BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045485
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TP9|A Chain A, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|B Chain B, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|C Chain C, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|D Chain D, Prx D (Type Ii) From Populus Tremula
Length = 162
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/163 (58%), Positives = 117/163 (71%), Gaps = 2/163 (1%)
Query: 2 AAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVE 61
A I+VGD LPD L+YFD +LQ ++V L + KK ILF VPGAFTPTCS KH+PGF+E
Sbjct: 2 APIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIE 61
Query: 62 KSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDK 121
K+ ELKSKGV + CISVND FVMKAW ++ N V L+DG+ +T A+G ELDL +K
Sbjct: 62 KAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEK 121
Query: 122 PMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 164
GLG RSRR+ALL ++ VK N+E GG FT S AED+LK L
Sbjct: 122 --GLGTRSRRFALLVDDLKVKAANIEGGGEFTVSSAEDILKDL 162
>pdb|4F82|A Chain A, X-Ray Crystal Structure Of A Putative Thioredoxin
Reductase From Burkholderia Cenocepacia
pdb|4F82|B Chain B, X-Ray Crystal Structure Of A Putative Thioredoxin
Reductase From Burkholderia Cenocepacia
Length = 176
Score = 149 bits (375), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 8/167 (4%)
Query: 4 ISVGDKLPDATL-SYFDSAGELQTI-----TVSDLTSNKKAILFAVPGAFTPTCSQKHLP 57
I VGD LPDA L + D A E T+ +V D + K+ ++F +PGAFTPTCS +H+P
Sbjct: 10 IQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVP 69
Query: 58 GFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELD 117
G+VE + +L++ G+D + C+SVNDAFVM AW +L +V +++DG+ FT A+G D
Sbjct: 70 GYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQD 129
Query: 118 LSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 164
LS + G+G+RS RYA++ + GVVK L +E G F S A +L L
Sbjct: 130 LSAR--GMGIRSLRYAMVIDGGVVKTLAVEAPGKFEVSDAASVLATL 174
>pdb|3UMA|A Chain A, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
pdb|3UMA|B Chain B, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
pdb|3UMA|C Chain C, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
Length = 184
Score = 142 bits (358), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 105/162 (64%), Gaps = 4/162 (2%)
Query: 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKS 63
I+VGDKLP+AT + G ++ +T L K+ +LFAVPGAFTPTCS HLPG++E
Sbjct: 26 IAVGDKLPNATFKEKTADGPVE-VTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENR 84
Query: 64 AELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPM 123
+ ++GVD +A ++VND V AW + G ++ LSD N FTKAIG E+DLS
Sbjct: 85 DAILARGVDDIAVVAVNDLHVXGAWATHSGGXGKIHFLSDWNAAFTKAIGXEIDLSAGT- 143
Query: 124 GLGVRSRRYALLAENGVVKVLNLEEG-GAFTFSGAEDMLKAL 164
LG+RS+RY+ L E+GVVK LN+EE G T SGA L+ L
Sbjct: 144 -LGIRSKRYSXLVEDGVVKALNIEESPGQATASGAAAXLELL 184
>pdb|2WFC|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|C Chain C, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|D Chain D, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
Length = 167
Score = 140 bits (352), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 110/163 (67%), Gaps = 8/163 (4%)
Query: 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKS 63
I GDKLP T+ A + +++L + KK +LFAVPGAFTP S+ HLPG+VE++
Sbjct: 3 IKEGDKLPAVTVF---GATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQA 59
Query: 64 AELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPM 123
A + KGVDI+AC++VND+FVM AW + G +D+V +L+D G FTKA+ ELDLS
Sbjct: 60 AAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAV-- 117
Query: 124 GLG-VRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 164
LG VRS+RY+L+ E+GVV +N+E +G T S A ++L L
Sbjct: 118 -LGNVRSKRYSLVIEDGVVTKVNVEPDGKGLTCSLAPNILSQL 159
>pdb|2VL2|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL2|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 100/166 (60%), Gaps = 6/166 (3%)
Query: 1 SAAISVGDKLPDATLSYFDSAGEL-QTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGF 59
SA I VGD +P + F+ GE + +++L KK +LF VPGAFTP CS+ HLPGF
Sbjct: 11 SAPIKVGDAIP--AVEVFE--GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGF 66
