Query 045485
Match_columns 164
No_of_seqs 115 out of 1244
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:34:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 1.7E-36 3.6E-41 215.4 15.6 152 1-164 1-152 (157)
2 PRK10382 alkyl hydroperoxide r 100.0 2.2E-32 4.7E-37 201.7 16.5 147 4-164 2-152 (187)
3 TIGR03137 AhpC peroxiredoxin. 100.0 2E-31 4.2E-36 197.1 16.1 144 5-163 3-151 (187)
4 PTZ00137 2-Cys peroxiredoxin; 100.0 3.4E-31 7.4E-36 203.5 16.1 147 3-164 67-221 (261)
5 cd03013 PRX5_like Peroxiredoxi 100.0 1.1E-30 2.4E-35 187.8 16.6 147 6-162 1-155 (155)
6 cd03018 PRX_AhpE_like Peroxire 100.0 1.2E-30 2.5E-35 185.6 14.7 145 4-163 1-149 (149)
7 PRK13190 putative peroxiredoxi 100.0 1.7E-30 3.7E-35 194.1 16.0 143 3-163 1-149 (202)
8 PRK13191 putative peroxiredoxi 100.0 1.8E-30 3.9E-35 195.5 15.6 145 3-164 6-157 (215)
9 PRK13599 putative peroxiredoxi 100.0 2.9E-30 6.2E-35 194.3 15.8 145 4-164 2-152 (215)
10 PRK00522 tpx lipid hydroperoxi 100.0 4.7E-30 1E-34 186.6 15.7 149 2-164 16-165 (167)
11 PF08534 Redoxin: Redoxin; In 100.0 1.7E-30 3.8E-35 184.4 13.1 146 5-161 1-146 (146)
12 PRK15000 peroxidase; Provision 100.0 7.8E-30 1.7E-34 190.2 16.1 148 4-163 2-157 (200)
13 cd03015 PRX_Typ2cys Peroxiredo 100.0 1.2E-29 2.6E-34 185.3 15.6 141 6-163 1-152 (173)
14 PRK13189 peroxiredoxin; Provis 100.0 1.2E-29 2.5E-34 192.0 15.8 145 3-163 8-158 (222)
15 PRK09437 bcp thioredoxin-depen 100.0 2.3E-29 4.9E-34 180.4 16.0 150 3-164 3-152 (154)
16 cd03014 PRX_Atyp2cys Peroxired 100.0 2.1E-29 4.5E-34 178.3 15.3 140 5-162 1-142 (143)
17 cd03016 PRX_1cys Peroxiredoxin 100.0 1.6E-29 3.5E-34 189.0 15.3 142 6-163 1-149 (203)
18 COG0450 AhpC Peroxiredoxin [Po 100.0 5.7E-29 1.2E-33 180.6 15.7 151 2-163 1-156 (194)
19 PF00578 AhpC-TSA: AhpC/TSA fa 100.0 2.6E-29 5.7E-34 173.2 12.7 124 6-144 1-124 (124)
20 PTZ00253 tryparedoxin peroxida 100.0 6E-29 1.3E-33 185.5 15.4 145 4-163 6-159 (199)
21 cd03017 PRX_BCP Peroxiredoxin 100.0 9.9E-29 2.1E-33 173.9 15.0 140 8-162 1-140 (140)
22 cd02971 PRX_family Peroxiredox 100.0 2E-27 4.2E-32 167.2 15.2 138 9-160 1-139 (140)
23 cd02970 PRX_like2 Peroxiredoxi 100.0 7.3E-28 1.6E-32 170.8 12.1 131 9-147 1-148 (149)
24 cd00340 GSH_Peroxidase Glutath 99.9 2.5E-26 5.4E-31 164.5 9.6 127 10-148 2-142 (152)
25 PLN02412 probable glutathione 99.9 1.1E-25 2.3E-30 163.6 12.0 144 6-162 5-161 (167)
26 PTZ00256 glutathione peroxidas 99.9 1.3E-25 2.8E-30 165.4 11.9 134 6-148 16-167 (183)
27 PTZ00056 glutathione peroxidas 99.9 2.9E-25 6.3E-30 165.5 13.8 133 4-148 13-164 (199)
28 cd03012 TlpA_like_DipZ_like Tl 99.9 1.3E-25 2.8E-30 156.0 10.4 104 27-148 16-125 (126)
29 PLN02399 phospholipid hydroper 99.9 1.7E-25 3.8E-30 169.9 11.8 146 5-163 74-232 (236)
30 cd02969 PRX_like1 Peroxiredoxi 99.9 4.8E-25 1E-29 160.5 12.7 120 7-147 1-128 (171)
31 PRK15412 thiol:disulfide inter 99.9 2.7E-25 6E-30 164.0 10.3 132 4-163 39-174 (185)
32 PRK03147 thiol-disulfide oxido 99.9 1.9E-24 4.2E-29 157.1 13.3 136 3-163 34-170 (173)
33 TIGR02661 MauD methylamine deh 99.9 1.3E-24 2.8E-29 160.9 11.8 131 3-163 45-177 (189)
34 TIGR02540 gpx7 putative glutat 99.9 1.2E-24 2.6E-29 155.9 10.6 132 12-163 4-151 (153)
35 TIGR00385 dsbE periplasmic pro 99.9 1.9E-24 4.1E-29 157.9 10.4 133 4-162 34-168 (173)
36 cd02968 SCO SCO (an acronym fo 99.9 3.5E-23 7.7E-28 145.8 12.2 127 9-146 1-141 (142)
37 KOG0855 Alkyl hydroperoxide re 99.9 7E-23 1.5E-27 144.8 12.9 132 3-147 62-193 (211)
38 cd03010 TlpA_like_DsbE TlpA-li 99.9 3.5E-23 7.7E-28 143.6 10.6 117 9-148 2-120 (127)
39 cd02967 mauD Methylamine utili 99.9 1.9E-22 4.1E-27 137.2 11.5 112 11-145 1-112 (114)
40 KOG0854 Alkyl hydroperoxide re 99.9 2.6E-22 5.7E-27 143.0 11.8 150 3-163 5-163 (224)
41 COG0678 AHP1 Peroxiredoxin [Po 99.9 4.6E-21 1E-25 133.3 16.7 160 2-164 1-165 (165)
42 KOG0852 Alkyl hydroperoxide re 99.9 1.4E-21 3E-26 139.1 13.3 149 2-162 2-155 (196)
43 cd03008 TryX_like_RdCVF Trypar 99.9 5.2E-22 1.1E-26 140.8 9.0 101 27-145 18-129 (146)
44 KOG0541 Alkyl hydroperoxide re 99.9 2.3E-20 5E-25 130.5 14.0 161 2-164 7-171 (171)
45 cd02966 TlpA_like_family TlpA- 99.9 7.5E-21 1.6E-25 127.7 11.2 110 17-146 4-115 (116)
46 PRK14018 trifunctional thiored 99.9 3.8E-21 8.2E-26 160.0 11.7 133 4-162 32-170 (521)
47 TIGR01626 ytfJ_HI0045 conserve 99.9 5.6E-21 1.2E-25 140.0 11.0 125 2-148 21-166 (184)
48 PLN02919 haloacid dehalogenase 99.8 4.7E-21 1E-25 171.5 11.1 136 4-162 391-533 (1057)
49 cd03011 TlpA_like_ScsD_MtbDsbE 99.8 3.4E-20 7.4E-25 127.6 12.4 109 11-147 1-111 (123)
50 COG2077 Tpx Peroxiredoxin [Pos 99.8 8.6E-20 1.9E-24 127.3 11.2 133 3-148 17-150 (158)
51 cd02964 TryX_like_family Trypa 99.8 5.8E-20 1.3E-24 128.5 9.9 107 21-147 5-118 (132)
52 cd03009 TryX_like_TryX_NRX Try 99.8 4.5E-20 9.7E-25 128.7 8.0 111 17-146 3-117 (131)
53 PRK10606 btuE putative glutath 99.8 8.1E-19 1.8E-23 129.0 13.5 128 9-148 4-165 (183)
54 PRK13728 conjugal transfer pro 99.8 3.5E-19 7.6E-24 130.0 8.5 117 4-161 49-167 (181)
55 PF13905 Thioredoxin_8: Thiore 99.7 3.7E-17 8E-22 107.7 7.6 90 35-141 1-95 (95)
56 TIGR02738 TrbB type-F conjugat 99.6 4.2E-15 9.2E-20 106.4 7.1 96 36-163 51-151 (153)
57 PF02630 SCO1-SenC: SCO1/SenC; 99.6 2.5E-14 5.5E-19 104.6 10.5 132 7-147 29-173 (174)
58 cd02950 TxlA TRX-like protein 99.4 8.9E-13 1.9E-17 93.4 5.2 90 34-163 19-108 (142)
59 TIGR02740 TraF-like TraF-like 99.4 1.6E-12 3.5E-17 101.2 7.0 90 27-147 159-249 (271)
60 cd02985 TRX_CDSP32 TRX family, 99.3 1.3E-11 2.9E-16 82.6 8.1 77 34-148 14-90 (103)
61 KOG2501 Thioredoxin, nucleored 99.3 4E-11 8.7E-16 85.1 10.4 111 17-146 17-133 (157)
62 COG0386 BtuE Glutathione perox 99.3 1.6E-10 3.6E-15 81.3 12.5 137 11-163 6-158 (162)
63 COG1999 Uncharacterized protei 99.3 1.1E-10 2.4E-15 87.6 12.3 129 12-148 49-190 (207)
64 PF05988 DUF899: Bacterial pro 99.3 1.7E-10 3.6E-15 85.5 12.2 131 3-148 39-175 (211)
65 cd02951 SoxW SoxW family; SoxW 99.2 1.9E-11 4.1E-16 84.4 3.7 101 34-163 12-117 (125)
66 cd02963 TRX_DnaJ TRX domain, D 99.2 2.2E-10 4.8E-15 77.7 8.3 89 34-164 23-111 (111)
67 cd02999 PDI_a_ERp44_like PDIa 99.1 4.1E-10 8.9E-15 75.0 8.1 76 30-147 14-89 (100)
68 cd02948 TRX_NDPK TRX domain, T 99.1 4.4E-10 9.5E-15 75.0 7.5 87 34-164 16-102 (102)
69 PF13098 Thioredoxin_2: Thiore 99.1 3.3E-11 7.2E-16 81.4 0.6 95 34-147 4-101 (112)
70 cd02956 ybbN ybbN protein fami 99.0 7.8E-10 1.7E-14 72.6 6.6 74 34-147 11-84 (96)
71 PRK09381 trxA thioredoxin; Pro 99.0 1.8E-09 3.9E-14 72.6 6.5 85 35-162 21-105 (109)
72 KOG1651 Glutathione peroxidase 99.0 1.1E-08 2.5E-13 72.8 10.2 138 11-161 15-169 (171)
73 cd02953 DsbDgamma DsbD gamma f 98.9 1.6E-09 3.6E-14 72.2 5.5 79 34-147 10-92 (104)
74 KOG2792 Putative cytochrome C 98.9 6.7E-09 1.4E-13 78.9 8.4 122 12-145 121-258 (280)
75 cd02994 PDI_a_TMX PDIa family, 98.9 5.3E-09 1.2E-13 69.3 6.8 74 32-146 14-87 (101)
