Query 045484
Match_columns 179
No_of_seqs 155 out of 883
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 03:48:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_D 50S ribosomal protein L 100.0 4E-55 1.4E-59 379.6 7.8 142 18-175 104-272 (276)
2 3r8s_C 50S ribosomal protein L 100.0 5.3E-55 1.8E-59 378.0 7.2 138 18-169 102-266 (271)
3 3bbo_E Ribosomal protein L2; l 100.0 4.5E-55 1.5E-59 378.2 5.8 140 17-169 98-266 (269)
4 1vq8_A 50S ribosomal protein L 100.0 8E-44 2.8E-48 303.9 4.7 110 17-135 67-208 (240)
5 3j21_B 50S ribosomal protein L 100.0 2.4E-43 8.1E-48 300.9 5.9 121 17-152 69-222 (239)
6 3iz5_B 60S ribosomal protein L 100.0 2.2E-43 7.4E-48 304.2 5.4 112 17-137 74-219 (261)
7 3jyw_B 60S ribosomal protein L 100.0 2E-43 6.8E-48 301.9 4.4 112 17-137 73-218 (243)
8 4a17_A RPL8; eukaryotic riboso 100.0 5E-43 1.7E-47 302.3 6.3 111 18-137 76-220 (264)
9 1giy_D 50S ribosomal protein L 100.0 8.3E-42 2.8E-46 280.8 5.4 105 17-130 42-178 (178)
10 2ftc_B Mitochondrial ribosomal 99.8 3.1E-22 1.1E-26 158.4 3.5 81 17-106 24-136 (136)
11 1rl2_A Protein (ribosomal prot 99.7 8.5E-19 2.9E-23 138.8 3.4 67 17-88 42-135 (137)
12 1oei_A Major prion protein; oc 57.1 6.7 0.00023 22.8 2.0 11 126-136 6-16 (26)
13 2l9y_A CVNH-LYSM lectin; carbo 56.7 3.6 0.00012 32.3 1.2 30 7-37 82-111 (167)
14 1e0g_A Membrane-bound lytic mu 34.9 12 0.00043 22.1 0.9 24 7-33 22-45 (48)
15 2djp_A Hypothetical protein SB 34.9 20 0.00067 23.7 2.0 27 8-35 36-62 (77)
No 1
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=100.00 E-value=4e-55 Score=379.57 Aligned_cols=142 Identities=36% Similarity=0.550 Sum_probs=129.6
Q ss_pred cCCCCCccccCcEEEeecCCccCCCCeeccCCCCcccccccceEeeccc-----hhhhh---------------------
Q 045484 18 NLGNRDTERDRQKWLGAEYAQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM--------------------- 71 (179)
Q Consensus 18 ~~~~~~~~~~Gq~I~~G~~A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r--------------------- 71 (179)
-+=++|.+++||+|++|.+|++++||+| ||++||+||.|||||+ |||+|
T Consensus 104 yIlAp~gl~~Gd~I~sg~~a~i~~GN~l-----PL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~~~~~vrLP 178 (276)
T 3v2d_D 104 YIIAPDGLQVGQQVVAGPDAPIQVGNAL-----PLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLP 178 (276)
T ss_dssp EEECBTTCCTTCEECBSTTCCSSTTCEE-----EGGGSCTTCEEESEESSTTSCEEESCSTTCCEEEEEEETTEEEEECT
T ss_pred EEEeeCCCcCCCEEEeCCCCCCCCCCee-----hhhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEecCCEEEEECC
Confidence 3558999999999999999999999999 5789999999999998 88886
Q ss_pred -hhhheEeccceEeEeeeecCCCchhhhhhhhhhhhhcccCCCCCeeeeeeCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 045484 72 -TLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAGQSHWLGQRPVIRGVPMNPVDHPRGRGEGRGKSSGNHGRCSLTPW 150 (179)
Q Consensus 72 -~~ik~v~~~CrAtIG~Va~ggsN~~h~~k~lgKAGr~r~lg~RP~VRGvaMNpvdHPhGGG~gk~~~~~~~g~~~~tpW 150 (179)
+++++|+++|+||||+| +|.+|.+++++|||++||+++||+||||||||||||||||||+++ +|++|+|||
T Consensus 179 SGe~r~i~~~c~AtIG~V----sn~~~~~~~lgKAGr~rw~g~rP~VRGVAMNPVDHPHGGGeGr~~----~g~~p~spw 250 (276)
T 3v2d_D 179 SGELRKVHGECYATVGAV----GNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRAP----RGRPPASPW 250 (276)