Query: 60 VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLS 119
VE++ LK+KGV +VAC+SVNDAFV W +V LL+D G F K LD S
Sbjct: 67 VEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDS 126
Query: 120 DKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 164
+ R +R++++ ++G+VK LN+E +G T S A +++ L
Sbjct: 127 LVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTXSLAPNIISQL 172
>pdb|1OC3|A Chain A, Human Peroxiredoxin 5
pdb|1OC3|B Chain B, Human Peroxiredoxin 5
pdb|1OC3|C Chain C, Human Peroxiredoxin 5
pdb|2VL2|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 100/166 (60%), Gaps = 6/166 (3%)
Query: 1 SAAISVGDKLPDATLSYFDSAGEL-QTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGF 59
SA I VGD +P + F+ GE + +++L KK +LF VPGAFTP CS+ HLPGF
Sbjct: 11 SAPIKVGDAIP--AVEVFE--GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGF 66
Query: 60 VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLS 119
VE++ LK+KGV +VAC+SVNDAFV W +V LL+D G F K LD S
Sbjct: 67 VEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDS 126
Query: 120 DKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 164
+ R +R++++ ++G+VK LN+E +G T S A +++ L
Sbjct: 127 LVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 172
>pdb|3MNG|A Chain A, Wild Type Human Prxv With Dtt Bound As A Competitive
Inhibitor
Length = 173
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 100/166 (60%), Gaps = 6/166 (3%)
Query: 1 SAAISVGDKLPDATLSYFDSAGEL-QTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGF 59
SA I VGD +P + F+ GE + +++L KK +LF VPGAFTP CS+ HLPGF
Sbjct: 12 SAPIKVGDAIP--AVEVFE--GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGF 67
Query: 60 VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLS 119
VE++ LK+KGV +VAC+SVNDAFV W +V LL+D G F K LD S
Sbjct: 68 VEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDS 127
Query: 120 DKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 164
+ R +R++++ ++G+VK LN+E +G T S A +++ L
Sbjct: 128 LVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 173
>pdb|1HD2|A Chain A, Human Peroxiredoxin 5
pdb|1H4O|A Chain A, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|B Chain B, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|C Chain C, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|D Chain D, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|E Chain E, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|F Chain F, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|G Chain G, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|H Chain H, Monoclinic Form Of Human Peroxiredoxin 5
Length = 161
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 6/165 (3%)
Query: 2 AAISVGDKLPDATLSYFDSAGEL-QTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFV 60
A I VGD +P + F+ GE + +++L KK +LF VPGAFTP CS+ HLPGFV
Sbjct: 1 APIKVGDAIP--AVEVFE--GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFV 56
Query: 61 EKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSD 120
E++ LK+KGV +VAC+SVNDAFV W +V LL+D G F K LD S
Sbjct: 57 EQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSL 116
Query: 121 KPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 164
+ R +R++++ ++G+VK LN+E +G T S A +++ L
Sbjct: 117 VSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
>pdb|2VL9|A Chain A, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|B Chain B, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|C Chain C, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|D Chain D, Oxidized Form Of Human Peroxiredoxin 5
Length = 173
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 6/166 (3%)
Query: 1 SAAISVGDKLPDATLSYFDSAGEL-QTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGF 59
SA I VGD +P + F+ GE + +++L KK +LF VPGAFTP CS+ HLPGF
Sbjct: 12 SAPIKVGDAIP--AVEVFE--GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGF 67
Query: 60 VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLS 119
VE++ LK+KGV +VA +SVNDAFV W +V LL+D G F K LD S
Sbjct: 68 VEQAEALKAKGVQVVASLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDS 127
Query: 120 DKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 164
