BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045479
         (482 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P21771|RT28_YEAST 37S ribosomal protein S28, mitochondrial OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=MRPS28 PE=1
           SV=1
          Length = 286

 Score = 33.5 bits (75), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 25/125 (20%)

Query: 291 EEFPKESLQAEKRACALVREVLGMMVEKQTLIDHLTHFRKDFGLSNNLRAM------ILR 344
           E FP ++  +E +A         M V  Q + +H+   RKDF  + NLR +      ILR
Sbjct: 165 ERFPGDTGSSEVQAAC-------MTVRIQNMANHIKEHRKDFANTRNLRILVQQRQAILR 217

Query: 345 H-----PELFY--VSPKGIRNSVQLVEEFDEKGVLLKRDETLLIKEKLMELVREGKKMRR 397
           +     PE +Y  +   G+ N   + +EF+     ++  E     +K+  L+R+ KK+  
Sbjct: 218 YLKRDNPEKYYWTIQKLGL-NDAAITDEFNMDRRYMQDYE--FFGDKI--LIRDSKKVAN 272

Query: 398 ERRKQ 402
           ++RK+
Sbjct: 273 QKRKE 277


>sp|Q29HT0|UBA5_DROPS Ubiquitin-like modifier-activating enzyme 5 OS=Drosophila
           pseudoobscura pseudoobscura GN=GA14526 PE=3 SV=1
          Length = 397

 Score = 33.1 bits (74), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)

Query: 273 FLIKFGELPDVCPYNTSSEEFPKESL----QAEKRACALVREVLG-----MMVEKQTLID 323
           +L+ FGE+ D   YN  ++ FPK +L    Q + R C L ++        ++V+++   D
Sbjct: 265 YLLNFGEVSDYLGYNALNDFFPKMTLKPNPQCDDRNCLLRQKEFQARPKPVVVQEEAPTD 324

Query: 324 HLTHFRKDFGL 334
              H   D+G+
Sbjct: 325 EPLHASNDWGI 335


>sp|B4GYC7|UBA5_DROPE Ubiquitin-like modifier-activating enzyme 5 OS=Drosophila
           persimilis GN=GL19893 PE=3 SV=1
          Length = 384

 Score = 33.1 bits (74), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)

Query: 273 FLIKFGELPDVCPYNTSSEEFPKESL----QAEKRACALVREVLG-----MMVEKQTLID 323
           +L+ FGE+ D   YN  ++ FPK +L    Q + R C L ++        ++V+++   D
Sbjct: 252 YLLNFGEVSDYLGYNALNDFFPKMTLKPNPQCDDRNCLLRQKEFQARPKPVVVQEEAPTD 311

Query: 324 HLTHFRKDFGL 334
              H   D+G+
Sbjct: 312 EPLHASNDWGI 322


>sp|P91424|TFB1M_CAEEL Dimethyladenosine transferase 1, mitochondrial OS=Caenorhabditis
           elegans GN=T03F1.7 PE=3 SV=2
          Length = 367

 Score = 32.3 bits (72), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 420 EVDELDNNDDDGFENLFESADSDLDYHFDDDGSFELGDHWEN 461
           +V E+DN      ++L E+ADS +  H  D    E+GD W+N
Sbjct: 77  DVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKN 118


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,655,697
Number of Sequences: 539616
Number of extensions: 7563180
Number of successful extensions: 21694
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 21575
Number of HSP's gapped (non-prelim): 106
length of query: 482
length of database: 191,569,459
effective HSP length: 121
effective length of query: 361
effective length of database: 126,275,923
effective search space: 45585608203
effective search space used: 45585608203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)