|+|++|++|+++|..+. .+.+.+ ......+||||+|.+++.+ .||+++.++.||+|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~------------------~~~~~~~DPYV~V~~~g~~-~kT~v~~~t~nPvW 61 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFL------------------GEKKELVDPYVEVSFAGQK-VKTSVKKNSYNPEW 61 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccc------------------cCCCCCcCcEEEEEECCEe-eecceEcCCCCCCc
Confidence 47999999999999985441 000000 0111127999999999887 69999999999999
Q ss_pred eeEEEEeecC--CCceEEEEEEecCCCC-CceeeeEeeeceeccCC
Q 045478 106 DEHFCVPVAH--SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG 148 (852)
Q Consensus 106 nE~f~~~~~~--~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g 148 (852)
||+|.|++.. ....+.|+|+|.+..+ +++||++.|++.++...
T Consensus 62 NE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 62 NEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred ceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 9999998653 3567899999999886 99999999999998754
No 65
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.56 E-value=1.8e-14 Score=132.58 Aligned_cols=97 Identities=19% Similarity=0.343 Sum_probs=80.9
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|+..+..+. ...++||||+|++++.. .||+++.++.||+||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~--------------------------~~~~~DPYv~v~~~~~~-~kT~v~~~t~nPvWn 53 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR--------------------------TGFDMDPFVIISFGRRV-FRTSWRRHTLNPVFN 53 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC--------------------------CCCccCceEEEEECCEe-EeeeeecCCCCCccc
Confidence 789999999999998764321 00027999999997654 799999999999999
Q ss_pred eEEEEeecCCC--ceEEEEEEecCCCC-CceeeeEeeeceeccCCCc
Q 045478 107 EHFCVPVAHSV--VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE 150 (852)
Q Consensus 107 E~f~~~~~~~~--~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~ 150 (852)
|.|.|++.+.. ..+.|+|||++..+ +++||++.+++.++..+..
T Consensus 54 e~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 54 ERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred ceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhCC
Confidence 99999986533 46799999999888 9999999999999997654
No 66
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.56 E-value=2.7e-14 Score=132.32 Aligned_cols=98 Identities=26% Similarity=0.476 Sum_probs=85.8
Q ss_pred CCCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCC-CceEEEEEEecCCCCCceeeeEeeeceeccC-CCceeee
Q 045478 77 TSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILC-GNEVDDW 154 (852)
Q Consensus 77 ~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~-g~~~~~w 154 (852)
.+||||.|.+++...++|+++.++.||+|||+|.|.+.+. ...+.|+|+|.+.+++++||++.++|.++.. +...+.|
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w 91 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQW 91 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcccee
Confidence 3899999999987779999999999999999999999875 4668999999998889999999999999864 4556899
Q ss_pred eeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 155 FPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 155 ~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
|+|.+ ++.|+|+++++|+|+
T Consensus 92 ~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 92 FPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred EECCC------CCCCEEEEEEEEecC
Confidence 99953 356999999999986
No 67
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.55 E-value=2.8e-14 Score=138.51 Aligned_cols=102 Identities=23% Similarity=0.376 Sum_probs=84.6
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCCCCC
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNCENP 103 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s~nP 103 (852)
.|.|+|++|++|+. ..+. +||||+|.+.+. ...||+++.++.||
T Consensus 1 kL~V~Vi~ArnL~~--~~g~------------------------------sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP 48 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGT------------------------------CDPYASVTLIYSNKKQDTKRTKVKKKTNNP 48 (148)
T ss_pred CEEEEEEeCcCCCC--CCCC------------------------------CCceEEEEEeCCcccCcccCCccEeCCCCC
Confidence 38999999999986 3343 899999999752 34799999999999
Q ss_pred eeeeEEEEeecC----------------CCceEEEEEEecCCCC-CceeeeEeeeceeccCC-CceeeeeeeccCC
Q 045478 104 FWDEHFCVPVAH----------------SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG-NEVDDWFPIAGSY 161 (852)
Q Consensus 104 ~WnE~f~~~~~~----------------~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g-~~~~~w~~L~~~~ 161 (852)
+|||+|.|.+.. ....+.|+|||.+..+ +++||++.||+..+..+ ...+.||+|....
T Consensus 49 ~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 49 QFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred ccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 999999999841 1245799999999876 99999999999999976 6678999995443
No 68
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.55 E-value=2.5e-14 Score=135.87 Aligned_cols=101 Identities=26% Similarity=0.443 Sum_probs=88.5
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCCC
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCEN 102 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~n 102 (852)
+.|.|+|++|++|++++..+. +||||+|.+.. ....||++++++.|
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~~~n 65 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI------------------------------PDPYVRLYLLPDKSKSTRRKTSVKKDNLN 65 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC------------------------------CCceEEEEEEcCCCCCceEecccccCCCC
Confidence 789999999999999887665 89999999853 34589999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCC--C-CceeeeEeeeceeccCCCceeeeeee
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDIL--G-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~--~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
|+|||+|.|.+... ...+.|+|+|.+.+ + +++||.+.|++.++..+...++||+|
T Consensus 66 P~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 66 PVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred CEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 99999999998643 35789999999875 4 89999999999999888888999997
No 69
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.55 E-value=3e-14 Score=134.72 Aligned_cols=100 Identities=22% Similarity=0.402 Sum_probs=90.0
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecC-CCCCee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISN-CENPFW 105 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~-s~nP~W 105 (852)
|.|+|+|++|++|++++.++. +||||+|++++.. .+|+++.+ +.||.|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~~~-~~T~~~~~~t~nP~W 49 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------IDPYVIIQCRTQE-RKSKVAKGDGRNPEW 49 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------cCceEEEEECCEe-eeeeEcCCCCCCCcc
Confidence 789999999999999887665 8999999998765 78998875 899999
Q ss_pred eeEEEEeecCC----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 106 DEHFCVPVAHS----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 106 nE~f~~~~~~~----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
||+|.|.+..+ ...+.|+|+|.+.++ +++||.+.+++.++..++..+.|++|
T Consensus 50 ne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 50 NEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred cceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 99999999876 467899999999886 89999999999999988888999998
No 70
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=5.2e-14 Score=131.20 Aligned_cols=111 Identities=29% Similarity=0.481 Sum_probs=94.8
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|+|+|++|++|++.+..+. +||||+|.+.+..+++|+++.++.+|.|||+
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~ 50 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------SDPFVKFYLNGEKVFKTKTIKKTLNPVWNES 50 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------CCCeEEEEECCCcceeeceecCCCCCccccc
Confidence 5899999999998876655 8999999998777789999999999999999
Q ss_pred EEEeecC-CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEE
Q 045478 109 FCVPVAH-SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLH 172 (852)
Q Consensus 109 f~~~~~~-~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~ 172 (852)
|.|.+.. ....+.|+|+|.+..+ +++||++.+++.++..+...+.|++|....+ ...|.|.
T Consensus 51 f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~---~~~~~~~ 113 (115)
T cd04040 51 FEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG---GKLGAVF 113 (115)
T ss_pred EEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC---ccCceEE
Confidence 9999876 3567899999999887 8999999999999998888899999954433 3445553
No 71
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.54 E-value=2.9e-14 Score=135.36 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=86.8
Q ss_pred eeEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s 100 (852)
.+.|.|+|++|++|+.++.. +. +||||++++... ...||+++.++
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~------------------------------~dpYVkv~llp~~~~~~k~kT~v~~~t 63 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK------------------------------CHPYVKVCLLPDKSHNSKRKTAVKKGT 63 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC------------------------------CCeEEEEEEEeCCcccceeecccccCC
Confidence 47899999999999988764 44 899999998532 34699999999
Q ss_pred CCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccC---CCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILC---GNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L 157 (852)
.||+|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++.++.. +.....||+|
T Consensus 64 ~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 64 VNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999999999998653 467899999999877 8999999999999864 3467899997
No 72
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.53 E-value=3.7e-14 Score=134.20 Aligned_cols=101 Identities=29% Similarity=0.478 Sum_probs=85.6
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|+.++..+. +||||+|.+.+ ..+.||+++.++.
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~ 64 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------RNPYVKVYLLPDRSEKSKRRTKTVKKTL 64 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------CCCEEEEEEccCCCccccccccccCCCC
Confidence 4789999999999998887665 89999999964 2457999999999
Q ss_pred CCeeeeEEEEeecC----CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 102 NPFWDEHFCVPVAH----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 102 nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
||.|||+|.|.+.. ....+.|+|+|.+..+ +++||++.+++.+.. ......||+|
T Consensus 65 nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 65 NPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred CCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 99999999998654 2467899999999887 899999999999843 3335689998
No 73
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.53 E-value=7.5e-14 Score=140.25 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=108.8
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
.++++.++++|.+|+++|+|+.|.+.+.. . .....|.++|.+++++||+|+||+++.. ....
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~---~--------~~~~~l~~~L~~a~~rGv~V~il~~~~~-~~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI---T--------EYGPVILDALLAAARRGVKVRILVDEWS-NTDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc---c--------ccchHHHHHHHHHHHCCCEEEEEEcccc-cCCc------
Confidence 67899999999999999999999876532 0 1136999999999999999999984433 2110
Q ss_pred ccccCCcHHHHhhhcCC---CCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCc
Q 045478 319 GVMQTHDEETRKFFKHS---SVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGR 395 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~---gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r 395 (852)
.........|... ++++...+.... ...++|+|++|||++ ++++||.|+.+..
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 0012334445543 788775432110 135899999999998 9999999999944
Q ss_pred cCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh--HHHHHHHHHHHHHhhh
Q 045478 396 YDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP--AAYDILINFEQRWRRS 457 (852)
Q Consensus 396 ~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp--aa~dl~~~F~~rW~~~ 457 (852)
+ ..++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 138 ~--------------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 L--------------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred h--------------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 3 1466899999999 7999999999999963
No 74
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.53 E-value=3.6e-14 Score=133.88 Aligned_cols=102 Identities=29% Similarity=0.540 Sum_probs=88.0
Q ss_pred eeEEEEEEEEecCCCCCC-CcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMD-LITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s 100 (852)
.|.|.|+|++|++|+.++ ..+. +||||+|.+.. . ..+||+++.++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t 62 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKR------------------------------SNPYVKVYLLPDKSKQSKRKTSVKKNT 62 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCC------------------------------CCcEEEEEEecCCCcCceeeccccCCC
Confidence 588999999999999887 4443 89999999842 1 45899999999
Q ss_pred CCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
.||.|||+|.|.+... ...+.|+|+|.+..+ +++||++.+++.++..+...+.||+|
T Consensus 63 ~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 63 TNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999999997653 457899999999887 89999999999999888888999986
No 75
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.53 E-value=6.5e-14 Score=132.64 Aligned_cols=103 Identities=29% Similarity=0.426 Sum_probs=88.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCENP 103 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~nP 103 (852)
.+.|.|+|++|++|+.++..+. +||||+|.+. +....||+++.++.||
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------~dpyv~v~~~~~~~~~~kT~v~~~t~~P 64 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------SDPFVKIYLLPDKKHKLETKVKRKNLNP 64 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------CCceEEEEECCCCCcceeeeeecCCCCC
Confidence 4679999999999998887665 8999999993 3445899999999999
Q ss_pred eeeeEEEEeecC----CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 104 FWDEHFCVPVAH----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 104 ~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
.|||+|.|.+.. ....+.|+|+|.+..+ +++||++.|++.++..+...+.|++|.
T Consensus 65 ~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 65 HWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred ccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999997532 2346899999999887 899999999999999888899999983
No 76
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.53 E-value=4e-14 Score=133.33 Aligned_cols=102 Identities=21% Similarity=0.369 Sum_probs=86.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-----eeEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-----ATVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-----~~~~rT~vi~~s 100 (852)
.+.|.|+|++|+||++++..+. +||||++++-. ....||+++.++
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~------------------------------~dpyVKv~Llp~~~~~~~~~kT~v~~~t 62 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN------------------------------SKVYVRVALLPCSSSTSCLFRTKALEDQ 62 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC------------------------------CCeEEEEEEccCCCCCCceEEcCccCCC
Confidence 5789999999999998865444 89999999842 135899999999
Q ss_pred CCCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccC-CCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILC-GNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~-g~~~~~w~~L 157 (852)
.||+|||+|.|++.+ ....+.|+||+.+..+ +++||.+.|++.++.. +.....||+|
T Consensus 63 ~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 63 DKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999999999876 3567899999999887 8999999999999954 4457889975
No 77
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.52 E-value=2.4e-14 Score=137.16 Aligned_cols=108 Identities=20% Similarity=0.317 Sum_probs=92.0
Q ss_pred eeEEEEEEEEecCCCCCCCc--chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecC
Q 045478 26 HGDLDLSILEAKSLPNMDLI--TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISN 99 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~ 99 (852)
-|.|.|+|++|+||+.++.. +. +||||+|++... ...||+++++
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~------------------------------~DpYVKv~l~~~~~k~~kkkT~v~k~ 63 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLG------------------------------IDVSVKVTLKHQNAKLKKKQTKRAKH 63 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCC------------------------------CCeEEEEEEEcCCcccceeccceeeC
Confidence 58899999999999988742 32 899999998642 2469999999
Q ss_pred CCCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCC
Q 045478 100 CENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNL 165 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~ 165 (852)
+.||+|||+|.|.+++. ...+.|+|+|.+.++ +++||++.+++.. .|+..++|..++...+++.
T Consensus 64 t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 64 KINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred CCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 99999999999998863 456899999999988 9999999999974 6888899999988777653
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.52 E-value=2.8e-14 Score=136.71 Aligned_cols=107 Identities=27% Similarity=0.401 Sum_probs=91.9
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|++++..+. +||||+|.+.. ....||+++.++.
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~------------------------------~DpyV~v~l~~~~~~~~~~kT~v~~~t~ 61 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGY------------------------------SDPFVKLYLKPDAGKKSKHKTQVKKKTL 61 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCC------------------------------CCcEEEEEEEcCCCccCCceeeeEeccC
Confidence 4889999999999999887665 89999999853 2457999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|+|.+..+ +++||.+.|++.. .|+..+.|++++...+++
T Consensus 62 nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 62 NPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred CCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 999999999998753 356899999999877 8999999999974 567788999998776655
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.51 E-value=6.2e-14 Score=136.50 Aligned_cols=99 Identities=28% Similarity=0.498 Sum_probs=86.7
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe---------------
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA--------------- 89 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~--------------- 89 (852)
..+.|.|+|++|++|+++|..+. +||||+|.+...
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------~DPyv~v~l~~~~~~~~~~~~~~~~~~ 75 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGF------------------------------SDPYCMLGIVPASRERNSEKSKKRKSH 75 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCC------------------------------CCceEEEEEcccccccccccccccccc
Confidence 46899999999999999987776 899999998532
Q ss_pred -------------eEEEeeeecCCCCCeeeeEEEEeecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeee
Q 045478 90 -------------TVAQTRVISNCENPFWDEHFCVPVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWF 155 (852)
Q Consensus 90 -------------~~~rT~vi~~s~nP~WnE~f~~~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~ 155 (852)
.+++|+++.++.||.|||+|.|.+.+. ...+.|+|+|.+ +++||++.+++.++. +..+++||
T Consensus 76 ~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~-~~~~d~W~ 151 (153)
T cd08676 76 RKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP-SCGLDSWF 151 (153)
T ss_pred cccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhC-CCCCCCeE
Confidence 357999999999999999999999764 467899999987 889999999999998 45589999
Q ss_pred ee
Q 045478 156 PI 157 (852)
Q Consensus 156 ~L 157 (852)
+|
T Consensus 152 ~L 153 (153)
T cd08676 152 KL 153 (153)
T ss_pred eC
Confidence 86
No 80
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.51 E-value=1.9e-13 Score=132.94 Aligned_cols=98 Identities=17% Similarity=0.294 Sum_probs=81.8
Q ss_pred CCcEEEEEE----CCeeEEEeeeecCCCCCeeeeEEEEeecCC---------CceEEEEEEecCCC-C-CceeeeEeeec
Q 045478 78 SNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPVAHS---------VVNLEFHVKDNDIL-G-AELIGVVQIPV 142 (852)
Q Consensus 78 sdpYv~v~l----~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~---------~~~l~~~V~d~d~~-~-~~~iG~~~i~l 142 (852)
+||||++++ ......||+++++|.||+|||+|.|.+... ...+.|+|||.+.+ + |++||++.+++
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 899999997 333568999999999999999999998654 24589999999886 3 99999999999
Q ss_pred eeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 143 EKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 143 ~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
..+.....+..|++|++... +.+|+|+++++.-
T Consensus 105 ~~l~~~~~~~~~~~L~~~~k---~~Gg~l~v~ir~r 137 (155)
T cd08690 105 EPLETKCEIHESVDLMDGRK---ATGGKLEVKVRLR 137 (155)
T ss_pred ccccccCcceEEEEhhhCCC---CcCCEEEEEEEec
Confidence 99987777888999975332 4688999988854
No 81
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.50 E-value=4.2e-14 Score=135.68 Aligned_cols=108 Identities=33% Similarity=0.482 Sum_probs=91.7
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--Ce--eEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GA--TVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~--~~~rT~vi~~s 100 (852)
.+|.|+|+|++|++|++++.++. +||||+|.+. +. ...||+++.++
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~------------------------------~dpyvkv~l~~~~~~~~~~kT~v~~~t 61 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGF------------------------------SDPYVKVSLMCEGRRLKKKKTSVKKNT 61 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCC------------------------------CCceEEEEEEeCCcccceecCCcccCC
Confidence 46899999999999999988776 8999999984 22 35799999999
Q ss_pred CCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 101 ENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
.||.|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++. ..++..++|++++..++++
T Consensus 62 ~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~ 127 (134)
T cd08403 62 LNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKP 127 (134)
T ss_pred CCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCe
Confidence 9999999999997643 235899999999988 999999999987 4466678999998877765
No 82
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.50 E-value=1.7e-13 Score=130.23 Aligned_cols=102 Identities=29% Similarity=0.375 Sum_probs=84.9
Q ss_pred eeEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCEN 102 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~n 102 (852)
.++|.|+|++|++|+.++.. +. +||||+|.+.. ....||+++.++.|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~------------------------------~DpyV~v~l~~~~~~~~kT~v~~~t~n 64 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGT------------------------------SDPYVKLQLLPEKEHKVKTRVLRKTRN 64 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCC------------------------------cCCEEEEEEeCCcCceeeccEEcCCCC
Confidence 46899999999999988765 43 89999999853 34579999999999
Q ss_pred CeeeeEEEEe-ecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCC--Cceeeeeee
Q 045478 103 PFWDEHFCVP-VAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG--NEVDDWFPI 157 (852)
Q Consensus 103 P~WnE~f~~~-~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g--~~~~~w~~L 157 (852)
|.|||+|.|. +.. ....+.|+|+|.+.++ +++||++.|++.++..+ +....|++|
T Consensus 65 P~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 65 PVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred CceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999994 332 2346899999998887 99999999999999644 667889987
No 83
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.50 E-value=1.4e-13 Score=127.65 Aligned_cols=97 Identities=23% Similarity=0.366 Sum_probs=83.7
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|+|+|++|++|+ .+. +||||+|++++.+ .||+++.++.||.|||
T Consensus 5 ~l~V~v~~a~~L~----~~~------------------------------~dpyv~v~~~~~~-~kT~~~~~t~nP~wne 49 (111)
T cd04011 5 QVRVRVIEARQLV----GGN------------------------------IDPVVKVEVGGQK-KYTSVKKGTNCPFYNE 49 (111)
T ss_pred EEEEEEEEcccCC----CCC------------------------------CCCEEEEEECCEe-eeeeEEeccCCCcccc
Confidence 4899999999998 222 8999999999876 7999999999999999
Q ss_pred EEEEeecCCC-----ceEEEEEEecCCCC-CceeeeEeeeceeccCC---Cceeeeeeecc
Q 045478 108 HFCVPVAHSV-----VNLEFHVKDNDILG-AELIGVVQIPVEKILCG---NEVDDWFPIAG 159 (852)
Q Consensus 108 ~f~~~~~~~~-----~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g---~~~~~w~~L~~ 159 (852)
+|.|.+..+. ..+.|+|+|.+.++ +++||++.+++.++..+ .....|++|.+
T Consensus 50 ~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 50 YFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred EEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9999976543 56899999999887 89999999999999865 34688999965
No 84
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.49 E-value=5.9e-14 Score=135.03 Aligned_cols=107 Identities=26% Similarity=0.442 Sum_probs=91.0
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s~ 101 (852)
.+.|.|+|++|++|+.++.++. +||||+|.+.. . ...||+++.++.
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~------------------------------~Dpyv~v~l~~~~~~~~~~kT~v~k~t~ 63 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL------------------------------ADPYVKVNLYYGKKRISKKKTHVKKCTL 63 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC------------------------------CCeEEEEEEEcCCceeeeEcCccccCCC
Confidence 5789999999999999887765 89999999843 2 246899999999
Q ss_pred CCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+.. ....+.|+|+|.+.++ +++||++.+++.. .+...+.|++|.+..|++
T Consensus 64 nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 64 NPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred CCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCe
Confidence 99999999999865 2356799999999887 9999999999988 467788999998776754
No 85
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.49 E-value=6e-14 Score=134.95 Aligned_cols=107 Identities=25% Similarity=0.401 Sum_probs=91.3
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--Ce--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GA--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~--~~~rT~vi~~s~ 101 (852)
.|+|.|+|++|++|+.++..+. +||||+|.+. +. ...||+++.++.
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~------------------------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~ 63 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGT------------------------------SDPYVKVWLMYKDKRVEKKKTVIKKRTL 63 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC------------------------------CCceEEEEEEeCCCccccccCcceeCCC
Confidence 4889999999999998887665 8999999983 22 347999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++.+. |...++|++|+...+++
T Consensus 64 ~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 64 NPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred CCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 999999999987532 356899999999887 89999999999876 67788999998877765
No 86
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.49 E-value=4.4e-14 Score=135.90 Aligned_cols=108 Identities=31% Similarity=0.477 Sum_probs=91.7
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s 100 (852)
.+|.|.|+|++|++|++++..+. +||||+|.+.. . ...+|+++.++
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t 62 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL------------------------------SDPYVKIHLMQNGKRLKKKKTTIKKRT 62 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC------------------------------CCCeEEEEEEECCcccceeeccceeCC
Confidence 46899999999999999887665 89999999842 2 34789999999
Q ss_pred CCCeeeeEEEEeecCCC---ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 101 ENPFWDEHFCVPVAHSV---VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~---~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
.||.|||+|.|++.... ..+.|+|+|.+.++ +++||.+.|++.. .|...++|++|+...+++
T Consensus 63 ~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 63 LNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRP 128 (136)
T ss_pred CCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCe
Confidence 99999999999986532 46899999999888 8999999999975 477789999998776655
No 87
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.48 E-value=7.3e-14 Score=133.84 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=90.1
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--ee--EEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--AT--VAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~--~~rT~vi~~s~ 101 (852)
.+.|.|+|++|++|+.++..+. +||||+|++.. .+ ..||++++++.