+ R +R++++ ++G+VK LN+E +G T S A +++ L
Sbjct: 128 LVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 173
>pdb|1URM|A Chain A, Human Peroxiredoxin 5, C47s Mutant
Length = 172
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 6/166 (3%)
Query: 1 SAAISVGDKLPDATLSYFDSAGEL-QTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGF 59
SA I VGD +P + F+ GE + +++L KK +LF VPGAFTP S+ HLPGF
Sbjct: 11 SAPIKVGDAIP--AVEVFE--GEPGNKVNLAELFKGKKGVLFGVPGAFTPGSSKTHLPGF 66
Query: 60 VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLS 119
VE++ LK+KGV +VAC+SVNDAFV W +V LL+D G F K LD S
Sbjct: 67 VEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDS 126
Query: 120 DKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 164
+ R +R++++ ++G+VK LN+E +G T S A +++ L
Sbjct: 127 LVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 172
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 109 bits (272), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 7/161 (4%)
Query: 7 GDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAEL 66
G K+P T + +T S+L NK I+F++PGAFTPTCS HLP + E +
Sbjct: 6 GKKVPQVTFRT-RQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVF 64
Query: 67 KSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLG 126
K GVD + +SVND FV AWKE+ ++ + + DGNG FT+ G + D +G G
Sbjct: 65 KKYGVDDILVVSVNDTFVXNAWKEDEK-SENISFIPDGNGEFTEGXGXLVGKED--LGFG 121
Query: 127 VRSRRYALLAENGVVKVLNL---EEGGAFTFSGAEDMLKAL 164
RS RY+ L +NGVV+ + E G F S A+ LK L
Sbjct: 122 KRSWRYSXLVKNGVVEKXFIEPNEPGDPFKVSDADTXLKYL 162
>pdb|2PWJ|A Chain A, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|B Chain B, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|C Chain C, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|D Chain D, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|E Chain E, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|F Chain F, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
Length = 171
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 5/141 (3%)
Query: 23 ELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA 82
+ T V+D+ +KK ++F +PGA+T CS KH+P + + K+KGVD V C+++ND
Sbjct: 31 KFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDP 90
Query: 83 FVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMG-LGVRSRRYALLAENGVV 141
+ + AW E + D + D +G F K++ DLS G LG+RS R++ +G V
Sbjct: 91 YTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLS---AGLLGIRSERWSAYVVDGKV 147
Query: 142 KVLNLEEGGA-FTFSGAEDML 161
K LN+EE + SGAE +L
Sbjct: 148 KALNVEESPSDVKVSGAETIL 168
>pdb|2XHF|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Alvinella
Pompejana
pdb|2XHF|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Alvinella
Pompejana
Length = 171
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 6/146 (4%)
Query: 2 AAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVE 61
+ I VGD +PD L Y D ++ + D+ +K ILF+V GAF P S H+P ++
Sbjct: 12 SPIKVGDIIPDV-LVYEDVPS--KSFPIHDVFRGRKGILFSVVGAFVPG-SNNHIPEYLS 67
Query: 62 KSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDK 121
+ K +G +ACI+VND FVM AW + + ++ +L+D +G FT+A+G ELD S K
Sbjct: 68 LYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELD-SSK 126
Query: 122 PMGLGVRSRRYALLAENGVVKVLNLE 147
+G RSRRYA+L ++ ++ ++ E
Sbjct: 127 MLG-NNRSRRYAMLIDDNKIRSVSTE 151
>pdb|4DSQ|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|C Chain C, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|D Chain D, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSR|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|C Chain C, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|D Chain D, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
Length = 184
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 81/147 (55%), Gaps = 12/147 (8%)
Query: 25 QTITVSDLTS-NKKAILFAVPGAFTPTCSQKHLPGFVEKSAEL-KSKGVDIVACISVNDA 82
QT+ S L S NKK I+ P AF+PTC+ H+PG++ EL K K VD V ++V++
Sbjct: 43 QTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNP 102
Query: 83 FVMKAWKENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVR-SRRYALLAENG 139
F +AW ++LG+ D + SD FTK+IG EL + D GV S R+A++ ENG
Sbjct: 103 FANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVGD-----GVYWSGRWAMVVENG 157
