Query 045479
Match_columns 482
No_of_seqs 129 out of 189
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 46.3 7.3 0.00025 37.1 1.7 30 185-215 42-71 (270)
2 3m66_A Mterf3, mterf domain-co 33.3 24 0.00084 33.4 3.1 43 310-354 138-181 (270)
3 3rco_A Tudor domain-containing 27.1 80 0.0027 26.3 4.7 46 75-124 16-71 (89)
4 3eco_A MEPR; mutlidrug efflux 25.0 1.6E+02 0.0056 23.8 6.5 73 75-161 34-109 (139)
5 4fp9_B Mterf domain-containing 20.2 60 0.0021 32.6 3.2 41 311-353 140-181 (335)
6 3e98_A GAF domain of unknown f 16.4 1.2E+02 0.004 29.2 4.2 88 107-199 34-137 (252)
7 3s93_A Tudor domain-containing 15.0 2.3E+02 0.0077 23.8 5.1 58 64-125 2-70 (102)
8 2ca6_A RAN GTPase-activating p 14.6 47 0.0016 32.1 0.8 16 109-124 114-129 (386)
9 3bro_A Transcriptional regulat 14.5 2.3E+02 0.0079 22.8 5.0 72 75-160 37-111 (141)
10 3nqo_A MARR-family transcripti 13.5 3.2E+02 0.011 23.9 6.0 71 77-161 46-119 (189)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=46.29 E-value=7.3 Score=37.10 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=23.3
Q ss_pred hhhHHHhhhhCCCCchhhhccccCCCCCeEE
Q 045479 185 LSKLVHLASDLGLLPNFRSRLCNDYPDKFKI 215 (482)
Q Consensus 185 L~kL~~lr~dLGLP~DF~~~lv~~yPd~Frv 215 (482)
..+++-+ .++|++.+-..+++.++|..|.-
T Consensus 42 ~~~l~fL-~~lG~~~~~i~~il~~~P~lL~~ 71 (270)
T 3m66_A 42 KQMLLFL-KDVGIEDNQLGAFLTKNHAIFSE 71 (270)
T ss_dssp HHHHHHH-HHHTCCGGGHHHHHHHCTTGGGS
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHhCChhhhC
Confidence 4456666 47999999989999889887754
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=33.25 E-value=24 Score=33.40 Aligned_cols=43 Identities=21% Similarity=0.435 Sum_probs=33.7
Q ss_pred HHhhcchhhHhhhhHHHhhHHhhCCcHH-HHHHHhhCCCcEEEeec
Q 045479 310 EVLGMMVEKQTLIDHLTHFRKDFGLSNN-LRAMILRHPELFYVSPK 354 (482)
Q Consensus 310 ELLSLTveKr~~v~~L~hFr~efgLp~k-~~~~l~RHPgIFYvS~K 354 (482)
.+|.+.+++- ..++.-|.+++|++.+ +..++.++|.|+..|.+
T Consensus 138 ~il~~s~e~~--~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~ 181 (270)
T 3m66_A 138 RLLTGSLEPV--KENMKVYRLELGFKHNEIQHMITRIPKMLTANKM 181 (270)
T ss_dssp GGGTSCSHHH--HHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH
T ss_pred cceeechHHH--HHHHHHHHHHcCCCHHHHHHHHHhCChhheecHH
Confidence 6777777752 4556667889999986 67799999999999963
No 3
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=27.09 E-value=80 Score=26.30 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCeechhhhhhcc----------ccCCCCCcchHhHHHhhCCceeEEec
Q 045479 75 QKLKTLLLSKPKHYIPIHILSKCR----------SYLSLPKLKSIRSMIHRYPMIFEVFA 124 (482)
Q Consensus 75 ~~lk~lI~s~P~~~lpl~~L~k~r----------~~LgL~~~~~v~~FlrrYP~iF~~f~ 124 (482)
.-|+.+|.|.|++ ++++.|.+-. ++||.. .+.+||+--|.++.+-.