76 cd03000 PDI_a_TMX3 PDIa family 98.9 6.7E-09 1.5E-13 69.4 6.8 38 32-71 12-49 (104)
77 PF13911 AhpC-TSA_2: AhpC/TSA 98.9 3.5E-08 7.5E-13 67.2 10.1 86 59-147 2-113 (115)
78 PRK10996 thioredoxin 2; Provis 98.8 1.2E-08 2.5E-13 72.0 6.9 86 35-163 52-137 (139)
79 cd02949 TRX_NTR TRX domain, no 98.8 2.2E-08 4.7E-13 66.1 6.9 73 35-147 13-85 (97)
80 cd02997 PDI_a_PDIR PDIa family 98.8 6E-08 1.3E-12 64.2 8.8 77 34-147 16-93 (104)
81 cd03005 PDI_a_ERp46 PDIa famil 98.8 1.9E-08 4E-13 66.5 6.2 74 35-147 16-91 (102)
82 PTZ00051 thioredoxin; Provisio 98.8 4.6E-08 1E-12 64.3 8.0 73 35-148 18-90 (98)
83 cd03002 PDI_a_MPD1_like PDI fa 98.8 3E-08 6.6E-13 66.3 7.2 69 35-140 18-86 (109)
84 cd02993 PDI_a_APS_reductase PD 98.8 4E-08 8.7E-13 66.2 7.3 77 34-147 20-97 (109)
85 TIGR01126 pdi_dom protein disu 98.7 3.9E-08 8.5E-13 64.7 6.7 74 34-146 12-86 (102)
86 cd03004 PDI_a_ERdj5_C PDIa fam 98.7 6.9E-08 1.5E-12 64.2 7.7 74 35-147 19-92 (104)
87 PF00837 T4_deiodinase: Iodoth 98.7 5.2E-08 1.1E-12 73.7 7.7 136 3-163 72-235 (237)
88 cd02984 TRX_PICOT TRX domain, 98.7 5.6E-08 1.2E-12 63.7 6.9 73 35-147 14-86 (97)
89 cd02954 DIM1 Dim1 family; Dim1 98.7 6.7E-08 1.4E-12 65.8 7.1 74 35-148 14-87 (114)
90 PF00255 GSHPx: Glutathione pe 98.7 8.4E-08 1.8E-12 64.7 7.2 78 17-102 6-91 (108)
91 cd03003 PDI_a_ERdj5_N PDIa fam 98.7 4.7E-08 1E-12 64.8 5.3 43 34-80 17-59 (101)
92 TIGR01068 thioredoxin thioredo 98.6 1.7E-07 3.6E-12 61.4 7.2 85 35-162 14-98 (101)
93 cd02952 TRP14_like Human TRX-r 98.6 1.1E-07 2.4E-12 65.2 6.0 77 34-141 20-103 (119)
94 cd02998 PDI_a_ERp38 PDIa famil 98.6 1.9E-07 4.2E-12 61.7 7.0 75 35-146 18-93 (105)
95 cd02996 PDI_a_ERp44 PDIa famil 98.6 2.6E-07 5.7E-12 61.9 7.7 73 35-142 18-91 (108)
96 TIGR01295 PedC_BrcD bacterioci 98.6 3.8E-07 8.3E-12 62.9 8.4 90 35-161 23-120 (122)
97 cd02962 TMX2 TMX2 family; comp 98.6 1.8E-07 3.8E-12 67.0 6.8 44 35-81 47-90 (152)
98 KOG0907 Thioredoxin [Posttrans 98.6 2.4E-07 5.3E-12 62.3 6.9 74 35-149 21-94 (106)
99 cd02961 PDI_a_family Protein D 98.6 2.4E-07 5.2E-12 60.2 6.5 86 34-163 14-100 (101)
100 cd02955 SSP411 TRX domain, SSP 98.6 4.5E-07 9.8E-12 62.7 7.9 98 34-163 14-117 (124)
101 COG4312 Uncharacterized protei 98.5 1.4E-06 3E-11 64.9 9.8 92 19-117 59-156 (247)
102 PLN00410 U5 snRNP protein, DIM 98.5 5.1E-07 1.1E-11 63.7 7.3 74 34-147 22-97 (142)
103 PHA02278 thioredoxin-like prot 98.5 7.3E-07 1.6E-11 59.7 7.1 78 34-147 13-90 (103)
104 cd02947 TRX_family TRX family; 98.4 1.5E-06 3.3E-11 55.3 7.8 72 35-147 10-81 (93)
105 PF13728 TraF: F plasmid trans 98.4 1.6E-06 3.5E-11 65.4 8.9 89 28-147 114-203 (215)
106 cd02959 ERp19 Endoplasmic reti 98.4 1.9E-07 4.1E-12 63.9 3.5 84 27-147 12-95 (117)
107 PRK00293 dipZ thiol:disulfide 98.4 4.7E-07 1E-11 77.4 6.5 91 34-163 473-568 (571)
108 cd03065 PDI_b_Calsequestrin_N 98.4 1.5E-06 3.2E-11 59.8 7.4 87 35-163 26-117 (120)
109 cd02957 Phd_like Phosducin (Ph 98.4 1.6E-06 3.4E-11 58.8 7.3 71 36-148 25-95 (113)
110 PTZ00443 Thioredoxin domain-co 98.4 8.4E-07 1.8E-11 67.3 6.1 72 35-146 52-123 (224)
111 cd03001 PDI_a_P5 PDIa family, 98.3 2.8E-06 6.2E-11 56.0 7.3 38 35-75 18-55 (103)
112 PF00085 Thioredoxin: Thioredo 98.3 2.1E-06 4.6E-11 56.4 6.0 85 35-162 17-101 (103)
113 cd02975 PfPDO_like_N Pyrococcu 98.3 4.3E-06 9.4E-11 56.8 7.4 39 38-80 24-62 (113)
114 PRK13703 conjugal pilus assemb 98.3 3.9E-06 8.4E-11 64.5 7.8 89 28-147 137-226 (248)
115 cd02989 Phd_like_TxnDC9 Phosdu 98.3 5.9E-06 1.3E-10 56.1 7.8 73 34-147 21-93 (113)
116 PTZ00102 disulphide isomerase; 98.3 2.3E-06 5.1E-11 71.3 7.0 77 34-147 374-450 (477)
117 cd02986 DLP Dim1 family, Dim1- 98.3 1.4E-06 3.1E-11 59.1 4.4 44 34-81 13-56 (114)
118 TIGR02739 TraF type-F conjugat 98.2 5.7E-06 1.2E-10 63.9 7.8 90 27-147 143-233 (256)
119 cd02987 Phd_like_Phd Phosducin 98.2 6.1E-06 1.3E-10 60.4 7.2 84 37-162 85-172 (175)
120 KOG0910 Thioredoxin-like prote 98.2 4.7E-06 1E-10 58.9 6.2 73 35-147 61-133 (150)
121 cd03006 PDI_a_EFP1_N PDIa fami 98.2 2.3E-06 5E-11 58.2 4.4 43 34-80 28-70 (113)
122 PF09695 YtfJ_HI0045: Bacteria 98.2 2.1E-05 4.5E-10 56.1 9.3 138 4-163 1-156 (160)
123 KOG4498 Uncharacterized conser 98.2 1.8E-05 3.9E-10 57.7 8.4 138 19-163 36-193 (197)
124 cd02992 PDI_a_QSOX PDIa family 98.1 5E-06 1.1E-10 56.5 5.2 32 35-68 19-50 (114)
125 cd02995 PDI_a_PDI_a'_C PDIa fa 98.1 8.1E-06 1.8E-10 53.7 5.2 32 35-68 18-49 (104)
126 TIGR00411 redox_disulf_1 small 98.1 1.4E-05 3E-10 50.5 6.1 34 39-75 3-36 (82)
127 cd02988 Phd_like_VIAF Phosduci 98.1 1.3E-05 2.9E-10 59.4 6.7 83 36-162 103-189 (192)
128 cd02965 HyaE HyaE family; HyaE 98.1 3.1E-05 6.8E-10 52.4 7.7 75 34-148 26-102 (111)
129 PF04592 SelP_N: Selenoprotein 98.0 4.2E-05 9.2E-10 57.8 8.2 128 8-162 8-143 (238)
130 COG0526 TrxA Thiol-disulfide i 98.0 7.2E-06 1.6E-10 53.8 3.5 48 27-79 25-72 (127)
131 PTZ00102 disulphide isomerase; 97.9 3.2E-05 7E-10 64.5 7.2 35 34-70 48-82 (477)
132 TIGR00424 APS_reduc 5'-adenyly 97.9 1.5E-05 3.2E-10 66.4 4.9 44 35-81 371-414 (463)
133 TIGR01130 ER_PDI_fam protein d 97.9 4.6E-05 1E-09 63.0 7.2 40 34-75 17-58 (462)
134 cd01659 TRX_superfamily Thiore 97.8 0.0001 2.2E-09 42.8 6.1 44 40-88 2-45 (69)
135 TIGR02187 GlrX_arch Glutaredox 97.8 0.00013 2.7E-09 55.0 7.4 75 34-147 18-96 (215)
136 cd02958 UAS UAS family; UAS is 97.8 0.00016 3.6E-09 48.8 7.2 77 34-147 16-96 (114)
137 PLN02309 5'-adenylylsulfate re 97.7 5.4E-05 1.2E-09 63.1 5.2 43 35-80 365-407 (457)
138 PF05176 ATP-synt_10: ATP10 pr 97.7 0.00012 2.5E-09 56.6 6.4 134 9-161 100-249 (252)
139 cd02960 AGR Anterior Gradient 97.7 6E-05 1.3E-09 52.5 4.1 20 34-54 22-41 (130)
140 PF13899 Thioredoxin_7: Thiore 97.6 0.00017 3.7E-09 45.9 5.5 65 34-104 16-82 (82)
141 PTZ00062 glutaredoxin; Provisi 97.6 0.00018 3.9E-09 53.9 6.3 38 36-78 18-55 (204)
142 COG3118 Thioredoxin domain-con 97.5 0.00021 4.6E-09 55.9 5.4 42 35-80 43-84 (304)
143 TIGR00412 redox_disulf_2 small 97.4 0.00033 7.2E-09 44.0 4.2 26 40-67 3-28 (76)
144 smart00594 UAS UAS domain. 97.3 0.0022 4.7E-08 44.0 8.0 20 34-54 26-45 (122)
145 PF14595 Thioredoxin_9: Thiore 97.3 0.00013 2.9E-09 50.7 1.8 75 35-147 41-116 (129)
146 KOG0190 Protein disulfide isom 97.2 0.0011 2.3E-08 55.6 6.9 58 34-95 40-98 (493)
147 cd02973 TRX_GRX_like Thioredox 97.2 0.00057 1.2E-08 41.5 3.9 33 39-75 3-35 (67)
148 TIGR02196 GlrX_YruB Glutaredox 97.1 0.0021 4.6E-08 39.0 5.8 46 41-95 3-49 (74)
149 cd02982 PDI_b'_family Protein 97.0 0.001 2.2E-08 43.6 3.9 38 35-75 12-49 (103)
150 TIGR01130 ER_PDI_fam protein d 96.9 0.0011 2.4E-08 54.8 3.8 39 35-75 364-404 (462)
151 PHA02125 thioredoxin-like prot 96.8 0.0025 5.4E-08 39.8 4.0 20 39-60 2-21 (75)
152 cd03026 AhpF_NTD_C TRX-GRX-lik 96.6 0.0051 1.1E-07 39.9 4.7 35 29-66 7-41 (89)
153 KOG0908 Thioredoxin-like prote 96.5 0.0019 4.2E-08 49.4 2.6 38 34-75 20-57 (288)