Query: 140 VVKVLNLE--EGGAFTFSGAEDMLKAL 164
+V E G T S E +L L
Sbjct: 158 IVTYAAKETNPGTDVTVSSVESVLAHL 184
>pdb|4H86|A Chain A, Crystal Structure Of Ahp1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 199
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 81/147 (55%), Gaps = 12/147 (8%)
Query: 25 QTITVSDLTS-NKKAILFAVPGAFTPTCSQKHLPGFVEKSAEL-KSKGVDIVACISVNDA 82
QT+ S L S NKK I+ P AF+PTC+ H+PG++ EL K K VD V ++V++
Sbjct: 58 QTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNP 117
Query: 83 FVMKAWKENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVR-SRRYALLAENG 139
F +AW ++LG+ D + SD FTK+IG EL + D GV S R+A++ ENG
Sbjct: 118 FANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVGD-----GVYWSGRWAMVVENG 172
Query: 140 VVKVLNLE--EGGAFTFSGAEDMLKAL 164
+V E G T S E +L L
Sbjct: 173 IVTYAAKETNPGTDVTVSSVESVLAHL 199
>pdb|1XIY|A Chain A, Crystal Structure Of Plasmodium Falciparum Antioxidant
Protein (1-Cys Peroxiredoxin)
pdb|1XIY|B Chain B, Crystal Structure Of Plasmodium Falciparum Antioxidant
Protein (1-Cys Peroxiredoxin)
Length = 182
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 20 SAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAE-LKSKGVDIVACIS 78
S + +I +L +NKK +L ++PGAFTPT S K +PG+ E+ +K D + CI+
Sbjct: 28 SPNDFTSIDTHELFNNKKILLISLPGAFTPTXSTKMIPGYEEEYDYFIKENNFDDIYCIT 87
Query: 79 VNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAEN 138
ND +V+K+W +++ I ++ +SDGN FT ++ +D S+ +G+R R+ + EN
Sbjct: 88 NNDIYVLKSWFKSMDIK-KIKYISDGNSSFTDSMNMLVDKSN--FFMGMRPWRFVAIVEN 144
Query: 139 GVV 141
++
Sbjct: 145 NIL 147
>pdb|4DSS|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 176
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 80/147 (54%), Gaps = 12/147 (8%)
Query: 25 QTITVSDLTS-NKKAILFAVPGAFTPTCSQKHLPGFVEKSAEL-KSKGVDIVACISVNDA 82
QT+ S L S NKK I+ P AF+PT + H+PG++ EL K K VD V ++V++
Sbjct: 35 QTVEWSKLISENKKVIITGAPAAFSPTSTVSHIPGYINYLDELVKEKEVDQVIVVTVDNP 94
Query: 83 FVMKAWKENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVR-SRRYALLAENG 139
F +AW ++LG+ D + SD FTK+IG EL + D GV S R+A++ ENG
Sbjct: 95 FANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVGD-----GVYWSGRWAMVVENG 149
Query: 140 VVKVLNLE--EGGAFTFSGAEDMLKAL 164
+V E G T S E +L L
Sbjct: 150 IVTYAAKETNPGTDVTVSSVESVLAHL 176
>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|B Chain B, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|C Chain C, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|D Chain D, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|E Chain E, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|F Chain F, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|G Chain G, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|H Chain H, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|I Chain I, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|J Chain J, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
Length = 249
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 6 VGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAE 65
+G++ P+ ++ +L VS K +LF+ P FTP C+ + + F + +
Sbjct: 7 IGERFPEMEVTTDHGVIKLPDHYVS---QGKWFVLFSHPADFTPVCTTEFV-SFARRYED 62
Query: 66 LKSKGVDIVACISVNDAFVMKAWKE----NLGINDEVLLLSDGNGVFTKAIG 113
+ GVD++ +SV+ F WKE ++G+ +++D G + +G
Sbjct: 63 FQRLGVDLIG-LSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLG 113
>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|B Chain B, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|C Chain C, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|D Chain D, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|E Chain E, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|F Chain F, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|G Chain G, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|H Chain H, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|I Chain I, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|J Chain J, Thioredoxin Peroxidase From Aeropyrum Pernix K1
Length = 249
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 6 VGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAE 65
