Query 045479
Match_columns 482
No_of_seqs 129 out of 189
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 03:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045479.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045479hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 32.2 34 0.0025 26.6 5.6 74 75-161 32-107 (135)
2 d1sfka_ a.190.1.1 (A:) Flavivi 14.1 28 0.002 26.4 1.1 19 315-333 47-65 (73)
3 d2frha1 a.4.5.28 (A:102-216) P 9.7 2.5E+02 0.018 21.0 5.8 65 78-155 39-105 (115)
4 d1hsja1 a.4.5.28 (A:373-487) S 9.5 3.2E+02 0.024 20.4 6.5 69 76-158 36-107 (115)
5 d1gpma1 c.26.2.1 (A:208-404) G 9.3 69 0.005 25.1 2.2 23 321-346 173-195 (197)
6 d2fbka1 a.4.5.28 (A:8-179) Tra 8.9 3E+02 0.022 21.9 6.4 65 82-160 73-140 (172)
7 d1s3ja_ a.4.5.28 (A:) Putative 8.8 2.3E+02 0.017 21.6 5.3 22 139-160 89-110 (143)
8 d2a61a1 a.4.5.28 (A:5-143) Tra 8.2 1.9E+02 0.014 22.1 4.5 70 78-162 36-107 (139)
9 d1bl0a1 a.4.1.8 (A:9-62) MarA 7.5 1.5E+02 0.011 19.4 3.0 38 72-113 3-40 (54)
10 d2etha1 a.4.5.28 (A:1-140) Put 7.3 1.5E+02 0.011 22.7 3.4 68 78-161 38-108 (140)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=32.22 E-value=34 Score=26.59 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCCCeechhhhhhccccCCCCCc--chHhHHHhhCCceeEEeccCCCCCCCCCCCCCccceeecCHHHHHH
Q 045479 75 QKLKTLLLSKPKHYIPIHILSKCRSYLSLPKL--KSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAAL 152 (482)
Q Consensus 75 ~~lk~lI~s~P~~~lpl~~L~k~r~~LgL~~~--~~v~~FlrrYP~iF~~f~~p~~~~P~~~~~~~~~~~vrLT~~A~~L 152 (482)
..+..+|..+|++.++..+|.+. +|+... -++..-|.+-=-|-..-...+ .....+.||++|.++
T Consensus 32 ~~vL~~l~~~~~~~it~~ela~~---~~~~~~~vs~~l~~L~~~g~v~r~~~~~D----------~R~~~i~lT~~G~~~ 98 (135)
T d3broa1 32 MTIIDYLSRNKNKEVLQRDLESE---FSIKSSTATVLLQRMEIKKLLYRKVSGKD----------SRQKCLKLTKKANKL 98 (135)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEEECSSC----------TTSEEEEECHHHHTT
T ss_pred HHHHHHHHHcCCCCCCHHHHHHH---HCcCHhHHHHHHHHHHHHHHHHHHhhhhh----------hhhhhhcccHHHHHH
Confidence 35566677789999999998875 777741 133444555666655543222 235689999999998
Q ss_pred HHHHHHHHH
Q 045479 153 AAQEISLKS 161 (482)
Q Consensus 153 ~~eE~~v~~ 161 (482)
..+=.....
T Consensus 99 ~~~~~~~~~ 107 (135)
T d3broa1 99 ETIILSYMD 107 (135)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887555543
No 2
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=14.14 E-value=28 Score=26.35 Aligned_cols=19 Identities=47% Similarity=0.803 Sum_probs=17.2
Q ss_pred chhhHhhhhHHHhhHHhhC
Q 045479 315 MVEKQTLIDHLTHFRKDFG 333 (482)
Q Consensus 315 TveKr~~v~~L~hFr~efg 333 (482)
+|+|...+.+|..|++|.|
T Consensus 47 ~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 47 SVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 5889999999999999986
No 3
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=9.71 E-value=2.5e+02 Score=21.01 Aligned_cols=65 Identities=3% Similarity=-0.065 Sum_probs=40.0
Q ss_pred HHHHhcCCCCeechhhhhhccccCCCCCc--chHhHHHhhCCceeEEeccCCCCCCCCCCCCCccceeecCHHHHHHHHH
Q 045479 78 KTLLLSKPKHYIPIHILSKCRSYLSLPKL--KSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQ 155 (482)
Q Consensus 78 k~lI~s~P~~~lpl~~L~k~r~~LgL~~~--~~v~~FlrrYP~iF~~f~~p~~~~P~~~~~~~~~~~vrLT~~A~~L~~e 155 (482)
...|..+|++.+++..|.+. +++... -+++.-|.+---|-.. .+| ......++.||++|.+.+++
T Consensus 39 L~~l~~~~~~~~t~~~la~~---l~~~~~tvs~~i~~Le~~gli~r~-~~~---------~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 39 LTYISENKEKEYYLKDIINH---LNYKQPQVVKAVKILSQEDYFDKK-RNE---------HDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHHHTCCSEEEHHHHHHH---SSSHHHHHHHHHHHHHHTTSSCCB-CCS---------SSSCCCEEECCSHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHH---HCCCHhHHHHHHHHHHhhhhheee-ecc---------cCCceEEEEECHHHHHHHHH
