Query 045481
Match_columns 177
No_of_seqs 122 out of 1432
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 03:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 4.6E-36 1.6E-40 194.2 4.7 68 1-68 7-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 1.5E-35 5E-40 196.3 6.2 68 1-68 7-74 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.6E-33 5.5E-38 189.6 3.9 65 1-65 23-87 (100)
4 1hbx_A SRF, serum response fac 100.0 2.6E-33 8.9E-38 186.3 2.4 64 1-64 17-80 (92)
5 1k6o_B SRF, serum response fac 100.0 1.2E-32 4.2E-37 186.5 2.5 62 1-62 16-77 (103)
6 2ke4_A CDC42-interacting prote 75.8 14 0.00047 24.1 8.4 65 85-151 15-79 (98)
7 1p9i_A Cortexillin I/GCN4 hybr 67.7 9.3 0.00032 18.7 3.4 26 134-159 2-27 (31)
8 2pk8_A Uncharacterized protein 67.3 3.9 0.00013 26.6 2.5 36 140-175 12-47 (103)
9 2yy0_A C-MYC-binding protein; 62.6 19 0.00066 20.6 4.9 24 86-109 20-43 (53)
10 1lyp_A CAP18; lipopolysacchari 62.0 13 0.00044 18.3 3.9 24 135-158 5-28 (32)
11 1fxk_A Prefoldin; archaeal pro 61.9 29 0.00098 22.3 6.5 13 53-65 1-13 (107)
12 1z56_A Ligase interacting fact 61.3 10 0.00036 28.8 4.3 56 4-66 119-177 (246)
13 2l5g_B Putative uncharacterize 53.1 19 0.00063 19.7 3.3 29 130-158 1-29 (42)
14 1s94_A S-syntaxin; three helix 50.0 65 0.0022 22.8 9.2 66 90-159 41-106 (180)
15 1ik9_A DNA repair protein XRCC 46.8 86 0.0029 23.2 8.6 29 133-161 174-202 (213)
16 3fx7_A Putative uncharacterize 45.0 47 0.0016 21.4 4.9 29 131-159 6-34 (94)
17 1g6u_A Domain swapped dimer; d 44.2 37 0.0013 18.2 4.8 24 129-152 15-38 (48)
18 2phn_A F420-0:gamma-glutamyl l 40.5 4.5 0.00015 31.2 -0.7 28 27-54 138-165 (254)
19 1nkp_B MAX protein, MYC proto- 39.4 66 0.0022 19.8 7.0 29 84-112 46-74 (83)
20 2cly_B ATP synthase D chain, m 39.1 1E+02 0.0034 21.8 6.6 13 127-139 126-138 (160)
21 3mwp_A Nucleoprotein; structur 38.9 49 0.0017 27.7 5.1 25 127-151 98-122 (577)
22 2l5g_A GPS2 protein, G protein 38.3 33 0.0011 18.1 2.7 29 131-159 8-36 (38)
23 1t6f_A Geminin; coiled-coil, c 38.1 44 0.0015 17.4 3.2 24 88-111 10-33 (37)
24 4i0x_B ESAT-6-like protein MAB 37.7 25 0.00086 22.5 2.8 42 130-175 10-51 (103)
25 1j1d_B Troponin T, TNT; THIN f 37.6 51 0.0017 21.8 4.3 28 127-154 38-65 (106)
26 3tso_C RAB11 family-interactin 37.6 71 0.0024 19.6 4.8 17 129-145 12-28 (75)
27 2ky6_A Mediator of RNA polymer 37.4 20 0.00068 25.6 2.4 21 29-49 116-136 (166)
28 1m2d_A [2Fe-2S] ferredoxin; th 34.5 17 0.00058 23.8 1.6 32 32-64 59-91 (110)
29 2k48_A Nucleoprotein; viral pr 34.1 99 0.0034 20.3 7.5 69 85-159 35-103 (107)
30 3sl9_C B-cell CLL/lymphoma 9 p 33.5 58 0.002 18.2 3.4 24 125-148 4-27 (55)
31 2hv8_D RAB11 family-interactin 33.1 79 0.0027 18.8 5.3 35 126-160 18-52 (64)
32 2zqm_A Prefoldin beta subunit 32.8 91 0.0031 20.1 5.1 9 55-63 8-16 (117)
33 1lj9_A Transcriptional regulat 28.4 96 0.0033 20.2 4.7 30 127-156 111-140 (144)
34 2zvv_Y Cyclin-dependent kinase 28.0 7.2 0.00025 18.6 -0.8 11 8-18 15-25 (26)
35 2vqe_M 30S ribosomal protein S 27.4 1.3E+02 0.0044 20.4 5.1 35 125-159 42-83 (126)
36 2k1v_A Insulin-like peptide IN 27.2 17 0.00058 17.6 0.4 9 25-33 14-22 (26)
37 3rrk_A V-type ATPase 116 kDa s 27.2 1.4E+02 0.0048 23.3 6.2 12 54-65 200-211 (357)
38 3twe_A Alpha4H; unknown functi 26.6 59 0.002 15.3 3.6 15 89-103 5-19 (27)