T ss_dssp TSCEEEEETTCEEEESCB----SCGGGGGCCCCSHHHHHHTTBCCCCCGGGSCTTTCTTCCCSSCCC----CCSSCBCTT
T ss_pred CCCeEEEcccCeEEEEee----cCcchhhcEeccCcccccCCCCCccCeEecCCccCCCcCcCCCCC----CCCCCcCcc
Confidence 46789999999999999 899999999999999999999999999999999999999999997 568999999
Q ss_pred CccccceecCccccCccccceeeee
Q 045484 151 GKPCKWCKTASRKKKRKFSCLIILS 175 (179)
Q Consensus 151 G~~~kg~kTr~~kk~~k~~~~~i~~ 175 (179)
|+++||+|||++ +|++|.+|++
T Consensus 251 G~~~kG~kTr~~---~k~s~~~iv~ 272 (276)
T 3v2d_D 251 GWQTKGLKTRKR---RKPSSRFIIA 272 (276)
T ss_dssp SCBCSSCCCSCT---TCGGGGGEEE
T ss_pred cccccCCCCCCC---CCCCCCEEEe
Confidence 999999999986 4555555654
No 2
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=100.00 E-value=5.3e-55 Score=378.00 Aligned_cols=138 Identities=33% Similarity=0.558 Sum_probs=126.1
Q ss_pred cCCCCCccccCcEEEeecCCccCCCCeeccCCCCcccccccceEeeccc-----hhhhh---------------------
Q 045484 18 NLGNRDTERDRQKWLGAEYAQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM--------------------- 71 (179)
Q Consensus 18 ~~~~~~~~~~Gq~I~~G~~A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r--------------------- 71 (179)
-+=++|.+++||+|++|.+|++++||+| ||++||+||.|||||+ |||+|
T Consensus 102 YIlAp~gl~~Gd~I~sg~~a~i~~GN~l-----PL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~~~~~vrLP 176 (271)
T 3r8s_C 102 YILAPKGLKAGDQIQSGVDAAIKPGNTL-----PMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLR 176 (271)
T ss_dssp EEECBTTCCSSCBCCBSSSSCSSTTCEE-----EGGGSCTTCEEESCCSSTTTCCCSCCSTTCCEEEEECSTTEEEEECT
T ss_pred EEEeeCCCcCCCEEEECCCCCCCcCcEe-----ehhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEecCCEEEEECC
Confidence 4458999999999999999999999999 5789999999999999 88886
Q ss_pred -hhhheEeccceEeEeeeecCCCchhhhhhhhhhhhhcccCCCCCeeeeeeCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 045484 72 -TLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAGQSHWLGQRPVIRGVPMNPVDHPRGRGEGRGKSSGNHGRCSLTPW 150 (179)
Q Consensus 72 -~~ik~v~~~CrAtIG~Va~ggsN~~h~~k~lgKAGr~r~lg~RP~VRGvaMNpvdHPhGGG~gk~~~~~~~g~~~~tpW 150 (179)
+++++|+++|+||||+| +|.+|.+++++|||++||+++||+||||||||||||||||||+ + +|++|+|||
T Consensus 177 SGe~r~i~~~c~ATIG~V----sn~~~~~~~lgKAGr~rw~g~rP~VRGVAMNPVDHPHGGGeGk-~----ggr~p~tPW 247 (271)
T 3r8s_C 177 SGEMRKVEADCRATLGEV----GNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGR-N----FGKHPVTPW 247 (271)
T ss_dssp TSCEEEEETTCEEEESCB----SCSGGGGCCCCSHHHHHTTTBCCCCCGGGSCTTTCSSCCCSSS-C----CCSCCBCTT
T ss_pred CCCeEEEcccCeEEEEee----cCcchhhcEecccccccCCCCCCccCeEeeCCccCCccCcCCC-C----CCCCCCCcc
Confidence 46789999999999999 8999999999999999999999999999999999999999999 5 458999999
Q ss_pred CccccceecCccccCcccc
Q 045484 151 GKPCKWCKTASRKKKRKFS 169 (179)
Q Consensus 151 G~~~kg~kTr~~kk~~k~~ 169 (179)
|+++||+|||++|++++||
T Consensus 248 G~~tkG~kTr~~k~s~~~i 266 (271)
T 3r8s_C 248 GVQTKGKKTRSNKRTDKFI 266 (271)
T ss_dssp SCBCTTCCCCCCSTTGGGE
T ss_pred cccccCcccCCCCCCCCEE
Confidence 9999999999844466543
No 3
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.5e-55 Score=378.18 Aligned_cols=140 Identities=31% Similarity=0.540 Sum_probs=127.4