+G++ P+ ++ +L VS K +LF+ P FTP C+ + + F + +
Sbjct: 7 IGERFPEXEVTTDHGVIKLPDHYVS---QGKWFVLFSHPADFTPVCTTEFV-SFARRYED 62
Query: 66 LKSKGVDIVACISVNDAFVMKAWKE----NLGINDEVLLLSDGNGVFTKAIG 113
+ GVD++ +SV+ F WKE ++G+ +++D G + +G
Sbjct: 63 FQRLGVDLIG-LSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLG 113
>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
Length = 250
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 6 VGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAE 65
+G++ P+ ++ +L VS K +LF+ P FTP C+ + + F + +
Sbjct: 8 IGERFPEMEVTTDHGVIKLPDHYVS---QGKWFVLFSHPADFTPVCTTEFV-SFARRYED 63
Query: 66 LKSKGVDIVACISVNDAFVMKAWKE----NLGINDEVLLLSDGNGVFTKAIG 113
+ GVD++ +SV+ F WKE ++G+ +++D G + +G
Sbjct: 64 FQRLGVDLIG-LSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLG 114
>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|B Chain B, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|C Chain C, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|D Chain D, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|E Chain E, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|F Chain F, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|G Chain G, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|H Chain H, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|I Chain I, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|J Chain J, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
Length = 249
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 6 VGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAE 65
+G++ P+ ++ +L VS K +LF+ P FTP C+ + + F + +
Sbjct: 7 IGERFPEMEVTTDHGVIKLPDHYVS---QGKWFVLFSHPADFTPVCTTEFV-SFARRYED 62
Query: 66 LKSKGVDIVACISVNDAFVMKAWKE----NLGINDEVLLLSDGNGVFTKAIG 113
+ GVD++ +SV+ F WKE ++G+ +++D G + +G
Sbjct: 63 FQRLGVDLIG-LSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLG 113
>pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX3|B Chain B, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX3|C Chain C, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX3|D Chain D, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX4|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|B Chain B, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|C Chain C, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|D Chain D, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|E Chain E, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|F Chain F, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|G Chain G, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|H Chain H, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|4GQF|A Chain A, Aeropyrum Pernix Peroxiredoxin Q Enzyme In The Locally
Unfolded Conformation
pdb|4GQF|B Chain B, Aeropyrum Pernix Peroxiredoxin Q Enzyme In The Locally
Unfolded Conformation
Length = 164
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 13/105 (12%)
Query: 4 ISVGDKLPDATLSYFDSAGELQTITVSD-LTSNKKAILFAVPGAFTPTCSQKHLPGFVEK 62
+ +G+K PD TL D + + + + L + A+L P AF+P C+ K L F +K
Sbjct: 5 VELGEKAPDFTLPNQD----FEPVNLYEVLKRGRPAVLIFFPAAFSPVCT-KELCTFRDK 59
Query: 63 SAELKSKGVDIVACISVNDAFVMKAWKE--NLGINDEVLLLSDGN 105
A+L+ +++A ISV+ + +K +K+ L N LLSD N
Sbjct: 60 XAQLEKANAEVLA-ISVDSPWCLKKFKDENRLAFN----LLSDYN 99
>pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
pdb|4GQC|B Chain B, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
pdb|4GQC|C Chain C, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
pdb|4GQC|D Chain D, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
Length = 164
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 13/105 (12%)
Query: 4 ISVGDKLPDATLSYFDSAGELQTITVSD-LTSNKKAILFAVPGAFTPTCSQKHLPGFVEK 62
+ +G+K PD TL D + + + + L + A+L P AF+P C+ K L F +K
Sbjct: 5 VELGEKAPDFTLPNQD----FEPVNLYEVLKRGRPAVLIFFPAAFSPVCT-KELCTFRDK 59
Query: 63 SAELKSKGVDIVACISVNDAFVMKAWKE--NLGINDEVLLLSDGN 105
A+L+ +++A ISV+ + +K +K+ L N LLSD N
Sbjct: 60 MAQLEKANAEVLA-ISVDSPWCLKKFKDENRLAFN----LLSDYN 99
>pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|B Chain B, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|C Chain C, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|D Chain D, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