39 3rmq_A Uncharacterized protein 26.1 12 0.0004 25.1 -0.4 12 26-37 30-41 (116)
40 2jo8_A Serine/threonine-protei 26.0 82 0.0028 17.9 3.2 23 126-148 5-27 (51)
41 1ytz_T Troponin T; muscle, THI 25.1 1.5E+02 0.0051 19.5 7.5 28 126-153 37-64 (107)
42 2w6b_A RHO guanine nucleotide 24.1 1.1E+02 0.0038 17.6 5.2 29 85-113 17-45 (56)
43 1deq_A Fibrinogen (alpha chain 23.8 2.9E+02 0.01 22.4 9.0 19 137-155 116-134 (390)
44 1dd4_C 50S ribosomal protein L 23.3 52 0.0018 17.6 2.0 21 127-147 9-29 (40)
45 1x40_A ARAP2; ASAP-related pro 23.2 75 0.0026 20.0 3.1 44 127-172 44-87 (91)
46 3kp7_A Transcriptional regulat 23.2 1E+02 0.0035 20.4 4.1 29 127-155 121-149 (151)
47 4gmn_B 60S ribosomal protein L 22.6 22 0.00076 19.9 0.4 10 11-20 17-26 (49)
48 4aik_A Transcriptional regulat 22.4 1E+02 0.0035 20.8 4.0 26 127-152 114-139 (151)
49 2fbh_A Transcriptional regulat 21.9 69 0.0023 20.9 2.9 26 127-152 120-145 (146)
50 2oa5_A Hypothetical protein BQ 21.7 1.8E+02 0.0062 19.2 6.5 56 85-150 8-63 (110)
51 1hlo_A Protein (transcription 20.6 1.5E+02 0.0052 17.9 5.6 19 85-103 57-75 (80)
52 3ghg_A Fibrinogen alpha chain; 20.4 1.3E+02 0.0045 25.6 4.7 13 85-97 64-76 (562)
53 4dnd_A Syntaxin-10, SYN10; str 20.3 2.1E+02 0.0071 19.3 9.5 28 130-157 101-128 (130)
54 1ez3_A Syntaxin-1A; three heli 20.3 1.9E+02 0.0064 18.8 8.5 27 133-159 49-75 (127)
55 1ybx_A Conserved hypothetical 20.0 21 0.00071 25.0 -0.1 21 87-107 43-63 (143)
56 1txp_A HnRNP C, heterogeneous 20.0 93 0.0032 15.2 3.3 18 134-151 6-23 (28)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=4.6e-36 Score=194.19 Aligned_cols=68 Identities=44% Similarity=0.715 Sum_probs=64.0
Q ss_pred CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhhcCCC
Q 045481 1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPN 68 (177)
Q Consensus 1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~~~~~ 68 (177)
|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+|+.||+||...+++
T Consensus 7 ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred eEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 78999999999999999999999999999999999999999999999999999999999999987644
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.5e-35 Score=196.34 Aligned_cols=68 Identities=44% Similarity=0.715 Sum_probs=66.1
Q ss_pred CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhhcCCC
Q 045481 1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPN 68 (177)
Q Consensus 1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~~~~~ 68 (177)
|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+|+.||+||+..+++
T Consensus 7 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~ 74 (90)
T 3p57_A 7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (90)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSC
T ss_pred eEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999998765
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.98 E-value=1.6e-33 Score=189.61 Aligned_cols=65 Identities=38% Similarity=0.586 Sum_probs=62.9
Q ss_pred CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhhc
Q 045481 1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLAR 65 (177)
Q Consensus 1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~~ 65 (177)
|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|++..|+++|.+.