154 TIGR02187 GlrX_arch Glutaredox 96.4 0.0088 1.9E-07 45.0 5.7 28 35-63 132-159 (215)
155 cd03007 PDI_a_ERp29_N PDIa fam 96.4 0.017 3.7E-07 39.4 6.5 38 29-70 11-49 (116)
156 TIGR02200 GlrX_actino Glutared 96.1 0.013 2.9E-07 36.0 4.3 40 40-89 3-42 (77)
157 KOG0191 Thioredoxin/protein di 96.0 0.014 3E-07 47.7 5.4 61 35-103 47-107 (383)
158 PF13778 DUF4174: Domain of un 95.9 0.011 2.5E-07 40.3 3.6 95 29-147 3-97 (118)
159 PRK10877 protein disulfide iso 95.9 0.017 3.6E-07 44.2 4.8 35 35-75 107-141 (232)
160 PRK11657 dsbG disulfide isomer 95.7 0.03 6.6E-07 43.3 5.8 27 35-63 117-143 (251)
161 KOG0190 Protein disulfide isom 95.6 0.014 3E-07 49.1 3.7 34 34-69 383-416 (493)
162 KOG3425 Uncharacterized conser 95.5 0.021 4.5E-07 39.0 3.5 51 28-81 18-75 (128)
163 TIGR02180 GRX_euk Glutaredoxin 95.2 0.027 5.8E-07 35.3 3.4 49 40-94 2-52 (84)
164 PF06110 DUF953: Eukaryotic pr 95.1 0.014 3.1E-07 40.0 2.0 45 34-81 18-68 (119)
165 COG4232 Thiol:disulfide interc 95.0 0.039 8.5E-07 47.1 4.5 36 35-71 474-509 (569)
166 cd02976 NrdH NrdH-redoxin (Nrd 94.7 0.13 2.8E-06 30.8 5.3 52 42-103 4-56 (73)
167 PF03190 Thioredox_DsbH: Prote 94.5 0.14 3E-06 37.0 5.9 105 27-162 30-138 (163)
168 TIGR02190 GlrX-dom Glutaredoxi 94.5 0.1 2.2E-06 32.7 4.6 49 45-103 15-63 (79)
169 PRK11200 grxA glutaredoxin 1; 94.3 0.12 2.5E-06 32.8 4.6 34 43-80 6-39 (85)
170 PF08235 LNS2: LNS2 (Lipin/Ned 93.7 0.15 3.3E-06 36.6 4.6 72 18-104 4-83 (157)
171 KOG0912 Thiol-disulfide isomer 93.3 0.13 2.9E-06 40.7 4.1 55 36-95 14-71 (375)
172 PRK10329 glutaredoxin-like pro 93.3 0.24 5.1E-06 31.4 4.6 52 43-104 6-57 (81)
173 TIGR02194 GlrX_NrdH Glutaredox 93.2 0.2 4.4E-06 30.6 4.2 52 42-103 3-54 (72)
174 cd03020 DsbA_DsbC_DsbG DsbA fa 93.2 0.21 4.5E-06 36.9 5.0 25 35-61 77-101 (197)
175 cd03418 GRX_GRXb_1_3_like Glut 92.9 0.38 8.2E-06 29.3 5.1 52 42-102 4-56 (75)
176 cd02991 UAS_ETEA UAS family, E 92.6 0.27 5.9E-06 33.4 4.5 18 34-52 16-37 (116)
177 TIGR02183 GRXA Glutaredoxin, G 92.4 0.28 6E-06 31.3 4.1 47 43-93 5-52 (86)
178 COG3054 Predicted transcriptio 92.3 0.28 6.1E-06 35.0 4.2 51 98-162 127-177 (184)
179 KOG0191 Thioredoxin/protein di 92.2 0.33 7.1E-06 39.7 5.2 56 37-95 164-220 (383)
180 KOG1731 FAD-dependent sulfhydr 92.0 0.12 2.5E-06 44.2 2.4 61 37-101 59-120 (606)
181 cd02066 GRX_family Glutaredoxi 92.0 0.49 1.1E-05 28.0 4.7 49 45-103 7-56 (72)
182 TIGR02181 GRX_bact Glutaredoxi 92.0 0.42 9E-06 29.6 4.5 51 42-102 3-54 (79)
183 cd03029 GRX_hybridPRX5 Glutare 91.9 0.34 7.4E-06 29.5 3.9 28 45-81 8-35 (72)
184 PHA03050 glutaredoxin; Provisi 91.6 0.33 7.2E-06 32.6 3.9 19 34-54 11-29 (108)
185 TIGR00365 monothiol glutaredox 91.5 1.2 2.6E-05 29.2 6.4 59 34-102 10-72 (97)
186 PF00462 Glutaredoxin: Glutare 91.2 0.19 4.1E-06 29.5 2.2 50 43-102 4-54 (60)
187 PF07976 Phe_hydrox_dim: Pheno 91.2 0.3 6.5E-06 35.5 3.6 109 2-116 28-166 (169)
188 COG0695 GrxC Glutaredoxin and 91.0 0.5 1.1E-05 29.8 4.1 52 45-105 8-61 (80)
189 cd03419 GRX_GRXh_1_2_like Glut 90.8 0.47 1E-05 29.3 3.9 54 42-103 4-59 (82)
190 cd03023 DsbA_Com1_like DsbA fa 90.4 0.21 4.5E-06 34.6 2.1 30 35-66 5-34 (154)
191 TIGR02189 GlrX-like_plant Glut 89.9 0.46 1E-05 31.2 3.4 19 34-54 6-24 (99)
192 PRK10638 glutaredoxin 3; Provi 89.8 1.3 2.9E-05 27.7 5.4 50 43-102 7-57 (83)
193 cd03027 GRX_DEP Glutaredoxin ( 89.6 1.6 3.6E-05 26.5 5.6 48 45-102 8-56 (73)
194 cd03032 ArsC_Spx Arsenate Redu 89.2 0.47 1E-05 32.0 3.0 64 41-115 3-70 (115)
195 PRK11509 hydrogenase-1 operon 89.0 3.6 7.9E-05 28.7 7.4 32 103-147 78-109 (132)
196 COG2143 Thioredoxin-related pr 87.9 0.71 1.5E-05 33.2 3.3 31 105-147 104-134 (182)
197 COG2179 Predicted hydrolase of 87.2 1.7 3.6E-05 31.6 4.9 60 53-115 45-109 (175)
198 TIGR03765 ICE_PFL_4695 integra 86.4 6.1 0.00013 26.4 6.9 56 56-115 37-92 (105)
199 PRK01655 spxA transcriptional 86.3 0.13 2.9E-06 35.7 -1.1 66 40-116 2-71 (131)
200 TIGR01617 arsC_related transcr 86.2 0.91 2E-05 30.7 3.0 62 42-114 3-68 (117)
201 TIGR00995 3a0901s06TIC22 chlor 86.0 3.2 6.9E-05 32.5 6.3 91 8-115 80-170 (270)
202 cd03036 ArsC_like Arsenate Red 85.7 0.13 2.9E-06 34.6 -1.3 64 42-115 3-69 (111)
203 PRK12559 transcriptional regul 85.2 1 2.2E-05 31.3 2.9 65 41-115 3-70 (131)
204 PRK06183 mhpA 3-(3-hydroxyphen 84.7 8.6 0.00019 32.8 9.0 106 4-145 411-516 (538)
205 PF11072 DUF2859: Protein of u 84.7 9.6 0.00021 26.9 7.6 56 56-115 75-130 (142)
206 cd02979 PHOX_C FAD-dependent P 84.5 13 0.00028 26.8 8.9 120 7-146 1-153 (167)
207 cd02977 ArsC_family Arsenate R 84.4 0.16 3.6E-06 33.6 -1.3 64 42-115 3-69 (105)
208 PRK08132 FAD-dependent oxidore 83.3 8.8 0.00019 32.8 8.4 105 4-147 427-531 (547)
209 KOG2116 Protein involved in pl 83.2 4.2 9.2E-05 35.7 6.3 114 19-146 536-690 (738)
210 cd03019 DsbA_DsbA DsbA family, 83.1 1.8 3.8E-05 30.8 3.6 37 34-73 14-50 (178)
211 PRK10824 glutaredoxin-4; Provi 82.9 5.2 0.00011 27.2 5.5 20 34-54 13-36 (115)
212 PF13462 Thioredoxin_4: Thiore 82.0 1 2.2E-05 31.6 1.9 46 27-75 5-51 (162)
213 PRK13344 spxA transcriptional 80.0 2.6 5.6E-05 29.3 3.4 64 41-115 3-70 (132)
214 KOG0914 Thioredoxin-like prote 79.1 1.7 3.6E-05 33.1 2.3 35 36-72 145-179 (265)
215 TIGR00412 redox_disulf_2 small 78.4 13 0.00028 22.8 7.3 42 84-142 19-60 (76)
216 PRK06184 hypothetical protein; 77.5 17 0.00038 30.6 8.3 93 4-145 386-479 (502)
217 KOG0911 Glutaredoxin-related p 76.5 3.5 7.7E-05 31.3 3.4 57 34-95 16-72 (227)
218 PF02114 Phosducin: Phosducin; 76.4 3.8 8.3E-05 32.0 3.7 37 36-76 147-183 (265)
219 cd03028 GRX_PICOT_like Glutare 75.8 18 0.00038 23.0 6.9 51 34-94 6-61 (90)
220 TIGR03759 conj_TIGR03759 integ 74.7 4 8.6E-05 30.5 3.2 71 38-115 111-185 (200)
221 PRK08294 phenol 2-monooxygenas 74.6 14 0.00031 32.4 7.1 125 3-146 462-616 (634)
222 PF11009 DUF2847: Protein of u 74.2 1.8 3.9E-05 29.0 1.2 78 35-147 19-96 (105)
223 PRK10954 periplasmic protein d 73.8 4.6 0.0001 30.0 3.5 39 34-75 36-77 (207)
224 PF13192 Thioredoxin_3: Thiore 73.1 6.9 0.00015 24.0 3.7 21 45-66 7-27 (76)
225 cd02972 DsbA_family DsbA famil 72.7 2.5 5.3E-05 26.3 1.6 32 41-75 3-34 (98)
226 cd03060 GST_N_Omega_like GST_N 72.4 4.8 0.0001 24.1 2.8 49 45-105 6-56 (71)
227 KOG4277 Uncharacterized conser 72.2 3.1 6.8E-05 33.2 2.3 35 36-72 44-78 (468)
228 COG1419 FlhF Flagellar GTP-bin 71.8 18 0.00038 30.1 6.6 71 56-141 217-293 (407)
229 cd02983 P5_C P5 family, C-term 71.0 12 0.00027 25.7 4.9 42 107-161 70-111 (130)
230 TIGR03143 AhpF_homolog putativ 70.3 9.3 0.0002 32.9 5.0 28 36-64 476-503 (555)
231 cd03035 ArsC_Yffb Arsenate Red 69.5 8 0.00017 25.6 3.5 63 41-115 2-67 (105)
232 PF06053 DUF929: Domain of unk 67.6 7.1 0.00015 30.3 3.3 30 35-66 58-87 (249)
233 PTZ00062 glutaredoxin; Provisi 66.0 41 0.00089 25.2 7.1 52 34-94 111-166 (204)
234 PF05768 DUF836: Glutaredoxin- 65.8 2.1 4.5E-05 26.9 0.1 56 40-105 2-57 (81)