Confidence 34567778888998888764 777741 1233444444444222 111 12356789999999988765
No 4
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=9.50 E-value=3.2e+02 Score=20.36 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=41.5
Q ss_pred HHHHHHhcCCCCeechhhhhhccccCCCCCcchHhHHH---hhCCceeEEeccCCCCCCCCCCCCCccceeecCHHHHHH
Q 045479 76 KLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMI---HRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAAL 152 (482)
Q Consensus 76 ~lk~lI~s~P~~~lpl~~L~k~r~~LgL~~~~~v~~Fl---rrYP~iF~~f~~p~~~~P~~~~~~~~~~~vrLT~~A~~L 152 (482)
.+..+|...+++.+++..|.+. +|+.. -.+.+.| .+---|=..-. | ......++.||++|.++
T Consensus 36 ~vL~~l~~~~~~~~t~~ela~~---l~~~~-~~vs~~i~~Le~~gli~r~~~-~---------~D~R~~~i~LT~~G~~~ 101 (115)
T d1hsja1 36 YILNHILRSESNEISSKEIAKC---SEFKP-YYLTKALQKLKDLKLLSKKRS-L---------QDERTVIVYVTDTQKAN 101 (115)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHS---SCCCH-HHHHHHHHHHHTTTTSCCEEC-C---------SSSSCCEEECCSSHHHH
T ss_pred HHHHHHHccCCCCcCHHHHHHH---HCCCh-hhHHHHHHHHHHcCCeEEEee-c---------CCCceEEEEECHHHHHH
Confidence 3445566667778899888774 88874 2333333 33333322211 1 12356799999999999
Q ss_pred HHHHHH
Q 045479 153 AAQEIS 158 (482)
Q Consensus 153 ~~eE~~ 158 (482)
+.+=..
T Consensus 102 ~~~~~~ 107 (115)
T d1hsja1 102 IQKLIS 107 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876433
No 5
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=9.29 E-value=69 Score=25.12 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=18.0
Q ss_pred hhhHHHhhHHhhCCcHHHHHHHhhCC
Q 045479 321 LIDHLTHFRKDFGLSNNLRAMILRHP 346 (482)
Q Consensus 321 ~v~~L~hFr~efgLp~k~~~~l~RHP 346 (482)
..+.+..+.+++|||.. ++.|||
T Consensus 173 ~K~eV~~lA~~lglP~~---i~~~~p 195 (197)
T d1gpma1 173 FKDEVRKIGLELGLPYD---MLYRHP 195 (197)
T ss_dssp CHHHHHHHHHHTTCCHH---HHTSCC
T ss_pred cHHHHHHHHHHcCCCHH---HhCCCC
Confidence 35577788999999998 566777
No 6
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.91 E-value=3e+02 Score=21.90 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=34.7
Q ss_pred hcCCCCeechhhhhhccccCCCCC---cchHhHHHhhCCceeEEeccCCCCCCCCCCCCCccceeecCHHHHHHHHHHHH
Q 045479 82 LSKPKHYIPIHILSKCRSYLSLPK---LKSIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQEIS 158 (482)
Q Consensus 82 ~s~P~~~lpl~~L~k~r~~LgL~~---~~~v~~FlrrYP~iF~~f~~p~~~~P~~~~~~~~~~~vrLT~~A~~L~~eE~~ 158 (482)
.+.|...++...|.+. +|+.. .+-+-+ |.+-=-|-. ..+|. ......+.||++|.+++.+=..
T Consensus 73 ~~~~~~~lt~~eLa~~---l~i~~~tvsr~l~~-Le~~GlV~r-~~~~~---------DrR~~~i~LT~~G~~l~~~~~~ 138 (172)
T d2fbka1 73 RSAPPEGLRPTELSAL---AAISGPSTSNRIVR-LLEKGLIER-REDER---------DRRSASIRLTPQGRALVTHLLP 138 (172)
T ss_dssp HHCCSSCBCHHHHHHH---CSCCSGGGSSHHHH-HHHHTSEEC-CC----------------CCBEECHHHHHHHHHHHH
T ss_pred hhCCCCCcCHHHHHHH---HCcCHhHHHHHHHH-HHhCCCeee-ecccc---------chhhHHhhcCHHHHHHHHHHHH
Confidence 3456667888888764 77774 222222 222233322 22221 1245689999999999887444
Q ss_pred HH
Q 045479 159 LK 160 (482)
Q Consensus 159 v~ 160 (482)
..
T Consensus 139 ~~ 140 (172)
T d2fbka1 139 AH 140 (172)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 7
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=8.77 E-value=2.3e+02 Score=21.59 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=17.1
Q ss_pred ccceeecCHHHHHHHHHHHHHH
Q 045479 139 YQQCVRLTPAAAALAAQEISLK 160 (482)
Q Consensus 139 ~~~~vrLT~~A~~L~~eE~~v~ 160 (482)
....+.||++|.+++.+=....