T Consensus 23 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 23 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR 87 (100)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred eEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence 78999999999999999999999999999999999999999999999999999999999999753
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=2.6e-33 Score=186.27 Aligned_cols=64 Identities=33% Similarity=0.491 Sum_probs=61.8
Q ss_pred CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhh
Q 045481 1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLA 64 (177)
Q Consensus 1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~ 64 (177)
|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+|+.||++|.+
T Consensus 17 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 17 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred EEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 6899999999999999999999999999999999999999999999999999999999998764
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=1.2e-32 Score=186.47 Aligned_cols=62 Identities=34% Similarity=0.512 Sum_probs=60.4
Q ss_pred CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHH
Q 045481 1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLY 62 (177)
Q Consensus 1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry 62 (177)
|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+|+.||+++
T Consensus 16 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 16 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred EEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999999999974
No 6
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=75.84 E-value=14 Score=24.12 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccccCccCCCCHHHHHHHHHHHHHHHHHHH
Q 045481 85 ANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLKTAMEELKKNVE 151 (177)
Q Consensus 85 ~~~~~l~~q~~~l~~~le~ekk~~e~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~l~~V~ 151 (177)
.....|..++.++..+++++....+-+.+|...-....-+| +...+ ..+|.+....|+.+...+.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~G-D~~s~-~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMG-DPASL-EPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGC-CGGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34557888999999999999888888888876632222233 33444 6677777777777766653
No 7
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=67.73 E-value=9.3 Score=18.71 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045481 134 HELEQLKTAMEELKKNVEQQANKILI 159 (177)
Q Consensus 134 eeL~~l~~~Le~~l~~V~~r~~~L~~ 159 (177)
++|..|..+|+.--+.+..+.++|+.
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888777777777777764
No 8
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=67.30 E-value=3.9 Score=26.61 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccc
Q 045481 140 KTAMEELKKNVEQQANKILIDSKNNPSPFFGLGFWT 175 (177)
Q Consensus 140 ~~~Le~~l~~V~~r~~~L~~~~~~~~~~~~~~~~~~ 175 (177)
..-+.+.+..|.+++++|-+++..|-..++|+.|+-
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~G~eaye 47 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILFGREAYN 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEECHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEcHHHHH
Confidence 345677788899999999999999989999998863
No 9
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.63 E-value=19 Score=20.59 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 045481 86 NIRELNMQLTQVLHQLEVEKKHGE 109 (177)
Q Consensus 86 ~~~~l~~q~~~l~~~le~ekk~~e 109 (177)
.++.|..+..+|+.+++..+++.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444433
No 10
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=61.98 E-value=13 Score=18.33 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 045481 135 ELEQLKTAMEELKKNVEQQANKIL 158 (177)
Q Consensus 135 eL~~l~~~Le~~l~~V~~r~~~L~ 158 (177)
-|+.|...+.+.+++|.+++.-|+
T Consensus 5 rlrkfrnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 5 RLRKFRNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467788889999999998887765
No 11
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=61.88 E-value=29 Score=22.29 Aligned_cols=13 Identities=23% Similarity=0.233 Sum_probs=8.4
Q ss_pred CChhHHHHHHhhc
Q 045481 53 PNVDSILDLYLAR 65 (177)
Q Consensus 53 psv~~Vl~ry~~~ 65 (177)
|.+...+.+|...
T Consensus 1 ~~~Q~~i~~f~~l 13 (107)
T 1fxk_A 1 QNVQHQLAQFQQL 13 (107)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 5566677777653
No 12
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=61.30 E-value=10 Score=28.82 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=9.0
Q ss_pred cCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCC---ChhHHHHHHhhcC
Q 045481 4 IPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHP---NVDSILDLYLARN 66 (177)
Q Consensus 4 I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~p---sv~~Vl~ry~~~~ 66 (177)
|++...=.+|+.||-.||..|..+|+.--+=+=++ .+|.|+.- .+..+-++|.+..
