RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 045484
         (179 letters)



>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein
           L2 {Escherichia coli [TaxId: 562]}
          Length = 145

 Score = 68.8 bits (168), Expect = 6e-16
 Identities = 38/83 (45%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 86  CMLGPSSTTLSHEAKVLRKAGQSHWLGQRPVIRGVPMNPVDHPRGRGEGRGKSSGNHGRC 145
             LG       H  +VL KAG + W G RP +RG  MNPVDHP G GEGR       G+ 
Sbjct: 65  ATLGEVGNA-EHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRN-----FGKH 118

Query: 146 SLTPWGKPCKWCKTASRKKKRKF 168
            +TPWG   K  KT S K+  KF
Sbjct: 119 PVTPWGVQTKGKKTRSNKRTDKF 141


>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein
           L2 {Thermus thermophilus [TaxId: 274]}
          Length = 147

 Score = 67.2 bits (164), Expect = 2e-15
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 6/77 (7%)

Query: 97  HEAKVLRKAGQSHWLGQRPVIRGVPMNPVDHPRGRGEGRGKSSGNHGRCSLTPWGKPCKW 156
           H+  VL KAG+S WLG+RP +RG  MNPVDHP G GEGR       GR   +PWG   K 
Sbjct: 75  HKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRAP----RGRPPASPWGWQTKG 130

Query: 157 CKTASRKKKRKFSCLII 173
            KT  RK+++  S  II
Sbjct: 131 LKT--RKRRKPSSRFII 145


>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein
           L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
          Length = 147

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 97  HEAKVLRKAGQSHWL-----GQRPVIRGVPMNPVDHPRGRGEGRGKSSGNHGRCSLTPWG 151
              K   KAG  H        + P +RGV MN VDHP G G  +             P G
Sbjct: 74  RTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKP-KSISRNAPPG 132

Query: 152 KPCKWCKTASRKKKRK 167
           +       AS++  R 
Sbjct: 133 RKVG--DIASKRTGRG 146


>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus),
           pcc7942 [TaxId: 1129]}
          Length = 98

 Score = 27.4 bits (61), Expect = 0.40
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 14/63 (22%)

Query: 58  LNAISPVKLNQLVMTL----------ILKL----EVACHLLVCMLGPSSTTLSHEAKVLR 103
           L AI+P     L              +L L    E+    L   +G S + +SH+ + LR
Sbjct: 2   LQAIAPEVAQSLAEFFAVLADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLR 61

Query: 104 KAG 106
              
Sbjct: 62  NLR 64


>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein
           CadC {Staphylococcus aureus [TaxId: 1280]}
          Length = 108

 Score = 27.5 bits (61), Expect = 0.46
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 57  LLNAIS-PVKLNQLVMTLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAG 106
           +L AI+   +  ++   L    E+    +  +LG +    SH  + L K G
Sbjct: 24  ILKAIADENRA-KITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQG 73


>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 94

 Score = 27.0 bits (60), Expect = 0.60
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 57  LLNAIS-PVKLNQLVMTLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAG 106
           +  A+    ++   +M L+   E +   +   L  S + +SH+ K+L+   
Sbjct: 11  IFKALGDYNRIR--IMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVH 59


>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 190

 Score = 26.2 bits (57), Expect = 2.2
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 57  LLNAIS-PVKLNQLVMTLILKLEVACHLLVCMLGPSSTTLSHEAKVLRKAG 106
           ++  +    +    ++ L+   E+    L  +LG +  T+ H  + L++AG
Sbjct: 12  VIKVMLEDTRRK--ILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAG 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 641,427
Number of extensions: 26700
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 10
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)