235 PRK15126 thiamin pyrimidine py 65.4 48 0.0011 25.3 7.7 43 57-102 22-64 (272)
236 TIGR00099 Cof-subfamily Cof su 64.4 42 0.00091 25.4 7.1 42 58-102 20-61 (256)
237 PRK12759 bifunctional gluaredo 63.9 8.9 0.00019 31.8 3.5 36 45-89 9-44 (410)
238 cd03041 GST_N_2GST_N GST_N fam 62.8 32 0.00069 20.9 5.4 52 43-104 5-57 (77)
239 PRK05778 2-oxoglutarate ferred 62.8 12 0.00027 29.7 4.0 27 43-71 16-42 (301)
240 PF00875 DNA_photolyase: DNA p 62.4 31 0.00067 24.4 5.7 38 57-95 53-90 (165)
241 TIGR01662 HAD-SF-IIIA HAD-supe 62.2 39 0.00084 22.6 6.0 39 56-95 27-73 (132)
242 TIGR01672 AphA HAD superfamily 60.8 18 0.00039 27.7 4.4 58 45-103 103-166 (237)
243 cd00570 GST_N_family Glutathio 60.7 6 0.00013 22.6 1.5 10 45-54 6-15 (71)
244 COG3769 Predicted hydrolase (H 59.7 20 0.00043 27.6 4.3 43 61-105 30-72 (274)
245 COG3529 Predicted nucleic-acid 57.9 11 0.00024 22.5 2.1 33 42-80 7-39 (66)
246 KOG0913 Thiol-disulfide isomer 57.7 1.5 3.4E-05 33.5 -1.8 40 31-73 36-75 (248)
247 cd01427 HAD_like Haloacid deha 57.6 30 0.00065 22.4 4.7 38 56-94 26-63 (139)
248 PRK11869 2-oxoacid ferredoxin 56.8 12 0.00027 29.4 3.0 26 43-70 6-31 (280)
249 cd08356 Glo_EDI_BRP_like_17 Th 56.2 42 0.00091 21.8 5.2 51 73-144 58-111 (113)
250 PF00702 Hydrolase: haloacid d 56.0 24 0.00052 25.5 4.3 58 56-115 129-194 (215)
251 KOG1752 Glutaredoxin and relat 54.5 7.1 0.00015 26.0 1.1 48 34-92 12-62 (104)
252 TIGR01485 SPP_plant-cyano sucr 54.1 27 0.00058 26.5 4.5 39 56-95 23-61 (249)
253 TIGR03830 CxxCG_CxxCG_HTH puta 53.9 13 0.00028 25.0 2.4 69 34-116 21-92 (127)
254 smart00775 LNS2 LNS2 domain. T 53.1 15 0.00033 26.1 2.7 18 126-143 139-156 (157)
255 COG0546 Gph Predicted phosphat 52.2 53 0.0011 24.4 5.7 46 56-102 91-136 (220)
256 PF13419 HAD_2: Haloacid dehal 52.1 28 0.00061 23.9 4.1 39 56-95 79-117 (176)
257 PF02966 DIM1: Mitosis protein 52.1 24 0.00051 24.7 3.4 60 34-100 19-78 (133)
258 cd03051 GST_N_GTT2_like GST_N 51.8 16 0.00036 21.4 2.4 12 43-54 4-15 (74)
259 KOG2603 Oligosaccharyltransfer 51.7 94 0.002 25.1 7.1 95 36-162 60-160 (331)
260 PHA03398 viral phosphatase sup 50.9 50 0.0011 26.4 5.5 48 57-105 151-198 (303)
261 TIGR02460 osmo_MPGsynth mannos 50.7 57 0.0012 26.7 5.8 76 50-143 57-142 (381)
262 TIGR03590 PseG pseudaminic aci 50.6 84 0.0018 24.4 6.8 31 64-95 47-82 (279)
263 PHA03075 glutaredoxin-like pro 50.5 5.8 0.00013 27.0 0.2 30 36-67 2-31 (123)
264 PF12681 Glyoxalase_2: Glyoxal 49.9 49 0.0011 20.8 4.7 49 73-144 59-107 (108)
265 TIGR01449 PGP_bact 2-phosphogl 49.9 51 0.0011 23.9 5.3 42 56-98 87-128 (213)
266 cd03059 GST_N_SspA GST_N famil 49.7 7.7 0.00017 23.1 0.7 12 43-54 4-15 (73)
267 PRK14503 mannosyl-3-phosphogly 49.5 60 0.0013 26.7 5.8 76 50-143 58-143 (393)
268 cd03025 DsbA_FrnE_like DsbA fa 49.4 21 0.00046 25.6 3.1 32 40-73 3-34 (193)
269 cd01460 vWA_midasin VWA_Midasi 49.3 51 0.0011 25.8 5.3 21 60-81 184-204 (266)
270 TIGR02177 PorB_KorB 2-oxoacid: 49.3 18 0.00038 28.7 2.8 23 46-70 2-24 (287)
271 PRK15317 alkyl hydroperoxide r 49.2 32 0.0007 29.3 4.6 52 36-94 116-167 (517)
272 PRK13288 pyrophosphatase PpaX; 49.0 74 0.0016 23.2 6.0 45 56-101 84-128 (214)
273 KOG4614 Inner membrane protein 48.9 11 0.00024 29.0 1.5 28 131-161 250-277 (287)
274 PF06491 Disulph_isomer: Disul 48.6 65 0.0014 22.5 5.1 91 60-162 25-126 (136)
275 KOG3414 Component of the U4/U6 48.1 48 0.001 23.1 4.4 54 35-95 23-76 (142)
276 TIGR01684 viral_ppase viral ph 47.1 81 0.0017 25.2 6.1 45 57-102 149-193 (301)
277 cd05017 SIS_PGI_PMI_1 The memb 47.0 82 0.0018 20.9 5.5 37 56-95 56-92 (119)
278 PF01106 NifU: NifU-like domai 46.9 47 0.001 20.1 3.9 41 21-67 15-56 (68)
279 cd00861 ProRS_anticodon_short 46.6 64 0.0014 20.0 4.8 47 56-104 17-63 (94)
280 TIGR03140 AhpF alkyl hydropero 46.6 41 0.0009 28.6 4.8 29 36-65 117-145 (515)
281 COG1651 DsbG Protein-disulfide 46.5 30 0.00064 26.1 3.6 37 27-66 77-113 (244)
282 TIGR03143 AhpF_homolog putativ 46.5 78 0.0017 27.3 6.5 30 105-146 408-440 (555)
283 PF13344 Hydrolase_6: Haloacid 46.5 76 0.0016 20.6 5.2 39 56-95 16-57 (101)
284 TIGR01428 HAD_type_II 2-haloal 46.3 60 0.0013 23.4 5.1 39 56-95 94-132 (198)
285 COG1331 Highly conserved prote 46.2 72 0.0016 28.4 6.2 37 126-164 108-146 (667)
286 PF09488 Osmo_MPGsynth: Mannos 45.7 17 0.00036 29.8 2.2 62 50-115 57-128 (381)
287 TIGR01675 plant-AP plant acid 45.4 62 0.0013 24.8 5.1 40 55-95 121-163 (229)
288 PF08821 CGGC: CGGC domain; I 44.3 89 0.0019 20.8 5.2 60 28-95 29-101 (107)
289 PF04244 DPRP: Deoxyribodipyri 44.1 1.1E+02 0.0023 23.3 6.3 46 56-104 48-100 (224)
290 PF00989 PAS: PAS fold; Inter 44.0 27 0.00059 21.9 2.7 16 131-146 13-28 (113)
291 TIGR01689 EcbF-BcbF capsule bi 43.6 70 0.0015 22.0 4.8 39 56-95 26-79 (126)
292 PRK13225 phosphoglycolate phos 43.6 93 0.002 24.2 6.0 45 56-101 144-188 (273)
293 COG0552 FtsY Signal recognitio 43.3 93 0.002 25.3 6.0 55 35-95 137-196 (340)
294 PF03544 TonB_C: Gram-negative 43.0 23 0.00051 21.3 2.2 17 132-148 21-37 (79)
295 PRK13222 phosphoglycolate phos 43.0 89 0.0019 22.8 5.7 45 56-101 95-139 (226)
296 PRK10026 arsenate reductase; P 42.6 22 0.00047 25.1 2.1 65 41-115 5-72 (141)
297 TIGR02886 spore_II_AA anti-sig 42.5 87 0.0019 20.0 5.0 55 46-103 47-101 (106)
298 PF12710 HAD: haloacid dehalog 42.2 50 0.0011 23.4 4.1 34 61-95 96-129 (192)
299 PLN02770 haloacid dehalogenase 42.2 79 0.0017 24.0 5.4 42 56-98 110-151 (248)
300 COG0560 SerB Phosphoserine pho 41.9 67 0.0015 24.0 4.9 39 56-95 79-117 (212)
301 cd03769 SR_IS607_transposase_l 41.6 83 0.0018 21.6 5.0 50 52-104 45-99 (134)
302 cd07238 Glo_EDI_BRP_like_5 Thi 41.5 91 0.002 19.8 5.0 51 72-145 59-109 (112)
303 PF08448 PAS_4: PAS fold; Int 41.3 32 0.0007 21.4 2.7 17 131-147 7-23 (110)
304 TIGR01488 HAD-SF-IB Haloacid D 41.2 71 0.0015 22.3 4.8 35 59-94 78-112 (177)
305 PRK12702 mannosyl-3-phosphogly 41.1 95 0.0021 24.9 5.7 43 60-105 24-66 (302)
306 cd00860 ThrRS_anticodon ThrRS 40.6 86 0.0019 19.2 6.3 48 56-105 14-61 (91)
307 cd03045 GST_N_Delta_Epsilon GS 39.9 12 0.00027 22.2 0.5 9 45-53 6-14 (74)
308 PRK10811 rne ribonuclease E; R 39.8 74 0.0016 29.8 5.4 101 48-149 203-307 (1068)
309 PRK11866 2-oxoacid ferredoxin 39.8 34 0.00074 27.0 3.1 24 44-69 6-29 (279)
310 TIGR02253 CTE7 HAD superfamily 39.8 70 0.0015 23.3 4.7 42 56-98 96-137 (221)
311 COG1636 Uncharacterized protei 39.8 73 0.0016 23.8 4.5 42 46-95 10-62 (204)
312 TIGR00338 serB phosphoserine p 39.3 75 0.0016 23.2 4.8 39 56-95 87-125 (219)
313 cd00738 HGTP_anticodon HGTP an 39.1 92 0.002 19.1 5.2 47 56-104 17-63 (94)
314 PRK13226 phosphoglycolate phos 39.1 1E+02 0.0022 23.0 5.5 59 56-115 97-167 (229)
315 TIGR03351 PhnX-like phosphonat 38.7 84 0.0018 23.0 5.0 39 56-95 89-127 (220)
316 cd03034 ArsC_ArsC Arsenate Red 38.6 19 0.00041 24.0 1.3 64 42-115 3-69 (112)