Q ss_pred ccCCCCCccccCcEEEeecCCccCCCCeeccCCCCcccccccceEeeccc-----hhhhh--------------------
Q 045484 17 QNLGNRDTERDRQKWLGAEYAQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM-------------------- 71 (179)
Q Consensus 17 ~~~~~~~~~~~Gq~I~~G~~A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r-------------------- 71 (179)
.-.=+++.+++||+|++|.+|+|++||+| ||++||+||.|||||+ |||+|
T Consensus 98 ~yIlAp~gl~~Gd~I~sg~~a~i~~GN~l-----PL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~ke~~~~~vrL 172 (269)
T 3bbo_E 98 RYILHPRGAIIGDTIVSGTEVPIKMGNAL-----PLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKL 172 (269)
T ss_dssp CCCCCCSSCSSCCCCCCSSSCCCSSCSCE-----EGGGCSSCSSCCCCCSSSSCCCSSCCTTTCCCBCCSSCSTTCCCBC
T ss_pred EEEEchhhcccccEEEECCCCCCCcCCEe-----EeccCCCCCEEEeEeccCCCCceEEeeCCCEEEEEEecCCEEEEEC
Confidence 45678999999999999999999999999 5789999999999998 88886
Q ss_pred --hhhheEeccceEeEeeeecCCCchhhhhhhhhhhhhcccCCCCCeeeeeeCCCCcCCCCCCCCCCCCCCCCCCC-CCC
Q 045484 72 --TLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAGQSHWLGQRPVIRGVPMNPVDHPRGRGEGRGKSSGNHGRC-SLT 148 (179)
Q Consensus 72 --~~ik~v~~~CrAtIG~Va~ggsN~~h~~k~lgKAGr~r~lg~RP~VRGvaMNpvdHPhGGG~gk~~~~~~~g~~-~~t 148 (179)
+++++|+++|+||||+| +|.+|.+++++|||++||+++||+||||||||||||||||||+++ +||+ |+|
T Consensus 173 PSGe~r~v~~~c~AtIG~V----sn~~~~~~~lgKAGr~rw~g~rP~VRGvAMNPVDHPHGGGeGr~~----~Gr~~p~t 244 (269)
T 3bbo_E 173 PSGEVRLISKNCSATVGQV----GNVGVNQKRLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAP----IGRKSPTT 244 (269)
T ss_dssp STTCBCCCCSSCEECSCCC----CCSHHHHSCCCSSSSSSTTTCSCSCCCCCSCTTTSSSCCSSSCCC----TTSSCCSS
T ss_pred CCCCEEEEchhhheeEeee----cCchhhhcchhhhhhcccCCCCCcccceeeccccCCCCcCCCcCC----CCCCCCCC
Confidence 46788999999999999 899999999999999999999999999999999999999999997 5675 999
Q ss_pred CCCccccceecCcccc-Ccccc
Q 045484 149 PWGKPCKWCKTASRKK-KRKFS 169 (179)
Q Consensus 149 pWG~~~kg~kTr~~kk-~~k~~ 169 (179)
|||+++||+|||+++| +++||
T Consensus 245 pWG~~~kg~kTr~~~k~s~~~i 266 (269)
T 3bbo_E 245 PWGYPALGRRSRKRNKYSDNFI 266 (269)
T ss_dssp SCCCSCCCCCCCSSSCCCCBCC
T ss_pred CCccCcCCccCCCCCCCCCceE
Confidence 9999999999998644 44443
No 4
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=100.00 E-value=8e-44 Score=303.89 Aligned_cols=110 Identities=22% Similarity=0.294 Sum_probs=103.3
Q ss_pred ccCCCCCccccCcEEEeecCCccCCCCeeccCCCCcccccccceEeeccc-----hhhhh--------------------
Q 045484 17 QNLGNRDTERDRQKWLGAEYAQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM-------------------- 71 (179)
Q Consensus 17 ~~~~~~~~~~~Gq~I~~G~~A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r-------------------- 71 (179)
.-+=+++.+++||+|++|.+|++++||+| ||++||+||.|||||+ |||+|
T Consensus 67 ~yIlAp~gl~vGd~I~sg~~a~i~~GN~l-----PL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~ke~~~~~vrL 141 (240)
T 1vq8_A 67 RLILAPEGVGVGDELQVGVSAEIAPGNTL-----PLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKL 141 (240)
T ss_dssp EEECCBTTCBTTCEEEBSTTCCSCTTCEE-----EGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECCSSCEEEEC
T ss_pred EEEEecCCCccCeEEEECCCccccccccc-----cccCCCCCCEEEeEeccCCCCceEEEeCCCeEEEEEecCCEEEEEC