T Consensus 89 R~~~v~lT~~G~~~~~~~~~~~ 110 (143)
T d1s3ja_ 89 RVIDLSLTDEGDIKFEEVLAGR 110 (143)
T ss_dssp TSEEEEECHHHHHHHHHHHHHH
T ss_pred CceEEEECHHHHHHHHHHHHHH
Confidence 4668999999999888744444
No 8
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=8.20 E-value=1.9e+02 Score=22.10 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=41.1
Q ss_pred HHHHhcCCCCeechhhhhhccccCCCCCcc--hHhHHHhhCCceeEEeccCCCCCCCCCCCCCccceeecCHHHHHHHHH
Q 045479 78 KTLLLSKPKHYIPIHILSKCRSYLSLPKLK--SIRSMIHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAAQ 155 (482)
Q Consensus 78 k~lI~s~P~~~lpl~~L~k~r~~LgL~~~~--~v~~FlrrYP~iF~~f~~p~~~~P~~~~~~~~~~~vrLT~~A~~L~~e 155 (482)
...|...+ .++++.|.+ .+|++..- +++.-|.+---|-..-. |. .....++.||++|.+++.+
T Consensus 36 L~~i~~~~--~~t~~~la~---~l~i~~~tvs~~l~~L~~~gli~r~~~-~~---------D~R~~~i~LT~~G~~~~~~ 100 (139)
T d2a61a1 36 LQKIYFEG--PKRPGELSV---LLGVAKSTVTGLVKRLEADGYLTRTPD-PA---------DRRAYFLVITRKGEEVIEK 100 (139)
T ss_dssp HHHHHHHC--CBCHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEEE-TT---------EEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHcC--CCCHHHHHH---HhCCCcccchHHHHHHHhcCeeeeeec-cC---------CCCeEEEEECHHHHHHHHH
Confidence 33344443 456777765 48888521 23444445555554432 21 1246799999999999887
Q ss_pred HHHHHHh
Q 045479 156 EISLKSA 162 (482)
Q Consensus 156 E~~v~~~ 162 (482)
=......
T Consensus 101 ~~~~~~~ 107 (139)
T d2a61a1 101 VIERREN 107 (139)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 9
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=7.49 E-value=1.5e+02 Score=19.42 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcCCCCeechhhhhhccccCCCCCcchHhHHH
Q 045479 72 RFVQKLKTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSMI 113 (482)
Q Consensus 72 r~v~~lk~lI~s~P~~~lpl~~L~k~r~~LgL~~~~~v~~Fl 113 (482)
..+.++.+.|..+....+++.+|.+. +|+.. +.+.+.+
T Consensus 3 ~~i~~v~~yI~~~~~~~~tl~~lA~~---~~~s~-~~l~r~F 40 (54)
T d1bl0a1 3 ITIHSILDWIEDNLESPLSLEKVSER---SGYSK-WHLQRMF 40 (54)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHH---SSSCH-HHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHH---HCcCH-HHHHHHH
Confidence 34778899999999999999998875 88884 3344433
No 10
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=7.28 E-value=1.5e+02 Score=22.74 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHhcCCCCeechhhhhhccccCCCCCcchHhHH---HhhCCceeEEeccCCCCCCCCCCCCCccceeecCHHHHHHHH
Q 045479 78 KTLLLSKPKHYIPIHILSKCRSYLSLPKLKSIRSM---IHRYPMIFEVFAVPMPPTPLNATKSGYQQCVRLTPAAAALAA 154 (482)
Q Consensus 78 k~lI~s~P~~~lpl~~L~k~r~~LgL~~~~~v~~F---lrrYP~iF~~f~~p~~~~P~~~~~~~~~~~vrLT~~A~~L~~ 154 (482)
...|..+|+ +++..|.+ .+|++. -.+.+. |.+-=-|=..- +|. .....++.||++|.+++.
T Consensus 38 L~~l~~~~~--~t~~~La~---~l~i~~-~~vs~~v~~L~~~gli~r~~-~~~---------D~R~~~l~lT~~G~~~~~ 101 (140)
T d2etha1 38 FLYVALFGP--KKMKEIAE---FLSTTK-SNVTNVVDSLEKRGLVVREM-DPV---------DRRTYRVVLTEKGKEIFG 101 (140)
T ss_dssp HHHHHHHCC--BCHHHHHH---HTTSCH-HHHHHHHHHHHHTTSEEEEE-CTT---------TSSCEEEEECHHHHHHHH
T ss_pred HHHHHHcCC--cCHHHHHH---HHCcCH-HHHHHHHHHHHHCCCeeeee-ccc---------ccchhhhhcCHHHHHHHH
Confidence 344555554 45666665 488874 233333 33344443332 221 224668999999999988
Q ss_pred HHHHHHH
Q 045479 155 QEISLKS 161 (482)
Q Consensus 155 eE~~v~~ 161 (482)
+-.....
T Consensus 102 ~~~~~~~ 108 (140)
T d2etha1 102 EILSNFE 108 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
Done!