T Consensus 16 k~iRslL~S~k~g-vtl~~L~~DYr~l~G~~iP~r~lGy~---sl~~fL~siPdvv~~~~ 71 (89)
T 3rco_A 16 KMLRAVLQSHKNG-VALPRLQGEYRSLTGDWIPFKQLGFP---TLEAYLRSVPAVVRIET 71 (89)
T ss_dssp HHHHHHHHTCTTC-EEHHHHHHHHHHHHSSCCCTTTTTCS---SHHHHHHTCTTTEEEEE
T ss_pred HHHHHHhhcCCCC-CCHHHHHHHHHHHhCCcCChhhhCcc---cHHHHHhcccCeEEEEe
Confidence 3567888888765 7888886432 456776 68999999999999643
No 4
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=24.98 E-value=1.6e+02 Score=23.80 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCCCeechhhhhhccccCCCCCcchHhHH---HhhCCceeEEeccCCCCCCCCCCCCCccceeecCHHHHH
Q 045479 75 QKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSM---IHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAA 151 (482)
Q Consensus 75 ~~lk~lI~s~P~~~lpl~~L~k~r~~LgL~~~~~v~~F---lrrYP~iF~~f~~p~~~~P~~~~~~~~~~~vrLT~~A~~ 151 (482)
..+...|..+|.+.+++..|.+. +|++. -.+.+. |.+---| +...+|. ......+.||++|.+
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~---l~~~~-~tvs~~l~~Le~~Gli-~r~~~~~---------D~R~~~~~LT~~G~~ 99 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKA---LQRTG-PTVSNLLRNLERKKLI-YRYVDAQ---------DTRRKNIGLTTSGIK 99 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHH---HTCCH-HHHHHHHHHHHHTTSE-EEEECCC-----------CCEEEEECHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHH---hCCCc-ccHHHHHHHHHHCCCE-eecCCCC---------CCCeeeeEECHHHHH
Confidence 34555666777667888888764 78874 234433 3333333 3333332 124568999999999
Q ss_pred HHHHHHHHHH
Q 045479 152 LAAQEISLKS 161 (482)
Q Consensus 152 L~~eE~~v~~ 161 (482)
+..+-.....
T Consensus 100 ~~~~~~~~~~ 109 (139)
T 3eco_A 100 LVEAFTSIFD 109 (139)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887555543
No 5
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=20.19 E-value=60 Score=32.64 Aligned_cols=41 Identities=7% Similarity=0.195 Sum_probs=28.8
Q ss_pred HhhcchhhHhhhhHHHhhHHhhCCcH-HHHHHHhhCCCcEEEee
Q 045479 311 VLGMMVEKQTLIDHLTHFRKDFGLSN-NLRAMILRHPELFYVSP 353 (482)
Q Consensus 311 LLSLTveKr~~v~~L~hFr~efgLp~-k~~~~l~RHPgIFYvS~ 353 (482)
+|++.+++ ...++..|++.+|++. .+..|+.++|.|+..|.
T Consensus 140 lL~~s~e~--i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~ 181 (335)
T 4fp9_B 140 IFTMRQQD--INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL 181 (335)
T ss_dssp GGTSCHHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH
T ss_pred hhccChHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH
Confidence 44444443 2455667888899865 56778999999998884
No 6
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=16.39 E-value=1.2e+02 Score=29.18 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=30.8
Q ss_pred chHhHHHhhCCceeEEeccCCC--CCCCCCCCCCccceeecCHHHHHHHHHHHHHHHh----------hhHHHHHHHHHH
Q 045479 107 KSIRSMIHRYPMIFEVFAVPMP--PTPLNATKSGYQQCVRLTPAAAALAAQEISLKSA----------ISNTLANKLQKL 174 (482)
Q Consensus 107 ~~v~~FlrrYP~iF~~f~~p~~--~~P~~~~~~~~~~~vrLT~~A~~L~~eE~~v~~~----------~e~~~v~rLrKL 174 (482)
..|..||+.+|..|..+..--. .+|. +. .-.|.|.+...+..+++..-+++ ....+..++.+|
T Consensus 34 ~~V~~yL~~~PdFf~~~~~Ll~~L~lph---~~--~~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l 108 (252)
T 3e98_A 34 EQVAAYLSQHPEFFVEHDELIPELRIPH---QP--GDAVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRL 108 (252)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhhCHHHHHhCCCCC---CC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999887643211 1121 11 13588888888877765544422 112233444443
Q ss_pred ---HhccCCce-echhhHHHhhhhCCCCc
Q 045479 175 ---LMLSSHRR-LLLSKLVHLASDLGLLP 199 (482)
Q Consensus 175 ---LMMS~~rr-LpL~kL~~lr~dLGLP~ 199 (482)
|+-+.+-. ++-.-...++.+||+|.
T Consensus 109 ~l~LL~a~sl~~l~~~L~~~l~~~F~l~~ 137 (252)
T 3e98_A 109 VLDLLDATSLEDVVSTVEDSLRHEFQVPY 137 (252)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHTSCCSE
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHCCCCe
Confidence 33333333 33333367777888875
No 7
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=14.96 E-value=2.3e+02 Score=23.84 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=39.9
Q ss_pred HHHHhcchhHHH-HHHHHHhcCCCCeechhhhhhcc----------ccCCCCCcchHhHHHhhCCceeEEecc
Q 045479 64 HIVTHNRTRFVQ-KLKTLLLSKPKHYIPIHILSKCR----------SYLSLPKLKSIRSMIHRYPMIFEVFAV 125 (482)
Q Consensus 64 ~v~rek~lr~v~-~lk~lI~s~P~~~lpl~~L~k~r----------~~LgL~~~~~v~~FlrrYP~iF~~f~~ 125 (482)
.+++++-+..|- -|+.+|.|.+ +.++++.|.+-. +.||.. .+.+||+--|.++.+...