T Consensus 119 iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eI-------dLFewA~~L~q~i~~ln~k~~~~E 177 (246)
T 1z56_A 119 MQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEI-------DLFEMADKLYKDICCVNDSYRNIK 177 (246)
T ss_dssp -----------------------------------------------CTTSGGGTTHHHHHHHHTT
T ss_pred ceeCCEEEEEEeehhhHHHhhheeEEeecCccchh-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444557899999999999988875432222221 14444321 3556777777654
No 13
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=53.11 E-value=19 Score=19.66 Aligned_cols=29 Identities=31% Similarity=0.216 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045481 130 ELGLHELEQLKTAMEELKKNVEQQANKIL 158 (177)
Q Consensus 130 ~Ls~eeL~~l~~~Le~~l~~V~~r~~~L~ 158 (177)
+++-+||-+=.+.++.=..+++++|+.|-
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777653
No 14
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=50.00 E-value=65 Score=22.78 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045481 90 LNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILI 159 (177)
Q Consensus 90 l~~q~~~l~~~le~ekk~~e~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~l~~V~~r~~~L~~ 159 (177)
.-.+.+.+...++........+..++...... ..-+.---++|..+...+..+-+.|+.++..|-.
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~----~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~ 106 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSA----PQTDDQMKEELEELMTDIKRTANKVRGKLKTIEL 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555655555555555555432110 1112223478888888888888888888888754
No 15
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=46.78 E-value=86 Score=23.24 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045481 133 LHELEQLKTAMEELKKNVEQQANKILIDS 161 (177)
Q Consensus 133 ~eeL~~l~~~Le~~l~~V~~r~~~L~~~~ 161 (177)
.+-+..|...|.+++.+||+..+.|+.++
T Consensus 174 ~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~ 202 (213)
T 1ik9_A 174 TDLYKRFILVLNEKKTKIRSLHNKLLNAA 202 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34466899999999999999998887643
No 16
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=45.02 E-value=47 Score=21.43 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045481 131 LGLHELEQLKTAMEELKKNVEQQANKILI 159 (177)
Q Consensus 131 Ls~eeL~~l~~~Le~~l~~V~~r~~~L~~ 159 (177)
++++|++.|...|+.-...+++....|..
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~ 34 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSN 34 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999998888754
No 17
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=44.19 E-value=37 Score=18.21 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 045481 129 NELGLHELEQLKTAMEELKKNVEQ 152 (177)
Q Consensus 129 ~~Ls~eeL~~l~~~Le~~l~~V~~ 152 (177)
++.++++|-.|+..|..+-+++..
T Consensus 15 egfspeelaaleselqalekklaa 38 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAA 38 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 357899998888776655555443
No 18
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=40.54 E-value=4.5 Score=31.24 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=22.8
Q ss_pred HHhhhcCCcEEEEEecCCCCCcccCCCC
Q 045481 27 ELSTLCGVDIALIVFSPANKAFSFGHPN 54 (177)
Q Consensus 27 ELs~LC~vev~~Ivfsp~gk~~~f~~ps 54 (177)
+|.-.+|++|+|||+.+.|+++-.|.|.
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~~ 165 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVVG 165 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCcc
Confidence 4556789999999999999888776654
No 19
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=39.39 E-value=66 Score=19.76 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 045481 84 NANIRELNMQLTQVLHQLEVEKKHGEVLS 112 (177)
Q Consensus 84 ~~~~~~l~~q~~~l~~~le~ekk~~e~l~ 112 (177)
..+|..|..+...+..+++..+.++..|.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777766666655554443
No 20
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=39.09 E-value=1e+02 Score=21.78 Aligned_cols=13 Identities=15% Similarity=0.731 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHH
Q 045481 127 PINELGLHELEQL 139 (177)
Q Consensus 127 ~l~~Ls~eeL~~l 139 (177)
+++.|+++|+..-
T Consensus 126 P~~~mT~dd~~~a 138 (160)
T 2cly_B 126 PFDQMTIEDLNEV 138 (160)
T ss_dssp -------------
T ss_pred ChHhCCHHHHHHh
Confidence 6788888887543
No 21
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=38.87 E-value=49 Score=27.70 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=23.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH
Q 045481 127 PINELGLHELEQLKTAMEELKKNVE 151 (177)
Q Consensus 127 ~l~~Ls~eeL~~l~~~Le~~l~~V~ 151 (177)
.+.+|+.+||.+|..-||+++++|.