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~------------------------------~DpyVkv~l~~~~~~~~k~kT~v~k~t~ 63 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT------------------------------ADPFVKVYLLQDGRKISKKKTSVKRDDT 63 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------CCeEEEEEEEeCCccccccCCccccCCC
Confidence 4789999999999998886655 89999999842 22 35899999999
Q ss_pred CCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||+|||+|.|.+.. ....+.|+|+|.+..+ +++||++.|+.. ..|+..++|..++...+++
T Consensus 64 nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 64 NPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKP 128 (136)
T ss_pred CCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCe
Confidence 99999999999875 3466899999999887 999999999765 4677789999998877755
No 88
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.48 E-value=3.7e-13 Score=152.53 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=103.5
Q ss_pred CCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCC
Q 045478 505 ENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGA 584 (852)
Q Consensus 505 ~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~ 584 (852)
.+|.+|++.|++.+- .|+. .-.+.+++|+++|.+||++|+|+++||+++. ..
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d-----~~---- 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSD-----EV---- 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCc-----cc----
Confidence 457889999997653 2321 1257899999999999999999999999421 00
Q ss_pred CCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEE
Q 045478 585 DNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSF 664 (852)
Q Consensus 585 ~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f 664 (852)
....+..+..+|.++ +.+||+|+|+++.. + ... . ..+.|+++|+++. .
T Consensus 56 ~~~~G~~i~~aL~~a--A~rGV~VRIL~d~~--~---~~~----------~-------~~~~L~~aGv~v~--------~ 103 (424)
T PHA02820 56 GTNFGTMILNEIIQL--PKRGVRVRIAVNKS--N---KPL----------K-------DVELLQMAGVEVR--------Y 103 (424)
T ss_pred cchhHHHHHHHHHHH--HHCCCEEEEEECCC--C---Cch----------h-------hHHHHHhCCCEEE--------E
Confidence 011245566677666 45889999999842 1 110 0 1467889998752 2
Q ss_pred eeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEec
Q 045478 665 YCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQ 740 (852)
Q Consensus 665 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d 740 (852)
|.... +. ...+|+|+||||+++++|||+||+.||+..| .|+++.+.+
T Consensus 104 ~~~~~-------~~--------------------~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n--~E~gv~i~~ 150 (424)
T PHA02820 104 IDITN-------IL--------------------GGVLHTKFWISDNTHIYLGSANMDWRSLTQV--KELGIAIFN 150 (424)
T ss_pred EecCC-------CC--------------------cccceeeEEEECCCEEEEeCCcCChhhhhhC--CceEEEEec
Confidence 22110 11 1379999999999999999999999999855 899988865
No 89
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.48 E-value=2.3e-13 Score=128.45 Aligned_cols=102 Identities=26% Similarity=0.439 Sum_probs=88.3
Q ss_pred eeEEEEEEEEecCCCCCC-CcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCC
Q 045478 26 HGDLDLSILEAKSLPNMD-LITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCEN 102 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~n 102 (852)
.+.|.|+|++|++|++++ .++. +||||+|++. +...+||+++.++.|
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------~dpyV~v~l~~~~~~~~~T~v~~~~~~ 62 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH------------------------------CDPFVKVCLLPDERRSLQSKVKRKTQN 62 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC------------------------------CCcEEEEEEeeCCCCceEeeeEcCCCC
Confidence 578999999999999887 4444 8999999984 344589999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
|.|||.|.|.+... ...+.|+|+|.+..+ +++||++.+++.++........|++|
T Consensus 63 P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 63 PNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred CccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 99999999997653 356899999998887 89999999999999987778899998
No 90
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.47 E-value=2.6e-13 Score=131.38 Aligned_cols=93 Identities=28% Similarity=0.537 Sum_probs=83.8
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|+..+. +. +||||+|.+++.. .||+++.++.||+||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------sDPYV~v~~g~~~-~kT~vvk~t~nP~Wn 49 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------SDPYVVLTLGNQK-VKTRVIKKNLNPVWN 49 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------cCcEEEEEECCEE-EEeeeEcCCCCCeec
Confidence 899999999999998775 43 8999999998766 899999999999999
Q ss_pred eEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCce
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEV 151 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~ 151 (852)
|+|.|.+.++...+.|+|+|++.++ +++||.+.+++.++......
T Consensus 50 E~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 50 EELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred ccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence 9999999988888999999999888 89999999999998865433
No 91
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.47 E-value=2.2e-13 Score=131.07 Aligned_cols=99 Identities=20% Similarity=0.414 Sum_probs=86.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC---eeEEEeeeecCCCCCee
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG---ATVAQTRVISNCENPFW 105 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~---~~~~rT~vi~~s~nP~W 105 (852)
|.|+|++|++|+.+ ..+. +||||+|.+.. ..+.||+++.++.||.|
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~W 49 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------CDPFARVTLNYSSKTDTKRTKVKKKTNNPRF 49 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------CCcEEEEEEecCCcCCeeccceeeCCCCCCc
Confidence 67999999999987 5554 89999999984 45589999999999999
Q ss_pred eeEEEEeecCC----------------CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 106 DEHFCVPVAHS----------------VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 106 nE~f~~~~~~~----------------~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
||+|.|++... ...+.|+|+|.+..+ +++||++.|++.++..+.....|++|.
T Consensus 50 ne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~ 119 (137)
T cd08675 50 DEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119 (137)
T ss_pred ceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecC
Confidence 99999998764 356899999999886 999999999999998777789999994
No 92
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.47 E-value=1.7e-13 Score=135.45 Aligned_cols=103 Identities=25% Similarity=0.399 Sum_probs=84.6
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC----CeeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS----GATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~----~~~~~rT~vi~~s 100 (852)
..|.|.|+|++|++|+.++..+. +||||+|.+. +..+.||+++.++
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------~DPYVkv~l~~~~~~~~~~kT~vi~~t 74 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------SDSFVKCYLLPDKSKKSKQKTPVVKKS 74 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------CCCEEEEEEEcCCCCCcceeCCccCCC
Confidence 46899999999999999887665 8999999983 2346899999999
Q ss_pred CCCeeeeEEEEeecCC----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAHS----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
.||.|||+|.|.+... ...+.|+|||++.++ +++||++.+++.++..-...+.|+++
T Consensus 75 ~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 75 VNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999986432 246899999999988 99999999999998643344555544
No 93
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.47 E-value=5.8e-13 Score=126.11 Aligned_cols=116 Identities=27% Similarity=0.404 Sum_probs=92.0
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|.|+|.+|+ |...+.++. +||||+|++++...+||+++.++.||.|||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~------------------------------~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne 51 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFK------------------------------PDPYVEVTVDGQPPKKTEVSKKTSNPKWNE 51 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCC------------------------------CCeEEEEEECCcccEEeeeeCCCCCCcccc
Confidence 5899999998 544444554 899999999877569999999999999999
Q ss_pred EEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCc-----eeeeeeeccCCCCCCCCCCEEEEEE
Q 045478 108 HFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE-----VDDWFPIAGSYGKNLKPFPQLHVSM 175 (852)
Q Consensus 108 ~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~-----~~~w~~L~~~~g~~~k~~g~l~l~l 175 (852)
+|.|.+. ....+.|+|+|++..+ +++||++.+++.++..... ...|+++..+.....+..|+|.+.+
T Consensus 52 ~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 52 HFTVLVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999985 4568999999999987 8999999999999885322 3468998644311235678887764
No 94
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.47 E-value=1.3e-13 Score=130.36 Aligned_cols=108 Identities=19% Similarity=0.323 Sum_probs=86.9
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s~ 101 (852)
.|+|.|+|++|++|++++.... .||||+|++-. . ...||++++++.
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~------------------------------~dpYVKV~L~~~~k~~~KkKT~v~k~t~ 62 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLT------------------------------LSFFVKVGMFSTGGLLYKKKTRLVKSSN 62 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCC------------------------------CCcEEEEEEEECCCcceeecCccEECCC
Confidence 5889999999999998643222 79999999842 2 347999999985
Q ss_pred -CCeeeeEEEEeecCCCce--EEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 -NPFWDEHFCVPVAHSVVN--LEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 -nP~WnE~f~~~~~~~~~~--l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.++..... +.++|+|.+..+ +++||++.++.... .+...++|..++...+++
T Consensus 63 ~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ 128 (135)
T cd08692 63 GQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKV 128 (135)
T ss_pred CCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCe
Confidence 699999999999875444 478888888877 99999999999763 455689999998877765
No 95
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.46 E-value=3.8e-13 Score=126.99 Aligned_cols=89 Identities=29% Similarity=0.394 Sum_probs=77.4
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
-|+|.|+|++|++|+. +.++. +||||+|.+++. ++||+++.++.||+|
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~------------------------------~DPYVkV~~~~~-~~kT~vi~~t~nPvW 74 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTS------------------------------TDGYVKVFFGGQ-EKRTEVIWNNNNPRW 74 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCC------------------------------CCeEEEEEECCc-cccCceecCCCCCcC
Confidence 4899999999999984 55554 899999999877 589999999999999
Q ss_pred eeEEEEeecC--CCceEEEEEEecCCCC-CceeeeEeeeceecc
Q 045478 106 DEHFCVPVAH--SVVNLEFHVKDNDILG-AELIGVVQIPVEKIL 146 (852)
Q Consensus 106 nE~f~~~~~~--~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~ 146 (852)
||+|.|.... ....+.|+|||.+.++ +++||++.+++....
T Consensus 75 NE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 75 NATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 9999997433 4678899999999987 999999999998665
No 96
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.46 E-value=1.3e-13 Score=131.98 Aligned_cols=107 Identities=32% Similarity=0.461 Sum_probs=92.3
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|++.+..+. +||||++.+... ...+|+++.++.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~~T~~~~~~~ 62 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL------------------------------SDPYVKVSLLQGGKKLKKKKTSVKKGTL 62 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------CCcEEEEEEEcCCeEeeeecCcceecCC
Confidence 3789999999999998876555 899999998542 357999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|+|.+..+ +++||.+.+++.+ .|...+.|++|++..+++
T Consensus 63 ~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 63 NPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP 127 (134)
T ss_pred CCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence 999999999998764 367899999998866 8999999999998 678889999998877654
No 97
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.46 E-value=9e-13 Score=125.18 Aligned_cols=116 Identities=27% Similarity=0.464 Sum_probs=95.0
Q ss_pred EEEEEEEEecCCCCCC--CcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-----eeEEEeeeecCC
Q 045478 28 DLDLSILEAKSLPNMD--LITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-----ATVAQTRVISNC 100 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-----~~~~rT~vi~~s 100 (852)
.|+|+|++|++|++++ ..+. .||||++++.+ ....||+++.++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~~kT~~~~~~ 52 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI------------------------------VDPYVEVEIHGLPADDSAKFKTKVVKNN 52 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc------------------------------cCCEEEEEEEeCCCCCCCcEeeeeecCC
Confidence 5899999999999877 3343 89999999942 234899998877
Q ss_pred C-CCeeeeEEEEeecCCC-ceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 101 E-NPFWDEHFCVPVAHSV-VNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 101 ~-nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
. ||.|||+|.|.+..+. ..+.|+|+|.+..++++||.+.+++.++..|. .|++|.+..|.+ ...|.|.+.+++
T Consensus 53 ~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 53 GFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 6 9999999999987654 55799999988778899999999999997653 689998877764 456888888775
No 98
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.46 E-value=3.6e-13 Score=127.38 Aligned_cols=101 Identities=23% Similarity=0.384 Sum_probs=86.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCENP 103 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~nP 103 (852)
.+.|.|+|++|++|++++..+. +||||++.+.. ....||+++.+ .||
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~------------------------------~d~yVk~~llp~~~~~~kTkv~~~-~nP 63 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGA------------------------------SSWQVHLVLLPSKKQRAKTKVQRG-PNP 63 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCC------------------------------CCcEEEEEEccCCcceeecccccC-CCC
Confidence 3679999999999998886554 89999988732 34579999888 999
Q ss_pred eeeeEEEEe-ecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 104 FWDEHFCVP-VAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 104 ~WnE~f~~~-~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
+|||+|.|+ +.. ....+.|+|+|++.++ +++||++.|++.++..+.....|++|
T Consensus 64 ~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 64 VFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred cccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 999999998 544 3466899999999888 99999999999999988889999998
No 99
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.45 E-value=1.7e-13 Score=131.80 Aligned_cols=108 Identities=21% Similarity=0.345 Sum_probs=91.6
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s~ 101 (852)
.+.|.|+|++|++|+.++ .+. +||||+|.+.. . ...||+++.++.
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~------------------------------~d~yVkv~l~~~~~~~~~~kT~v~~~~~ 62 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH------------------------------TSVYVKVSLMIHNKVVKTKKTEVVDGAA 62 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC------------------------------CCeEEEEEEEECCEEeeeeecccEeCCC
Confidence 478999999999999887 554 89999999853 2 246999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|++.+..+ +++||++.|+......|+..++|..|+...+++
T Consensus 63 nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 63 SPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred CCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 999999999998642 356899999998777 899999999987777888899999998766654
No 100
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.45 E-value=3.7e-13 Score=128.58 Aligned_cols=106 Identities=27% Similarity=0.419 Sum_probs=90.9
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
-.|.|.|+|++|++|+..+..+. +||||+|.+.+ ...+||+++.++
T Consensus 11 ~~~~l~v~i~~a~nL~~~~~~~~------------------------------~dpyv~v~~~~~~~~~~~~rT~v~~~~ 60 (131)
T cd04026 11 KDNKLTVEVREAKNLIPMDPNGL------------------------------SDPYVKLKLIPDPKNETKQKTKTIKKT 60 (131)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCC------------------------------CCCcEEEEEEcCCCCCceecceeecCC
Confidence 45899999999999998776554 89999999963 356899999999
Q ss_pred CCCeeeeEEEEeecCC--CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCC
Q 045478 101 ENPFWDEHFCVPVAHS--VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSY 161 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~--~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 161 (852)
.+|.|||+|.|++... ...+.|+|+|.+..+ +++||.+.+++.++... ..+.||+|.+++
T Consensus 61 ~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 61 LNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred CCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 9999999999998754 456899999998876 89999999999999854 688999997654
No 101
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.43 E-value=3e-13 Score=129.92 Aligned_cols=108 Identities=26% Similarity=0.449 Sum_probs=87.8
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC-Ce---eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS-GA---TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~-~~---~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|+.++..+. +||||+|.+. +. ...+|++++++.
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~------------------------------~DPyV~v~l~~~~~~~~~~kT~v~~~t~ 62 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQG------------------------------SDPFVKIQLVHGLKLIKTKKTSCMRGTI 62 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCC------------------------------CCeEEEEEEEcCCcccceEcCccccCCC
Confidence 4889999999999999887766 8999999973 22 347999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|+|.+..+ +++||++.|...... +...++|+.|+.+.+++
T Consensus 63 nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 63 DPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTA 128 (135)
T ss_pred CCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCE
Confidence 999999999998542 235799999999877 999999987653222 33568999999887765
No 102
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.42 E-value=9.9e-13 Score=147.23 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhh-hcCCeEEEEEeCCCcccccccccccc
Q 045478 241 CWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKS-QEGVRVLLLIWDDKTSHDNLFIKTEG 319 (852)
Q Consensus 241 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a-~~GV~VriLvwD~~~s~~~~~~~~~~ 319 (852)
..++++++|.+||++|+|+++.|.|.. +++. ....+..|.++|.+|| +|||+||||+ +..+.....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~---~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~~------ 283 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVI---REDD---KTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDVY------ 283 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEE---eeCC---CCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCch------
Confidence 468899999999999999999776632 1110 0012358999999885 9999999997 775432100
Q ss_pred cccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCC
Q 045478 320 VMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTP 399 (852)
Q Consensus 320 ~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~ 399 (852)
.....+.|...|+++.+..+ + ..+.+|+|++|||++ +||+||.|+....+..
T Consensus 284 -----~~~~~~~L~~~G~~~~i~vr-------i-------~~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~- 335 (369)
T PHA03003 284 -----SMASVKSLQALCVGNDLSVK-------V-------FRIPNNTKLLIVDDE--------FAHITSANFDGTHYLH- 335 (369)
T ss_pred -----hhhHHHHHHHcCCCCCceEe-------e-------ecCCCCceEEEEcCC--------EEEEeccccCchhhcc-
Confidence 12445667777754210000 0 011379999999998 9999999998844321
Q ss_pred CcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhh
Q 045478 400 EHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRS 457 (852)
Q Consensus 400 ~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~ 457 (852)
..|.++ ..++|++|.+++..|.++|+..
T Consensus 336 -----------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 -----------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred -----------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122232 2467999999999999999863
No 103
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.41 E-value=9.5e-13 Score=152.89 Aligned_cols=139 Identities=18% Similarity=0.116 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
+..++.++++|.+||++|+|++..|.|+ ..+.++|+.||+|||+||||+ +..+.....
T Consensus 343 ~~i~~~~l~~I~~A~~~I~I~tpYf~pd----------------~~l~~aL~~Aa~rGV~Vrii~-p~~~D~~~~----- 400 (509)
T PRK12452 343 KSIRNTLLAVMGSAKKSIWIATPYFIPD----------------QETLTLLRLSAISGIDVRILY-PGKSDSIIS----- 400 (509)
T ss_pred HHHHHHHHHHHHHhhhEEEEECCccCCC----------------HHHHHHHHHHHHcCCEEEEEc-CCCCChHHH-----
Confidence 5789999999999999999998544331 589999999999999999998 654221100
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
........+.|.++||+++.+.. ...|+|++|||++ +|++||.|++. |.-.
T Consensus 401 ---~~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD~~--------~a~vGS~Nld~-RS~~ 451 (509)
T PRK12452 401 ---DQASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVDDK--------IATIGTANMDV-RSFE 451 (509)
T ss_pred ---HHHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEECCC--------EEEEeCcccCH-hHhh
Confidence 00123445677789999986531 1479999999998 99999999988 4311
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhh
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRST 458 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~ 458 (852)
..|.+..+..+++.|.++.+.|.++|..+.
T Consensus 452 ------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 452 ------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHST 481 (509)
T ss_pred ------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhCe
Confidence 245577888888999999999999998643
No 104
>PRK13912 nuclease NucT; Provisional
Probab=99.40 E-value=4.1e-12 Score=127.65 Aligned_cols=141 Identities=16% Similarity=0.259 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
.++++.++++|++|+++|+|+.|.+.. ..|.++|.+|++|||+|+||+ |..++...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 467889999999999999999886532 489999999999999999997 87643211
Q ss_pred ccccCCcHHHHhhhc-CCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccC
Q 045478 319 GVMQTHDEETRKFFK-HSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYD 397 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~-~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~D 397 (852)
......++. ..++++.......... ......+|.|++|||++ ++++||.|++...+.
T Consensus 88 ------~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~ 145 (177)
T PRK13912 88 ------DQSTIGYLDKYPNIKVCLLKGLKAKN--------GKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE 145 (177)
T ss_pred ------chhHHHHHHhCCCceEEEecCccccC--------cccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence 111222222 3466665432111000 01124689999999998 999999999984332
Q ss_pred CCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHHHHhhh
Q 045478 398 TPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQRWRRS 457 (852)
Q Consensus 398 t~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~ 457 (852)
. -+++.+.++.| .+.++.+.|.+.|...
T Consensus 146 ~--------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 N--------------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred c--------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 1 12567778888 5688999999999864
No 105
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.39 E-value=4e-12 Score=121.76 Aligned_cols=115 Identities=23% Similarity=0.381 Sum_probs=90.3
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe------------eEEEee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA------------TVAQTR 95 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~------------~~~rT~ 95 (852)
...|++++|++|+ ++.+++ +||||++++... ...||+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~------------------------------~DPyvki~~~~~~~~~~~~~~~~~~~~kT~ 50 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFN------------------------------PDPYVKISIQPGKRHIFPALPHHGQECRTS 50 (137)
T ss_pred EEEEEEEEeCCCC-CccCCC------------------------------CCceEEEEEECCCcccccccccccceeeee
Confidence 3578999999998 777776 999999999531 258999
Q ss_pred eecCCCCCee-eeEEEEeecCCCceEEEEEEecCCCC----CceeeeEeeeceeccCCC---ceeeeeeeccCCCCCCCC
Q 045478 96 VISNCENPFW-DEHFCVPVAHSVVNLEFHVKDNDILG----AELIGVVQIPVEKILCGN---EVDDWFPIAGSYGKNLKP 167 (852)
Q Consensus 96 vi~~s~nP~W-nE~f~~~~~~~~~~l~~~V~d~d~~~----~~~iG~~~i~l~~l~~g~---~~~~w~~L~~~~g~~~k~ 167 (852)
++.++.||.| ||+|.|.+.. ...+.|+|+|.+..+ +++||++.||+.++..+. ....|++|. +.+-....
T Consensus 51 v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~-k~~~~s~v 128 (137)
T cd08691 51 IVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG-RRTPTDHV 128 (137)
T ss_pred eEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC-cCCCCCcE
Confidence 9999999999 9999999853 457899999976432 689999999999998653 356799984 44433455
Q ss_pred CCEEEEEE
Q 045478 168 FPQLHVSM 175 (852)
Q Consensus 168 ~g~l~l~l 175 (852)
.|+|.+.+
T Consensus 129 ~G~~~l~~ 136 (137)
T cd08691 129 SGQLTFRF 136 (137)
T ss_pred EEEEEEEe
Confidence 67777654
No 106
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.39 E-value=1.2e-12 Score=125.52 Aligned_cols=91 Identities=32% Similarity=0.440 Sum_probs=80.0
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC------eeEEEeeeecCC
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG------ATVAQTRVISNC 100 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~------~~~~rT~vi~~s 100 (852)
+.|.|+|++|++|+.++.++. +||||+|++.+ ....||+++.++
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------~dPyv~v~l~~~~~~~~~~~~kT~v~~~t 65 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------SDPFVKVELLPRHLFPDVPTPKTQVKKKT 65 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------CCCEEEEEEECCCcCccccccccccCcCC
Confidence 679999999999998887665 89999999863 346899999999
Q ss_pred CCCeeeeEEEEeecCC-----CceEEEEEEecCCCC-CceeeeEeeeceeccC
Q 045478 101 ENPFWDEHFCVPVAHS-----VVNLEFHVKDNDILG-AELIGVVQIPVEKILC 147 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~-----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~ 147 (852)
.||+|||+|.|++... ...+.|+|||.+..+ +++||++.+++.++..