T Consensus 2 ~~~~~~~l~~vkk~irslLiS~K-~gvtl~~L~~dYr~~~G~~iP~r~lGy~---sl~~fL~sipdvv~~~~~ 70 (102)
T 3s93_A 2 MSEQERIQECLRKEIRSLLISTK-DGLSPQELEKEYLLMVGNHLPLRILGYR---STMELVLDMPDVVRVCPG 70 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSS-SCBCHHHHHHHHHHHHSSCCCTGGGTCS---SHHHHHHTCTTTEEEECC
T ss_pred CccHHHHHHHHHHHHHHhheeCC-CCcCHHHHHHHHHHHcCCcCCchhcCcC---CHHHHHHcCCCeEEEEec
Confidence 355666665444 4566777865 477888886432 345665 689999999999987543
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=14.58 E-value=47 Score=32.15 Aligned_cols=16 Identities=0% Similarity=0.175 Sum_probs=11.0
Q ss_pred HhHHHhhCCceeEEec
Q 045479 109 IRSMIHRYPMIFEVFA 124 (482)
Q Consensus 109 v~~FlrrYP~iF~~f~ 124 (482)
+...+...|.+=.+.-
T Consensus 114 l~~~l~~~~~L~~L~L 129 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYL 129 (386)
T ss_dssp HHHHHHHCTTCCEEEC
T ss_pred HHHHHHhCCCCCEEEC
Confidence 5567777887766653
No 9
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=14.54 E-value=2.3e+02 Score=22.81 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCCCeechhhhhhccccCCCCCcchHhHH---HhhCCceeEEeccCCCCCCCCCCCCCccceeecCHHHHH
Q 045479 75 QKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSM---IHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAA 151 (482)
Q Consensus 75 ~~lk~lI~s~P~~~lpl~~L~k~r~~LgL~~~~~v~~F---lrrYP~iF~~f~~p~~~~P~~~~~~~~~~~vrLT~~A~~ 151 (482)
..+...|..+|++.+++..|.+. +|++. -.+... |.+---| +...+|.. .....+.||++|.+
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~---l~~~~-~tvs~~l~~Le~~Gli-~r~~~~~d---------~R~~~i~lT~~G~~ 102 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESE---FSIKS-STATVLLQRMEIKKLL-YRKVSGKD---------SRQKCLKLTKKANK 102 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHH---HTCCH-HHHHHHHHHHHHTTSE-EEEECSSC---------TTSEEEEECHHHHT
T ss_pred HHHHHHHHHCCCCCcCHHHHHHH---HCCCc-chHHHHHHHHHHCCCE-EeeCCCcC---------CCeeeeEECHHHHH
Confidence 34555666777657888888764 78874 233333 3333333 33333321 23457999999998
Q ss_pred HHHHHHHHH
Q 045479 152 LAAQEISLK 160 (482)
Q Consensus 152 L~~eE~~v~ 160 (482)
+..+-..+.
T Consensus 103 ~~~~~~~~~ 111 (141)
T 3bro_A 103 LETIILSYM 111 (141)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887655544
No 10
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=13.53 E-value=3.2e+02 Score=23.91 Aligned_cols=71 Identities=10% Similarity=0.122 Sum_probs=43.5
Q ss_pred HHHHHhcCCCCeechhhhhhccccCCCCCcchHhHH---HhhCCceeEEeccCCCCCCCCCCCCCccceeecCHHHHHHH
Q 045479 77 LKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSM---IHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALA 153 (482)
Q Consensus 77 lk~lI~s~P~~~lpl~~L~k~r~~LgL~~~~~v~~F---lrrYP~iF~~f~~p~~~~P~~~~~~~~~~~vrLT~~A~~L~ 153 (482)
+...|...|++.+++..|.+. +|++. -.+.+. |.+---|=.. ..|. ......+.||++|.+++
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~---l~is~-~tvs~~l~~Le~~GlV~r~-~~~~---------DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARK---MGTSK-QNINRLVANLEKNGYVDVI-PSPH---------DKRAINVKVTDLGKKVM 111 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHH---HTSCH-HHHHHHHHHHHHTTSEEEE-ECSS---------CSSCEEEEECHHHHHHH
T ss_pred HHHHHHhccCCCcCHHHHHHH---HCCCH-HHHHHHHHHHHHCCCEEec-cCCC---------CCCeeEEEECHHHHHHH
Confidence 344556667778888888764 78884 234333 3444444333 3332 12456899999999998
Q ss_pred HHHHHHHH
Q 045479 154 AQEISLKS 161 (482)
Q Consensus 154 ~eE~~v~~ 161 (482)
.+-.....
T Consensus 112 ~~~~~~~~ 119 (189)
T 3nqo_A 112 VTCSRTGI 119 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87555543
Done!