Length = 164
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKS 63
+ +G+K P+ L D L+ + + K +L P AFT + S K + F +
Sbjct: 2 VEIGEKAPEIELVDTD----LKKVKIPSDFKGKVVVLAFYPAAFT-SVSTKEMSTFRDSM 56
Query: 64 AELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPM 123
A+ +V ISV+ F KA+KE IN ++SD N KA G +L P+
Sbjct: 57 AKFNEVNA-VVIGISVDPPFSNKAFKEQNKIN--FTIVSDFNREAVKAYGVAGEL---PI 110
Query: 124 --GLGVRSRRYALLAENGVVK 142
G + R ++ +NG+V+
Sbjct: 111 LKGYVLAKRSVFVIDKNGIVR 131
>pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|B Chain B, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|C Chain C, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form
pdb|2V2G|D Chain D, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form
pdb|2V32|A Chain A, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|B Chain B, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|C Chain C, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V32|D Chain D, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form 2
pdb|2V41|A Chain A, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|B Chain B, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|C Chain C, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|D Chain D, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|E Chain E, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|F Chain F, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|G Chain G, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
pdb|2V41|H Chain H, Crystal Structure Of The C45s Mutant Of The
Peroxiredoxin 6 Of Arenicola Marina. Orthorhombic Form
Length = 233
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKS 63
I++G+ P+ F++ + + D N +LF+ P FTP S L ++
Sbjct: 3 ITLGEVFPN-----FEADSTIGKLKFHDWLGNSWGVLFSHPRDFTPV-STTELGRVIQLE 56
Query: 64 AELKSKGVDIVACISVNDAFVMKAWKENL 92
+ K +GV ++A +S ++ K W E++
Sbjct: 57 GDFKKRGVKLIA-LSCDNVADHKEWSEDV 84
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 5 SVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSA 64
S G P+ L D+ G + I +SDL K + G + P C +K P +
Sbjct: 1 SEGSDAPNFVLE--DTNG--KRIELSDLKG--KGVFLNFWGTWCPHC-KKEFPYMANQYK 53
Query: 65 ELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSD 103
KS+GV+IVA + + ++ G+N V+L +D
Sbjct: 54 HFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTD 92
>pdb|2A4V|A Chain A, Crystal Structure Of A Truncated Mutant Of Yeast Nuclear
Thiol Peroxidase
Length = 159
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAV-PGAFTPTCSQKHLPGFVEK 62
+ +GD +PD +L D+ +I++ +T N + ++F V P A TP S + GF +
Sbjct: 7 LEIGDPIPDLSLLNEDN----DSISLKKITENNRVVVFFVYPRASTP-GSTRQASGFRDN 61
Query: 63 SAELKSKGVDIVACISVNDAFVMKAW--KENLGINDEVLLLSDGNGVFTKAIGCELDLSD 120
ELK V +S + K + K+NL + LLSD F +G +
Sbjct: 62 YQELKEYAA--VFGLSADSVTSQKKFQSKQNLPYH----LLSDPKREFIGLLGAK----K 111
Query: 121 KPMGLGVRSR 130
P+ +RS
Sbjct: 112 TPLSGSIRSH 121
>pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From
Sulfolobus Tokodaii
pdb|4G2E|A Chain A, Crystal Structure Of A Dimeric Prxq From Sulfolobus
Tokodaii
Length = 157
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Query: 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKS 63
+ +G+ PD L EL+ + +S L K +L P AFT C+ K + F +
Sbjct: 4 VEIGELAPDFELP----DTELKKVKLSAL-KGKVVVLAFYPAAFTQVCT-KEMCTFRDSM 57
Query: 64 AELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPM 123
A+ +V ISV+ F KA+KE+ +N +LSD N K + P
Sbjct: 58 AKFNQVNA-VVLGISVDPPFSNKAFKEHNKLN--FTILSDYNREVVKKYNVAWEFPALP- 113
Query: 124 GLGVRSRRYALLAENGVVK 142
G + R ++ + G V+
Sbjct: 114 GYVLAKRAVFVIDKEGKVR 132
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 20 SAGELQTITVSD-LTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACIS 78
S G+ Q + ++ L + +LF P A T ++ L FV + + +
Sbjct: 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD----------EMG 196
Query: 79 VNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRS 129
V FV +E L + D VL+L +GN + G ++ +KP L V S
Sbjct: 197 VTSVFVTHDQEEALEVADRVLVLHEGN---VEQFGTPEEVYEKPGTLFVAS 244
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 5 SVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSA 64