T Consensus 66 ~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 66 LFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred CCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999999999998752 457899999999988 9999999999999884
No 107
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.38 E-value=4.5e-12 Score=116.71 Aligned_cols=104 Identities=18% Similarity=0.345 Sum_probs=78.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCCCCe
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCENPF 104 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~nP~ 104 (852)
|.|+|++|++|+. . +||||++.++. ...+||+++.++.||+
T Consensus 1 L~V~V~~A~~L~~-----~------------------------------sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPv 45 (118)
T cd08686 1 LNVIVHSAQGFKQ-----S------------------------------ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPN 45 (118)
T ss_pred CEEEEEeCCCCCC-----C------------------------------CCCEEEEEEcCccccceeeeeeeecCCCCCc
Confidence 6899999999962 2 89999999864 3569999999999999
Q ss_pred eeeEEEEeecCCCceEEEEEEec-------CCCC-CceeeeEeeecee--ccCCCceeeeeeeccCCCCCCCCCCEEEEE
Q 045478 105 WDEHFCVPVAHSVVNLEFHVKDN-------DILG-AELIGVVQIPVEK--ILCGNEVDDWFPIAGSYGKNLKPFPQLHVS 174 (852)
Q Consensus 105 WnE~f~~~~~~~~~~l~~~V~d~-------d~~~-~~~iG~~~i~l~~--l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~ 174 (852)
|||+|.|++. ....+.+.|+|. |..+ +++||++.|.++. +........-+.| + +-+|.++
T Consensus 46 WnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~----~-----~~~~~~s 115 (118)
T cd08686 46 WNEEFEIELE-GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM----N-----GITVNLS 115 (118)
T ss_pred cceEEEEEeC-CCCEEEEEEEEcccccccccccCcccEEEEEEEEECHHHhccCCeeEEEEEe----c-----CEEEEEE
Confidence 9999999997 466889999997 3445 8999988887743 3222223333444 1 1367777
Q ss_pred EEe
Q 045478 175 MQY 177 (852)
Q Consensus 175 l~f 177 (852)
|+|
T Consensus 116 ~~~ 118 (118)
T cd08686 116 IKF 118 (118)
T ss_pred EeC
Confidence 776
No 108
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.38 E-value=9.6e-13 Score=126.64 Aligned_cols=108 Identities=22% Similarity=0.395 Sum_probs=88.6
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC---e--eEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG---A--TVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~---~--~~~rT~vi~~s 100 (852)
.|+|.|+|++|++|+.++..+. +||||+|.+.. . ...||+++.++
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~------------------------------~dpyVkv~llp~~~~~~~~~kT~v~~~t 63 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA------------------------------PDTYVKLTLLNSDGQEISKSKTSIRRGQ 63 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC------------------------------CCeeEEEEEEeCCCcceeeccceeecCC
Confidence 5889999999999998877665 89999999842 2 23699999999
Q ss_pred CCCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 101 ENPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
.||+|||+|.|++.. ....+.|+|+|.+.++ +++||++.|++.... .+..++|+.++...+++
T Consensus 64 ~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 64 PDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQ 130 (138)
T ss_pred CCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCE
Confidence 999999999999875 3357899999998877 999999999886432 23467899998776654
No 109
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.38 E-value=9.2e-13 Score=167.72 Aligned_cols=119 Identities=19% Similarity=0.383 Sum_probs=102.2
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
+.|.|.|+|++|++|. +.++. +||||++.+++....||++++++.||+
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~------------------------------sdPyv~l~~g~~~~~kTkvvk~~~nP~ 2025 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGN------------------------------TNAFCKLTLGNGPPRQTKVVSHSSSPE 2025 (2102)
T ss_pred CCcceEEEEeeccccc--cccCC------------------------------CCCeEEEEECCCCcccccccCCCCCCC
Confidence 4799999999999998 33444 899999999976446999999999999
Q ss_pred eeeEEEEeecCCC--ceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCE---EEEEEEeee
Q 045478 105 WDEHFCVPVAHSV--VNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQ---LHVSMQYKP 179 (852)
Q Consensus 105 WnE~f~~~~~~~~--~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~---l~l~l~f~~ 179 (852)
|||.|+|.+..+. ..++|+|||+|.++++.||.+.|++.++..++...+||+|.+ +| ++.|+ |++.++|.+
T Consensus 2026 Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~---~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2026 WKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ES---NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-cc---ccCCCcceEEEEEEecC
Confidence 9999998887765 568999999999998899999999999999999999999953 33 23455 999999875
No 110
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.37 E-value=2.2e-12 Score=121.30 Aligned_cols=97 Identities=25% Similarity=0.404 Sum_probs=83.5
Q ss_pred EEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe------eEEEeeeecCCCCCee
Q 045478 32 SILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA------TVAQTRVISNCENPFW 105 (852)
Q Consensus 32 ~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~------~~~rT~vi~~s~nP~W 105 (852)
-.++|++|++++.++. +||||+|.+.+. .++||+++.++.||+|
T Consensus 5 ~~i~a~~L~~~d~~g~------------------------------~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~w 54 (120)
T cd04048 5 LSISCRNLLDKDVLSK------------------------------SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDF 54 (120)
T ss_pred EEEEccCCCCCCCCCC------------------------------CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCc
Confidence 4588999999988776 899999999654 3689999999999999
Q ss_pred eeEEEEeecC-CCceEEEEEEecCC----CC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 106 DEHFCVPVAH-SVVNLEFHVKDNDI----LG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 106 nE~f~~~~~~-~~~~l~~~V~d~d~----~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
||+|.|.+.. ....+.|+|+|++. .+ +++||++.+++.++..+.....|++|.
T Consensus 55 ne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 55 VTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred eEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999998543 45678999999986 55 899999999999999887788899983
No 111
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=5.6e-12 Score=119.23 Aligned_cols=89 Identities=26% Similarity=0.388 Sum_probs=78.3
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCee-EEEeeeecCCCCCeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGAT-VAQTRVISNCENPFWD 106 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~-~~rT~vi~~s~nP~Wn 106 (852)
.|+|+|++|++|++++..+. +||||+|.+++.. ..||+++.++.||.||
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~------------------------------~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wn 50 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGK------------------------------SDPYLKIKLGKKKINDRDNYIPNTLNPVFG 50 (124)
T ss_pred CEEEEEEECcCCCCCCCCCC------------------------------CCcEEEEEECCeeccceeeEEECCCCCccc
Confidence 37899999999999987766 8999999998764 3689999999999999
Q ss_pred eEEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceecc
Q 045478 107 EHFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKIL 146 (852)
Q Consensus 107 E~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~ 146 (852)
|+|.|.+..+ ...+.|+|+|.+.++ +++||++.+++++..
T Consensus 51 e~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 51 KMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred eEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 9999998654 457899999999987 999999999998765
No 112
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=7.8e-12 Score=141.53 Aligned_cols=128 Identities=27% Similarity=0.319 Sum_probs=106.7
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe--eEEEeeeecCCC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA--TVAQTRVISNCE 101 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~--~~~rT~vi~~s~ 101 (852)
.-+..|.|+|++|++|+.++..+. +||||++++... ...+|++.+++.
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~------------------------------sdpyVK~~llPdk~~k~kT~v~r~tl 213 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGT------------------------------SDPYVKVYLLPDKKGKFKTRVHRKTL 213 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCC------------------------------CCCeeEEEEcCCCCCcceeeeeecCc
Confidence 345779999999999999984333 899999999643 457999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
||.|||+|.|.+.+. ...+.|+|+|.|.++ +++||.+.+++..+......+.|.++........+..|+|.++++|
T Consensus 214 nP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y 293 (421)
T KOG1028|consen 214 NPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCY 293 (421)
T ss_pred CCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEe
Confidence 999999999997763 567899999999999 9999999999998887776888999965433333344899999999
Q ss_pred eecC
Q 045478 178 KPIG 181 (852)
Q Consensus 178 ~~~~ 181 (852)
.|..
T Consensus 294 ~p~~ 297 (421)
T KOG1028|consen 294 LPTA 297 (421)
T ss_pred ecCC
Confidence 9984
No 113
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.35 E-value=5.9e-12 Score=118.88 Aligned_cols=101 Identities=27% Similarity=0.353 Sum_probs=82.9
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
.+.|.|+|++|++|++.+..+. +||||++.+.. ..+.||+++.++.
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~------------------------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~ 63 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGL------------------------------SDPYVKLNLLPGASKATKLRTKTVHKTR 63 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------CCceEEEEEecCCCCCCceeeeeecCCC
Confidence 3689999999999998876655 89999999842 2468999999999
Q ss_pred CCeeeeEEEEeecCC----CceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeee
Q 045478 102 NPFWDEHFCVPVAHS----VVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFP 156 (852)
Q Consensus 102 nP~WnE~f~~~~~~~----~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~ 156 (852)
||.|||+|.|..... ...+.|+|+|.+..++++||.+.+++.++..++..+-|+.
T Consensus 64 ~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 64 NPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 999999999963322 3578999999887788999999999999997765555543
No 114
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.33 E-value=5.7e-13 Score=142.15 Aligned_cols=104 Identities=28% Similarity=0.430 Sum_probs=92.2
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCCC
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCEN 102 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~n 102 (852)
..|+|+|.+|+||-+||..+. |||||.+.+-. ....+|++++.++|
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGl------------------------------SDPYvk~kliPD~~~~sKqKTkTik~~LN 229 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGL------------------------------SDPYVKLKLIPDPKNESKQKTKTIKATLN 229 (683)
T ss_pred ceEEEEehhhccccccCCCCC------------------------------CCcceeEEeccCCcchhhhhhhhhhhhcC
Confidence 459999999999999999887 99999999842 34579999999999
Q ss_pred CeeeeEEEEeecCCC--ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCC
Q 045478 103 PFWDEHFCVPVAHSV--VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSY 161 (852)
Q Consensus 103 P~WnE~f~~~~~~~~--~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 161 (852)
|+|||+|+|.+.+.. ..+.++|||+|..+ ++|+|...+.+++|+ ..++++||.|+++.
T Consensus 230 P~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsqe 290 (683)
T KOG0696|consen 230 PVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQE 290 (683)
T ss_pred ccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhhh
Confidence 999999999998754 66899999999988 999999999999998 56789999998764
No 115
>PRK13912 nuclease NucT; Provisional
Probab=99.32 E-value=5e-12 Score=127.07 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchh
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAA 624 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~ 624 (852)
..+...++++|++|++.|+|+. |+++ ...+..+|.++. ++||+|+|+++........ .
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~-----------------~~~i~~aL~~Aa--~RGV~VrIlld~~~~~~~~-~- 89 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFT-----------------HKDIAKALKSAA--KRGVKISIIYDYESNHNND-Q- 89 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEc-----------------hHHHHHHHHHHH--HCCCEEEEEEeCccccCcc-h-
Confidence 4567889999999999999996 5552 124666666663 4889999999964321100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEE
Q 045478 625 VQEILYWQGQTMSMMYKIVAQALQD-NGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVH 703 (852)
Q Consensus 625 ~~~~~~~~~~t~~~~~~~i~~~L~~-~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
.+ ...|.+ .+++.. .+..+... . . ....++|
T Consensus 90 ---------~~--------~~~l~~~~~~~~~-------~~~~~~~~--~---~-------------------~~~~~~H 121 (177)
T PRK13912 90 ---------ST--------IGYLDKYPNIKVC-------LLKGLKAK--N---G-------------------KYYGIMH 121 (177)
T ss_pred ---------hH--------HHHHHhCCCceEE-------EecCcccc--C---c-------------------ccccccc
Confidence 00 011111 122210 00000000 0 0 0013789
Q ss_pred eeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 704 AKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 704 SKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
+|+||||++++++||+||+.+|+..| .|+.+++.||..
T Consensus 122 ~K~~viD~~~~~iGS~N~t~~s~~~N--~E~~lii~d~~~ 159 (177)
T PRK13912 122 QKVAIIDDKIVVLGSANWSKNAFENN--YEVLLITDDTET 159 (177)
T ss_pred eeEEEEcCCEEEEeCCCCChhHhccC--CceEEEECCHHH
Confidence 99999999999999999999999855 999999988754
No 116
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.31 E-value=4e-12 Score=143.33 Aligned_cols=131 Identities=24% Similarity=0.337 Sum_probs=114.1
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
...|.|+|.+|+||+..+..+. +||||+|.+++..+.||.++.+++.|.|
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~------------------------------~D~yC~v~lD~E~v~RT~tv~ksL~PF~ 53 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGM------------------------------RDCYCTVNLDQEEVCRTATVEKSLCPFF 53 (800)
T ss_pred ccceeEEEeecccCCCCCCCCC------------------------------cCcceEEeecchhhhhhhhhhhhcCCcc
Confidence 4568999999999999887766 8999999999999999999999999999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeecCCcc
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIP 184 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~~~~ 184 (852)
.|.|+|+++.....+.|-|+|.| ++ |+.||++.|.-++|..-...+.||.|. +-.-....+|+|++++++++.....
T Consensus 54 gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~-~VD~dsEVQG~v~l~l~~~e~~~~~ 131 (800)
T KOG2059|consen 54 GEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQ-PVDPDSEVQGKVHLELALTEAIQSS 131 (800)
T ss_pred ccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceecc-ccCCChhhceeEEEEEEeccccCCC
Confidence 99999999998899999999999 66 999999999999998777789999993 3222346789999999999987654
Q ss_pred cccC
Q 045478 185 LYKD 188 (852)
Q Consensus 185 ~~~~ 188 (852)
.-..
T Consensus 132 ~~~c 135 (800)
T KOG2059|consen 132 GLVC 135 (800)
T ss_pred cchh
Confidence 3333
No 117
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.27 E-value=2.9e-11 Score=121.42 Aligned_cols=131 Identities=23% Similarity=0.347 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 045478 544 DKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSA 623 (852)
Q Consensus 544 e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~ 623 (852)
..++.+.++++|.+|++.|+|+++||.+.. ......+...|.++.+ +|++|+|++...+.... .
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~--rGv~V~il~~~~~~~~~--~ 82 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAAR--RGVKVRILVDEWSNTDL--K 82 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHH--CCCEEEEEEcccccCCc--h
Confidence 467899999999999999999999998421 0002356677777754 58999999996543211 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeE
Q 045478 624 AVQEILYWQGQTMSMMYKIVAQALQDN---GLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMI 700 (852)
Q Consensus 624 ~~~~~~~~~~~t~~~~~~~i~~~L~~~---Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 700 (852)
. .. .....|.+. |++ ++.+..... ...
T Consensus 83 -------~-~~-------~~~~~l~~~~~~~i~----------~~~~~~~~~-------------------------~~~ 112 (176)
T cd00138 83 -------I-SS-------AYLDSLRALLDIGVR----------VFLIRTDKT-------------------------YGG 112 (176)
T ss_pred -------H-HH-------HHHHHHHHhhcCceE----------EEEEcCCcc-------------------------ccc
Confidence 0 01 113444443 443 222111100 124
Q ss_pred EEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCc
Q 045478 701 YVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPH 742 (852)
Q Consensus 701 yvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~ 742 (852)
.+|+|+||||++.+++||+||+.+|+. .+.|+++.+.+++
T Consensus 113 ~~H~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 113 VLHTKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred ceeeeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 899999999999999999999999998 4599999998874
No 118
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.20 E-value=9.7e-11 Score=108.26 Aligned_cols=87 Identities=26% Similarity=0.472 Sum_probs=73.7
Q ss_pred EEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe-----eEEEeeeecCCCCCee
Q 045478 31 LSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA-----TVAQTRVISNCENPFW 105 (852)
Q Consensus 31 v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~-----~~~rT~vi~~s~nP~W 105 (852)
+-+++|++|+.++.++. +||||+|++.+. ..+||+++.++.||.|
T Consensus 4 ~~~i~a~~L~~~d~~~~------------------------------~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~W 53 (110)
T cd04047 4 ELQFSGKKLDKKDFFGK------------------------------SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVW 53 (110)
T ss_pred EEEEEeCCCCCCCCCCC------------------------------CCeeEEEEEECCCCCEEEEEeeeEeccCCCCce
Confidence 34569999999988776 999999998542 4689999999999999
Q ss_pred eeEEEEeecC-----CCceEEEEEEecCCCC-CceeeeEeeeceeccCC
Q 045478 106 DEHFCVPVAH-----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG 148 (852)
Q Consensus 106 nE~f~~~~~~-----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g 148 (852)
| .|.|++.. ....+.|+|+|++..+ +++||++.+++.++..+
T Consensus 54 n-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 54 K-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred E-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 9 78888643 2567899999999987 89999999999999843
No 119
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.2e-11 Score=133.56 Aligned_cols=123 Identities=27% Similarity=0.450 Sum_probs=98.8
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
..+.++|++|++|-..|..|+ |||||++.++..+ .||++|...+||+||
T Consensus 295 akitltvlcaqgl~akdktg~------------------------------sdpyvt~qv~ktk-rrtrti~~~lnpvw~ 343 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGK------------------------------SDPYVTAQVGKTK-RRTRTIHQELNPVWN 343 (1283)
T ss_pred eeeEEeeeecccceecccCCC------------------------------CCCcEEEeecccc-hhhHhhhhccchhhh
Confidence 347899999999999998887 9999999999887 799999999999999
Q ss_pred eEEEEeecCCCceEEEEEEecCCC------------CCceeeeEeeeceeccCCCceeeeeeeccCCCCC-CCCCCEEEE
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDIL------------GAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN-LKPFPQLHV 173 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~------------~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~-~k~~g~l~l 173 (852)
|.|+|.|.++...+.+.|||+|.. +|+|+|+..|.+..+. | +.+-||.|.....+. ..+...|++
T Consensus 344 ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynlekrtdksavsgairlhi 421 (1283)
T KOG1011|consen 344 EKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLEKRTDKSAVSGAIRLHI 421 (1283)
T ss_pred hheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchhhccchhhccceEEEEE
Confidence 999999999999999999997632 4899999999998875 4 478899995443333 222334555
Q ss_pred EEEeeecCC
Q 045478 174 SMQYKPIGQ 182 (852)
Q Consensus 174 ~l~f~~~~~ 182 (852)
++.....++
T Consensus 422 sveikgeek 430 (1283)
T KOG1011|consen 422 SVEIKGEEK 430 (1283)
T ss_pred EEEEcCccc
Confidence 555554443
No 120
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.17 E-value=8.1e-11 Score=111.29 Aligned_cols=113 Identities=24% Similarity=0.389 Sum_probs=71.3
Q ss_pred HHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHH
Q 045478 551 YVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILY 630 (852)
Q Consensus 551 yl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~ 630 (852)
++++|.+|++.|+|..+||... .+...+..+ ..+|++|+|++...... .....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~--~~~gv~v~ii~~~~~~~-~~~~~------ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDA--AKRGVKVRIIVDSNQDD-SEAIN------ 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHH--HHTT-EEEEEEECGGGH-HCCCS------
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHH--HHCCCeEEEEECCCccc-cchhh------
Confidence 3679999999999999999421 234445444 34779999999852210 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEc
Q 045478 631 WQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVD 710 (852)
Q Consensus 631 ~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 710 (852)
. .....+.+.+...|++++ .++|+|++|+|
T Consensus 54 --~----~~~~~~~~~~~~~~i~v~--------------------------------------------~~~H~K~~i~d 83 (126)
T PF13091_consen 54 --L----ASLKELRELLKNAGIEVR--------------------------------------------NRLHAKFYIID 83 (126)
T ss_dssp --H----HHHHHHHHHHHHTTHCEE--------------------------------------------S-B--EEEEET
T ss_pred --h----HHHHHHHhhhccceEEEe--------------------------------------------cCCCcceEEec
Confidence 0 001122344467776530 18999999999
Q ss_pred ceeEEecCcCcccCCCCCCCCceeEEEEecCc
Q 045478 711 DEYVIMGSANINQRSLEGSRDTEIAMGAYQPH 742 (852)
Q Consensus 711 D~~~iIGSANln~RSm~~n~DsEi~v~i~d~~ 742 (852)
|+++++||+||+.+||. ++.|+++.+.++.
T Consensus 84 ~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 84 DKVAIIGSANLTSSSFR--RNYELGVIIDDPE 113 (126)
T ss_dssp TTEEEEES--CSCCCSC--TSEEEEEEEECHH
T ss_pred CccEEEcCCCCCcchhc--CCcceEEEEECHH
Confidence 99999999999999997 4599999998874
No 121
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.15 E-value=2.9e-10 Score=107.53 Aligned_cols=124 Identities=19% Similarity=0.367 Sum_probs=84.5
Q ss_pred HHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccc-C
Q 045478 245 ICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQ-T 323 (852)
Q Consensus 245 l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~-~ 323 (852)
|.++|++|+++|+|+.+.+.+ ..|.++|..++++||+|+|++ +...... +.+. .
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~-----------------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~-------~~~~~~ 55 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITD-----------------PDIIKALLDAAKRGVKVRIIV-DSNQDDS-------EAINLA 55 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-S-----------------CHHHHHHHHHHHTT-EEEEEE-ECGGGHH-------CCCSHH
T ss_pred CHHHHhccCCEEEEEEEecCc-----------------HHHHHHHHHHHHCCCeEEEEE-CCCcccc-------chhhhH
Confidence 578999999999999887621 488999999999999999998 5421100 0000 0
Q ss_pred CcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCC
Q 045478 324 HDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRL 403 (852)
Q Consensus 324 ~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~ 403 (852)
......+.+...|+++. .+.|.|++|||++ ++++|+.|++...|
T Consensus 56 ~~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~------- 99 (126)
T PF13091_consen 56 SLKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSF------- 99 (126)
T ss_dssp HHHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCS-------
T ss_pred HHHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchh-------
Confidence 01233444466777765 1569999999998 99999999998544
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChH-HHHHHHHHHHHH
Q 045478 404 FGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPA-AYDILINFEQRW 454 (852)
Q Consensus 404 ~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpa-a~dl~~~F~~rW 454 (852)
...++..+.+++|. +..+.+.|.+.|
T Consensus 100 -------------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 -------------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -------------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -------------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 13458999999995 899999999989
No 122
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.14 E-value=2.9e-10 Score=132.05 Aligned_cols=138 Identities=18% Similarity=0.128 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
+.+.+.+.++|.+||++|+|++..|-| ...+.++|+.||+|||+|+||+ +........