Confidence 34668999999999999999999999999 5799999999999999 88887
Q ss_pred --hhhheEeccceEeEeeeecCCCchhhhhhhhhhhhhcccCC-----CCCeeeeeeCCCCcCCCCCCCCC
Q 045484 72 --TLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAGQSHWLG-----QRPVIRGVPMNPVDHPRGRGEGR 135 (179)
Q Consensus 72 --~~ik~v~~~CrAtIG~Va~ggsN~~h~~k~lgKAGr~r~lg-----~RP~VRGvaMNpvdHPhGGG~gk 135 (179)
+++++|+++|+||||+| +|.+|.+++|+|||++||++ +||+||||||||||||||||||+
T Consensus 142 PSGe~r~v~~~crAtIG~V----sn~~~~~~~lgKAG~~r~~gk~k~~~rP~VRGvAMNPVDHPHGGGeg~ 208 (240)
T 1vq8_A 142 PSGEMKRLDPQCRATIGVV----AGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQ 208 (240)
T ss_dssp TTSCEEEECTTCEEEESCB----TTTTTTTSCCCSHHHHHHHHTTSSCCCSCCCGGGSCGGGCTTCCSSSC
T ss_pred CCCCEEEEechheeeEEEe----cCcchhccccccCccccccccccCCCCCceeeeeeccccCCCCCCCCC
Confidence 46789999999999999 89999999999999999997 89999999999999999999999
No 5
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.4e-43 Score=300.86 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=109.4
Q ss_pred ccCCCCCccccCcEEEeecCCccCCCCeeccCCCCcccccccceEeeccc-----hhhhh--------------------
Q 045484 17 QNLGNRDTERDRQKWLGAEYAQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM-------------------- 71 (179)
Q Consensus 17 ~~~~~~~~~~~Gq~I~~G~~A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r-------------------- 71 (179)
.-+=++|.+++||+|++|.+|++++||+| ||++||+||.|||||+ |||+|
T Consensus 69 ~YIlApeGl~vGd~I~sG~~a~i~~GN~L-----PL~~iP~GT~I~NIE~~pG~gg~laRsAGt~A~ii~k~~~~~~vrL 143 (239)
T 3j21_B 69 KLIIAPEGLLVGQEIYIGPDAPIAVGNTL-----PLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREPDKVIVQL 143 (239)
T ss_dssp EEECCBTTCCTTCEEEESSSSCSSTTCEE-----ETTTSCTTCEEESCCSSSSSCCCSCCSTTCCEEEEEECSSCEEEEC
T ss_pred EEEEccccCccccEEEECCCCCCCcCCEe-----eccccCCCCEEEeEEecCCCceeEEEecCCeEEEEEecCCEEEEEc
Confidence 34568999999999999999999999999 5789999999999998 88886
Q ss_pred --hhhheEeccceEeEeeeecCCCchhhhhhhhhhhhhcccC-----CCCCeeeeeeCCCCcCCCCCCCCCCCCCCCCCC
Q 045484 72 --TLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAGQSHWL-----GQRPVIRGVPMNPVDHPRGRGEGRGKSSGNHGR 144 (179)
Q Consensus 72 --~~ik~v~~~CrAtIG~Va~ggsN~~h~~k~lgKAGr~r~l-----g~RP~VRGvaMNpvdHPhGGG~gk~~~~~~~g~ 144 (179)
+++++|+++|+||||+| +|.+|.+++++|||++||+ ++||+||||||||||||||| ++++ +|+
T Consensus 144 PSGe~r~v~~~c~AtIG~V----sn~~~~~~~lgKAGr~r~~~k~k~g~rP~VRGVAMNPVDHPHGG--g~~~----~Gr 213 (239)
T 3j21_B 144 PSGELKAFNPMCRATIGVV----AGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGG--KEHH----PGK 213 (239)
T ss_dssp TTSCEEEECTTCEEEESCB----SCCSTTTSCCCSHHHHHHHHTSSCCCCSCCCSTTSCTTTCSSCC--SSSS----CSS
T ss_pred CCCCEEEEeccCeEEEeec----cCcccccceeeecChhhccchhhcCCCceecceeeccccCCCCC--CCCC----CCc
Confidence 46789999999999999 8899999999999999999 99999999999999999999 6665 456
Q ss_pred C-CCCCCCc
Q 045484 145 C-SLTPWGK 152 (179)
Q Consensus 145 ~-~~tpWG~ 152 (179)
+ |+|+|.-
T Consensus 214 ps~vsr~ap 222 (239)
T 3j21_B 214 PTTTSRRAP 222 (239)
T ss_dssp CSCBCSSCC
T ss_pred cCCcCCCCC
Confidence 4 7899963
No 6
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=100.00 E-value=2.2e-43 Score=304.16 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=103.5