S G P+ L D+ G + I +SDL K + G + C +K P +
Sbjct: 1 SEGSDAPNFVLE--DTNG--KRIELSDLKG--KGVFLNFWGTWCEPC-KKQFPYMANQYK 53
Query: 65 ELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSD 103
KS+GV+IVA + + ++ G+N V+L +D
Sbjct: 54 HFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTD 92
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 5 SVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSA 64
S G P+ L D+ G + I +SDL K + G + C +K P +
Sbjct: 1 SEGSDAPNFVLE--DTNG--KRIELSDLKG--KGVFLNFWGTWAEPC-KKEFPYMANQYK 53
Query: 65 ELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSD 103
KS+GV+IVA + + ++ G+N V+L +D
Sbjct: 54 HFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTD 92
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 5 SVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSA 64
S G P+ L D+ G + I +SDL K + G + C +K P +
Sbjct: 1 SEGSDAPNFVLE--DTNG--KRIELSDLKG--KGVFLNFWGTWCEPC-KKEFPYMANQYK 53
Query: 65 ELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSD 103
KS+GV+IVA + + ++ G+N V+L +D
Sbjct: 54 HFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTD 92
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 5 SVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSA 64
S G P+ L D+ G + I +SDL K + G + C +K P +
Sbjct: 1 SEGSDAPNFVLE--DTNG--KRIELSDLKG--KGVFLNFWGTWCEPC-KKEFPYXANQYK 53
Query: 65 ELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSD 103
KS+GV+IVA + + ++ G+N V+L +D
Sbjct: 54 HFKSQGVEIVAVNVGESKIAVHNFXKSYGVNFPVVLDTD 92
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 25 QTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFV 84
+ I +SDL K + G + C +K P + KS+GV+IVA
Sbjct: 14 KRIELSDLKG--KGVFLNFWGTWCEHC-KKEFPYMANQYKHFKSQGVEIVAVNVGESKIA 70
Query: 85 MKAWKENLGINDEVLLLSD 103
+ + ++ G+N V+L +D
Sbjct: 71 VHNFMKSYGVNFPVVLDTD 89
>pdb|1QXH|A Chain A, Crystal Structure Of Escherichia Coli Thiol Peroxidase In
The Oxidized State
pdb|1QXH|B Chain B, Crystal Structure Of Escherichia Coli Thiol Peroxidase In
The Oxidized State
pdb|3HVS|A Chain A, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
pdb|3HVS|B Chain B, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
pdb|3I43|A Chain A, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
pdb|3I43|B Chain B, Escherichia Coli Thiol Peroxidase (Tpx) Wild Type
Disulfide Form
Length = 167
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 4 ISVGDKLPDA---TLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFV 60
++V + +P A ++ A +L +T+ + K+ +L P T C+ + F
Sbjct: 11 VTVANSIPQAGSKAQTFTLVAKDLSDVTLGQF-AGKRKVLNIFPSIDTGVCA-ASVRKFN 68
Query: 61 EKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSD 120
+ + E+ + +V CIS + F + G+N+ + L + N F +A G + ++D
Sbjct: 69 QLATEIDNT---VVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYG--VAIAD 123
Query: 121 KPMGLGVRSRRYALLAEN 138
P+ G+ +R ++ EN
Sbjct: 124 GPLK-GLAARAVVVIDEN 140
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 43 VPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLS 102
VP F +C+ PG + K ++KS+ D+V C V + + +G+++ L+
Sbjct: 60 VPEDFLNSCT----PG-MRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFM 114
Query: 103 DGN 105
GN
Sbjct: 115 KGN 117
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 91 NLGINDEVLLLSDGNGVFTKAIGCELDLSD-KPMGLGVRSRRYALLAENGVVKVLN 145
+L +NDE T++I DL+ KP L V + R L+ ENG+V LN
Sbjct: 222 HLRLNDE-----------TRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALN 266
>pdb|1FAI|H Chain H, Three-Dimensional Structure Of Two Crystal Forms Of Fab
R19.9, From A Monoclonal Anti-Arsonate Antibody
pdb|2F19|H Chain H, Three-Dimensional Structure Of Two Crystal Forms Of Fab
R19.9, From A Monoclonal Anti-Arsonate Antibody
Length = 221
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 12 DATLSYFDSAGELQTITVSDLTSNKKAILFAVPG 45
D + YFDS G+ T+TVS + ++ PG
Sbjct: 105 DLAVYYFDSWGQGTTLTVSSAKTTPPSVYPLAPG 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,805,919
Number of Sequences: 62578
Number of extensions: 189774
Number of successful extensions: 595
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 43
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)