T Consensus 317 ~~~~~~~~~~I~~A~~~I~I~tpYfip----------------~~~i~~aL~~Aa~rGV~Vril~-p~~~d~~~~----- 374 (483)
T PRK01642 317 ETIHQFLLTAIYSARERLWITTPYFVP----------------DEDLLAALKTAALRGVDVRIII-PSKNDSLLV----- 374 (483)
T ss_pred hHHHHHHHHHHHHhccEEEEEcCCcCC----------------CHHHHHHHHHHHHcCCEEEEEe-CCCCCcHHH-----
Confidence 567788999999999999998743322 1589999999999999999998 654221110
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
........+.|.+.||+++.+.. ...|.|++|||++ ++++|+.|++...+.
T Consensus 375 ---~~~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD~~--------~~~vGS~N~d~rS~~- 425 (483)
T PRK01642 375 ---FWASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVDDE--------LALVGTVNLDMRSFW- 425 (483)
T ss_pred ---HHHHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEECCC--------EEEeeCCcCCHhHHh-
Confidence 00123345567788999985421 1469999999998 999999999772221
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHHHHhhhh
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQRWRRST 458 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~~ 458 (852)
--+++.+.+.+| .+.++.+.|.++|..+.
T Consensus 426 -------------------------------~N~E~~~~i~d~~~~~~l~~~f~~d~~~s~ 455 (483)
T PRK01642 426 -------------------------------LNFEITLVIDDTGFAADLAAMQEDYFARSR 455 (483)
T ss_pred -------------------------------hhhcceEEEECHHHHHHHHHHHHHHHHhCe
Confidence 113678889998 58899999999997643
No 123
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.14 E-value=1.2e-10 Score=101.39 Aligned_cols=81 Identities=40% Similarity=0.688 Sum_probs=70.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe--eEEEeeeecCCCCCeee
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA--TVAQTRVISNCENPFWD 106 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~--~~~rT~vi~~s~nP~Wn 106 (852)
|+|+|++|++|+..+..+. .+|||++.+.+. ...+|+++.++.+|.|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~ 50 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------PDPYVRVSVNGSESTKYKTKVKKNTSNPVWN 50 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------BEEEEEEEEETTTCEEEEECCBSSBSSEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------ccccceeecceeeeeeeeeeeeeccccceee
Confidence 7899999999998775554 899999999874 34999999999999999
Q ss_pred eEEEEeecC-CCceEEEEEEecCCCC-CceeeeEe
Q 045478 107 EHFCVPVAH-SVVNLEFHVKDNDILG-AELIGVVQ 139 (852)
Q Consensus 107 E~f~~~~~~-~~~~l~~~V~d~d~~~-~~~iG~~~ 139 (852)
|+|.|++.. ....+.|+|+|.+..+ +++||+++
T Consensus 51 e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 51 EEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 999999554 4566999999999998 99999974
No 124
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.06 E-value=1e-09 Score=98.23 Aligned_cols=93 Identities=38% Similarity=0.684 Sum_probs=80.2
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe--eEEEeeeecCCCCCee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA--TVAQTRVISNCENPFW 105 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~--~~~rT~vi~~s~nP~W 105 (852)
+|.|.|++|++|........ .+|||++.+... ..++|+++.++.||.|
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~------------------------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w 50 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGK------------------------------SDPYVKVSLDGDPKEKKKTKVVKNTLNPVW 50 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------CCceEEEEEeCCccceEeeeEecCCCCCcc
Confidence 37899999999986554333 799999999876 5699999999999999
Q ss_pred eeEEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceeccCCCc
Q 045478 106 DEHFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE 150 (852)
Q Consensus 106 nE~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~ 150 (852)
||.|.|++... ...+.|+|+|.+..+ +.++|.+.+++.++..+..
T Consensus 51 ~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 51 NETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred cceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 99999999887 788899999998877 8999999999999886654
No 125
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.05 E-value=9.6e-10 Score=97.86 Aligned_cols=99 Identities=37% Similarity=0.721 Sum_probs=84.2
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|.|++|++|........ .+|||++.+.+...++|+++.++.||.|+|.
T Consensus 1 l~v~i~~~~~l~~~~~~~~------------------------------~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~ 50 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGK------------------------------SDPYVKVSLGGKQKFKTKVVKNTLNPVWNET 50 (102)
T ss_pred CEEEEEeeeCCCCcCCCCC------------------------------CCcEEEEEeccCceEecceeCCCCCCcccce
Confidence 5789999999986543332 8999999999855589999999999999999
Q ss_pred EEEeecC-CCceEEEEEEecCCCC-CceeeeEeeeceecc-CCCceeeeeee
Q 045478 109 FCVPVAH-SVVNLEFHVKDNDILG-AELIGVVQIPVEKIL-CGNEVDDWFPI 157 (852)
Q Consensus 109 f~~~~~~-~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~-~g~~~~~w~~L 157 (852)
|.|++.. ....+.|+|++.+..+ ..+||.+.+++.++. .+.....|++|
T Consensus 51 ~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 51 FEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 9999987 6678899999998877 899999999999998 66666778764
No 126
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.01 E-value=2.6e-09 Score=120.84 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
..+...+.++|.+|+++|+|+.-.|.| +..|.++|+.||+|||+|+||+ +..+....
T Consensus 205 ~~i~~~~~~~i~~A~~~I~I~tpYf~p----------------~~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~------ 261 (411)
T PRK11263 205 DDIERHYLKALRQARREVIIANAYFFP----------------GYRLLRALRNAARRGVRVRLIL-QGEPDMPI------ 261 (411)
T ss_pred HHHHHHHHHHHHHhceEEEEEecCcCC----------------CHHHHHHHHHHHHCCCEEEEEe-CCCCCcHH------
Confidence 456778899999999999998632322 1589999999999999999998 65432211
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
+....+.....|.++||+++.+.. ...|.|++|||++ +++||+.|++. |...
T Consensus 262 --~~~a~~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~~--------~~~vGS~Nld~-rS~~ 313 (411)
T PRK11263 262 --VRVGARLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDDH--------WATVGSSNLDP-LSLS 313 (411)
T ss_pred --HHHHHHHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECCC--------EEEEeCCcCCH-HHhh
Confidence 000123456677889999875421 1469999999998 99999999987 5321
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChH-HHHHHHHHHHHHh
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPA-AYDILINFEQRWR 455 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpa-a~dl~~~F~~rW~ 455 (852)
--.++.+.|.+|. +..+.+.|.+.+.
T Consensus 314 -------------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 314 -------------------------------LNLEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred -------------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 1125678888885 6888899999986
No 127
>PLN02223 phosphoinositide phospholipase C
Probab=98.96 E-value=6.1e-09 Score=118.26 Aligned_cols=124 Identities=20% Similarity=0.355 Sum_probs=94.3
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s 100 (852)
...+|.|+|+++++++. +. .++.+ ..+ ..||||+|.+.+. ...+|++..|+
T Consensus 407 ~~~~L~V~Visgq~~~~-~~-~k~~~----------------------~~s-~~DpyV~VeI~Gvp~D~~~~kT~v~nNg 461 (537)
T PLN02223 407 VVKILKVKIYMGDGWIV-DF-KKRIG----------------------RLS-KPDLYVRISIAGVPHDEKIMKTTVKNNE 461 (537)
T ss_pred cceEEEEEEEEcccccC-Cc-ccccC----------------------CCC-CCCeEEEEEEeeccCCcceeEEEeCCCC
Confidence 36789999999999861 11 00000 000 1799999998652 34688888889
Q ss_pred CCCeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 101 ENPFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
.||.|||+|.|++..+. .-+.|+|+|+|..+ +++||+..+|+..|..|. ++.+|.+..|.+++. .+|-++++|
T Consensus 462 ~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~-~~Ll~~f~~ 536 (537)
T PLN02223 462 WKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSS-TMLLTRFKW 536 (537)
T ss_pred cCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCC-ceEEEEEEe
Confidence 99999999999987665 45699999999876 899999999999999886 678999999987643 566665554
No 128
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.94 E-value=3.8e-09 Score=126.14 Aligned_cols=134 Identities=20% Similarity=0.321 Sum_probs=105.2
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
.=|+|.|+|.+|++|...+.+-. .+.|||+++...+...+||++.+++.||+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~----------------------------~~vDpyit~~~~~r~~gkT~v~~nt~nPv 485 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTIN----------------------------GTVDPYITVTFSDRVIGKTRVKKNTLNPV 485 (1227)
T ss_pred eeEEEEEEEeeccCccccccccc----------------------------CCCCceEEEEeccccCCccceeeccCCcc
Confidence 35899999999999987663211 12899999999888889999999999999
Q ss_pred eeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceee-eeeeccCCCCCCCCCCEEEEEEEeeecCC
Q 045478 105 WDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDD-WFPIAGSYGKNLKPFPQLHVSMQYKPIGQ 182 (852)
Q Consensus 105 WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~-w~~L~~~~g~~~k~~g~l~l~l~f~~~~~ 182 (852)
|||+|.+.+..-...+.++|+|.+... |.++|+++++|..|.......+ -+.++ ... +.-|+|...++|+|+..
T Consensus 486 wNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~---k~vGrL~yDl~ffp~~e 561 (1227)
T COG5038 486 WNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNT---KNVGRLTYDLRFFPVIE 561 (1227)
T ss_pred ccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccC---ccceEEEEeeeeecccC
Confidence 999999999888889999999966555 9999999999988875443333 33332 222 56799999999999976
Q ss_pred cccccCCC
Q 045478 183 IPLYKDGV 190 (852)
Q Consensus 183 ~~~~~~gv 190 (852)
+..-..|.
T Consensus 562 ~k~~~~~s 569 (1227)
T COG5038 562 DKKELKGS 569 (1227)
T ss_pred Cccccccc
Confidence 54433333
No 129
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=3e-09 Score=120.63 Aligned_cols=108 Identities=33% Similarity=0.514 Sum_probs=90.2
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
+|.|+|.|++|++|+.++..+. +||||++.+-. ....||.+.+++.
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~------------------------------~d~~Vk~~l~~~~~~~~kkkT~~~~~~~ 346 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL------------------------------SDPYVKVTLLDGDKRLSKKKTSVKKKTL 346 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC------------------------------CCccEEEEEecCCceeeeeeeecccCCC
Confidence 5999999999999999987766 89999999842 2457999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNL 165 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~ 165 (852)
||+|||+|.|.+... ...+.++|+|.+.++ +++||.+.+.... .|....+|..++...+++.
T Consensus 347 npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 347 NPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred CCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 999999999987742 345799999999999 8899988877664 5666788999988777653
No 130
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.87 E-value=7.2e-09 Score=92.26 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=72.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|..|+++...+... +.+ .++|||+|.+++...+||++ +.||.|||.
T Consensus 1 L~I~V~~~RdvdH~~~~~-----~~~----------------------~~etyV~IKved~~kaRTr~---srnd~WnE~ 50 (109)
T cd08689 1 LTITITSARDVDHIASPR-----FSK----------------------RPETYVSIKVEDVERARTKP---SRNDRWNED 50 (109)
T ss_pred CEEEEEEEecCccccchh-----hcc----------------------CCCcEEEEEECCEEEEeccC---CCCCcccce
Confidence 689999999998766311 110 17999999999997799998 589999999
Q ss_pred EEEeecCCCceEEEEEEecCCCCCceeeeEeeeceecc
Q 045478 109 FCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKIL 146 (852)
Q Consensus 109 f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~ 146 (852)
|.|++ +-..+++++|+|......-.||...|++.+|.
T Consensus 51 F~i~V-dk~nEiel~VyDk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 51 FEIPV-EKNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred EEEEe-cCCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence 99999 46889999999986655778999999999887
No 131
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.86 E-value=5.5e-09 Score=124.73 Aligned_cols=124 Identities=25% Similarity=0.421 Sum_probs=101.8
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
-.|.|+|.+.+|.||++.|..+. +||||.+.+.+..+++|+++++++||+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~------------------------------sDpfv~~~ln~k~vyktkv~KktlNPv 1087 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGY------------------------------SDPFVKLFLNEKSVYKTKVVKKTLNPV 1087 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCC------------------------------CCceEEEEecceecccccchhccCCCC
Confidence 37999999999999999999887 999999999999899999999999999
Q ss_pred eeeEEEEeecCCCce-EEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 105 WDEHFCVPVAHSVVN-LEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 105 WnE~f~~~~~~~~~~-l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
|||+|.+++.....+ +++.|+|+|.-. +++||.+.|+|..+..|.....-.+| +.+. ....+|.++....|.+.
T Consensus 1088 wNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-dgk~-~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1088 WNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-DGKT-FIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred ccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-cCcc-eEecccEeecceecchh
Confidence 999999999865544 599999999877 89999999999999987766555565 3222 23445666655555443
No 132
>PLN02952 phosphoinositide phospholipase C
Probab=98.85 E-value=1.9e-08 Score=116.76 Aligned_cols=123 Identities=18% Similarity=0.323 Sum_probs=92.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCC-cCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSM-ITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
..+|.|+|++|.+++.. .... +.+. ...||||+|.+-+ ....||+++.++
T Consensus 469 ~~~L~V~VisGq~l~lp-~~~~------------------------~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN 523 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLD-FSHT------------------------HFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN 523 (599)
T ss_pred cceEEEEEEECcccCCC-Cccc------------------------cCCccCCCCceEEEEEeccCCCCcceeeeeccCC
Confidence 57899999999998531 1111 0000 1159999999854 234699999999
Q ss_pred CCCeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 101 ENPFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
.||+|||+|.|++..+. .-+.|+|+|+|..+ ++++|++.||+..|..|. +|++|.+..|++.. ...|-+.++|
T Consensus 524 ~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 524 WYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred CCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence 99999999999877653 45689999998877 899999999999999987 59999988887653 3444444443
No 133
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.84 E-value=7.5e-10 Score=74.55 Aligned_cols=27 Identities=59% Similarity=0.986 Sum_probs=18.5
Q ss_pred cccCccceEEecCCCCCCCCceEEEEcccCCCCCc
Q 045478 361 LFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGR 395 (852)
Q Consensus 361 ~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r 395 (852)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 36999999999998 9999999999853
No 134
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.80 E-value=2.7e-08 Score=94.27 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=76.5
Q ss_pred EEEEEEEecCCCCCCC--cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCC--
Q 045478 29 LDLSILEAKSLPNMDL--ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCEN-- 102 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~n-- 102 (852)
|+|.|.+|++++..+. .+. . .+||||++.+.+ ....+|.|..++.|
T Consensus 2 LRViIw~~~~v~~~~~~~~g~----~------------------------~sD~yVK~~L~~~~~~kqkTDVHyrslnG~ 53 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGE----K------------------------MSDIYVKGWLDGLEEDKQKTDVHYRSLDGE 53 (133)
T ss_pred EEEEEEECcCCcccccccCCc----c------------------------ccCeEEEEEEccCcccccccceEEecCCCC
Confidence 7899999999765543 221 0 189999999976 45689999999999
Q ss_pred CeeeeEEEEeecCC------------------------CceEEEEEEecCCCC-CceeeeEeeeceeccCCCc
Q 045478 103 PFWDEHFCVPVAHS------------------------VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE 150 (852)
Q Consensus 103 P~WnE~f~~~~~~~------------------------~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~ 150 (852)
|.||+.|.|++..+ ...+.++|||.|.++ +++||.+.+++..+..+..
T Consensus 54 ~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 54 GNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 99999999987651 245699999999998 9999999999998886643
No 135
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.76 E-value=4.6e-08 Score=113.38 Aligned_cols=125 Identities=18% Similarity=0.298 Sum_probs=94.0
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
...+|.|+|+.+.+++....... +. .-+ ..||||+|.+-+ ....||++..|+
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~-----~~------------------~~s-~~DpyV~Vei~Gvp~D~~~~kT~v~~n~ 522 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTH-----FD------------------SYS-PPDFFVRVGIAGAPVDEVMEKTKIEYDT 522 (598)
T ss_pred cCcEEEEEEEEccCccCCCcccc-----CC------------------CCC-CCCceEEEEEEECCCCCcccceeccCCC
Confidence 35789999999998753110000 00 000 169999999854 234699999999
Q ss_pred CCCeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 101 ENPFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
.||.|||+|.|++..+. .-|.|+|+|+|..+ ++++|+..||+..|..|- +..+|.+..|.++.. ..|-++++|
T Consensus 523 ~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~-~~Ll~~f~~ 597 (598)
T PLN02230 523 WTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSS-TRLLMRFEF 597 (598)
T ss_pred CCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCC-CeeEEEEEe
Confidence 99999999999977654 56699999999866 999999999999999986 468999999987644 566666655
No 136
>PRK05443 polyphosphate kinase; Provisional
Probab=98.76 E-value=3.4e-08 Score=117.55 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=87.1
Q ss_pred HHHHHHHHhccc-----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 045478 549 SAYVKAIRSAQH-----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSA 623 (852)
Q Consensus 549 ~ayl~aI~~Ak~-----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~ 623 (852)
+..++.|++|.+ .|.|+-..+.+. ..+..++..| +.+|++|+|+++..+.
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~iv~aL~~A--a~~Gk~V~vlve~kar------ 405 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKD-----------------SPIVDALIEA--AENGKQVTVLVELKAR------ 405 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCC-----------------HHHHHHHHHH--HHcCCEEEEEEccCcc------
Confidence 367889999999 899876444421 2355556665 3477999999996431
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEE
Q 045478 624 AVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVH 703 (852)
Q Consensus 624 ~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
+..++... ..+.|.++|+++.| . |. ...+|
T Consensus 406 ----fde~~n~~-------~~~~L~~aGv~V~y---------~----------~~--------------------~~k~H 435 (691)
T PRK05443 406 ----FDEEANIR-------WARRLEEAGVHVVY---------G----------VV--------------------GLKTH 435 (691)
T ss_pred ----ccHHHHHH-------HHHHHHHcCCEEEE---------c----------cC--------------------Cccce
Confidence 11122222 26899999998642 1 11 25899
Q ss_pred eeEEEEcce-------eEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 704 AKGMIVDDE-------YVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 704 SKlmIVDD~-------~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
||+++||++ |+.|||+|+|.||+..+ +|+++.+.|++.+
T Consensus 436 aK~~lid~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i~ 481 (691)
T PRK05443 436 AKLALVVRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 481 (691)
T ss_pred eEEEEEEeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHHH
Confidence 999999999 99999999999999866 9999999888654
No 137
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.75 E-value=2.6e-08 Score=109.73 Aligned_cols=135 Identities=24% Similarity=0.471 Sum_probs=108.7
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
+.|.|-|+|..|++||-||..+. ..|.||.|.+.+.. .||.|..+++||.
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------~tdafveik~~n~t-~ktdvf~kslnp~ 50 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------LTDAFVEIKFANTT-FKTDVFLKSLNPQ 50 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------cchheeEEEecccc-eehhhhhhhcCCc
Confidence 36899999999999999997654 26999999999888 8999999999999
Q ss_pred ee-eEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccC----------CCceeeeeeeccCCCCCCCCCC
Q 045478 105 WD-EHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILC----------GNEVDDWFPIAGSYGKNLKPFP 169 (852)
Q Consensus 105 Wn-E~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~----------g~~~~~w~~L~~~~g~~~k~~g 169 (852)
|| +-|.|.+.+. ...+.+++.|+|..+ ++.||+|.|.++.+.. |..+.+||++.+.-+. -.|
T Consensus 51 wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irg 127 (1169)
T KOG1031|consen 51 WNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRG 127 (1169)
T ss_pred ccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccc
Confidence 99 7799998763 456799999999988 8999999999988762 4457899999887542 356
Q ss_pred EEEEEEE---eeecCCcccccCCCCC
Q 045478 170 QLHVSMQ---YKPIGQIPLYKDGVGA 192 (852)
Q Consensus 170 ~l~l~l~---f~~~~~~~~~~~gv~~ 192 (852)
+|.+-++ |.++.+.|.-+.|+..
T Consensus 128 einvivkvdlfndlnkf~qsscgvkf 153 (1169)
T KOG1031|consen 128 EINVIVKVDLFNDLNKFPQSSCGVKF 153 (1169)
T ss_pred eeEEEEEEeehhhhhhccccccccee
Confidence 7776665 4566666666666554
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.70 E-value=1.3e-07 Score=109.46 Aligned_cols=96 Identities=24% Similarity=0.435 Sum_probs=79.3
Q ss_pred CCcEEEEEECC----eeEEEeeeecCCCCCeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCce
Q 045478 78 SNPYVSVCLSG----ATVAQTRVISNCENPFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEV 151 (852)
Q Consensus 78 sdpYv~v~l~~----~~~~rT~vi~~s~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~ 151 (852)
.||||+|.+.+ ....||+++.++.||.|||+|.|.+..+. .-+.|+|+|+|..+ +++||+..||+..|..|-
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-- 556 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI-- 556 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence 69999999854 23479999999999999999999977654 56699999998766 899999999999999886
Q ss_pred eeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 152 DDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 152 ~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
+..+|.+..|.++.. ..|-+.++|
T Consensus 557 -R~V~L~~~~g~~l~~-a~Lfv~~~~ 580 (581)
T PLN02222 557 -RAFPLHSRKGEKYKS-VKLLVKVEF 580 (581)
T ss_pred -ceEEccCCCcCCCCC-eeEEEEEEe
Confidence 468999999987644 566666655
No 139
>PLN02228 Phosphoinositide phospholipase C
Probab=98.68 E-value=1.4e-07 Score=108.85 Aligned_cols=99 Identities=21% Similarity=0.327 Sum_probs=82.3
Q ss_pred CCcEEEEEECCe----eEEEeeeecCCCCCee-eeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCc
Q 045478 78 SNPYVSVCLSGA----TVAQTRVISNCENPFW-DEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE 150 (852)
Q Consensus 78 sdpYv~v~l~~~----~~~rT~vi~~s~nP~W-nE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~ 150 (852)
.||||+|.+.+. ...||+++.|+.||.| ||+|.|++..+. .-|.|+|+|+|..+ +++||+..||+..|..|-
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY- 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV- 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence 699999998542 3369999999999999 999999987654 56699999998766 899999999999999886
Q ss_pred eeeeeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 151 VDDWFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 151 ~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
+.++|.+..|++.. .++|-+.+.+.+.