Q ss_pred ccCCCCCccccCcEEEeecCCccCCCCeeccCCCCcccccccceEeeccc-----hhhhh--------------------
Q 045484 17 QNLGNRDTERDRQKWLGAEYAQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM-------------------- 71 (179)
Q Consensus 17 ~~~~~~~~~~~Gq~I~~G~~A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r-------------------- 71 (179)
.-+=++|.|++||+|++|.+|++++||+| ||++||+||.|||||+ |||+|
T Consensus 74 ~yIlApeGl~vGd~I~sG~~a~i~~GN~L-----PL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~v 148 (261)
T 3iz5_B 74 ELFVAAEGMYTGQFVYCGRRATLSIGNVL-----PIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRI 148 (261)
T ss_dssp CEEECBTTCBTTCEEEBSTTCCSCTTCEE-----EGGGSCTTEEEESBCSSTTSCCCBSCSTTCCEEEEECSSCSSCEEE
T ss_pred EEEEeccCCCCCCEEEeCCCCCCCCCCEe-----ccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEeccCCCEEEE
Confidence 33557899999999999999999999999 5799999999999998 88886
Q ss_pred ----hhhheEeccceEeEeeeecCCCchhhhhhhhhhhhhcccC-----CCCCeeeeeeCCCCcCCCCCCCCCCC
Q 045484 72 ----TLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAGQSHWL-----GQRPVIRGVPMNPVDHPRGRGEGRGK 137 (179)
Q Consensus 72 ----~~ik~v~~~CrAtIG~Va~ggsN~~h~~k~lgKAGr~r~l-----g~RP~VRGvaMNpvdHPhGGG~gk~~ 137 (179)
+++++|+++|+||||+| +|.+|.+++|+|||++||+ ++||+||||||||||||||||||++.
T Consensus 149 rLPSGe~r~v~~~CrATIG~V----sn~~~~~k~lgKAGr~r~~~k~k~g~rP~VRGVAMNPVDHPHGGGe~q~i 219 (261)
T 3iz5_B 149 KLPSGAKKIVPSSCRAMIGQV----AGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHI 219 (261)
T ss_dssp ECTTSCEEEECTTCEEEESCB----SSTTTTTSCCCCHHHHHHHHHTSSCCCSCCCTTTSCTTTCTTCCSSSCCC
T ss_pred ECCCCCEEEEecCCcEEEEEe----cCCccccceecccchhhhhhhccCCCCCccceeeeCCccCCCCCCCCCCC
Confidence 35678999999999999 8889999999999999998 99999999999999999999999873
No 7
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 4b6a_A 1s1i_B
Probab=100.00 E-value=2e-43 Score=301.92 Aligned_cols=112 Identities=23% Similarity=0.273 Sum_probs=103.6
Q ss_pred ccCCCCCccccCcEEEeecCCccCCCCeeccCCCCcccccccceEeeccc-----hhhhh--------------------
Q 045484 17 QNLGNRDTERDRQKWLGAEYAQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM-------------------- 71 (179)
Q Consensus 17 ~~~~~~~~~~~Gq~I~~G~~A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r-------------------- 71 (179)
.-+=++|.|++||+|++|.+|++++||+| ||++||+||.|||||+ |||+|
T Consensus 73 ~yIlApeGl~vGd~I~sg~~a~i~~GN~l-----PL~~IP~GT~IhNIE~~pG~gg~laRsAGt~A~ii~k~~e~~~~~v 147 (243)
T 3jyw_B 73 EIFIANEGVHTGQFIYAGKKASLNVGNVL-----PLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRV 147 (243)
T ss_dssp CBCCCCTTCCSSCBCCCSTTCCCCBTCEE-----ESSSSCTTEEEESBCCSSCCSCCBCCSSSCCEEECCCSSSCSSBCE
T ss_pred EEEEeecCCccccEEEECCCCCCCcCCEe-----ccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEEccCCCEEEE
Confidence 44668999999999999999999999999 5689999999999998 88886
Q ss_pred ----hhhheEeccceEeEeeeecCCCchhhhhhhhhhhhhcccC-----CCCCeeeeeeCCCCcCCCCCCCCCCC
Q 045484 72 ----TLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAGQSHWL-----GQRPVIRGVPMNPVDHPRGRGEGRGK 137 (179)
Q Consensus 72 ----~~ik~v~~~CrAtIG~Va~ggsN~~h~~k~lgKAGr~r~l-----g~RP~VRGvaMNpvdHPhGGG~gk~~ 137 (179)
+++|+|+++|+||||+| +|.+|.+++++|||++||+ ++||+||||||||||||||||||++.