317 TIGR01454 AHBA_synth_RP 3-amin 38.3 1.1E+02 0.0024 22.1 5.6 43 56-99 77-119 (205)
318 PF03129 HGTP_anticodon: Antic 38.2 99 0.0022 19.2 5.2 48 56-105 15-62 (94)
319 PF08497 Radical_SAM_N: Radica 38.2 1.3E+02 0.0027 24.1 5.9 41 71-114 17-68 (302)
320 PF13426 PAS_9: PAS domain; PD 38.0 39 0.00085 20.6 2.7 17 131-147 3-19 (104)
321 cd08357 Glo_EDI_BRP_like_18 Th 37.9 94 0.002 20.0 4.7 51 77-145 73-123 (125)
322 PRK10826 2-deoxyglucose-6-phos 37.7 88 0.0019 23.0 5.0 40 56-96 94-133 (222)
323 TIGR01491 HAD-SF-IB-PSPlk HAD- 37.4 1.2E+02 0.0026 21.6 5.5 39 56-95 82-120 (201)
324 PLN03243 haloacid dehalogenase 37.3 88 0.0019 24.1 5.0 42 56-98 111-152 (260)
325 PF01740 STAS: STAS domain; I 36.7 52 0.0011 21.5 3.3 54 36-95 49-102 (117)
326 TIGR01490 HAD-SF-IB-hyp1 HAD-s 36.6 1.1E+02 0.0024 22.0 5.3 39 56-95 89-127 (202)
327 cd01026 TOPRIM_OLD TOPRIM_OLD: 36.1 1.1E+02 0.0024 19.4 4.7 40 66-108 29-68 (97)
328 COG1393 ArsC Arsenate reductas 35.8 8.4 0.00018 26.2 -0.8 66 40-115 3-71 (117)
329 PRK11867 2-oxoglutarate ferred 35.7 40 0.00087 26.6 2.9 22 46-69 18-39 (286)
330 cd08359 Glo_EDI_BRP_like_22 Th 35.5 1.2E+02 0.0026 19.3 6.3 49 73-144 69-117 (119)
331 cd00858 GlyRS_anticodon GlyRS 35.3 1.4E+02 0.0029 19.9 6.9 47 56-105 41-87 (121)
332 PF01323 DSBA: DSBA-like thior 35.3 36 0.00077 24.3 2.4 32 41-75 3-34 (193)
333 TIGR02461 osmo_MPG_phos mannos 35.1 1.5E+02 0.0032 22.3 5.8 36 59-95 20-55 (225)
334 TIGR01482 SPP-subfamily Sucros 35.0 1.5E+02 0.0032 21.6 5.8 36 59-95 20-55 (225)
335 TIGR01489 DKMTPPase-SF 2,3-dik 34.7 1.5E+02 0.0033 20.7 5.7 38 57-95 75-112 (188)
336 PLN02954 phosphoserine phospha 34.7 1E+02 0.0022 22.6 4.8 39 56-95 86-124 (224)
337 PF13894 zf-C2H2_4: C2H2-type 34.7 30 0.00066 15.2 1.4 18 48-66 3-20 (24)
338 TIGR01459 HAD-SF-IIA-hyp4 HAD- 34.7 1.5E+02 0.0033 22.3 5.9 47 56-103 26-75 (242)
339 PF12689 Acid_PPase: Acid Phos 34.4 1.2E+02 0.0026 22.0 5.0 37 58-95 49-86 (169)
340 PF02677 DUF208: Uncharacteriz 34.4 1.3E+02 0.0029 22.0 5.2 42 46-95 5-57 (176)
341 COG0561 Cof Predicted hydrolas 34.1 1.2E+02 0.0026 22.9 5.3 46 56-104 22-67 (264)
342 PF00448 SRP54: SRP54-type pro 33.2 74 0.0016 23.4 3.9 44 56-102 15-63 (196)
343 PRK04596 minC septum formation 32.9 2.1E+02 0.0046 22.2 6.3 58 31-95 46-103 (248)
344 TIGR02765 crypto_DASH cryptoch 32.7 1.6E+02 0.0036 24.3 6.2 38 57-95 61-98 (429)
345 TIGR02463 MPGP_rel mannosyl-3- 32.5 1.5E+02 0.0033 21.6 5.6 36 59-95 21-56 (221)
346 PF12261 T_hemolysin: Thermost 32.5 2E+02 0.0044 21.1 6.0 64 58-136 104-171 (179)
347 COG4545 Glutaredoxin-related p 32.0 28 0.0006 21.9 1.1 43 41-92 6-48 (85)
348 PF03193 DUF258: Protein of un 32.0 1.2E+02 0.0027 21.8 4.7 43 60-105 2-44 (161)
349 PRK11509 hydrogenase-1 operon 31.8 1.8E+02 0.0039 20.2 5.7 71 27-104 25-101 (132)
350 PRK05370 argininosuccinate syn 31.5 1E+02 0.0023 26.1 4.7 71 28-112 4-81 (447)
351 PRK14502 bifunctional mannosyl 31.4 1.4E+02 0.0031 26.8 5.8 75 50-142 62-146 (694)
352 PRK01122 potassium-transportin 31.3 1.1E+02 0.0023 27.5 5.1 55 58-115 412-485 (679)
353 COG1709 Predicted transcriptio 31.2 82 0.0018 24.1 3.7 33 74-116 22-54 (241)
354 PRK13223 phosphoglycolate phos 30.9 1.5E+02 0.0033 22.8 5.4 39 56-95 103-141 (272)
355 TIGR02743 TraW type-F conjugat 30.7 2.3E+02 0.005 21.2 7.3 19 98-116 167-185 (202)
356 PRK11712 ribonuclease G; Provi 30.7 1.8E+02 0.0038 25.1 6.1 108 48-156 205-315 (489)
357 PF08282 Hydrolase_3: haloacid 30.4 1.7E+02 0.0037 21.3 5.5 43 57-102 18-60 (254)
358 PRK14010 potassium-transportin 30.4 1.2E+02 0.0025 27.2 5.1 28 86-115 450-481 (673)
359 COG3322 Predicted periplasmic 30.3 67 0.0014 25.6 3.3 17 132-148 107-123 (295)
360 PRK11009 aphA acid phosphatase 30.2 1.1E+02 0.0024 23.4 4.5 44 58-102 118-167 (237)
361 PF01924 HypD: Hydrogenase for 30.1 67 0.0015 26.3 3.3 32 40-72 49-80 (355)
362 PF12017 Tnp_P_element: Transp 29.8 2E+02 0.0044 22.1 5.8 39 56-95 195-233 (236)
363 cd03037 GST_N_GRX2 GST_N famil 29.7 96 0.0021 18.1 3.4 10 45-54 6-15 (71)
364 TIGR01548 HAD-SF-IA-hyp1 haloa 29.4 1.9E+02 0.004 20.8 5.5 36 59-95 111-146 (197)
365 TIGR01681 HAD-SF-IIIC HAD-supe 29.4 1.6E+02 0.0035 19.8 4.8 37 56-93 31-68 (128)
366 TIGR01680 Veg_Stor_Prot vegeta 29.4 1.5E+02 0.0033 23.3 5.1 44 49-95 142-188 (275)
367 TIGR03556 photolyase_8HDF deox 29.3 2E+02 0.0043 24.4 6.2 39 56-95 54-92 (471)
368 PF10588 NADH-G_4Fe-4S_3: NADH 29.2 58 0.0013 17.6 2.1 21 47-67 15-35 (41)
369 PLN02887 hydrolase family prot 29.2 2.3E+02 0.0049 24.9 6.6 38 57-95 328-365 (580)
370 cd03061 GST_N_CLIC GST_N famil 29.1 36 0.00078 22.0 1.4 50 46-108 20-72 (91)
371 TIGR01512 ATPase-IB2_Cd heavy 29.1 1.3E+02 0.0028 25.8 5.2 58 56-114 364-423 (536)
372 cd08350 BLMT_like BLMT, a bleo 29.0 1.6E+02 0.0035 18.9 5.1 21 74-95 62-82 (120)
373 cd03056 GST_N_4 GST_N family, 28.9 28 0.00061 20.4 0.8 9 45-53 6-14 (73)
374 TIGR01511 ATPase-IB1_Cu copper 28.7 1.4E+02 0.003 25.9 5.2 39 56-95 407-445 (562)
375 PLN02575 haloacid dehalogenase 28.6 1.7E+02 0.0037 24.2 5.5 45 56-101 218-262 (381)
376 PF04800 ETC_C1_NDUFA4: ETC co 28.6 75 0.0016 21.1 2.8 28 74-104 51-78 (101)
377 cd08342 HPPD_N_like N-terminal 28.5 1.8E+02 0.004 19.4 5.1 55 69-146 68-122 (136)
378 cd08351 ChaP_like ChaP, an enz 28.4 1.7E+02 0.0037 19.0 5.3 17 130-146 104-120 (123)
379 PRK09628 oorB 2-oxoglutarate-a 28.4 94 0.002 24.4 3.9 27 41-69 12-38 (277)
380 PRK01018 50S ribosomal protein 28.3 1.7E+02 0.0037 19.0 7.9 52 61-115 23-78 (99)
381 cd02008 TPP_IOR_alpha Thiamine 28.2 49 0.0011 23.8 2.1 23 44-68 3-25 (178)
382 cd08344 MhqB_like_N N-terminal 28.2 1.6E+02 0.0036 18.7 5.5 47 77-147 63-109 (112)
383 PF10673 DUF2487: Protein of u 28.2 1.5E+02 0.0032 21.0 4.4 24 58-81 72-95 (142)
384 PF13596 PAS_10: PAS domain; P 27.9 72 0.0016 20.3 2.7 17 131-147 11-27 (106)
385 PRK04011 peptide chain release 27.9 1.4E+02 0.0029 25.0 4.9 24 58-82 368-391 (411)
386 PRK14988 GMP/IMP nucleotidase; 27.9 1.4E+02 0.003 22.2 4.6 59 56-115 95-165 (224)
387 PF10589 NADH_4Fe-4S: NADH-ubi 27.8 16 0.00035 20.4 -0.4 21 46-67 17-37 (46)
388 TIGR00591 phr2 photolyase PhrI 27.8 2.3E+02 0.005 23.7 6.3 38 57-95 78-115 (454)
389 PF06342 DUF1057: Alpha/beta h 27.7 3.2E+02 0.0069 21.9 6.6 92 38-147 37-145 (297)
390 TIGR01487 SPP-like sucrose-pho 27.7 2E+02 0.0043 21.0 5.4 38 57-95 21-58 (215)
391 TIGR01647 ATPase-IIIA_H plasma 27.6 1.4E+02 0.003 27.0 5.2 38 57-95 445-482 (755)
392 KOG1615 Phosphoserine phosphat 27.6 1.9E+02 0.0042 21.9 5.1 38 56-95 90-128 (227)
393 TIGR00014 arsC arsenate reduct 27.5 87 0.0019 20.8 3.1 64 42-115 3-70 (114)
394 TIGR01497 kdpB K+-transporting 27.4 1.5E+02 0.0032 26.6 5.2 55 58-115 413-486 (675)
395 cd03049 GST_N_3 GST_N family, 27.4 70 0.0015 18.8 2.5 10 45-54 6-15 (73)
396 COG0415 PhrB Deoxyribodipyrimi 27.4 2.2E+02 0.0047 24.3 6.0 38 57-95 55-92 (461)