T Consensus 537 --R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 537 --RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred --eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 46899999998754 4678888887764
No 140
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.64 E-value=1.2e-07 Score=109.70 Aligned_cols=122 Identities=27% Similarity=0.421 Sum_probs=94.8
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEee-eecCCCC
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTR-VISNCEN 102 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~-vi~~s~n 102 (852)
+|.|+|+++++++...-.+. ...+ +||||.|.+-+. ...+|+ |..|+-|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~-------------------------~~~~-~dP~v~VeI~Gvp~D~~~~~Tk~v~~Ngfn 670 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTK-------------------------FGEI-SDPDVYVEIAGVPADCAEQKTKVVKNNGFN 670 (746)
T ss_pred eeEEEEEecCcccCCCCCCc-------------------------cccc-CCCCEEEEEcccccchhhhhceeeccCCcC
Confidence 89999999997654221110 0111 799999998653 447999 5567999
Q ss_pred CeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 103 PFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 103 P~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
|.|+|+|.|++..+. .-|.|.|.|.|..+ |+|+|+..||+..|..|-. -++|.+..|+.+ ....|-+.+++.+
T Consensus 671 P~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 671 PIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred cccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCcee---eeeecCCCCccc-cceeEEEEEEEec
Confidence 999999999998765 55699999999999 9999999999999998863 488888888774 4467777777654
No 141
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.62 E-value=3.8e-07 Score=99.23 Aligned_cols=155 Identities=17% Similarity=0.276 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccc--cccccc
Q 045478 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHD--NLFIKT 317 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~--~~~~~~ 317 (852)
.-.++|+..|..|+++|||......|......+. . -+.|+++|++||-|||+||+||-...-+.. ...+.
T Consensus 276 ~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~~------~-fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~m~~~L~- 347 (456)
T KOG3603|consen 276 WDLEAILNTIDEAQKFVYISVMDYFPSTIYSKNH------R-FWEIDDAIRRAAVRGVKVRLLVSCWKHSEPSMFRFLR- 347 (456)
T ss_pred hhHHHHHHHHHHHhhheeeeehhccchheeecCc------c-hhhhhHHHHHHhhcceEEEEEEeccCCCCchHHHHHH-
Confidence 3478999999999999999987777764333221 1 259999999999999999999932211110 00000
Q ss_pred cccccCCcHHHHhhhcCCCCEEEec--CCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCc
Q 045478 318 EGVMQTHDEETRKFFKHSSVNCVLA--PRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGR 395 (852)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~gv~v~~~--~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r 395 (852)
.+ +.....+++..|+|.++ |..... ..+....+|.|++|-+. .||+|.-|.+.++
T Consensus 348 -SL-----q~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aayIGTSNws~dY 404 (456)
T KOG3603|consen 348 -SL-----QDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAYIGTSNWSGDY 404 (456)
T ss_pred -HH-----HHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------ceeeeccCCCccc
Confidence 00 11122234566777654 322111 22334689999999987 7999999999877
Q ss_pred cCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceee-----eeChHHHHHHHHHHHHHhhh
Q 045478 396 YDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCK-----VEGPAAYDILINFEQRWRRS 457 (852)
Q Consensus 396 ~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~-----v~Gpaa~dl~~~F~~rW~~~ 457 (852)
|-... -+++. -.|+++.+|...|+.+|+..
T Consensus 405 f~~Ta--------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~ 439 (456)
T KOG3603|consen 405 FTSTA--------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWNST 439 (456)
T ss_pred eeccC--------------------------------ceEEEEecCCCCCcHHHHHHHHHhhccccc
Confidence 74210 01111 24689999999999999964
No 142
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.59 E-value=3.7e-08 Score=67.13 Aligned_cols=26 Identities=54% Similarity=0.685 Sum_probs=24.7
Q ss_pred EEEEeeEEEEcceeEEecCcCcccCC
Q 045478 700 IYVHAKGMIVDDEYVIMGSANINQRS 725 (852)
Q Consensus 700 iyvHSKlmIVDD~~~iIGSANln~RS 725 (852)
.+.|+|+||||+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 48999999999999999999999987
No 143
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.55 E-value=6e-07 Score=102.58 Aligned_cols=137 Identities=19% Similarity=0.198 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCCCc
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPE--GNPNS 622 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~pe--g~~~~ 622 (852)
..+..+++++|++|+++||||+-||-... ++.++..++.+|.++++||+|+|++..+-. |-..+
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~--------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~ 99 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDDE--------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGA 99 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCCc--------------hHHHHHHHHHHHHhcCCCcEEEEEEEccccccccccc
Confidence 46788999999999999999999997322 257788888888777899999999984210 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeE
Q 045478 623 AAVQEILYWQGQTMSMMYKIVAQALQDNG--LSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMI 700 (852)
Q Consensus 623 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~G--v~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 700 (852)
.. . .....+++.|.+++ +++ .+|.+..+- +....
T Consensus 100 ~~--------~----~~~~~~~~~l~~~~~gv~v--------~~f~~p~~~------------------------~e~~g 135 (451)
T PRK09428 100 AA--------S----NTNADWYCEMAQEYPGVDI--------PVYGVPVNT------------------------REALG 135 (451)
T ss_pred CC--------C----CcCHHHHHHHHHhCCCceE--------EEcCCcccc------------------------chhhh
Confidence 00 0 00012356777654 553 345321100 00012
Q ss_pred EEEeeEEEEcceeEEecCcCcccCCCCC----CCCceeEEEEecCc
Q 045478 701 YVHAKGMIVDDEYVIMGSANINQRSLEG----SRDTEIAMGAYQPH 742 (852)
Q Consensus 701 yvHSKlmIVDD~~~iIGSANln~RSm~~----n~DsEi~v~i~d~~ 742 (852)
..|-|++||||++++.| ||+++--+.. ..|. .+.|.+|.
T Consensus 136 r~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dr--y~~i~g~~ 178 (451)
T PRK09428 136 VLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYDR--YHLIRNAE 178 (451)
T ss_pred hceeeEEEECCCEEEec-ccccHHHhcCCcccCcce--EEEEeCch
Confidence 47999999999999999 8999855542 2355 44566654
No 144
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.41 E-value=7.9e-08 Score=108.86 Aligned_cols=92 Identities=20% Similarity=0.348 Sum_probs=73.9
Q ss_pred EEeeeecCCCCCeeeeEEEEeecCCC-ceEEEEEEecCCC-------------------------------------CCc
Q 045478 92 AQTRVISNCENPFWDEHFCVPVAHSV-VNLEFHVKDNDIL-------------------------------------GAE 133 (852)
Q Consensus 92 ~rT~vi~~s~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~-------------------------------------~~~ 133 (852)
.-|.|.+.|+||+|+|.|.|.+.+-. ...++-+||+|-- .|+
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 45788888999999999999998754 4569999997620 268
Q ss_pred eeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeecCCccc
Q 045478 134 LIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPL 185 (852)
Q Consensus 134 ~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~~~~~ 185 (852)
|+|.+.||+.+|.. ..++.||.| .++....+..|.++++++....+....
T Consensus 259 FLGciNipl~EiP~-~Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~~a 308 (1103)
T KOG1328|consen 259 FLGCINIPLAEIPP-DGLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEGRA 308 (1103)
T ss_pred cccccccchhcCCc-chHHHHhcc-CcccccccccceEEEEEEEeeeccccc
Confidence 99999999999974 348899999 555555688999999999987765443
No 145
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.39 E-value=1.6e-06 Score=100.10 Aligned_cols=135 Identities=22% Similarity=0.290 Sum_probs=96.4
Q ss_pred HHHHHHHHhccceEEEEE-eecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccc
Q 045478 243 EEICHAVLEARHLIYIIG-WSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVM 321 (852)
Q Consensus 243 ~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~ 321 (852)
..++++|.+|+++|+|+. |.+ | +..+.++|+.++++||+|+|++ +..+...... +
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~-~----------------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~~------~ 328 (438)
T COG1502 273 RLLLKAINSARESILIATPYFV-P----------------DRELLAALKAAARRGVDVRIII-PSLGANDSAI------V 328 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcC-C----------------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCChHH------H
Confidence 678999999999999997 533 1 2588899999999999999998 7432111110 0
Q ss_pred cCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCc
Q 045478 322 QTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEH 401 (852)
Q Consensus 322 ~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H 401 (852)
........+.+...|+++..++. + ...|.|++|||++ ++++|+.|++..-+..
T Consensus 329 ~~~~~~~~~~l~~~gv~i~~~~~--------------g--~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l--- 381 (438)
T COG1502 329 HAAYRAYLKELLEAGVKVYEYPG--------------G--AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL--- 381 (438)
T ss_pred HHHHHHHHHHHHHhCCEEEEecC--------------C--CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH---
Confidence 00012445667788999865432 0 2579999999998 9999999999832210
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHHHHhhh
Q 045478 402 RLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQRWRRS 457 (852)
Q Consensus 402 ~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~ 457 (852)
+ -.+.+.|+.+ .+.++...|...|...
T Consensus 382 ------------N-----------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 382 ------------N-----------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred ------------h-----------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 1 1467888888 7888999998776653
No 146
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.26 E-value=3.4e-07 Score=61.79 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=18.1
Q ss_pred EEEEeeEEEEcceeEEecCcCcccCC
Q 045478 700 IYVHAKGMIVDDEYVIMGSANINQRS 725 (852)
Q Consensus 700 iyvHSKlmIVDD~~~iIGSANln~RS 725 (852)
...|+|++||||++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 47999999999999999999999874
No 147
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.18 E-value=5.8e-07 Score=102.06 Aligned_cols=92 Identities=28% Similarity=0.400 Sum_probs=80.8
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe------eEEEeeeec
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA------TVAQTRVIS 98 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~------~~~rT~vi~ 98 (852)
-+.+|.|.|+-|+++-+.|..|. |||||+|.+... .+.||+|++
T Consensus 945 n~q~L~veVlhA~diipLD~NGl------------------------------SDPFVviEl~P~~~fp~v~~q~T~V~~ 994 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGL------------------------------SDPFVVIELIPKFRFPAVPVQKTKVVS 994 (1103)
T ss_pred cccchhhhhhccccccccCCCCC------------------------------CCCeEEEEeccccccccchhhhhhhhh
Confidence 46778899999999999988887 999999999764 467999999
Q ss_pred CCCCCeeeeEEEEeecCC-----CceEEEEEEecCCCC-CceeeeEeeeceecc
Q 045478 99 NCENPFWDEHFCVPVAHS-----VVNLEFHVKDNDILG-AELIGVVQIPVEKIL 146 (852)
Q Consensus 99 ~s~nP~WnE~f~~~~~~~-----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~ 146 (852)
.|+||+++|+|.|.+... ...+.|+|+|+|.+. ++|-|.+.+.+.++.
T Consensus 995 rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 995 RTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 999999999999998753 345799999999998 999999999998876
No 148
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.13 E-value=1e-05 Score=93.16 Aligned_cols=124 Identities=27% Similarity=0.481 Sum_probs=92.4
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe-----eEEEeeeec
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA-----TVAQTRVIS 98 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~-----~~~rT~vi~ 98 (852)
++.=+|.|.|+.|+.|+..... + .-|+|.|.+-++ +..+|.|+.
T Consensus 1062 l~p~~lsv~vigaRHL~k~gr~----------------i---------------~cPfVevEiiGa~~Dt~~~~t~~V~d 1110 (1267)
T KOG1264|consen 1062 LLPMTLSVKVLGARHLPKLGRS----------------I---------------ACPFVEVEIIGAEYDTNKFKTTVVND 1110 (1267)
T ss_pred ccceEEEEEEeeccccccCCCC----------------c---------------cCCcEEEEEeccccCCCceEEEEecc
Confidence 3456789999999999843211 1 469999998654 445667778
Q ss_pred CCCCCeee-eEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEE
Q 045478 99 NCENPFWD-EHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSM 175 (852)
Q Consensus 99 ~s~nP~Wn-E~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l 175 (852)
|+.||.|| |.|+|.+.++. ..+.|.|.|.|.++ ..|||++..|+..|.+|- +-.+|.+.-...+ --..|-+.+
T Consensus 1111 NGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl-ELaSLLv~i 1186 (1267)
T KOG1264|consen 1111 NGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL-ELASLLVFI 1186 (1267)
T ss_pred CCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhh-hhhhheeee
Confidence 99999999 99999998875 56699999999999 679999999999999885 3466644333221 124566777
Q ss_pred EeeecCC
Q 045478 176 QYKPIGQ 182 (852)
Q Consensus 176 ~f~~~~~ 182 (852)
+..|+..
T Consensus 1187 ~m~~~~~ 1193 (1267)
T KOG1264|consen 1187 EMRPVLE 1193 (1267)
T ss_pred EeccccC
Confidence 7777654
No 149
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.92 E-value=0.00018 Score=77.61 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=75.3
Q ss_pred hhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhh--cCCeEEEEEeCCC-ccccccc
Q 045478 238 HGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQ--EGVRVLLLIWDDK-TSHDNLF 314 (852)
Q Consensus 238 ~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~--~GV~VriLvwD~~-~s~~~~~ 314 (852)
|.++|+.+...|.+||++|+|+.- ||- .....|.+.|..+.+ .-.+|.||+ |.. |+...++
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~lasL------YlG---------~~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~ 100 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLASL------YLG---------KLERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPN 100 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeeee------ccc---------hhHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcc
Confidence 468999999999999999999864 332 124788899988865 479999998 874 3322221
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCC--CCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPR--YASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLC 392 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~--~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~ 392 (852)
-.+.-+. ..-.+++ ...|++.++.. .-+....+...+........|-|+.-+|++ ..+-|.|++
T Consensus 101 ~~s~llp---~~l~kkf--~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanls 166 (469)
T KOG3964|consen 101 SCSALLP---VWLGKKF--PERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANLS 166 (469)
T ss_pred cchhhch---HHHhhhh--hhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccch
Confidence 1110000 0011111 22455554421 101000111111112235789999999995 578899999
Q ss_pred CCccC
Q 045478 393 DGRYD 397 (852)
Q Consensus 393 ~~r~D 397 (852)
.+++.
T Consensus 167 ~dyfT 171 (469)
T KOG3964|consen 167 NDYFT 171 (469)
T ss_pred hhhhc
Confidence 85543
No 150
>PF13918 PLDc_3: PLD-like domain
Probab=97.91 E-value=7.4e-05 Score=73.72 Aligned_cols=58 Identities=28% Similarity=0.533 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccceEEEeecccccC------CCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCC
Q 045478 548 HSAYVKAIRSAQHFIYIENQYFIGS------SYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGN 619 (852)
Q Consensus 548 ~~ayl~aI~~Ak~~IyIEnqYFi~~------~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~ 619 (852)
.+|.++.|..|++||||+---|.+. ...||. ...|++-|+ + .|||+|++++..|...+
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~-----------ID~ALR~AA-~--~R~V~VRlLIS~W~ht~ 147 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPV-----------IDDALRRAA-I--ERGVKVRLLISCWKHTD 147 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchh-----------HHHHHHHHH-H--HcCCeEEEEEeecCCCC
Confidence 5599999999999999997766653 225773 334444443 2 47899999999986543
No 151
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.85 E-value=1.5e-05 Score=73.37 Aligned_cols=83 Identities=25% Similarity=0.523 Sum_probs=65.8
Q ss_pred CcCCCcEEEEEEC---CeeEEEeeeecCCCCCeeeeEEEEeec--------C--------CCceEEEEEEecCCC-----
Q 045478 75 MITSNPYVSVCLS---GATVAQTRVISNCENPFWDEHFCVPVA--------H--------SVVNLEFHVKDNDIL----- 130 (852)
Q Consensus 75 ~~~sdpYv~v~l~---~~~~~rT~vi~~s~nP~WnE~f~~~~~--------~--------~~~~l~~~V~d~d~~----- 130 (852)
.++-++||++.+. +....+|+++.++-.|+++.+|.|+|. . ...++.|+||....-
T Consensus 30 ~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~ 109 (143)
T cd08683 30 TVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDT 109 (143)
T ss_pred ecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccce
Confidence 4458999999964 455689999999999999999999986 1 135689999986532
Q ss_pred ------CCceeeeEeeeceeccC-CCceeeeeee
Q 045478 131 ------GAELIGVVQIPVEKILC-GNEVDDWFPI 157 (852)
Q Consensus 131 ------~~~~iG~~~i~l~~l~~-g~~~~~w~~L 157 (852)
+|=+||.++||+.+|.. ...+.+||++
T Consensus 110 ~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 110 IKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred eccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 35589999999999883 4458899985
No 152
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.71 E-value=0.00029 Score=74.51 Aligned_cols=189 Identities=17% Similarity=0.193 Sum_probs=108.0
Q ss_pred EEEeeecCCcccccCCCCCCCCCCCCCccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhcc
Q 045478 174 SMQYKPIGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEAR 253 (852)
Q Consensus 174 ~l~f~~~~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak 253 (852)
+..|.|...+.. ....-.|.|. -...+.-.+|++|... |....| .+=+.+-+.|++|+
T Consensus 90 S~TYwP~~SD~~------~P~LdLGWP~-~~~~~g~Tr~~vy~qP--p~~~~p-------------~IKE~vR~~I~~A~ 147 (284)
T PF07894_consen 90 SGTYWPMQSDTE------PPPLDLGWPE-TPSYKGVTRATVYFQP--PKDGQP-------------HIKEVVRRMIQQAQ 147 (284)
T ss_pred CcccCCCcCCCC------CCCCCCCCCC-CCcccCCceEEEEeCC--CCCCCC-------------CHHHHHHHHHHHhc
Confidence 667777654321 1112245554 1222344789999864 222222 34677889999999
Q ss_pred ceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhc
Q 045478 254 HLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFK 333 (852)
Q Consensus 254 ~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 333 (852)
+-|-|..=.|. |. .-|.|+|.++-+|||-||||+ |..+...++.+-.. +.. ....++
T Consensus 148 kVIAIVMD~FT-------D~---------dIf~DLleAa~kR~VpVYiLL-D~~~~~~Fl~Mc~~--~~v----~~~~~~ 204 (284)
T PF07894_consen 148 KVIAIVMDVFT-------DV---------DIFCDLLEAANKRGVPVYILL-DEQNLPHFLEMCEK--LGV----NLQHLK 204 (284)
T ss_pred ceeEEEeeccc-------cH---------HHHHHHHHHHHhcCCcEEEEe-chhcChHHHHHHHH--CCC----ChhhcC
Confidence 99998864432 11 456666665559999999998 98754322111000 000 011122
Q ss_pred CCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccC
Q 045478 334 HSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFAN 413 (852)
Q Consensus 334 ~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~ 413 (852)
+++|+... +..+............|+|+++||++ .+..|+--+++.- ..-|+
T Consensus 205 --nmrVRsv~-----G~~y~~rsg~k~~G~~~eKF~lvD~~--------~V~~GSYSFtWs~--~~~~r----------- 256 (284)
T PF07894_consen 205 --NMRVRSVT-----GCTYYSRSGKKFKGQLKEKFMLVDGD--------KVISGSYSFTWSS--SRVHR----------- 256 (284)
T ss_pred --CeEEEEec-----CCeeecCCCCeeeCcccceeEEEecc--------cccccccceeecc--ccccc-----------
Confidence 33333110 00111111112345789999999998 8899988777621 11111
Q ss_pred CCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHH
Q 045478 414 DFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRW 454 (852)
Q Consensus 414 d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW 454 (852)
-+-..+.|.+|....+-|..-.
T Consensus 257 -------------------~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 257 -------------------NLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred -------------------ceeEEEeccccchHhHHHHHHH
Confidence 2567799999999999997653
No 153
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.63 E-value=8.1e-05 Score=85.44 Aligned_cols=107 Identities=20% Similarity=0.435 Sum_probs=81.4
Q ss_pred CCcEEEEEECCe---eEEEeeeecCCCCCeeeeEEEEeecCC----------------CceEEEEEEec-CCCC-Cceee
Q 045478 78 SNPYVSVCLSGA---TVAQTRVISNCENPFWDEHFCVPVAHS----------------VVNLEFHVKDN-DILG-AELIG 136 (852)
Q Consensus 78 sdpYv~v~l~~~---~~~rT~vi~~s~nP~WnE~f~~~~~~~----------------~~~l~~~V~d~-d~~~-~~~iG 136 (852)
+|||++|...+. ...+|++++++.+|.|+|.|.|.+... ...+.+++|++ +... ++|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 899999998653 236999999999999999999987654 23468888884 4444 89999
Q ss_pred eEeeeceeccCCCceeeeeeeccC-CCCC---CCCCCEEEEEEEeeecCCcc
Q 045478 137 VVQIPVEKILCGNEVDDWFPIAGS-YGKN---LKPFPQLHVSMQYKPIGQIP 184 (852)
Q Consensus 137 ~~~i~l~~l~~g~~~~~w~~L~~~-~g~~---~k~~g~l~l~l~f~~~~~~~ 184 (852)
++++|+..+.....-+.||.|.-. .|+. ...-|.+++.+.|+.....|
T Consensus 231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlp 282 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLP 282 (800)
T ss_pred eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceecc
Confidence 999999988865667789999643 2322 22347899999999766554
No 154
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.60 E-value=5e-05 Score=51.70 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=22.4
Q ss_pred ccCccceEEecCCCCCCCCceEEEEcccCCCC
Q 045478 362 FTHHQKCVIVDTPASGNNRKISAFIGGLDLCD 393 (852)
Q Consensus 362 ~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~ 393 (852)
.++|+|++|||++ .+|+||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 4789999999998 99999999987
No 155
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.38 E-value=0.0011 Score=79.12 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=79.3
Q ss_pred HHHHHHHHhccc-----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 045478 549 SAYVKAIRSAQH-----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSA 623 (852)
Q Consensus 549 ~ayl~aI~~Ak~-----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~ 623 (852)
...++.|++|.+ .|.|+-.-+.+. ..++.++.+|. .+|++|.|++-...--+ ..