T Consensus 148 rLPSGe~r~v~~~c~ATIG~V----sn~~~~~~~l~KAGr~r~~~k~k~~~rP~VRGVAMNpVDHPHGGGe~q~i 218 (243)
T 3jyw_B 148 RLPSGAKKVISSDARGVIGVI----AGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHI 218 (243)
T ss_dssp ECSSSCCCCBSSCCEEEESCC----SCCCSSSSCCSCSTTTTTSTTTSCSCCSCCCTTTSCTTTSTTCCTTTTCC
T ss_pred ECCCCCEEEEeccCeEEEEec----cCCccccceecccChhhhhhhccCCCCCccCceeeCCccCCCCCCCCCCC
Confidence 35678999999999999 7889999999999999998 89999999999999999999999873
No 8
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=100.00 E-value=5e-43 Score=302.25 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=103.1
Q ss_pred cCCCCCccccCcEEEeecCCccCCCCeeccCCCCcccccccceEeeccc-----hhhhh---------------------
Q 045484 18 NLGNRDTERDRQKWLGAEYAQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM--------------------- 71 (179)
Q Consensus 18 ~~~~~~~~~~Gq~I~~G~~A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r--------------------- 71 (179)
-+=++|.|++||+|++|.+|+|++||+| ||++||+||.|||||+ |||+|
T Consensus 76 YIlApeGl~vGd~I~sg~~a~i~~GN~L-----PL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vr 150 (264)
T 4a17_A 76 HFIAAEGQYSGQYVYCGLKAQIAVGNVL-----PINRIPEGTVVCNVEEKVGDRGTFSRASGCYATIIGHSEDGDKTRIR 150 (264)
T ss_dssp EEECBTTCBTTCEEEEESSCCCCTTCEE-----EGGGSCTTCEEESBCSSTTCSCCBCCSTTCCEEEEEECSSSCEEEEE
T ss_pred EEEeecCCccccEEEECCCCCCCcCCcc-----cHhhCCCCCEEEEEEecCCCcceEEEeCCCeEEEEEEccCCCEEEEE
Confidence 4558999999999999999999999999 5799999999999999 88886
Q ss_pred ---hhhheEeccceEeEeeeecCCCchhhhhhhhhhhhhcccC-----CCCCeeeeeeCCCCcCCCCCCCCCCC
Q 045484 72 ---TLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAGQSHWL-----GQRPVIRGVPMNPVDHPRGRGEGRGK 137 (179)
Q Consensus 72 ---~~ik~v~~~CrAtIG~Va~ggsN~~h~~k~lgKAGr~r~l-----g~RP~VRGvaMNpvdHPhGGG~gk~~ 137 (179)
+++++|+++|+||||+| +|.+|.+++|+|||++||+ ++||+||||||||||||||||||++.