397 TIGR01668 YqeG_hyp_ppase HAD s 27.1 1.9E+02 0.0041 20.5 5.0 39 56-95 45-84 (170)
398 KOG3170 Conserved phosducin-li 27.0 66 0.0014 24.3 2.6 41 35-79 111-151 (240)
399 TIGR01422 phosphonatase phosph 26.8 1.2E+02 0.0027 22.8 4.2 39 56-95 101-139 (253)
400 PRK15062 hydrogenase isoenzyme 26.8 71 0.0015 26.3 2.9 33 40-73 54-86 (364)
401 PF09673 TrbC_Ftype: Type-F co 26.7 2E+02 0.0043 19.2 5.9 58 57-116 11-71 (113)
402 cd08353 Glo_EDI_BRP_like_7 Thi 26.6 2E+02 0.0043 19.1 6.3 54 68-144 85-138 (142)
403 PRK10530 pyridoxal phosphate ( 26.6 2.2E+02 0.0047 21.5 5.6 35 60-95 26-60 (272)
404 TIGR01686 FkbH FkbH-like domai 26.6 1.9E+02 0.0041 22.9 5.4 59 56-115 33-102 (320)
405 PRK10976 putative hydrolase; P 26.4 2.5E+02 0.0055 21.2 5.9 36 59-95 24-59 (266)
406 TIGR01352 tonB_Cterm TonB fami 26.3 73 0.0016 18.7 2.4 16 132-147 15-30 (74)
407 PF09885 DUF2112: Uncharacteri 26.3 2.4E+02 0.0051 19.9 5.2 44 45-92 93-136 (143)
408 PRK12359 flavodoxin FldB; Prov 26.3 1.7E+02 0.0037 21.2 4.7 11 85-95 104-114 (172)
409 cd00291 SirA_YedF_YeeD SirA, Y 26.2 1.4E+02 0.0031 17.3 3.8 28 74-103 29-58 (69)
410 PF10150 RNase_E_G: Ribonuclea 26.1 1E+02 0.0022 24.1 3.7 100 47-150 81-186 (271)
411 PF02743 Cache_1: Cache domain 26.1 40 0.00088 20.5 1.2 14 132-145 56-69 (81)
412 TIGR01685 MDP-1 magnesium-depe 26.0 2.4E+02 0.0051 20.5 5.4 39 56-95 47-86 (174)
413 cd03055 GST_N_Omega GST_N fami 26.0 96 0.0021 19.3 3.0 15 38-54 19-33 (89)
414 smart00734 ZnF_Rad18 Rad18-lik 26.0 68 0.0015 15.5 1.8 9 47-56 3-11 (26)
415 TIGR01670 YrbI-phosphatas 3-de 25.9 1.5E+02 0.0032 20.7 4.3 33 62-95 36-68 (154)
416 PF11720 Inhibitor_I78: Peptid 25.9 87 0.0019 18.4 2.6 18 128-145 41-58 (60)
417 PRK11033 zntA zinc/cadmium/mer 25.9 1.5E+02 0.0033 26.7 5.2 39 56-95 570-608 (741)
418 cd03052 GST_N_GDAP1 GST_N fami 25.8 42 0.00092 20.2 1.2 17 88-105 43-59 (73)
419 TIGR00377 ant_ant_sig anti-ant 25.7 1.8E+02 0.0039 18.4 5.0 17 56-72 61-77 (108)
420 PF14768 RPA_interact_C: Repli 25.6 33 0.00071 21.7 0.7 8 47-54 1-8 (82)
421 TIGR00757 RNaseEG ribonuclease 25.6 2.7E+02 0.0058 23.3 6.2 67 83-150 228-297 (414)
422 PF07555 NAGidase: beta-N-acet 25.4 2E+02 0.0043 23.0 5.2 59 45-104 44-114 (306)
423 KOG0780 Signal recognition par 25.3 4.2E+02 0.0091 22.4 7.4 93 34-141 98-195 (483)
424 PRK10178 D-alanyl-D-alanine di 25.3 2.2E+02 0.0047 21.1 5.0 79 48-144 37-118 (184)
425 TIGR01525 ATPase-IB_hvy heavy 25.2 1.8E+02 0.0039 25.1 5.3 39 56-95 386-425 (556)
426 TIGR01486 HAD-SF-IIB-MPGP mann 25.1 2.5E+02 0.0054 21.2 5.7 36 59-95 21-56 (256)
427 TIGR02313 HpaI-NOT-DapA 2,4-di 25.1 3.4E+02 0.0074 21.3 8.0 69 35-112 127-196 (294)
428 PRK14315 glmM phosphoglucosami 25.0 3.2E+02 0.0069 22.8 6.7 22 82-105 224-245 (448)
429 cd03053 GST_N_Phi GST_N family 24.7 46 0.00099 19.8 1.2 13 41-53 3-15 (76)
430 COG5429 Uncharacterized secret 24.6 1.1E+02 0.0023 23.8 3.4 51 37-94 42-109 (261)
431 PF05742 NRDE: NRDE protein; 24.5 1.1E+02 0.0023 23.9 3.6 24 124-147 234-257 (273)
432 cd03033 ArsC_15kD Arsenate Red 24.3 29 0.00063 23.3 0.3 46 42-95 4-52 (113)
433 PF08806 Sep15_SelM: Sep15/Sel 24.3 62 0.0013 20.3 1.8 32 130-163 43-74 (78)
434 COG1832 Predicted CoA-binding 24.2 1.5E+02 0.0034 20.8 3.9 31 68-100 16-49 (140)
435 COG3019 Predicted metal-bindin 24.2 1.5E+02 0.0032 21.1 3.8 46 38-95 26-71 (149)
436 PRK10200 putative racemase; Pr 24.1 2.2E+02 0.0048 21.5 5.1 43 56-102 61-103 (230)
437 PF09631 Sen15: Sen15 protein; 24.1 80 0.0017 20.6 2.4 18 132-149 77-94 (101)
438 KOG3559 Transcriptional regula 24.0 69 0.0015 26.9 2.4 14 132-145 92-105 (598)
439 TIGR03831 YgiT_finger YgiT-typ 24.0 49 0.0011 17.7 1.2 21 34-54 21-41 (46)
440 PF14903 WG_beta_rep: WG conta 24.0 62 0.0013 16.0 1.5 14 134-147 3-16 (35)
441 PF12687 DUF3801: Protein of u 23.8 1.5E+02 0.0033 22.1 4.1 33 69-104 32-64 (204)
442 PF06217 GAGA_bind: GAGA bindi 23.8 1.4E+02 0.0031 23.8 4.1 37 56-99 262-298 (301)
443 TIGR00075 hypD hydrogenase exp 23.8 88 0.0019 25.8 3.0 33 40-73 60-92 (369)
444 PF02142 MGS: MGS-like domain 23.8 2E+02 0.0043 18.2 4.5 31 59-95 2-32 (95)
445 TIGR03499 FlhF flagellar biosy 23.7 2.9E+02 0.0063 21.5 5.9 67 57-139 209-282 (282)
446 KOG4549 Magnesium-dependent ph 23.7 2.3E+02 0.0049 19.9 4.5 37 58-95 48-85 (144)
447 PF11211 DUF2997: Protein of u 23.6 1E+02 0.0022 17.4 2.4 16 132-147 2-17 (48)
448 cd03031 GRX_GRX_like Glutaredo 23.4 1.8E+02 0.0038 20.6 4.2 25 47-80 15-39 (147)
449 PF03767 Acid_phosphat_B: HAD 23.3 1.8E+02 0.0039 22.0 4.5 39 56-95 117-158 (229)
450 PF09494 Slx4: Slx4 endonuclea 23.3 1.7E+02 0.0038 17.3 3.7 35 58-95 26-60 (64)
451 TIGR01509 HAD-SF-IA-v3 haloaci 23.1 2E+02 0.0044 19.9 4.6 38 56-95 87-124 (183)
452 PF12874 zf-met: Zinc-finger o 23.0 21 0.00045 16.5 -0.5 20 47-67 2-21 (25)
453 COG0409 HypD Hydrogenase matur 23.0 92 0.002 25.3 2.9 70 28-105 47-121 (364)
454 PF14435 SUKH-4: SUKH-4 immuni 23.0 2.8E+02 0.0062 19.6 5.6 81 81-161 27-120 (179)
455 PF05673 DUF815: Protein of un 23.0 2.3E+02 0.0049 22.1 4.9 46 56-104 66-114 (249)
456 PF10281 Ish1: Putative stress 22.9 76 0.0017 16.6 1.8 15 81-95 5-19 (38)
457 COG3593 Predicted ATP-dependen 22.9 1E+02 0.0022 27.1 3.3 42 64-108 420-461 (581)
458 KOG1209 1-Acyl dihydroxyaceton 22.8 1.3E+02 0.0028 23.3 3.5 34 60-95 22-55 (289)
459 PRK10853 putative reductase; P 22.7 79 0.0017 21.3 2.2 62 41-115 3-68 (118)
460 PF09526 DUF2387: Probable met 22.7 20 0.00044 22.1 -0.7 33 42-80 5-37 (71)
461 PF06764 DUF1223: Protein of u 22.6 1.5E+02 0.0032 22.2 3.8 52 39-95 1-67 (202)
462 PF11576 DUF3236: Protein of u 22.6 1.9E+02 0.0041 20.6 4.0 29 132-160 111-139 (154)
463 PHA02762 hypothetical protein; 22.6 1.2E+02 0.0026 17.7 2.5 17 132-148 31-47 (62)
464 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.5 1.3E+02 0.0028 19.7 3.3 25 56-81 59-83 (126)
465 TIGR01261 hisB_Nterm histidino 22.4 2.2E+02 0.0048 20.2 4.6 40 56-98 31-85 (161)
466 COG1167 ARO8 Transcriptional r 22.3 3.4E+02 0.0074 22.8 6.4 88 56-146 186-296 (459)
467 PLN02331 phosphoribosylglycina 22.3 2.3E+02 0.0051 21.2 4.9 21 82-104 67-87 (207)
468 COG2999 GrxB Glutaredoxin 2 [P 22.3 39 0.00083 25.1 0.6 58 46-114 7-65 (215)
469 COG0637 Predicted phosphatase/ 22.3 1.4E+02 0.003 22.3 3.7 59 56-115 88-158 (221)
470 COG2956 Predicted N-acetylgluc 22.2 46 0.00099 27.2 1.1 13 39-54 365-377 (389)
471 PF03960 ArsC: ArsC family; I 22.2 1.3E+02 0.0028 19.6 3.2 47 64-113 14-64 (110)
472 TIGR01533 lipo_e_P4 5'-nucleot 22.2 3.4E+02 0.0074 21.2 5.9 75 17-95 79-161 (266)
473 PRK13601 putative L7Ae-like ri 22.0 2.2E+02 0.0047 18.0 7.1 52 61-116 15-70 (82)
474 COG1180 PflA Pyruvate-formate 21.9 3.7E+02 0.0081 20.7 6.1 31 27-58 27-59 (260)
475 PF03725 RNase_PH_C: 3' exorib 21.8 1.4E+02 0.003 17.4 3.0 32 131-162 31-63 (68)