T Consensus 98 kvG~LskdeLm~LasDLeKLK~KV~ 122 (577)
T 3mwp_A 98 RVGTLTSDDLLILAADLEKLKSKVI 122 (577)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcCHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999984
No 22
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.33 E-value=33 Score=18.10 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045481 131 LGLHELEQLKTAMEELKKNVEQQANKILI 159 (177)
Q Consensus 131 Ls~eeL~~l~~~Le~~l~~V~~r~~~L~~ 159 (177)
++++|-++=...++..+..+++-+.+|+.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666553
No 23
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=38.08 E-value=44 Score=17.43 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 045481 88 RELNMQLTQVLHQLEVEKKHGEVL 111 (177)
Q Consensus 88 ~~l~~q~~~l~~~le~ekk~~e~l 111 (177)
+.|+..+++...++...+.+++.|
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 356666666666666655554443
No 24
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=37.69 E-value=25 Score=22.52 Aligned_cols=42 Identities=17% Similarity=0.365 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccc
Q 045481 130 ELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFFGLGFWT 175 (177)
Q Consensus 130 ~Ls~eeL~~l~~~Le~~l~~V~~r~~~L~~~~~~~~~~~~~~~~~~ 175 (177)
..+.++|......|......|...+..|...- .|+.+.|||+
T Consensus 10 ~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v----~~L~~~g~W~ 51 (103)
T 4i0x_B 10 SFDLDHIEQVTSRARGFKEFVTENLDQLESRA----QKLVQSGQWA 51 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTSSC
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCee
Confidence 34566777777777666666666666654322 2555666675
No 25
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=37.60 E-value=51 Score=21.75 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=21.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045481 127 PINELGLHELEQLKTAMEELKKNVEQQA 154 (177)
Q Consensus 127 ~l~~Ls~eeL~~l~~~Le~~l~~V~~r~ 154 (177)
++++||.++|+++...|-..+..+.+-.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEK 65 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEK 65 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 6889999999998888877766665443
No 26
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=37.55 E-value=71 Score=19.64 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=8.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q 045481 129 NELGLHELEQLKTAMEE 145 (177)
Q Consensus 129 ~~Ls~eeL~~l~~~Le~ 145 (177)
..++-+||.++.-.++.
T Consensus 12 ~~ltreELi~l~lk~~~ 28 (75)
T 3tso_C 12 RSLTYEEVLQELVKHKE 28 (75)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 34555555554444443
No 27
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=37.37 E-value=20 Score=25.64 Aligned_cols=21 Identities=24% Similarity=0.619 Sum_probs=17.2
Q ss_pred hhhcCCcEEEEEecCCCCCcc
Q 045481 29 STLCGVDIALIVFSPANKAFS 49 (177)
Q Consensus 29 s~LC~vev~~Ivfsp~gk~~~ 49 (177)
+.-|++.|-|++|||+-+.|.
T Consensus 116 ~~~ceiKvLiLlYs~~k~afl 136 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFM 136 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEE
T ss_pred CCCcceEEEEEEEcCCcceee
Confidence 345999999999999887653
No 28
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=34.53 E-value=17 Score=23.77 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=20.0
Q ss_pred cCCcEEEEEecCCCCCcccCCC-ChhHHHHHHhh
Q 045481 32 CGVDIALIVFSPANKAFSFGHP-NVDSILDLYLA 64 (177)
Q Consensus 32 C~vev~~Ivfsp~gk~~~f~~p-sv~~Vl~ry~~ 64 (177)
|+-.-.|+|+ |+|..|...+| .+..||+.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 3333345555 88866655555 48899998753
No 29
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.12 E-value=99 Score=20.29 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045481 85 ANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILI 159 (177)
Q Consensus 85 ~~~~~l~~q~~~l~~~le~ekk~~e~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~l~~V~~r~~~L~~ 159 (177)
..+++++.++...+.+|.....+.....+... .. .++++--++..-+.-...|+.++..++..+.....
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E---~D---PDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVE---VD---PDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777776666666543333222222111 10 12344444555555556666666666666655544
No 30
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=33.54 E-value=58 Score=18.15 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=17.3
Q ss_pred cCccCCCCHHHHHHHHHHHHHHHH
Q 045481 125 EAPINELGLHELEQLKTAMEELKK 148 (177)
Q Consensus 125 ~~~l~~Ls~eeL~~l~~~Le~~l~ 148 (177)
++.-++||.|+|+.-+.+|..++.