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~ii~aL~~Aa--~~Gk~V~v~veLkArfd--e~ 400 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTLYRTSKD-----------------SPIIDALIEAA--ENGKEVTVVVELKARFD--EE 400 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEecCC-----------------cHHHHHHHHHH--HcCCEEEEEEEehhhcc--ch
Confidence 467889999998 899975434321 13556666663 46799999998532111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEE
Q 045478 624 AVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVH 703 (852)
Q Consensus 624 ~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
..+ ...+.|.++|+++. |++ ....+|
T Consensus 401 ----------~ni-----~wa~~le~aG~~vi---------yg~------------------------------~~~k~H 426 (672)
T TIGR03705 401 ----------ANI-----RWARRLEEAGVHVV---------YGV------------------------------VGLKTH 426 (672)
T ss_pred ----------hhH-----HHHHHHHHcCCEEE---------EcC------------------------------CCeeee
Confidence 111 12568899999863 221 025899
Q ss_pred eeEEEEcc-------eeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 704 AKGMIVDD-------EYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 704 SKlmIVDD-------~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
||+|+||+ .++.||+.|+|......- +++++...+++.
T Consensus 427 ~K~~li~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~i 471 (672)
T TIGR03705 427 AKLALVVRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPEI 471 (672)
T ss_pred eEEEEEEEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChHH
Confidence 99999997 479999999999976655 778887656543
No 156
>PF13918 PLDc_3: PLD-like domain
Probab=97.37 E-value=0.00078 Score=66.59 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhh-hcCCeEEEEE
Q 045478 241 CWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKS-QEGVRVLLLI 303 (852)
Q Consensus 241 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a-~~GV~VriLv 303 (852)
-.++|+..|++|+++|||+.....|-+. ...+.+.| ..|.++|++|| +|||+||+|+
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~-~~~~~~YW-----P~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSR-YSKPNRYW-----PVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeee-cCCCCCcc-----hhHHHHHHHHHHHcCCeEEEEE
Confidence 3689999999999999999988888432 22232233 48999999887 8999999998
No 157
>PLN02866 phospholipase D
Probab=97.18 E-value=0.00068 Score=82.62 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEec
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIP 613 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP 613 (852)
.....+++++|.+||++|||+.=.|-+..+.+.+.. . .++..+...|.++ +.+||+|+||+=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~----D-~~g~RL~~lL~rK--AkrGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH----D-HESSRLDSLLEAK--AKQGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC----C-chHHHHHHHHHHH--HHCCCEEEEEEE
Confidence 567889999999999999996544332221111000 0 1245666666665 567899999853
No 158
>PLN02964 phosphatidylserine decarboxylase
Probab=97.16 E-value=0.00044 Score=81.77 Aligned_cols=85 Identities=12% Similarity=0.262 Sum_probs=67.7
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCCCceE-EEEEEecCCCC-CceeeeEeeeceeccCCCcee--e
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNL-EFHVKDNDILG-AELIGVVQIPVEKILCGNEVD--D 153 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~~~~l-~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~--~ 153 (852)
.|+|..+-.-+.+++||.+.++|.||+|||...|.+....... .|.|+|.+.++ ++++|.+.+++.++...+..+ .
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 5887776665666699999999999999999999887655444 99999999988 999999999988887554322 2
Q ss_pred eeeeccCCC
Q 045478 154 WFPIAGSYG 162 (852)
Q Consensus 154 w~~L~~~~g 162 (852)
-|.++++++
T Consensus 148 aF~lfD~dg 156 (644)
T PLN02964 148 SFDLLDPSS 156 (644)
T ss_pred HHHHHCCCC
Confidence 377777665
No 159
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.09 E-value=0.00051 Score=82.66 Aligned_cols=104 Identities=24% Similarity=0.378 Sum_probs=82.5
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISN 99 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~ 99 (852)
+-.|+|.|-|.-||+|+-..-.. ..||||+.++-. ....||+++.+
T Consensus 1521 Y~~~~LtImV~H~K~L~~Lqdg~------------------------------~P~pyVK~YLlPdp~k~sKRKTKvvrk 1570 (1639)
T KOG0905|consen 1521 YNNGTLTIMVMHAKGLALLQDGQ------------------------------DPDPYVKTYLLPDPRKTSKRKTKVVRK 1570 (1639)
T ss_pred EcCceEEEEhhhhcccccccCCC------------------------------CCCcceeEEecCCchHhhhhhhccccc
Confidence 34799999999999995322111 179999999853 24479999999
Q ss_pred CCCCeeeeEEEEe-ec--C-CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 100 CENPFWDEHFCVP-VA--H-SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 100 s~nP~WnE~f~~~-~~--~-~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
+.||.+||..... .. . ..+++.++|+..+.+. ..++|.+.|||.++...++..+||.|
T Consensus 1571 t~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1571 TRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred cCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 9999999988765 21 1 3467899999988777 89999999999998877767799998
No 160
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.0036 Score=71.04 Aligned_cols=98 Identities=20% Similarity=0.340 Sum_probs=79.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC------eeEEEeeeecCCCC
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG------ATVAQTRVISNCEN 102 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~------~~~~rT~vi~~s~n 102 (852)
+.|+|+.|.+|.=.. .+. -.|||.|.+-+ .+...|+...|+-.
T Consensus 1127 vtvkvvaandlkwqt-sgm------------------------------FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWa 1175 (1283)
T KOG1011|consen 1127 VTVKVVAANDLKWQT-SGM------------------------------FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWA 1175 (1283)
T ss_pred EEEEEEecccccchh-ccc------------------------------cccceEEEEecCcccchhhhccccccCCCcC
Confidence 889999999886221 111 47999999743 35678999999999
Q ss_pred CeeeeEEEEeecCC----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 103 PFWDEHFCVPVAHS----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 103 P~WnE~f~~~~~~~----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
|.+||+|+|.+... .-++.|.|+|..--. |.++|.+.+++.++......-.|++|
T Consensus 1176 PKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1176 PKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPL 1235 (1283)
T ss_pred cccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeec
Confidence 99999999998753 356799999988766 88999999999999977777789999
No 161
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.00077 Score=71.51 Aligned_cols=150 Identities=21% Similarity=0.178 Sum_probs=100.9
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCCC
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCEN 102 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~n 102 (852)
..|+++|..|++|..|+..+. -|||+...+.. ....||++..|+.|
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~------------------------------~d~~~~~~llpga~kl~slr~~t~~n~lN 142 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGL------------------------------ADPYVKLHLLPGAGKLNSLRTKTTRNTLN 142 (362)
T ss_pred hhcceeechhcccchhhhhhh------------------------------cchHHhhhcccchhhhhhhhHHhhccCcC
Confidence 458899999999999998887 89999998753 23378999999999
Q ss_pred CeeeeEEEEeec--CC--CceEEEEEEecCCCC-CceeeeEeeeceeccCCC--ceeeeeeeccCCC----CCCCCCCEE
Q 045478 103 PFWDEHFCVPVA--HS--VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGN--EVDDWFPIAGSYG----KNLKPFPQL 171 (852)
Q Consensus 103 P~WnE~f~~~~~--~~--~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~--~~~~w~~L~~~~g----~~~k~~g~l 171 (852)
|.|+|......- .+ ...+.+.|.|++.+. ++++|+..+++..+.+.+ ....||.-..+.+ ......|.|
T Consensus 143 ~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i 222 (362)
T KOG1013|consen 143 PEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAI 222 (362)
T ss_pred cceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccce
Confidence 999987765532 22 233467788888877 899999999998887533 2233443322211 113567889
Q ss_pred EEEEEeeecCCcc--cccC-CCCCCCCCCCCCccCccc
Q 045478 172 HVSMQYKPIGQIP--LYKD-GVGAGPDYQGVPKTYFPL 206 (852)
Q Consensus 172 ~l~l~f~~~~~~~--~~~~-gv~~~~~~~g~~~~~~p~ 206 (852)
.+++.|....... .|.. +.....+..|..+.|...
T Consensus 223 ~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~ 260 (362)
T KOG1013|consen 223 LISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQ 260 (362)
T ss_pred eeeeccCcCCCceEEEEEEeeeeeccccCCCCCcccee
Confidence 9999988765432 2333 333334555544444443
No 162
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.68 E-value=0.00083 Score=80.10 Aligned_cols=87 Identities=26% Similarity=0.350 Sum_probs=75.8
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeE-EEeeeecCCCCCeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATV-AQTRVISNCENPFWD 106 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~-~rT~vi~~s~nP~Wn 106 (852)
.++|.|++|-+|...|..+. .|||+.+.+++... -++..+.+++||+++
T Consensus 614 LvrVyvv~A~~L~p~D~ng~------------------------------adpYv~l~lGk~~~~d~~~yip~tlnPVfg 663 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGD------------------------------ADPYVKLLLGKKRTLDRAHYIPNTLNPVFG 663 (1105)
T ss_pred eEEEEEEEeeeccccCCCCC------------------------------cCceeeeeeccchhhhhhhcCcCCCCcHHH
Confidence 36799999999999998887 89999999998753 477888999999999
Q ss_pred eEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeecee
Q 045478 107 EHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEK 144 (852)
Q Consensus 107 E~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~ 144 (852)
+.|.+.+.-+. ..+.+.|+|.|.++ |+.||...|.++.
T Consensus 664 kmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 664 KMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred HHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 99999887664 55699999999998 9999999998863
No 163
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.0022 Score=68.11 Aligned_cols=100 Identities=25% Similarity=0.254 Sum_probs=78.0
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s~ 101 (852)
..-|.|++.++..|..+|..+. +||||.+.+... -..+|.+.+++.
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~------------------------------sDpyvS~~l~pdv~~~fkkKt~~~K~t~ 281 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGY------------------------------SDPYVSQRLSPDVGKKFKKKTQQKKKTL 281 (362)
T ss_pred CCceEEEEEEeeeeeccccCCC------------------------------CCccceeecCCCcchhhcccCcchhccC
Confidence 4558999999999999998877 999999998632 246899999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
+|+++++|.+.+.+. ...+.+.|+|.+.-+ .+++|-+..-.. ..++...+|+..
T Consensus 282 ~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 282 NPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWGRC 339 (362)
T ss_pred CccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc--ccchhhcCcccc
Confidence 999999999988764 245789999998875 888988655433 344555566543
No 164
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.0021 Score=69.48 Aligned_cols=108 Identities=21% Similarity=0.342 Sum_probs=84.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s~ 101 (852)
.|.|+|.|++|++|......+. .++|||+|++-.. ...+|+...++.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~-----------------------------~~apyVkVYlL~~g~c~ak~ktk~A~kT~ 318 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKS-----------------------------LPAPYVKVYLLENGFCIAKKKTKSARKTL 318 (405)
T ss_pred cCceeEEEEecccccccCCccc-----------------------------ccCceeEEEEcCCCceecccccccccccC
Confidence 5889999999999975432211 1799999998532 336899999999
Q ss_pred CCeeeeEEEEeecCCCceEEEEEEe-cCCCC-CceeeeEeeeceeccCCC-ceeeeeeeccCCC
Q 045478 102 NPFWDEHFCVPVAHSVVNLEFHVKD-NDILG-AELIGVVQIPVEKILCGN-EVDDWFPIAGSYG 162 (852)
Q Consensus 102 nP~WnE~f~~~~~~~~~~l~~~V~d-~d~~~-~~~iG~~~i~l~~l~~g~-~~~~w~~L~~~~g 162 (852)
.|.+-+...|.-..+...+.++||- ...+. +.|+|.++|-+++|-.+. .+-+||+|+....
T Consensus 319 ~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 319 DPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred chhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 9988888888877778888888885 44555 789999999999998766 7889999976544
No 165
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=96.15 E-value=0.01 Score=70.95 Aligned_cols=145 Identities=17% Similarity=0.093 Sum_probs=71.8
Q ss_pred CcccchhhhHHHHHHHHHhccceEEEEE-eecccceeEecCCCCCCCCCCcchHHHHHHHhhh--cCCeEEEEEeCCCcc
Q 045478 233 GKTFRHGQCWEEICHAVLEARHLIYIIG-WSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQ--EGVRVLLLIWDDKTS 309 (852)
Q Consensus 233 g~~y~~~~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~--~GV~VriLvwD~~~s 309 (852)
|-....+..-.+.+++|++|+|.|||+- |.+..... .... . ...+..|.+-+.+|-+ +--+|+|++
T Consensus 559 g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~-~~~~---~-n~v~~ela~rIv~a~ra~e~frVYIVI------ 627 (887)
T KOG1329|consen 559 GINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFN-WDSV---L-NKVGDELALRIVKAIRAGEKFRVYIVI------ 627 (887)
T ss_pred CCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccC-CCcc---c-chHHHHHHHHHHHHHhcCCceEEEEEE------
Confidence 3334334567788999999999999983 22211100 0000 0 0112344444444434 457888887
Q ss_pred ccccccccccc----------------ccCCcHHHHhhhcCCCCEEEecCCC--CCCcchhh---hhccccccccCccce
Q 045478 310 HDNLFIKTEGV----------------MQTHDEETRKFFKHSSVNCVLAPRY--ASNKLSIF---KQQVVGTLFTHHQKC 368 (852)
Q Consensus 310 ~~~~~~~~~~~----------------~~~~~~~~~~~l~~~gv~v~~~~~~--~~~~~~~~---~~~~~~~~~~hHqK~ 368 (852)
...|++...+. |........+.|+..|+.= ..+.. ....+..+ .+...+.+--=|.|+
T Consensus 628 PL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~-~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~ 706 (887)
T KOG1329|consen 628 PLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDP-ADYIDFLGLRCLGNREEQAQRLRREMIYVHSKL 706 (887)
T ss_pred eCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCc-cccceeeeeeeeeccccccccceEEEEEEeeee
Confidence 12233322101 1111234455666666551 00000 00000000 011111222349999
Q ss_pred EEecCCCCCCCCceEEEEcccCCCCCccC
Q 045478 369 VIVDTPASGNNRKISAFIGGLDLCDGRYD 397 (852)
Q Consensus 369 vVVD~~~~~~~~~~vAfvGG~nl~~~r~D 397 (852)
+|||++ .+.+|+.||.+.-.+
T Consensus 707 mIvDD~--------~vIIGSANINqRSm~ 727 (887)
T KOG1329|consen 707 MIVDDE--------YVIIGSANINQRSML 727 (887)
T ss_pred EEecCC--------EEEEeecccchhhcc
Confidence 999999 999999999994443
No 166
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.12 E-value=0.0017 Score=77.58 Aligned_cols=100 Identities=25% Similarity=0.311 Sum_probs=76.4
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
=-|++.|++|+.|..++..+. +|||+.|..-+.. ..|-++.+++||.|+
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~------------------------------sdp~a~v~f~~qs-~~T~~v~~tl~ptwd 254 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDE------------------------------SDPDAAVEFCGQS-KETEVVPGTLNPTWD 254 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccC------------------------------CCchhhhhccccc-ceeEeecCcCCCCcc
Confidence 337777888888888777666 9999999987766 689999999999999
Q ss_pred eEEEEeec----------CCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 107 EHFCVPVA----------HSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 107 E~f~~~~~----------~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
+...|.-. .....++|+|+|.+..+ ++++|+......-... .+.-.|+++.
T Consensus 255 q~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~ 316 (1105)
T KOG1326|consen 255 QTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTM 316 (1105)
T ss_pred ceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEee
Confidence 99888621 12345699999999999 9999997664332222 3456799985
No 167
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=96.07 E-value=0.031 Score=58.85 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeC
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWD 305 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD 305 (852)
+...+.+.+.|++|+++|+|..|. ..-..|.+.|++|.+|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~-----------------~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP-----------------EFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G-----------------GGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH-----------------HHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 577899999999999999999883 11258999999999999999999955
No 168
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=95.98 E-value=0.018 Score=61.23 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchh
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAA 624 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~ 624 (852)
.+|.+..-++|++|++-|=|..=-|+. .+|..-|..|. .+|+|-|||++.. ..
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD------------------~dIf~DLleAa-~kR~VpVYiLLD~--------~~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTD------------------VDIFCDLLEAA-NKRGVPVYILLDE--------QN 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeecccc------------------HHHHHHHHHHH-HhcCCcEEEEech--------hc
Confidence 578999999999999999999998972 34445555552 2588999999974 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEe
Q 045478 625 VQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHA 704 (852)
Q Consensus 625 ~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHS 704 (852)
++.++. | -.+.++..... ..+++-.++ +..|.... .+.+..-+|.
T Consensus 186 ~~~Fl~-----M----------c~~~~v~~~~~--~nmrVRsv~-----G~~y~~rs-------------g~k~~G~~~e 230 (284)
T PF07894_consen 186 LPHFLE-----M----------CEKLGVNLQHL--KNMRVRSVT-----GCTYYSRS-------------GKKFKGQLKE 230 (284)
T ss_pred ChHHHH-----H----------HHHCCCChhhc--CCeEEEEec-----CCeeecCC-------------CCeeeCcccc
Confidence 332222 2 22334432111 123332221 11122100 1123468999
Q ss_pred eEEEEcceeEEecCcCcccCCCCCCCCceeEEEE
Q 045478 705 KGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGA 738 (852)
Q Consensus 705 KlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i 738 (852)
|+||||.+.++.||--+..-|-..+ .-+...+
T Consensus 231 KF~lvD~~~V~~GSYSFtWs~~~~~--r~~~~~~ 262 (284)
T PF07894_consen 231 KFMLVDGDKVISGSYSFTWSSSRVH--RNLVTVL 262 (284)
T ss_pred eeEEEecccccccccceeecccccc--cceeEEE
Confidence 9999999999999999998888755 4444444
No 169
>PLN02352 phospholipase D epsilon
Probab=95.90 E-value=0.022 Score=68.34 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCC-CCCCCCCcchHHHHHHHhhh--cCCeEEEEE
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPT-KPLPSFGELSFGELLKHKSQ--EGVRVLLLI 303 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~-~~~~~~~~~~l~~~L~~~a~--~GV~VriLv 303 (852)
.....+.++||++|||+|||+.=-|-...+.+..+. .....-.+..|.+.|.+|.+ ++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 568899999999999999998321211111111110 00000123467777777754 578888887
No 170
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.55 E-value=0.013 Score=63.89 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=75.6
Q ss_pred CCcEEEEEEC----CeeEEEeeeecCCCCCeeeeEEEEeecCC---C---------ceEEEEEEecCCCC--CceeeeEe
Q 045478 78 SNPYVSVCLS----GATVAQTRVISNCENPFWDEHFCVPVAHS---V---------VNLEFHVKDNDILG--AELIGVVQ 139 (852)
Q Consensus 78 sdpYv~v~l~----~~~~~rT~vi~~s~nP~WnE~f~~~~~~~---~---------~~l~~~V~d~d~~~--~~~iG~~~ 139 (852)
-|-|+.+.+. .....+|.+++++.+|.++|.|.+.+... . ..+.|+++.+..+- |.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 4567776652 23347999999999999999999987651 1 23689999987764 89999999
Q ss_pred eeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 140 IPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 140 i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
+.++.|...-+++..++|.+.+. ..+|+|.++++.-
T Consensus 468 ikle~Len~cei~e~~~l~DGRK---~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDGRK---AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceecccccc---ccCCeeEEEEEEe
Confidence 99999987778888999975433 4578888887753
No 171
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.16 E-value=0.025 Score=64.83 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=66.4
Q ss_pred EEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC---C--eeEEEeeeecCCCCCeee
Q 045478 32 SILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS---G--ATVAQTRVISNCENPFWD 106 (852)
Q Consensus 32 ~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~---~--~~~~rT~vi~~s~nP~Wn 106 (852)
-.++|++|.++|.+++ +|||..+.-- + .-+.||.++.++++|.|.
T Consensus 141 ~~~~~~~ld~kd~f~k------------------------------sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~ 190 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSK------------------------------SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA 190 (529)
T ss_pred eeeeeeecCccccccc------------------------------CCcceEEEEecCCCceeeccccceeccCCCCccc
Confidence 3456788888888877 9999987742 2 256899999999999995
Q ss_pred eEEEEeecC-----CCceEEEEEEecCCCC-CceeeeEeeeceeccC
Q 045478 107 EHFCVPVAH-----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILC 147 (852)
Q Consensus 107 E~f~~~~~~-----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~ 147 (852)
+ |.++... ....+.+.++|.+.-+ +++||++..++.++..
T Consensus 191 ~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 191 P-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred c-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 4 5555332 3466789999999988 6999999999988864
No 172
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.15 E-value=0.084 Score=62.76 Aligned_cols=101 Identities=21% Similarity=0.380 Sum_probs=76.0
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC---e---eEEEeeee
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG---A---TVAQTRVI 97 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~---~---~~~rT~vi 97 (852)
.+-++|.|+|+++.-|..++ ...||.|.+=+ . +..||+++
T Consensus 700 vIA~t~sV~VISgqFLSdrk----------------------------------vgtyVEVdmfgLP~Dt~Rk~~rtrt~ 745 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----------------------------------VGTYVEVDMFGLPTDTIRKEFRTRTV 745 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----------------------------------cCceEEEEecCCCchhhhhhhhhccc
Confidence 46789999999999887653 46799999743 1 34688877
Q ss_pred c-CCCCCeeee-EEEEe--ecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 98 S-NCENPFWDE-HFCVP--VAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 98 ~-~s~nP~WnE-~f~~~--~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
. |+.||+|+| .|.|. +-+....+.|.|++++ ..+||.-.+|+.-|..|. +...|-++.+.|
T Consensus 746 ~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~GY---rhv~LRse~Nqp 810 (1189)
T KOG1265|consen 746 QGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAGY---RHVCLRSESNQP 810 (1189)
T ss_pred cCCCCCcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCcc---eeEEecCCCCCc
Confidence 6 599999995 57775 3445567789998864 569999999999999886 346665555655
No 173
>PLN03008 Phospholipase D delta
Probab=95.15 E-value=0.038 Score=66.59 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=40.2
Q ss_pred ecCCcccch-hhhHHHHHHHHHhccceEEEEE-eecccceeEecCCC-CCCCCCCcchHHHHHHHhh--hcCCeEEEEE
Q 045478 230 LDGGKTFRH-GQCWEEICHAVLEARHLIYIIG-WSVFHPVKLVREPT-KPLPSFGELSFGELLKHKS--QEGVRVLLLI 303 (852)
Q Consensus 230 l~~g~~y~~-~~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~r~~~-~~~~~~~~~~l~~~L~~~a--~~GV~VriLv 303 (852)
|+.|+...- ..+..+.+++|++|||.|||+. |.+.. .+.+.... .......+..|...|.+|. .++-+|+|++
T Consensus 556 l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss-~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 556 LECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGS-SYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred cccccccchhhhHHHHHHHHHHhhccEEEEehhhhhcc-ccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 344444333 3457889999999999999983 22221 11110000 0000012345666666664 4688999887
No 174
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.08 E-value=0.56 Score=45.14 Aligned_cols=120 Identities=20% Similarity=0.300 Sum_probs=81.2
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCee--EEEeeeec-CCCCCe
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGAT--VAQTRVIS-NCENPF 104 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~--~~rT~vi~-~s~nP~ 104 (852)
.+.++|++..+++..+ ...||....+... .+.|.... ....-.