476 PRK15122 magnesium-transportin 21.7 2E+02 0.0043 26.7 5.1 37 58-95 554-590 (903)
477 TIGR00546 lnt apolipoprotein N 21.7 1.7E+02 0.0036 23.9 4.3 10 132-141 382-391 (391)
478 PLN02367 lactoylglutathione ly 21.6 3.8E+02 0.0082 20.6 6.4 55 69-147 168-222 (233)
479 PRK03094 hypothetical protein; 21.6 2.1E+02 0.0046 18.1 3.8 18 58-75 9-26 (80)
480 PRK00192 mannosyl-3-phosphogly 21.5 3E+02 0.0065 21.0 5.6 38 57-95 24-61 (273)
481 PF05379 Peptidase_C23: Carlav 21.5 1.9E+02 0.0041 18.6 3.7 76 60-149 8-84 (89)
482 PF10453 NUFIP1: Nuclear fragi 21.4 70 0.0015 18.7 1.5 24 77-102 15-38 (56)
483 smart00775 LNS2 LNS2 domain. T 21.3 3E+02 0.0065 19.3 6.1 50 57-108 30-87 (157)
484 TIGR00108 eRF peptide chain re 21.3 2.3E+02 0.0049 23.7 5.0 42 48-92 349-396 (409)
485 PRK10517 magnesium-transportin 21.2 2E+02 0.0044 26.7 5.1 38 57-95 553-590 (902)
486 cd05014 SIS_Kpsf KpsF-like pro 21.2 81 0.0018 20.8 2.1 25 56-81 60-84 (128)
487 cd02511 Beta4Glucosyltransfera 21.1 3.2E+02 0.007 20.0 5.5 8 98-105 74-81 (229)
488 PF04423 Rad50_zn_hook: Rad50 21.0 34 0.00073 19.6 0.1 12 47-59 22-33 (54)
489 TIGR01524 ATPase-IIIB_Mg magne 20.9 2.1E+02 0.0045 26.4 5.1 37 58-95 519-555 (867)
490 PF06888 Put_Phosphatase: Puta 20.7 3E+02 0.0065 21.1 5.2 79 56-143 43-134 (234)
491 TIGR01522 ATPase-IIA2_Ca golgi 20.4 2.2E+02 0.0047 26.3 5.1 38 57-95 531-568 (884)
492 KOG1842 FYVE finger-containing 20.2 57 0.0012 27.6 1.2 20 47-67 17-36 (505)
493 cd03423 SirA SirA (also known 20.2 1.9E+02 0.0042 17.1 3.4 21 81-103 38-58 (69)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=215.38 Aligned_cols=152 Identities=26% Similarity=0.360 Sum_probs=131.0
Q ss_pred CCCCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 1 SAAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 1 ~~~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
.+.|++|+++|||+ +.+++|+. ++|+|+ +|++|||+|||..++|.|..| +..|++.+++|++.|+.|+| ||+|
T Consensus 1 ~~~l~~G~~aPdF~--Lp~~~g~~--v~Lsd~-~Gk~VVLyFYPk~~TpgCT~E-a~~Frd~~~ef~~~~a~V~G-IS~D 73 (157)
T COG1225 1 MMMLKVGDKAPDFE--LPDQDGET--VSLSDL-RGKPVVLYFYPKDFTPGCTTE-ACDFRDLLEEFEKLGAVVLG-ISPD 73 (157)
T ss_pred CCcCCCCCcCCCeE--eecCCCCE--EehHHh-cCCcEEEEECCCCCCCcchHH-HHHHHHHHHHHHhCCCEEEE-EeCC
Confidence 36899999999999 46888988 999999 699999999999999999998 99999999999999999999 9999
Q ss_pred CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHH
Q 045485 81 DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 160 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~ 160 (164)
+++.+++|+++++++ |++|||+++.++++||+........-....+.|++||||++|+|+++|.. .-...+++++
T Consensus 74 s~~~~~~F~~k~~L~--f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~---v~~~~h~~~v 148 (157)
T COG1225 74 SPKSHKKFAEKHGLT--FPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRK---VKVKGHADEV 148 (157)
T ss_pred CHHHHHHHHHHhCCC--ceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecC---CCCcccHHHH
Confidence 999999999999999 99999999999999999764211000112355889999999999999943 3346688888
Q ss_pred HhhC
Q 045485 161 LKAL 164 (164)
Q Consensus 161 l~~l 164 (164)
|+.|
T Consensus 149 l~~l 152 (157)
T COG1225 149 LAAL 152 (157)
T ss_pred HHHH
Confidence 8754
No 2
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=100.00 E-value=2.2e-32 Score=201.75 Aligned_cols=147 Identities=22% Similarity=0.410 Sum_probs=126.5
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHH
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAF 83 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~ 83 (164)
+.+|.++|+|+.+..- +|+..+++|+++ +||++||+|||++|||+|..| ++.|++++++|+++|+++++ ||.|+++
T Consensus 2 ~~~~~~~p~f~~~~~~-~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~e-l~~l~~~~~~f~~~g~~vig-IS~D~~~ 77 (187)
T PRK10382 2 SLINTKIKPFKNQAFK-NGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTE-LGDVADHYEELQKLGVDVYS-VSTDTHF 77 (187)
T ss_pred CccCCcCCCcEEEEEe-CCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHH-HHHHHHHHHHHHhCCCEEEE-EeCCCHH
Confidence 5789999999976532 577778999999 799999999999999999997 99999999999999999999 9999999
Q ss_pred HHHHHHHHh----CCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHH
Q 045485 84 VMKAWKENL----GINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAED 159 (164)
Q Consensus 84 ~~~~~~~~~----~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~ 159 (164)
.+++|.+.. +++ ||+++|+++.++++||+.... .+++.|++||||++|+|+++++++. .. ..++++
T Consensus 78 ~~~a~~~~~~~~~~l~--fpllsD~~~~ia~~ygv~~~~------~g~~~r~tfIID~~G~I~~~~~~~~-~~-~~~~~e 147 (187)
T PRK10382 78 THKAWHSSSETIAKIK--YAMIGDPTGALTRNFDNMRED------EGLADRATFVVDPQGIIQAIEVTAE-GI-GRDASD 147 (187)
T ss_pred HHHHHHHhhccccCCc--eeEEEcCchHHHHHcCCCccc------CCceeeEEEEECCCCEEEEEEEeCC-CC-CCCHHH
Confidence 999999774 677 999999999999999996431 1456688999999999999999753 23 347888
Q ss_pred HHhhC
Q 045485 160 MLKAL 164 (164)
Q Consensus 160 ~l~~l 164 (164)
+|+.|
T Consensus 148 il~~l 152 (187)
T PRK10382 148 LLRKI 152 (187)
T ss_pred HHHHH
Confidence 87653
No 3
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.98 E-value=2e-31 Score=197.08 Aligned_cols=144 Identities=26% Similarity=0.493 Sum_probs=121.8
Q ss_pred CCCCCCCCeeeeeec-CCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHH
Q 045485 5 SVGDKLPDATLSYFD-SAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAF 83 (164)
Q Consensus 5 ~~G~~~P~f~l~~~~-~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~ 83 (164)
.+|+++|+|++ .+ .+|+..+++++++ +||++||+|||++|||+|+.+ ++.|++++++|+++|+.+|+ ||.|+++
T Consensus 3 ~~G~~aP~f~l--~~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~e-l~~l~~~~~~~~~~gv~vi~-VS~D~~~ 77 (187)
T TIGR03137 3 LINTEIKPFKA--TAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTE-LEDLADKYAELKKLGVEVYS-VSTDTHF 77 (187)
T ss_pred ccCCcCCCcEe--eeccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHH-HHHHHHHHHHHHhcCCcEEE-EeCCCHH
Confidence 67999999995 45 4676445899999 799999999999999999997 99999999999999999999 9999999
Q ss_pred HHHHHHHHh----CCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHH
Q 045485 84 VMKAWKENL----GINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAED 159 (164)
Q Consensus 84 ~~~~~~~~~----~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~ 159 (164)
.+++|.+.. +++ |++++|+++.+++.||+.... .+++.|++||||++|+|++.+++.. +.. .++++
T Consensus 78 ~~~~~~~~~~~~~~l~--fpllsD~~~~~a~~~gv~~~~------~g~~~p~tfiID~~G~I~~~~~~~~-~~~-~~~~~ 147 (187)
T TIGR03137 78 VHKAWHDTSEAIGKIT--YPMLGDPTGVLTRNFGVLIEE------AGLADRGTFVIDPEGVIQAVEITDN-GIG-RDASE 147 (187)
T ss_pred HHHHHHhhhhhccCcc--eeEEECCccHHHHHhCCcccC------CCceeeEEEEECCCCEEEEEEEeCC-CCC-CCHHH
Confidence 999998765 577 999999999999999997531 1345688999999999999998753 222 37787
Q ss_pred HHhh
Q 045485 160 MLKA 163 (164)
Q Consensus 160 ~l~~ 163 (164)
+|+.