T Consensus 4 ~~n~~gls~eqlehrerslqtlrd 27 (55)
T 3sl9_C 4 GENPDGLSQEQLEHRERSLQTLRD 27 (55)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCHHHHHHHHHHHHHHHH
Confidence 456789999999888888776654
No 31
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=33.06 E-value=79 Score=18.82 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=27.4
Q ss_pred CccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045481 126 APINELGLHELEQLKTAMEELKKNVEQQANKILID 160 (177)
Q Consensus 126 ~~l~~Ls~eeL~~l~~~Le~~l~~V~~r~~~L~~~ 160 (177)
..++++|.+||.+....-++....++.-|+.|+..
T Consensus 18 ae~~~~s~deL~~~l~eqee~n~~Le~YID~LL~~ 52 (64)
T 2hv8_D 18 AEISSVSRDELMEAIQKQEEINFRLQDYIDRIIVA 52 (64)
T ss_dssp TTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999888887777777888888877543
No 32
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.83 E-value=91 Score=20.10 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=4.0
Q ss_pred hhHHHHHHh
Q 045481 55 VDSILDLYL 63 (177)
Q Consensus 55 v~~Vl~ry~ 63 (177)
+...+.+|.
T Consensus 8 ~Q~~i~~~~ 16 (117)
T 2zqm_A 8 VQAMLGQLE 16 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 33
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.39 E-value=96 Score=20.18 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=25.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045481 127 PINELGLHELEQLKTAMEELKKNVEQQANK 156 (177)
Q Consensus 127 ~l~~Ls~eeL~~l~~~Le~~l~~V~~r~~~ 156 (177)
-+.+++.+|+..|...|+.+...+...+++
T Consensus 111 ~~~~l~~~e~~~l~~~l~~l~~~l~~~~~~ 140 (144)
T 1lj9_A 111 ALQGLSEVEISQLADYLVRMRKNVSEDWEF 140 (144)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 457899999999999999988888776654
No 34
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=28.04 E-value=7.2 Score=18.63 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=7.6
Q ss_pred Ccchhhhhhch
Q 045481 8 NNLQVTFSKRR 18 (177)
Q Consensus 8 ~~R~~Tf~KRr 18 (177)
+.|++.|.||+
T Consensus 15 sKRRlvf~~rk 25 (26)
T 2zvv_Y 15 SKRRLIFSXXX 25 (26)
T ss_pred hhceEEEEecc
Confidence 45777777776
No 35
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=27.36 E-value=1.3e+02 Score=20.40 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=27.8
Q ss_pred cCccCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Q 045481 125 EAPINELGLHELEQLKTAME-------ELKKNVEQQANKILI 159 (177)
Q Consensus 125 ~~~l~~Ls~eeL~~l~~~Le-------~~l~~V~~r~~~L~~ 159 (177)
+..+.+|+.+|+..|...|+ ++...+++-|+.|..
T Consensus 42 ~~r~~~Lt~~ei~~l~~~i~~~~~ve~dLrr~~~~nIkRL~~ 83 (126)
T 2vqe_M 42 ATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMD 83 (126)
T ss_dssp TSBGGGCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCCHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHH
Confidence 34589999999999999988 577777777777653
No 36
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=27.23 E-value=17 Score=17.59 Aligned_cols=9 Identities=44% Similarity=0.925 Sum_probs=6.8
Q ss_pred HHHHhhhcC
Q 045481 25 ASELSTLCG 33 (177)
Q Consensus 25 a~ELs~LC~ 33 (177)
.+|||.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 479999995
No 37
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=27.22 E-value=1.4e+02 Score=23.34 Aligned_cols=12 Identities=17% Similarity=-0.108 Sum_probs=7.2
Q ss_pred ChhHHHHHHhhc
Q 045481 54 NVDSILDLYLAR 65 (177)
Q Consensus 54 sv~~Vl~ry~~~ 65 (177)
.++.|++.|.-.
T Consensus 200 ~v~~il~s~~f~ 211 (357)
T 3rrk_A 200 AARSSLSRLGLA 211 (357)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHHHHCCCe
Confidence 466777776533
No 38
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.62 E-value=59 Score=15.30 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 045481 89 ELNMQLTQVLHQLEV 103 (177)
Q Consensus 89 ~l~~q~~~l~~~le~ 103 (177)
++-++++.++..+.+
T Consensus 5 elykeledlqerlrk 19 (27)
T 3twe_A 5 ELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555444443
No 39
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=26.13 E-value=12 Score=25.08 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=10.0
Q ss_pred HHHhhhcCCcEE
Q 045481 26 SELSTLCGVDIA 37 (177)
Q Consensus 26 ~ELs~LC~vev~ 37 (177)
..+.+|||++|-
T Consensus 30 ~~ftaLCG~~VT 41 (116)
T 3rmq_A 30 RPFTALCGETVT 41 (116)
T ss_dssp CCEECTTSCEEC
T ss_pred CccccccCCeec
Confidence 357899999987
No 40
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=26.02 E-value=82 Score=17.86 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=17.3
Q ss_pred CccCCCCHHHHHHHHHHHHHHHH
Q 045481 126 APINELGLHELEQLKTAMEELKK 148 (177)
Q Consensus 126 ~~l~~Ls~eeL~~l~~~Le~~l~ 148 (177)
+.|.+||.+||.+....|+.-+.