T Consensus 8 ~~~l~i~~l~~~p~~~----------------------------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~ 53 (143)
T PF10358_consen 8 QFDLTIHELENLPSSN----------------------------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQ 53 (143)
T ss_pred EEEEEEEEeECcCCCC----------------------------------CEEEEEEEECCCCccceeeeeeeccccEEE
Confidence 4678899998888511 2345555555443 34554433 355689
Q ss_pred eeeEEEEeecC---------CCceEEEEEEecCCCCC-ceeeeEeeeceeccCC--CceeeeeeeccCCCCCCCCCCEEE
Q 045478 105 WDEHFCVPVAH---------SVVNLEFHVKDNDILGA-ELIGVVQIPVEKILCG--NEVDDWFPIAGSYGKNLKPFPQLH 172 (852)
Q Consensus 105 WnE~f~~~~~~---------~~~~l~~~V~d~d~~~~-~~iG~~~i~l~~l~~g--~~~~~w~~L~~~~g~~~k~~g~l~ 172 (852)
|||.|.+.+.- ....+.|.|+.....+. ..+|.+.|.|.+...- .....-++|... .+..+.|+
T Consensus 54 w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~ 129 (143)
T PF10358_consen 54 WNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLS 129 (143)
T ss_pred EeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEE
Confidence 99999988642 12346888888754443 5999999999999863 455666776432 25678999
Q ss_pred EEEEeeecCCccc
Q 045478 173 VSMQYKPIGQIPL 185 (852)
Q Consensus 173 l~l~f~~~~~~~~ 185 (852)
++|++.++...+.
T Consensus 130 isi~~~~~~~~~~ 142 (143)
T PF10358_consen 130 ISISLSELREDPD 142 (143)
T ss_pred EEEEEEECccCCC
Confidence 9999998876654
No 175
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=94.97 E-value=0.02 Score=49.56 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=53.2
Q ss_pred EEECCeeEEEeeeecCCCCCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeee
Q 045478 84 VCLSGATVAQTRVISNCENPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFP 156 (852)
Q Consensus 84 v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~ 156 (852)
+.+......||.+...+.||+++|+|.|.++- +...+.|.|.. ... .+.||.+.+.+.++- .++.++|..
T Consensus 29 ~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~g-eeE~~HW~e 102 (103)
T cd08684 29 LTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLS-TQETDHWLE 102 (103)
T ss_pred EecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecccCC-HHHhhhhhc
Confidence 44566666899999999999999999999775 23445777776 333 789999999998774 345677865
No 176
>PLN02270 phospholipase D alpha
Probab=94.83 E-value=0.081 Score=63.81 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHhccceEEEEE-eecccceeEec-CCCCCCCCC----CcchHHHHHHHhh--hcCCeEEEEE
Q 045478 239 GQCWEEICHAVLEARHLIYIIG-WSVFHPVKLVR-EPTKPLPSF----GELSFGELLKHKS--QEGVRVLLLI 303 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~r-~~~~~~~~~----~~~~l~~~L~~~a--~~GV~VriLv 303 (852)
.....+.++||++|+++|||+. |.+...+ -.. ++-++...+ .+..|...|.+|. .++-+|+|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~-~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSF-AWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhh-hhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5688899999999999999983 3222211 110 000000001 1245556666654 4689999987
No 177
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.38 E-value=0.51 Score=52.17 Aligned_cols=104 Identities=17% Similarity=0.263 Sum_probs=77.3
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecC--------CCceEEEEEEecC-CCC-CceeeeEeeeceec--
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAH--------SVVNLEFHVKDND-ILG-AELIGVVQIPVEKI-- 145 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~--------~~~~l~~~V~d~d-~~~-~~~iG~~~i~l~~l-- 145 (852)
..-.+..++++.. ..|-.+..+..|.||....+.+.. ....|+++++.-+ ..+ .+.||-+.++|..+
T Consensus 18 ~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~ 96 (340)
T PF12416_consen 18 HPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV 96 (340)
T ss_pred ccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence 4557778888877 678888889999999999998753 2355788888877 334 78999999999988
Q ss_pred -cCC--CceeeeeeeccCCCCCCCCCCEEEEEEEeeecCC
Q 045478 146 -LCG--NEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQ 182 (852)
Q Consensus 146 -~~g--~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~~ 182 (852)
..+ .....||+|++.+++-.+...+|.+.+.......
T Consensus 97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 655 4567899999885544345566776666655443
No 178
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=94.34 E-value=6.6 Score=46.30 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHhccc-----eEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccc
Q 045478 239 GQCWEEICHAVLEARH-----LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNL 313 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~ 313 (852)
=+.|+.+.+.|++|-. .|-++-|.. +....|.++|.+||+.|-+|-+|| .-. .
T Consensus 351 YeSF~~Vv~fl~qAA~DP~VLAIKqTLYRt----------------~~dSpIV~ALi~AA~nGKqVtvlV-ELk-----A 408 (696)
T COG0855 351 YESFEPVVEFLRQAAADPDVLAIKQTLYRT----------------SKDSPIVRALIDAAENGKQVTVLV-ELK-----A 408 (696)
T ss_pred hhhhHHHHHHHHHhhcCCCeEEEEEEEEec----------------CCCCHHHHHHHHHHHcCCeEEEEE-EEh-----h
Confidence 4678899999999964 444454432 223699999999999999999998 321 1
Q ss_pred cccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCC
Q 045478 314 FIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTP 374 (852)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~ 374 (852)
.+. ...+-.+.+.|+.+||+|++-- + -+--|.|+++|=-+
T Consensus 409 RFD-----EE~NI~WAk~LE~AGvhVvyG~--~--------------glKtHAKm~lVvRr 448 (696)
T COG0855 409 RFD-----EEANIHWAKRLERAGVHVVYGV--V--------------GLKTHAKMLLVVRR 448 (696)
T ss_pred hcC-----hhhhhHHHHHHHhCCcEEEecc--c--------------ceeeeeeEEEEEEe
Confidence 000 0001235677899999998521 1 13569999988443
No 179
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=93.69 E-value=1.4 Score=43.92 Aligned_cols=140 Identities=19% Similarity=0.273 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
+.....+...|+.|++...+..|+-. ++-.-+.+.|..+..+||++|||- ++.-+.
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~---------------sG~sll~~~L~d~~~Kgvkgkilt-s~Ylnf-------- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITE---------------SGLSLLFDLLLDLVNKGVKGKILT-SDYLNF-------- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeC---------------ccHHHHHHHHHHHhcCCceEEEec-ccccCc--------
Confidence 57789999999999999888877532 123578899999999999999996 443111
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
+.....++.+.-.+|+|+++.- + ...+|-|-.+.-.. ....|++|+.||+++-...
T Consensus 94 ----TdP~al~~Ll~~~nve~r~~~~-~--------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 94 ----TDPVALRKLLMLKNVELRVSTI-G--------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred ----cCHHHHHHHHhhhccceEEEec-C--------------ccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 1122344455555688876431 1 13567777765332 1138999999999844321
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCcee-eceeeeeChHHHHHHHHHHHHHh
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWH-DMHCKVEGPAAYDILINFEQRWR 455 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWh-Dv~~~v~Gpaa~dl~~~F~~rW~ 455 (852)
. ..|- -+...-.|-.|..+...|+..|.
T Consensus 150 -n----------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~ 178 (198)
T COG3886 150 -N----------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQ 178 (198)
T ss_pred -C----------------------------HHHHhhhccccccchHHHHHHHHHHHHH
Confidence 1 1221 12334467889999999999997
No 180
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=90.95 E-value=1.8 Score=42.64 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=57.2
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEE--CCeeE---EEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL--SGATV---AQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l--~~~~~---~rT~vi~~ 99 (852)
++..+.|+|+++.++.-.+ . ++.||++.+ ++... ..|+.+..
T Consensus 6 ~~~~~~v~i~~~~~~~~~~---~------------------------------~~l~V~v~l~~g~~~L~~pv~T~~v~~ 52 (158)
T cd08398 6 INSNLRIKILCATYVNVND---I------------------------------DKIYVRTGIYHGGEPLCDNVNTQRVPC 52 (158)
T ss_pred CCCCeEEEEEeeccCCCCC---c------------------------------CeEEEEEEEEECCEEccCeeEecccCC
Confidence 4677999999999886321 1 678888865 44322 24444443
Q ss_pred CCCCeeeeEEEEeecC----CCceEEEEEEecCCCC-----CceeeeEeeecee
Q 045478 100 CENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG-----AELIGVVQIPVEK 144 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-----~~~iG~~~i~l~~ 144 (852)
.++.|||-..|++.- ..+.+.|+|++....+ ...||.+.+++-+
T Consensus 53 -~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 53 -SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred -CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 689999998887543 3467899999854311 2468888777755
No 181
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.71 E-value=1.7 Score=38.25 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=62.5
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeee
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
++-.+++.+++..|+.|.-.. ..+..|++.|+|.+. ...++++.|+=.|- .++.|...+.+++...+ .-++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~- 79 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLD- 79 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhhccc----ceec-
Confidence 688999999999999998654 357899999999986 56788888876543 45788888888884322 1222
Q ss_pred ccCCCCCCCCCCEEEEEEEe
Q 045478 158 AGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 158 ~~~~g~~~k~~g~l~l~l~f 177 (852)
..++|.+...+.|
T Consensus 80 -------lepqg~l~~ev~f 92 (98)
T cd08687 80 -------MEPQLCLVAELTF 92 (98)
T ss_pred -------cccccEEEEEEEe
Confidence 2567788888777
No 182
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=87.87 E-value=2 Score=47.11 Aligned_cols=137 Identities=16% Similarity=0.211 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHhcc-----ceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 045478 240 QCWEEICHAVLEAR-----HLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak-----~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~ 314 (852)
+.|+.+++.|++|- .+|-|+-|.+.. ...|.++|.+||+.|-+|.++| .-...+.
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~----------------~S~iv~aLi~AA~nGK~Vtv~v-ELkARFD--- 77 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLYRVAS----------------NSPIVNALIEAAENGKQVTVLV-ELKARFD--- 77 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEESSS-T----------------T-HHHHHHHHHHHTT-EEEEEE-STTSSST---
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEEecCC----------------CCHHHHHHHHHHHcCCEEEEEE-EEecccc---
Confidence 45777888888884 578888886532 3699999999999999999998 4321110
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDG 394 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~ 394 (852)
.-. +-.+.+.|+.+||+|.+- .++ +--|.|+++|=-+..+ .-+..+++|-=|...
T Consensus 78 ----Ee~---Ni~Wa~~Le~aGv~ViyG--~~g--------------lKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe- 132 (352)
T PF13090_consen 78 ----EEN---NIHWAKRLEEAGVHVIYG--VPG--------------LKVHAKICLIVRREGG-GLRRYAHLGTGNYNE- 132 (352)
T ss_dssp ----TCC---CCCCCHHHHHCT-EEEE----TT---------------EE--EEEEEEEEETT-EEEEEEEEESS-SST-
T ss_pred ----HHH---HhHHHhhHHhcCeEEEcC--CCC--------------hhheeeEEEEEEEeCC-cEEEEEEEcCCCcCc-
Confidence 000 112456788999999852 121 2459999998544222 122367777655433
Q ss_pred ccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHH
Q 045478 395 RYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQ 452 (852)
Q Consensus 395 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~ 452 (852)
. +. .-+-|+++.-.-| .+.|+...|..
T Consensus 133 ------------------------~------TA-r~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 133 ------------------------K------TA-RIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp ------------------------T------HC-CCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred ------------------------c------ch-hheecceeecCCHHHHHHHHHHHHH
Confidence 0 01 2456888877776 68899999843
No 183
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=87.70 E-value=4.9 Score=39.27 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCCC--------------ceEEEEEEecCCCC-CceeeeEeeec
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSV--------------VNLEFHVKDNDILG-AELIGVVQIPV 142 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~~--------------~~l~~~V~d~d~~~-~~~iG~~~i~l 142 (852)
+-.++-+.+.+++ ++|+.+.-+.+|.++|.|-|++.... ..+++.|-.-|..+ ..++|.-.+.=
T Consensus 34 s~~~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldW 112 (156)
T PF15627_consen 34 STFTLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDW 112 (156)
T ss_pred eEEEEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehH
Confidence 4445556677888 99999999999999999999986532 23566665555555 57888877776
Q ss_pred eeccCCCce--eeeeeeccCCCCCCCCCCEEEEEEEeeecC
Q 045478 143 EKILCGNEV--DDWFPIAGSYGKNLKPFPQLHVSMQYKPIG 181 (852)
Q Consensus 143 ~~l~~g~~~--~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~ 181 (852)
..+...+.. ..-..|.+.....--+.|.|.+++...|..
T Consensus 113 R~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 113 RKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 666543322 223344333222112568888888877753
No 184
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=87.47 E-value=3.9 Score=40.96 Aligned_cols=72 Identities=17% Similarity=0.337 Sum_probs=48.5
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEE--CCee---EEEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL--SGAT---VAQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l--~~~~---~~rT~vi~~ 99 (852)
++..+.|+|+.+.+|.-.+ . .++.||++.+ ++.. ...|+.+.-
T Consensus 6 ~~~~f~i~i~~~~~~~~~~--~------------------------------~~~l~V~~~lyhG~~~L~~p~~T~~~~~ 53 (173)
T cd08693 6 IEEKFSITLHKISNLNAAE--R------------------------------TMKVGVQAGLFHGGESLCKTVKTSEVSG 53 (173)
T ss_pred cCCCEEEEEEEeccCccCC--C------------------------------CceEEEEEEEEECCEEccCceEccccCC
Confidence 4667899999999987411 0 1567888654 4442 235655555
Q ss_pred CCCCeeeeEEEEeecC----CCceEEEEEEecC
Q 045478 100 CENPFWDEHFCVPVAH----SVVNLEFHVKDND 128 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d 128 (852)
+.++.|||.+.|++.- ..+.+.|+|++..
T Consensus 54 ~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 54 KNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 6779999998887542 3467789998753
No 185
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=86.06 E-value=1.4 Score=46.99 Aligned_cols=119 Identities=18% Similarity=0.099 Sum_probs=73.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
.|.|.+.++++++|+-..... -.+.+.||++..+..-.+||++-+....-.|
T Consensus 50 tGiL~~H~~~GRGLr~~p~~k----------------------------glt~~~ycVle~drqh~aRt~vrs~~~~f~w 101 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQK----------------------------GLTVCFYCVLEPDRQHPARTRVRSSGPGFAW 101 (442)
T ss_pred cceEEEEEecccccccChhcc----------------------------CceeeeeeeeeecccCccccccccCCCCccc
Confidence 688999999999996332111 1236889999999876689999888888899
Q ss_pred eeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
.|+|+..+.. ...+.+-|+.++... ..++-..-|.+..+. .+.-++-+.|. ..+.|++.++|.+.+.
T Consensus 102 ~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~-rqspd~~~Al~------lePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 102 AEDFKHDVVN-IEVLHYLVYSWPPQRRHKLCHLGLLEAFVVD-RQSPDRVVALY------LEPRGQPPLRLPLADP 169 (442)
T ss_pred hhhceeeccc-ceeeeEEEeecCchhhccccccchhhhhhhh-hcCCcceeeee------cccCCCCceecccCCh
Confidence 9999988753 334566676665433 333322233333332 12222333331 1345667777776653
No 186
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=84.23 E-value=6.6 Score=38.42 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=46.2
Q ss_pred CCcEEEEEE--CCe---eEEEeeeecCCCCCeeeeEEEEeecC----CCceEEEEEEecCCCC---CceeeeEeeeceec
Q 045478 78 SNPYVSVCL--SGA---TVAQTRVISNCENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG---AELIGVVQIPVEKI 145 (852)
Q Consensus 78 sdpYv~v~l--~~~---~~~rT~vi~~s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~---~~~iG~~~i~l~~l 145 (852)
++.||++.+ ++. .+..|+....+.++.|||...|++.- ..+.+.|+|++.+..+ ...||.+.+++-+-
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 567777765 443 22344444444789999998887542 3467899999865433 57999999998764
No 187
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=83.95 E-value=8.8 Score=41.73 Aligned_cols=40 Identities=33% Similarity=0.332 Sum_probs=28.9
Q ss_pred EEEEeeEEEE----cceeEEecCcCccc-CCCCCCCCceeEEEEecC
Q 045478 700 IYVHAKGMIV----DDEYVIMGSANINQ-RSLEGSRDTEIAMGAYQP 741 (852)
Q Consensus 700 iyvHSKlmIV----DD~~~iIGSANln~-RSm~~n~DsEi~v~i~d~ 741 (852)
+-+|+|+.+. =+..++|||||+.. -.+. .+-.| +++..|+
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecCh
Confidence 5799999999 35689999999988 2222 24479 5566565
No 188
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=82.66 E-value=5.5 Score=39.28 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=50.0
Q ss_pred CCcEEEEEE--CCee---EEEeeeecCCCCCeeeeEEEEeecC----CCceEEEEEEecCCCC-CceeeeEeeeceec
Q 045478 78 SNPYVSVCL--SGAT---VAQTRVISNCENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG-AELIGVVQIPVEKI 145 (852)
Q Consensus 78 sdpYv~v~l--~~~~---~~rT~vi~~s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l 145 (852)
++.||++.+ ++.. .-.|+.+.-+..+.|||-..|++.- ..+.+.|+||+.+..+ ...||.+.+++-+-
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 788999876 3332 2366666667789999998888653 3467899999976554 67899998888654
No 189
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=82.53 E-value=2.8 Score=46.02 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=30.3
Q ss_pred EEEEeeEEEEc-------ceeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 700 IYVHAKGMIVD-------DEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 700 iyvHSKlmIVD-------D~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
.-+|||+++|= -+|+-+|+-|+|...-..= |.+++..-+++.+
T Consensus 102 lKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~i~ 151 (352)
T PF13090_consen 102 LKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPEIG 151 (352)
T ss_dssp -EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HHHH
T ss_pred hhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHHHH
Confidence 58999999985 3799999999999998755 7888887666543
No 190
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=81.59 E-value=12 Score=37.38 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=58.5
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEE--CCeeE---EEeeeec-
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL--SGATV---AQTRVIS- 98 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l--~~~~~---~rT~vi~- 98 (852)
+...+.|+|.++.+++....... ++.|+++.+ ++... ..|+...
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~------------------------------~~~~v~~~l~~g~~~L~~~~~T~~~~~ 55 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSF------------------------------EDFYLSCSLYHGGRLLCSPVTTKPVKI 55 (171)
T ss_pred ccccEEEEEEEeecCChHHhhcc------------------------------ccEEEEEEEEECCEECcCceecccccc
Confidence 45678899999999885432222 678888865 44422 2443321
Q ss_pred -C--CCCCeeeeEEEEeecC----CCceEEEEEEecCCCC----------CceeeeEeeeceec
Q 045478 99 -N--CENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG----------AELIGVVQIPVEKI 145 (852)
Q Consensus 99 -~--s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~----------~~~iG~~~i~l~~l 145 (852)
+ ...+.|||...|++.- ..+.+.|++++....+ ...||.+.+++-+-
T Consensus 56 ~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 56 TKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred ccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 1 3357899998887542 3467899998854332 46888888887653
No 191
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=78.54 E-value=10 Score=37.72 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=56.6
Q ss_pred CCcEEEEEECCeeEEEeeeecC--CCCCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceecc
Q 045478 78 SNPYVSVCLSGATVAQTRVISN--CENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKIL 146 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~--s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~ 146 (852)
...|++|.+++..|.+|+...- ...=.++|.|.+.+..--..|.++|+.....++.+|+++.||+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 5779999999999898886643 33356789999999887788999999988877999999999975443
No 192
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=76.32 E-value=9.9 Score=38.37 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=32.4
Q ss_pred EEEeeeecCCCCCeeeeEEEEeecCC---CceEEEEEEecCCCC----CceeeeEeeecee
Q 045478 91 VAQTRVISNCENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG----AELIGVVQIPVEK 144 (852)
Q Consensus 91 ~~rT~vi~~s~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~----~~~iG~~~i~l~~ 144 (852)
.+.|.|...+.+|.|+|+|.+.++.. ...|.|++++...-. +..+|-+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 46888888899999999999998764 356788888754322 2688888888876
No 193
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=75.42 E-value=17 Score=34.98 Aligned_cols=67 Identities=25% Similarity=0.398 Sum_probs=45.3
Q ss_pred CcEEEEEE--CCe----eEEEeeeecCC-CCCeeeeEEEEeecC----CCceEEEEEEecCCCC-C----ceeeeEeeec
Q 045478 79 NPYVSVCL--SGA----TVAQTRVISNC-ENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG-A----ELIGVVQIPV 142 (852)
Q Consensus 79 dpYv~v~l--~~~----~~~rT~vi~~s-~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-~----~~iG~~~i~l 142 (852)
+.||++.+ ++. .+..|+...-+ .++.|||...|++.- ..+.+.|+|+..+... . ..||.+.+++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 44666655 443 23367666655 799999988887542 3567899999876555 3 6999999998
Q ss_pred eec
Q 045478 143 EKI 145 (852)
Q Consensus 143 ~~l 145 (852)
-+-
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 765
No 194
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.87 E-value=1.7 Score=51.47 Aligned_cols=95 Identities=17% Similarity=0.026 Sum_probs=66.6
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccC-CCceeeee
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILC-GNEVDDWF 155 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~-g~~~~~w~ 155 (852)
-+||+.|.+.-...+.+.+...+..|.|+|+|++. .+....+.+.|+.+.... +.....+.+-.+++.. ....+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~-v~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVE-VVAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeee-eecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 68999999988776777777789999999999999 456667888888876555 5555555565555553 12345688
Q ss_pred eeccCCCCCCCCCCEEEEEEEeeecC
Q 045478 156 PIAGSYGKNLKPFPQLHVSMQYKPIG 181 (852)
Q Consensus 156 ~L~~~~g~~~k~~g~l~l~l~f~~~~ 181 (852)
.+ ++.|++...+.++...