T Consensus 151 LPSGe~r~v~~~CrATIG~V----sn~~~~~~~l~KAGr~r~~~k~k~~~rP~VRGVAMNPVDHPHGGGe~q~i 220 (264)
T 4a17_A 151 LPSGARKTIPGSCRATVGIV----AGGGRTDKPILKAGNQFHKYARKRKSWPRVRGVAMNPVDHPHGGGNHQHI 220 (264)
T ss_dssp CTTSCEEEEETTCEEEESCB----SSTTGGGSCCCCHHHHHHHHHTSSCCCSCCCTTTSCTTTCSSCCSSSCCC
T ss_pred CCCCCEEEEeccCcEEEEec----cCCccccceeeecchhhhhhhccCCCCCCccceeeCCccCCCCCCCCCCC
Confidence 35678999999999999 8889999999999999997 99999999999999999999999873
No 9
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=100.00 E-value=8.3e-42 Score=280.79 Aligned_cols=105 Identities=25% Similarity=0.323 Sum_probs=98.5
Q ss_pred ccCCCCCccccCcEEEeecCCccCCCCeeccCCCCcccccccceEeeccc-----hhhhh--------------------
Q 045484 17 QNLGNRDTERDRQKWLGAEYAQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM-------------------- 71 (179)
Q Consensus 17 ~~~~~~~~~~~Gq~I~~G~~A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r-------------------- 71 (179)
.-.=+++.+++||+|++|++|++++||+| ||++||+||.|||||+ |||+|
T Consensus 42 ~yilAp~gl~~Gd~I~~g~~a~i~~GN~l-----pL~~iP~Gt~I~NIE~~pG~gg~laRsAGt~a~ii~ke~~~~~vrL 116 (178)
T 1giy_D 42 RYIIAPKNLKVGMEIMSGPDADIKIGNAL-----PLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRL 116 (178)
T ss_pred EEEECccCCccccEEEECCCCccccCCCc-----ccccCCCCCEEEeEeccCCCCeEEEEeCCCeEEEEEecCCeEEEEC
Confidence 34568999999999999999999999999 5789999999999998 88886
Q ss_pred --hhhheEeccceEeEeeeecCCCchhhhhhhhhhhhhcccCC-----CCCeeeeeeCCCCcCCCC
Q 045484 72 --TLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAGQSHWLG-----QRPVIRGVPMNPVDHPRG 130 (179)
Q Consensus 72 --~~ik~v~~~CrAtIG~Va~ggsN~~h~~k~lgKAGr~r~lg-----~RP~VRGvaMNpvdHPhG 130 (179)
+++|+|+++|+||||+| +|.+|.+++++|||++||++ +||+||||||||||||||
T Consensus 117 PSGe~r~v~~~c~AtIG~V----sn~~~~~~~lgKAG~~r~~gk~k~~~rP~VRGvAMNpvDHPHG 178 (178)
T 1giy_D 117 ASGEVRMILGKCRATVGEV----GNGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFG 178 (178)
T ss_pred CCCCEEEEcccCcEEEEEe----cCcchhcCeecccchhhcCCCccCCcCCccceeeeCCccCCCC
Confidence 46789999999999999 89999999999999999999 999999999999999998
No 10
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=99.84 E-value=3.1e-22 Score=158.37 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=73.9
Q ss_pred ccCCCCCccccCcEEEeecC-----CccCCCCeeccCCCCcccccccceEeeccc-----hhhhh---------------
Q 045484 17 QNLGNRDTERDRQKWLGAEY-----AQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM--------------- 71 (179)
Q Consensus 17 ~~~~~~~~~~~Gq~I~~G~~-----A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r--------------- 71 (179)
.-.=+++.+++||+|++|.+ +++++||+| ||++||+||.|||||+ |||+|
T Consensus 24 ~yIlAp~gl~~Gd~I~s~~~~g~~a~~i~~GN~l-----pL~~iP~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~ke~~~ 98 (136)
T 2ftc_B 24 RWIIATENMQAGDTILNSNHIGRMAVAAREGDAH-----PLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGT 98 (136)
T ss_pred EEEEeecCCcCCCEEEECCcccccccccCcCcEE-----EecccCCCCEEEEEeccCCCCcEEEEeCCCeEEEEEecCCE
Confidence 35668999999999999888 799999999 5789999999999998 88887
Q ss_pred -------hhhheEeccceEeEeeeecCCCchhhhhhhhhhhh
Q 045484 72 -------TLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAG 106 (179)
Q Consensus 72 -------~~ik~v~~~CrAtIG~Va~ggsN~~h~~k~lgKAG 106 (179)
+++|+|+++||||||+| ||.+|.++.++|||
T Consensus 99 ~~vrLPSGe~r~v~~~c~AtIG~V----sn~~~~~~~lgKAG 136 (136)
T 2ftc_B 99 AIIQLPSKRQMQVLETCVATVGRV----SNVDHNKRVIGKAG 136 (136)
T ss_pred EEEECCCCCeEEECcCCcEEEEEe----cChhhccceeccCC