T Consensus 5 ~fLk~ls~eEL~~rl~~Ld~~Me 27 (51)
T 2jo8_A 5 EFLKSWTVEDLQKRLLALDPMME 27 (51)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHccHHHH
Confidence 35788999999988877765443
No 41
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=25.06 E-value=1.5e+02 Score=19.45 Aligned_cols=28 Identities=11% Similarity=0.155 Sum_probs=21.6
Q ss_pred CccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045481 126 APINELGLHELEQLKTAMEELKKNVEQQ 153 (177)
Q Consensus 126 ~~l~~Ls~eeL~~l~~~Le~~l~~V~~r 153 (177)
.++++||.++|+++...|-..+..+.+-
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeE 64 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTE 64 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999888887766666443
No 42
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.06 E-value=1.1e+02 Score=17.55 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 045481 85 ANIRELNMQLTQVLHQLEVEKKHGEVLSE 113 (177)
Q Consensus 85 ~~~~~l~~q~~~l~~~le~ekk~~e~l~~ 113 (177)
+.+..|.+...++.+-++.|.+....|+.
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444333433
No 43
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.83 E-value=2.9e+02 Score=22.41 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045481 137 EQLKTAMEELKKNVEQQAN 155 (177)
Q Consensus 137 ~~l~~~Le~~l~~V~~r~~ 155 (177)
.+|+..+.-++.+|+..+.
T Consensus 116 ~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444443
No 44
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=23.28 E-value=52 Score=17.62 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHH
Q 045481 127 PINELGLHELEQLKTAMEELK 147 (177)
Q Consensus 127 ~l~~Ls~eeL~~l~~~Le~~l 147 (177)
.+.+|+.-|+.+|...|++..
T Consensus 9 ~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 9 AIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHHH
Confidence 577899999999999888753
No 45
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=23.24 E-value=75 Score=19.95 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=28.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 045481 127 PINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFFGLG 172 (177)
Q Consensus 127 ~l~~Ls~eeL~~l~~~Le~~l~~V~~r~~~L~~~~~~~~~~~~~~~ 172 (177)
.+-.|+.+||.++--..-.-+++|-..+..|.... +..|+.|.+
T Consensus 44 ~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~~--~~~~~~~~~ 87 (91)
T 1x40_A 44 DCAAINDSLLQKIGISPTGHRRRILKQLQIILSKM--QDIPIYASG 87 (91)
T ss_dssp GGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHC--CCCCCCCCC
T ss_pred HHhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhhc--CCCCeecCC
Confidence 57889999999885555556666666666665444 234555554
No 46
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=23.17 E-value=1e+02 Score=20.37 Aligned_cols=29 Identities=10% Similarity=0.315 Sum_probs=23.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045481 127 PINELGLHELEQLKTAMEELKKNVEQQAN 155 (177)
Q Consensus 127 ~l~~Ls~eeL~~l~~~Le~~l~~V~~r~~ 155 (177)
-+.+++.+|+..|...|+.+...+..-.+
T Consensus 121 ~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 149 (151)
T 3kp7_A 121 MTSDFDSKEIEKVRQVLEIIDYRIQSYTS 149 (151)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46779999999999999988888765443
No 47
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=22.58 E-value=22 Score=19.86 Aligned_cols=10 Identities=50% Similarity=0.946 Sum_probs=7.6
Q ss_pred hhhhhhchhh
Q 045481 11 QVTFSKRRAG 20 (177)
Q Consensus 11 ~~Tf~KRr~G 20 (177)
|+.|++||.|
T Consensus 17 QvkfRRRREG 26 (49)
T 4gmn_B 17 QTKFKRRRQG 26 (49)
T ss_pred hhHHhhhhcc
Confidence 6778888776
No 48
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=22.35 E-value=1e+02 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=20.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHH
Q 045481 127 PINELGLHELEQLKTAMEELKKNVEQ 152 (177)
Q Consensus 127 ~l~~Ls~eeL~~l~~~Le~~l~~V~~ 152 (177)
-+.+++.+|+..|...|+.+..++.+
T Consensus 114 ~~~~l~~ee~~~l~~~L~kl~~nl~~ 139 (151)
T 4aik_A 114 ILGGISSDEIAVLSGLIDKLEKNIIQ 139 (151)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35779999999998888877776643
No 49
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.85 E-value=69 Score=20.92 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=21.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHH
Q 045481 127 PINELGLHELEQLKTAMEELKKNVEQ 152 (177)
Q Consensus 127 ~l~~Ls~eeL~~l~~~Le~~l~~V~~ 152 (177)
-+++++.+|+..|...|+.....+..