T Consensus 107 ~~--------~~~g~~~~~~~~~~~~ 124 (694)
T KOG0694|consen 107 LI--------EELGTLLKPAALTGTL 124 (694)
T ss_pred cc--------ccccceeeeecccCcC
Confidence 75 3346666666665543
No 195
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=68.94 E-value=11 Score=38.06 Aligned_cols=53 Identities=21% Similarity=0.428 Sum_probs=38.0
Q ss_pred EEEeeeecCCCCCeeeeEEEEeecC---CCceEEEEEEecCCC--C-CceeeeEeeece
Q 045478 91 VAQTRVISNCENPFWDEHFCVPVAH---SVVNLEFHVKDNDIL--G-AELIGVVQIPVE 143 (852)
Q Consensus 91 ~~rT~vi~~s~nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~--~-~~~iG~~~i~l~ 143 (852)
-++|-|.....+|.|+|++.+.++. ....|.|+++..... + ...+|-+.+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 3689999999999999999998875 346677777653322 1 256777777763
No 196
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=68.75 E-value=41 Score=33.86 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHH-HHHHHHHHHHcCCCcEEEEEecC
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPME-LALKIVSKINANERFSVYVVIPM 614 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~-~a~~ia~~~~~~~~v~V~IvlP~ 614 (852)
.-|...++..|+.|+.|..+. -|+..+ +.. +...+..+ .++|++++|+...
T Consensus 38 e~il~~Li~~l~k~~ef~IsV--aFit~s---------------G~sll~~~L~d~--~~Kgvkgkilts~ 89 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV--AFITES---------------GLSLLFDLLLDL--VNKGVKGKILTSD 89 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE--EEeeCc---------------cHHHHHHHHHHH--hcCCceEEEeccc
Confidence 468899999999999998887 466432 112 22223333 5788999999974
No 197
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=68.52 E-value=8.8 Score=45.30 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=32.0
Q ss_pred EEEEeeEEEEc-------ceeEEecCcCcccCCCCCCCCceeEEEEecCc
Q 045478 700 IYVHAKGMIVD-------DEYVIMGSANINQRSLEGSRDTEIAMGAYQPH 742 (852)
Q Consensus 700 iyvHSKlmIVD-------D~~~iIGSANln~RSm~~n~DsEi~v~i~d~~ 742 (852)
.-+|||+++|= -+|+-+|+-|.|..+-..- |.+++..-|+.
T Consensus 436 lKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriY--TD~sl~Tad~~ 483 (696)
T COG0855 436 LKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLY--TDLSLLTADPE 483 (696)
T ss_pred eeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeee--eechhccCCHH
Confidence 47999999984 3689999999999987755 66666655554
No 198
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=67.52 E-value=43 Score=33.70 Aligned_cols=98 Identities=7% Similarity=-0.012 Sum_probs=50.7
Q ss_pred cEEEEEE--CCee--EEEeeeecCCCCCeeeeEEEEeecC----CCceEEEEEEecCCCC--CceeeeEeeeceeccCCC
Q 045478 80 PYVSVCL--SGAT--VAQTRVISNCENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG--AELIGVVQIPVEKILCGN 149 (852)
Q Consensus 80 pYv~v~l--~~~~--~~rT~vi~~s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~--~~~iG~~~i~l~~l~~g~ 149 (852)
.||++.+ ++.. .-+|+....+.++.|||-..|++.- ..+.+.|+|++....+ ....|.- +........
T Consensus 32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~ 109 (178)
T cd08399 32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKH 109 (178)
T ss_pred EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccc--ccccccccc
Confidence 4666543 3331 1266666667789999988887543 3467899999853211 1122211 111111111
Q ss_pred ceeeee--eeccCCCCCCCCCCEEEEEEEeeecC
Q 045478 150 EVDDWF--PIAGSYGKNLKPFPQLHVSMQYKPIG 181 (852)
Q Consensus 150 ~~~~w~--~L~~~~g~~~k~~g~l~l~l~f~~~~ 181 (852)
..-+|. .|++.++. =..|...|.++-.|..
T Consensus 110 ~~l~wvn~~LFD~~~~--Lr~G~~~L~~W~~~~~ 141 (178)
T cd08399 110 QLLYYVNLLLIDHRFL--LRTGEYVLHMWQISGK 141 (178)
T ss_pred ceEEEEEEEEEcCCCc--eecCCEEEEEecCCCc
Confidence 122343 34454443 2457777777766643
No 199
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=66.06 E-value=14 Score=42.92 Aligned_cols=59 Identities=31% Similarity=0.497 Sum_probs=47.7
Q ss_pred eEEEeeeecCCCCCeeeeEEEEeecCC-CceEEEEEEecCCC-----CCceeeeEeeeceeccCC
Q 045478 90 TVAQTRVISNCENPFWDEHFCVPVAHS-VVNLEFHVKDNDIL-----GAELIGVVQIPVEKILCG 148 (852)
Q Consensus 90 ~~~rT~vi~~s~nP~WnE~f~~~~~~~-~~~l~~~V~d~d~~-----~~~~iG~~~i~l~~l~~g 148 (852)
.++||.++.+..||.|-+.|.+...-. .+.+.|++.|-+.. ..+++|++...+.++.+-
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 467999999999999999998876543 46678999886543 268999999999888754
No 200
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=65.85 E-value=12 Score=45.58 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=74.8
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISN 99 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~ 99 (852)
++.|.|++.+++|..|.+. ...||+..++. ...++|+++.+
T Consensus 756 l~ygflh~~vhsat~lkqs-----------------------------------~~lY~Td~v~e~~~~~s~~st~~iad 800 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQS-----------------------------------RNLYCTDEVDEFGYFVSKASTRVIAD 800 (1112)
T ss_pred ccccceeeeeccccccccc-----------------------------------cceeeehhhhhhccccccccceeeec
Confidence 6789999999999998742 46788877653 24489999999
Q ss_pred CCCCeeeeEEEEeecCCCceEEEEEEec-----------CCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCC
Q 045478 100 CENPFWDEHFCVPVAHSVVNLEFHVKDN-----------DILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPF 168 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~~~~l~~~V~d~-----------d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~ 168 (852)
+..|.||+.|++++-...+-- +...++ ....+...|+.++.++--... -..|+.-..... +
T Consensus 801 T~~~~~npe~hv~~~~sqS~r-~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~--d~d~~t~v~~~n-----~ 872 (1112)
T KOG4269|consen 801 TAEPQWNPEKHVPVIESQSSR-LEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHH--DADWYTQVIDMN-----G 872 (1112)
T ss_pred ccCCCCChhcccchhhccccc-hhhhcccchHHHhhhccchhhcccccccccccCccccc--cccCccChhhhc-----C
Confidence 999999999999876532111 222221 111245666666655422211 124664433222 3
Q ss_pred CEEEEEEEeeecCCcc
Q 045478 169 PQLHVSMQYKPIGQIP 184 (852)
Q Consensus 169 g~l~l~l~f~~~~~~~ 184 (852)
..+...|+|.+.....
T Consensus 873 ~~ve~~v~~ssss~Ss 888 (1112)
T KOG4269|consen 873 IVVETSVKFSSSSTSS 888 (1112)
T ss_pred cceeeeEEeccccccc
Confidence 4678888988876543
No 201
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=65.16 E-value=51 Score=38.61 Aligned_cols=118 Identities=13% Similarity=0.233 Sum_probs=79.5
Q ss_pred eeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCC
Q 045478 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCEN 102 (852)
Q Consensus 23 ~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~n 102 (852)
+.|.=.++|.|.+.++|+..... .=.||++.+.+.+ ..|.-. ....
T Consensus 337 v~la~smevvvmevqglksvapn--------------------------------rivyctmevegek-lqtdqa-eask 382 (1218)
T KOG3543|consen 337 VSLALSMEVVVMEVQGLKSVAPN--------------------------------RIVYCTMEVEGEK-LQTDQA-EASK 382 (1218)
T ss_pred eeEEeeeeEEEeeeccccccCCC--------------------------------eeEEEEEEecccc-cccchh-hhcC
Confidence 34555688999999999754321 1359999999876 344432 3457
Q ss_pred CeeeeEEEEeecCCCceEEEEEEecCC--C--CCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 103 PFWDEHFCVPVAHSVVNLEFHVKDNDI--L--GAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 103 P~WnE~f~~~~~~~~~~l~~~V~d~d~--~--~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|.|.-.=.|...|+..-+.+.++.+.. + .|.-+|++-+.-.. .......|+.+.-++..+ ...-+|++.++.
T Consensus 383 p~wgtqgdfstthplpvvkvklftestgvlaledkelgrvil~ptp--ns~ks~ewh~mtvpknsq-dqdlkiklavrm 458 (1218)
T KOG3543|consen 383 PKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELGRVILQPTP--NSAKSPEWHTMTVPKNSQ-DQDLKIKLAVRM 458 (1218)
T ss_pred CCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhCeEEEecCC--CCcCCccceeeecCCCCc-CccceEEEEEec
Confidence 999998888888888888888876542 2 37789998774332 223345799987665543 445566666663
No 202
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=64.33 E-value=17 Score=37.03 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=39.8
Q ss_pred eEEEeeeecCCCCCeeeeEEEEeecC---CCceEEEEEEecCCC-----CCceeeeEeeece
Q 045478 90 TVAQTRVISNCENPFWDEHFCVPVAH---SVVNLEFHVKDNDIL-----GAELIGVVQIPVE 143 (852)
Q Consensus 90 ~~~rT~vi~~s~nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~-----~~~~iG~~~i~l~ 143 (852)
.-++|-|.....+|.|+|++.+.++. ....|.|+++..... ....+|-+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 34789998889999999999998875 356778888663321 1357888888774
No 203
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=62.99 E-value=53 Score=30.09 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=48.8
Q ss_pred EEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCC--------CceEEEEEEecCCCCCceeeeEeeeceeccC--CCc
Q 045478 81 YVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHS--------VVNLEFHVKDNDILGAELIGVVQIPVEKILC--GNE 150 (852)
Q Consensus 81 Yv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~--------~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~--g~~ 150 (852)
||++++-.-...-|.++. +.+|..|-+-++.+.-. ...+.+++...-......||.++|++.++.. ++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 455555443335666665 78999998877776543 2456777766443236799999999999984 335
Q ss_pred eeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 151 VDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 151 ~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
+.+-..|.+..|+ .-|.|...++.
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEe
Confidence 7777788776664 56777776664
No 204
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=62.76 E-value=8.5 Score=43.71 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=37.8
Q ss_pred eeeeEeeecee-ccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeecCCcc
Q 045478 134 LIGVVQIPVEK-ILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIP 184 (852)
Q Consensus 134 ~iG~~~i~l~~-l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~~~~ 184 (852)
++|.+.||++. +..|...+.|+++.+...+. .+.|.| ++++|....-.|
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~~VLp 50 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEENFVLP 50 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeeceecc
Confidence 58999999999 55778899999998876654 455677 788888765444
No 205
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=59.80 E-value=21 Score=37.44 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecC
Q 045478 544 DKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPM 614 (852)
Q Consensus 544 e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~ 614 (852)
...|.+-..++|++|++.|||..+.=. -..+...|.+|. .+||+|.+++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~~~------------------l~~l~~~L~~a~--~rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPPEF------------------LEELRDELEEAV--DRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-GGG------------------HHHHHHHHHHHH--HTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCHHH------------------HHHHHHHHHHHH--HCCCEEEEEEeC
Confidence 367888899999999999999864311 124455565553 477999999983
No 206
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=58.15 E-value=5.1 Score=46.43 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=27.0
Q ss_pred eeEEEEeeEEEEcc-------eeEEecCcCcccCCCCCC----------CCceeEEEE
Q 045478 698 FMIYVHAKGMIVDD-------EYVIMGSANINQRSLEGS----------RDTEIAMGA 738 (852)
Q Consensus 698 ~~iyvHSKlmIVDD-------~~~iIGSANln~RSm~~n----------~DsEi~v~i 738 (852)
..+..|+|+++... .|+++|||||-.=.+. . +..|++|++
T Consensus 345 ~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG-~~~~~~~~l~i~nyElGVl~ 401 (443)
T PF06087_consen 345 SRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWG-KRSKNGSQLSIRNYELGVLF 401 (443)
T ss_dssp TTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEE
T ss_pred CCcCcceEEEEEecCCCCCccceEEeCcccCCHHHhc-ccccCCceeeecceEEEEEE
Confidence 34688999999986 5999999999754432 2 669999998
No 207
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=52.45 E-value=70 Score=28.71 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCcEEEEEE--CCee---EEEeeeecCCCCCeeeeEEEEeecC----CCceEEEEEEec
Q 045478 78 SNPYVSVCL--SGAT---VAQTRVISNCENPFWDEHFCVPVAH----SVVNLEFHVKDN 127 (852)
Q Consensus 78 sdpYv~v~l--~~~~---~~rT~vi~~s~nP~WnE~f~~~~~~----~~~~l~~~V~d~ 127 (852)
++.||++.+ ++.. .-.|+.+.-+..+.|||-..|++.- ..+.+.|++++.
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 478888865 4432 1256655556679999998887542 246678999874
No 208
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=51.47 E-value=44 Score=33.49 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=35.6
Q ss_pred EEeeeecCCCCCeeeeEEEEeecCC---CceEEEEEEecCCC-----C-CceeeeEeeecee
Q 045478 92 AQTRVISNCENPFWDEHFCVPVAHS---VVNLEFHVKDNDIL-----G-AELIGVVQIPVEK 144 (852)
Q Consensus 92 ~rT~vi~~s~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~-----~-~~~iG~~~i~l~~ 144 (852)
.+|-+..+ .+|.|+|+|.+.++.. ...|.|++++.... . ...+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999998653 45678888875422 2 4677877777754
No 209
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=49.05 E-value=55 Score=32.96 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=36.2
Q ss_pred eEEEeeeecCCCCCeeeeEEEEeecCC---CceEEEEEEecCCCC-------CceeeeEeeec
Q 045478 90 TVAQTRVISNCENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-------AELIGVVQIPV 142 (852)
Q Consensus 90 ~~~rT~vi~~s~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-------~~~iG~~~i~l 142 (852)
..+.|.|...+.+|.|+|++.+.++-. ...+.|+.++-+... ...+|-+.+||
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL 116 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPL 116 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEee
Confidence 347889999999999999999988753 345677777633211 23455555555
No 210
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=46.41 E-value=1.5e+02 Score=32.54 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=61.7
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCC--eeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeecee-ccCC-Cceee
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENP--FWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEK-ILCG-NEVDD 153 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP--~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~-l~~g-~~~~~ 153 (852)
-..|+.++.+... .+|..+.-+..- .-.|...+.+..-..++.+.++-....+..-||.+.|.+.. +..+ -+-..
T Consensus 74 khiyIef~~Gr~d-~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYD-FTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceE-EEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 3568999988776 455444322222 23355666666666788999999888888899999998854 3333 34568
Q ss_pred eeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 154 WFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 154 w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
||.+ .+.|+ ..-++.|.|.-+
T Consensus 153 Wy~c-~kDGq-----~~cRIqLSFhKL 173 (508)
T PTZ00447 153 WFVC-FKDGQ-----EICKVQMSFYKI 173 (508)
T ss_pred eEEE-ecCCc-----eeeeEEEEehhh
Confidence 9998 44553 233444555443
No 211
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=40.71 E-value=97 Score=31.38 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=30.4
Q ss_pred eEEEeeeecCCCCCeeeeEEEEeecC---CCceEEEEEEecC
Q 045478 90 TVAQTRVISNCENPFWDEHFCVPVAH---SVVNLEFHVKDND 128 (852)
Q Consensus 90 ~~~rT~vi~~s~nP~WnE~f~~~~~~---~~~~l~~~V~d~d 128 (852)
..+.|.|...+.+|.|+|++.+.++- ....+.|+.++-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 34789999999999999999998764 3455677777643
No 212
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=26.43 E-value=47 Score=38.57 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=23.1
Q ss_pred EEEEeeEEEE---cc-eeEEecCcCcccCCCCCCCCceeEEEE
Q 045478 700 IYVHAKGMIV---DD-EYVIMGSANINQRSLEGSRDTEIAMGA 738 (852)
Q Consensus 700 iyvHSKlmIV---DD-~~~iIGSANln~RSm~~n~DsEi~v~i 738 (852)
.--|||+||. |+ --++|.||||-..-+.. -|=++-+
T Consensus 100 g~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~~---~~q~vw~ 139 (443)
T PF06087_consen 100 GTHHSKMMLLFYEDGSLRVVIPTANLTPYDWNN---KTQGVWI 139 (443)
T ss_dssp --B--EEEEEEETTCEEEEEEESS-BSHHHHCS---SB-EEEE
T ss_pred ccccceeEEEEeCCccEEEEEECCCCCHHHHCC---cceeEEE
Confidence 3689999998 67 78999999998877742 3445544
No 213
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=25.72 E-value=1.4e+02 Score=33.65 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 045478 546 SIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWP 616 (852)
Q Consensus 546 sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~p 616 (852)
..++.+.+.|.+||+.|+|.+-|.-.. ..+++..+..++..++.++|-|++.-.-
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 467788999999999999999888521 4678899999999999999999998543
No 214
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=25.62 E-value=56 Score=35.59 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=50.2
Q ss_pred HHHHHHHHhccceEEEEEe--ecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccccc
Q 045478 243 EEICHAVLEARHLIYIIGW--SVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGV 320 (852)
Q Consensus 243 ~~l~~aI~~Ak~~I~I~~w--~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~ 320 (852)
+.+.+.++.|++.|-..+- +.+.++-+. .+...++.++|+.++++|.+++|+|-+.. |..
T Consensus 96 ~~~i~~~~~a~~~ia~~~a~~i~dg~~IlT--------h~~S~~v~~~l~~A~~~~k~~~V~VtESR-----P~~----- 157 (301)
T COG1184 96 QEFIDRVEKAKERIAEIGAERIHDGDVILT--------HSFSKTVLEVLKTAADRGKRFKVIVTESR-----PRG----- 157 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCEEEE--------ecCcHHHHHHHHHhhhcCCceEEEEEcCC-----Ccc-----
Confidence 4456667777776633221 112332222 13457999999999999998888884543 211
Q ss_pred ccCCcHHHHhhhcCCCCEEEe
Q 045478 321 MQTHDEETRKFFKHSSVNCVL 341 (852)
Q Consensus 321 ~~~~~~~~~~~l~~~gv~v~~ 341 (852)
....+.+.|++.||++.+
T Consensus 158 ---eG~~~ak~L~~~gI~~~~ 175 (301)
T COG1184 158 ---EGRIMAKELRQSGIPVTV 175 (301)
T ss_pred ---hHHHHHHHHHHcCCceEE
Confidence 135778889999998875
No 215
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=25.00 E-value=2.2e+02 Score=26.70 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCC-CCCCCCCcchHHHHHHHhhhcCCeEEE
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPT-KPLPSFGELSFGELLKHKSQEGVRVLL 301 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~-~~~~~~~~~~l~~~L~~~a~~GV~Vri 301 (852)
+++|..++=|+..|.---..+-|+.....+|++... ...-.....+|.++.+.+.+.||++++
T Consensus 17 ~r~ya~f~~A~~a~smg~dV~iF~t~dG~~l~~K~~~ekik~~~~~~l~~~~~~a~e~GVk~yv 80 (120)
T COG2044 17 ERAYAPFVMATAAASMGYDVTIFFTMDGVTLVKKKVAEKIKHPNFPPLEELIKQAIEAGVKIYV 80 (120)
T ss_pred HHHHhHHHHHHHHHhCCCceEEEEEeccceeeeecchhhhcCCCCCCHHHHHHHHHHcCCEEEE
Confidence 677877777776665444444444455666665321 111111237999999999999988775
No 216
>PF13289 SIR2_2: SIR2-like domain
Probab=23.25 E-value=2.8e+02 Score=25.80 Aligned_cols=65 Identities=23% Similarity=0.485 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhc-CC---eEEEEEeCCCcccccccc
Q 045478 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQE-GV---RVLLLIWDDKTSHDNLFI 315 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~-GV---~VriLvwD~~~s~~~~~~ 315 (852)
..|...+.++..++..|+| ||++.+ ..+..+|..+.+. |- ++++++.+..
T Consensus 74 ~~~~~~l~~~l~~~~~lfi-Gys~~D-----------------~~i~~~l~~~~~~~~~~~~~~~~v~~~~~-------- 127 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFI-GYSFND-----------------PDIRQLLRSALENSGKSRPRHYIVIPDPD-------- 127 (143)
T ss_pred HHHHHHHHHHHcCCCEEEE-EECCCC-----------------HHHHHHHHHHHHhccCCCccEEEEEcCCc--------
Confidence 3455666666666766655 998642 3555666555443 33 5777763322
Q ss_pred cccccccCCcHHHHhhhcCCCCEE
Q 045478 316 KTEGVMQTHDEETRKFFKHSSVNC 339 (852)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~gv~v 339 (852)
.+...+++++.||++
T Consensus 128 ---------~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 128 ---------DENEREFLEKYGIEV 142 (143)
T ss_pred ---------hHHHHHHHHHcCCEE
Confidence 134566777788875
No 217
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=21.66 E-value=3.1e+02 Score=26.91 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=32.0
Q ss_pred ccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEec
Q 045478 558 AQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIP 613 (852)
Q Consensus 558 Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP 613 (852)
.|+.||||+-|-. |.+...| ++..|...+++...+....+|+-++-
T Consensus 81 ~k~~iYleDlyV~------e~yR~kG----~Gs~Ll~~va~~A~~~G~~rv~w~vl 126 (163)
T KOG3216|consen 81 GKQGIYLEDLYVR------EQYRGKG----IGSKLLKFVAEEADKLGTPRVEWVVL 126 (163)
T ss_pred ccceEEEEeeEec------chhcccC----hHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4688999998887 4444444 25566666666655667789998886
No 218
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=21.42 E-value=1.6e+02 Score=31.26 Aligned_cols=49 Identities=29% Similarity=0.250 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEe
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIW 304 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvw 304 (852)
...-+.+.+.|++|+++|.++.+ .+ .-..+.+.|..+.+|||.|.+++.
T Consensus 119 ~~i~~~~~e~i~~a~~ei~~~~~---~e--------------~~~~l~~~l~~~~~rgv~v~i~~~ 167 (247)
T COG1378 119 EEIIEKIKEVINEAEKEIIIVLP---YE--------------IFKELKEPLIRALKRGVRVLILVF 167 (247)
T ss_pred HHHHHHHHHHHHhhhcEEEEEeC---HH--------------HHHHhHHHHHHHHHccCeEEEEec
Confidence 56678889999999999999875 11 125888999999999999999983
Done!