Confidence 46788999999999999 89999999999998
No 11
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=99.73 E-value=8.5e-19 Score=138.79 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=61.0
Q ss_pred ccCCCCCccccCcEEEeecCCccCCCCeeccCCCCcccccccceEeeccc-----hhhhh--------------------
Q 045484 17 QNLGNRDTERDRQKWLGAEYAQLHRHSSLGFSALPFSTITLLNAISPVKL-----NQLVM-------------------- 71 (179)
Q Consensus 17 ~~~~~~~~~~~Gq~I~~G~~A~i~~GN~LPlsalPlg~IP~Gt~I~nIE~-----Gql~r-------------------- 71 (179)
.-.=+++.+++||+|++|++|++++||+| ||++||+||.|||||+ |||+|
T Consensus 42 ~yIlAp~gl~~Gd~I~~g~~a~i~~GN~l-----pL~~iP~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~ke~~~~~vrL 116 (137)
T 1rl2_A 42 RYIIAPKNLKVGMEIMSGPDADIKIGNAL-----PLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRL 116 (137)
T ss_dssp EEEECCTTCCTTCEECBSTTCCSCTTCEE-----EGGGSCTTCEEESEESSTTSCEEESSSSSCCEEEEEEETTEEEEEC
T ss_pred EEEEecccCccceEEEECCccccccCCEe-----ehhhCCCCCEEEEEEccCCCCcEEEEeCCCeEEEEEEcCCEEEEEC
Confidence 34568999999999999999999999999 5789999999999998 88887
Q ss_pred --hhhheEeccceEeEeee
Q 045484 72 --TLILKLEVACHLLVCML 88 (179)
Q Consensus 72 --~~ik~v~~~CrAtIG~V 88 (179)
+++|+|+++|+||||+|
T Consensus 117 PSGe~r~v~~~c~AtIG~V 135 (137)
T 1rl2_A 117 ASGEVRMILGKCRATVGEV 135 (137)
T ss_dssp TTSCEEEEETTSEEEESCC
T ss_pred CCCCeEEECCcCcEEEEEc
Confidence 46789999999999999
No 12
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=57.12 E-value=6.7 Score=22.83 Aligned_cols=11 Identities=36% Similarity=0.725 Sum_probs=7.6
Q ss_pred cCCCCCCCCCC
Q 045484 126 DHPRGRGEGRG 136 (179)
Q Consensus 126 dHPhGGG~gk~ 136 (179)
-||||||-|+.
T Consensus 6 gqp~gg~wgqp 16 (26)
T 1oei_A 6 GQPHGGGWGQP 16 (26)
T ss_dssp SSTTSSSSTTT
T ss_pred CCccCCcCCCC
Confidence 47888876654
No 13
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=56.69 E-value=3.6 Score=32.31 Aligned_cols=30 Identities=30% Similarity=0.206 Sum_probs=24.5
Q ss_pred eeehhhhhhhccCCCCCccccCcEEEeecCC
Q 045484 7 VRQSEIDRRNQNLGNRDTERDRQKWLGAEYA 37 (179)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~Gq~I~~G~~A 37 (179)
++..||-+.| ++.+++++|+||++.+-...
T Consensus 82 ~~~~~l~~~N-~~~~~~~i~~Gq~L~ip~~~ 111 (167)
T 2l9y_A 82 CDFHEIARRN-NIQNEDLIYPGQVLQVPTKG 111 (167)
T ss_dssp CCHHHHHHHH-TCCGGGCCCTTEEEEESCCC
T ss_pred CCHHHHHHHc-CCCCcccccCCCEEEEcCCC
Confidence 3456888888 79999999999999986543
No 14
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=34.95 E-value=12 Score=22.06 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=17.4
Q ss_pred eeehhhhhhhccCCCCCccccCcEEEe
Q 045484 7 VRQSEIDRRNQNLGNRDTERDRQKWLG 33 (179)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~Gq~I~~ 33 (179)
+...+|.+-|. +++.+++||++.+
T Consensus 22 ~~~~~l~~~N~---~~~~l~~G~~l~i 45 (48)
T 1e0g_A 22 VNIKDVMRWNS---DTANLQPGDKLTL 45 (48)
T ss_dssp CCHHHHHHHCS---CGGGCCTTEEEEC
T ss_pred cCHHHHHHhCC---CCCcCCcCCEEEE
Confidence 34456666665 7889999999875
No 15
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.92 E-value=20 Score=23.74 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=20.4
Q ss_pred eehhhhhhhccCCCCCccccCcEEEeec
Q 045484 8 RQSEIDRRNQNLGNRDTERDRQKWLGAE 35 (179)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~Gq~I~~G~ 35 (179)
...+|.+-| ++-+++.+++||++.+=.
T Consensus 36 ~~~~l~~~N-~l~~~~~l~~Gq~l~iP~ 62 (77)
T 2djp_A 36 TMEQIKRAN-RLYTNDSIFLKKTLYIPI 62 (77)
T ss_dssp CHHHHHHHH-TCCCSSCGGGSSCEEEEE
T ss_pred CHHHHHHHc-CCCCccccCCCCEEEECC
Confidence 345677777 567789999999998654
Done!