T Consensus 120 ~~~~l~~~e~~~l~~~l~~l~~~l~~ 145 (146)
T 2fbh_A 120 VLTGIDESEQALCQQVLLRILANLEN 145 (146)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35679999999999999888777654
No 50
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=21.73 E-value=1.8e+02 Score=19.20 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccccCccCCCCHHHHHHHHHHHHHHHHHH
Q 045481 85 ANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLKTAMEELKKNV 150 (177)
Q Consensus 85 ~~~~~l~~q~~~l~~~le~ekk~~e~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~l~~V 150 (177)
..+++|..++.+|+-+...++++ ++. . +.. +.+-.-|+..+-+.+..+.-..+...
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkk------l~~-~-g~~--~p~d~~LTp~qKea~I~s~~~~Lss~ 63 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQK------VKS-S-GAV--SSDDSILTAAKRESIIVSSSRALGAV 63 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHT------C-------------CCBCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH------Hhc-C-CCC--CCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 35667777777765444433333 221 1 111 24567899999988888776666554
No 51
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.59 E-value=1.5e+02 Score=17.90 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 045481 85 ANIRELNMQLTQVLHQLEV 103 (177)
Q Consensus 85 ~~~~~l~~q~~~l~~~le~ 103 (177)
.+|..|..+...+..+++.
T Consensus 57 ~YI~~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666665555443
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.40 E-value=1.3e+02 Score=25.60 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHH
Q 045481 85 ANIRELNMQLTQV 97 (177)
Q Consensus 85 ~~~~~l~~q~~~l 97 (177)
..|++|.++|+++
T Consensus 64 krINELKnqLEdl 76 (562)
T 3ghg_A 64 NRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555444443
No 53
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.34 E-value=2.1e+02 Score=19.33 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045481 130 ELGLHELEQLKTAMEELKKNVEQQANKI 157 (177)
Q Consensus 130 ~Ls~eeL~~l~~~Le~~l~~V~~r~~~L 157 (177)
+++..|+..-...+......|..=.++|
T Consensus 101 ~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 101 KLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4888899888888888888777655554
No 54
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.32 E-value=1.9e+02 Score=18.79 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045481 133 LHELEQLKTAMEELKKNVEQQANKILI 159 (177)
Q Consensus 133 ~eeL~~l~~~Le~~l~~V~~r~~~L~~ 159 (177)
-++|..+...+...-..|+.++..|-.
T Consensus 49 ~~~l~~l~~~i~~~a~~ik~~Lk~l~~ 75 (127)
T 1ez3_A 49 KEELEELMSDIKKTANKVRSKLKSIEQ 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777888888888877643
No 55
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=20.04 E-value=21 Score=24.99 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 045481 87 IRELNMQLTQVLHQLEVEKKH 107 (177)
Q Consensus 87 ~~~l~~q~~~l~~~le~ekk~ 107 (177)
+..+-+|.+++++++++.+++
T Consensus 43 m~~mmkQAQkmQ~km~k~Qee 63 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEE 63 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666554433
No 56
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=20.01 E-value=93 Score=15.20 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045481 134 HELEQLKTAMEELKKNVE 151 (177)
Q Consensus 134 eeL~~l~~~Le~~l~~V~ 151 (177)
.||.++...++.++..+.
T Consensus 6 kELtQIK~kvDsLLe~Le 23 (28)
T 1txp_A 6 KELTQIKQKVDSLLENLE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666666553
Done!