T Consensus 148 ll~~ 151 (187)
T TIGR03137 148 LLRK 151 (187)
T ss_pred HHHH
Confidence 7764
No 4
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.98 E-value=3.4e-31 Score=203.54 Aligned_cols=147 Identities=27% Similarity=0.424 Sum_probs=124.1
Q ss_pred CCCCCCCCCCeeeeeec-CCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 3 AISVGDKLPDATLSYFD-SAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~-~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
.+.+|+++|+|+++ + .+|+...++|+++.+|+++||+|||++|||+|..| ++.|++++++|+++|++|++ ||.|+
T Consensus 67 ~~~vGd~aPdF~l~--~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~E-l~~l~~~~~ef~~~gv~Vig-IS~Ds 142 (261)
T PTZ00137 67 SSLVGKLMPSFKGT--ALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSE-LLGFSERLKEFEERGVKVLG-VSVDS 142 (261)
T ss_pred cccCCCCCCCCEee--cccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCCEEEE-EECCC
Confidence 46799999999964 3 35554459999986688999999999999999997 99999999999999999999 99999
Q ss_pred HHHHHHHHHH-------hCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceee
Q 045485 82 AFVMKAWKEN-------LGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTF 154 (164)
Q Consensus 82 ~~~~~~~~~~-------~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~ 154 (164)
++.+++|.+. .+++ ||+++|+++.++++||+... . |++.|++||||++|+|++.+.++. ...
T Consensus 143 ~~~h~aw~~~~~~~~g~~~l~--fPlLsD~~~~iakayGv~~~------~-g~a~R~tFIID~dG~I~~~~~~~~-~~g- 211 (261)
T PTZ00137 143 PFSHKAWKELDVRQGGVSPLK--FPLFSDISREVSKSFGLLRD------E-GFSHRASVLVDKAGVVKHVAVYDL-GLG- 211 (261)
T ss_pred HHHHHHHHhhhhhhccccCcc--eEEEEcCChHHHHHcCCCCc------C-CceecEEEEECCCCEEEEEEEeCC-CCC-
Confidence 9999999874 4677 99999999999999998642 1 456688999999999999998753 233
Q ss_pred cCHHHHHhhC
Q 045485 155 SGAEDMLKAL 164 (164)
Q Consensus 155 ~~~~~~l~~l 164 (164)
.+++++|+.|
T Consensus 212 r~v~eiLr~l 221 (261)
T PTZ00137 212 RSVDETLRLF 221 (261)
T ss_pred CCHHHHHHHH
Confidence 4888887753
No 5
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.97 E-value=1.1e-30 Score=187.75 Aligned_cols=147 Identities=52% Similarity=0.856 Sum_probs=124.3
Q ss_pred CCCCCCCeeeeeecCC---CceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCC-cEEEEEecCC
Q 045485 6 VGDKLPDATLSYFDSA---GELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGV-DIVACISVND 81 (164)
Q Consensus 6 ~G~~~P~f~l~~~~~~---g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v-~vi~~is~d~ 81 (164)
+|+++|+|++ .+++ |+. ++|+++.+|+++||+|||+.|||.|..||++.|++.+++|+++|+ .|++ ||.|+
T Consensus 1 vG~~aPdF~l--~~~~~~~g~~--v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~-iS~D~ 75 (155)
T cd03013 1 VGDKLPNVTL--FEYVPGPPNP--VNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVIC-VSVND 75 (155)
T ss_pred CCCcCCCeEe--eeeccCCCce--eeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEE-EECCC
Confidence 6999999995 4554 665 999994378899999999999999999669999999999999999 4899 99999
Q ss_pred HHHHHHHHHHhCC--CCceEEEEeCcchHHHHhCCccccCCCCCCC-CcceeEEEEEecCCcEEEEEeecC-CceeecCH
Q 045485 82 AFVMKAWKENLGI--NDEVLLLSDGNGVFTKAIGCELDLSDKPMGL-GVRSRRYALLAENGVVKVLNLEEG-GAFTFSGA 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~-~~~~p~~~lid~~G~I~~~~~~~~-~~~~~~~~ 157 (164)
++.+++|.+++++ + |++++|+++.++++||+...... .+. +.+.|++|||| +|+|+++++... .+.+..++
T Consensus 76 ~~~~~~~~~~~~~~~~--f~lLsD~~~~~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~~~~~~~~~~ 150 (155)
T cd03013 76 PFVMKAWGKALGAKDK--IRFLADGNGEFTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEEDPGDVEVSSA 150 (155)
T ss_pred HHHHHHHHHhhCCCCc--EEEEECCCHHHHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecCCCCccccCH
Confidence 9999999999998 7 99999999999999999765221 121 23569999999 799999999864 36677788
Q ss_pred HHHHh
Q 045485 158 EDMLK 162 (164)
Q Consensus 158 ~~~l~ 162 (164)
+.+|+
T Consensus 151 ~~~~~ 155 (155)
T cd03013 151 ENVLK 155 (155)
T ss_pred HHhcC
Confidence 88764
No 6
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.97 E-value=1.2e-30 Score=185.63 Aligned_cols=145 Identities=29% Similarity=0.499 Sum_probs=126.1
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeehhhhcCC-CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSN-KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA 82 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g-~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~ 82 (164)
|++|+++|+|++ .+.+|+. ++++++ +| +++||+||+++|||.|..+ ++.+++++++++++|+++++ |+.|++
T Consensus 1 ~~~G~~~p~~~l--~~~~g~~--v~l~~~-~g~k~~vl~f~~~~~c~~C~~~-~~~l~~~~~~~~~~~v~vi~-vs~d~~ 73 (149)
T cd03018 1 LEVGDKAPDFEL--PDQNGQE--VRLSEF-RGRKPVVLVFFPLAFTPVCTKE-LCALRDSLELFEAAGAEVLG-ISVDSP 73 (149)
T ss_pred CCCCCcCCCcEe--cCCCCCE--EeHHHH-cCCCeEEEEEeCCCCCccHHHH-HHHHHHHHHHHHhCCCEEEE-ecCCCH
Confidence 578999999984 5778987 999999 68 8899999999999999997 99999999999999999999 899999
Q ss_pred HHHHHHHHHhCCCCceEEEEeCc--chHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecC-CceeecCHHH
Q 045485 83 FVMKAWKENLGINDEVLLLSDGN--GVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG-GAFTFSGAED 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~-~~~~~~~~~~ 159 (164)
+.+++|+++++++ |++++|.+ +.+++.||+..... +.+.|++||||++|+|++.+.++. .....+++++
T Consensus 74 ~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~g~~~~~~------~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~ 145 (149)
T cd03018 74 FSLRAWAEENGLT--FPLLSDFWPHGEVAKAYGVFDEDL------GVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDE 145 (149)
T ss_pred HHHHHHHHhcCCC--ceEecCCCchhHHHHHhCCccccC------CCccceEEEECCCCEEEEEEecCCcccccchhHHH
Confidence 9999999999999 99999987 99999999975311 356678999999999999999853 2355667777
Q ss_pred HHhh
Q 045485 160 MLKA 163 (164)
Q Consensus 160 ~l~~ 163 (164)
+|++
T Consensus 146 ~~~~ 149 (149)
T cd03018 146 ALDA 149 (149)
T ss_pred HhhC
Confidence 7764
No 7
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.97 E-value=1.7e-30 Score=194.12 Aligned_cols=143 Identities=23% Similarity=0.431 Sum_probs=120.0
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA 82 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~ 82 (164)
++++|+++|+|++ .+++| . ++|+++ +||++||+|||++|||+|+.| ++.|++++++|+++|+.+++ ||.|+.
T Consensus 1 ~~~vG~~aP~F~~--~~~~g-~--v~l~d~-~gk~vvL~~~p~~~cp~C~~E-l~~l~~~~~~f~~~~~~vi~-vS~D~~ 72 (202)
T PRK13190 1 PVKLGQKAPDFTV--NTTKG-P--IDLSKY-KGKWVLLFSHPADFTPVCTTE-FIAFSRRYEDFKKLGVELVG-LSVDSI 72 (202)
T ss_pred CCCCCCCCCCcEE--ecCCC-c--EeHHHh-CCCEEEEEEEcCCCCCCCHHH-HHHHHHHHHHHHHCCCEEEE-EeCCCH
Confidence 4689999999995 46666 3 999999 799999999999999999997 99999999999999999999 999999
Q ss_pred HHHHHHHHH----hC--CCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecC
Q 045485 83 FVMKAWKEN----LG--INDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSG 156 (164)
Q Consensus 83 ~~~~~~~~~----~~--~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~ 156 (164)
+.+++|+++ ++ ++ ||+++|+++.++++||+.... .+.+.|++||||++|+|++...++. ....+
T Consensus 73 ~~~~~w~~~~~~~~g~~~~--fPll~D~~~~ia~~ygv~~~~------~g~~~p~~fiId~~G~I~~~~~~~~--~~gr~ 142 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIP--FPVIADIDKELAREYNLIDEN------SGATVRGVFIIDPNQIVRWMIYYPA--ETGRN 142 (202)
T ss_pred HHHHHHHHhHHHhcCCCce--EEEEECCChHHHHHcCCcccc------CCcEEeEEEEECCCCEEEEEEEeCC--CCCCC
Confidence 998888753 45 46 999999999999999996431 1345688999999999999998764 22347
Q ss_pred HHHHHhh
Q 045485 157 AEDMLKA 163 (164)
Q Consensus 157 ~~~~l~~ 163 (164)
++++|+.
T Consensus 143 ~~ellr~ 149 (202)
T PRK13190 143 IDEIIRI 149 (202)
T ss_pred HHHHHHH
Confidence 7777654
No 8
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.97 E-value=1.8e-30 Score=195.53 Aligned_cols=145 Identities=21% Similarity=0.442 Sum_probs=121.0
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhh-hcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSD-LTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d-~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
.+.+|+++|+|++ .+++|+ +.+++ + +||++||+|||++|||+|..| ++.|++++++|+++|++|++ ||.|+
T Consensus 6 ~~~iG~~aPdF~l--~~~~G~---~~l~~~~-~GK~vvLff~pa~ftpvC~tE-l~~l~~~~~ef~~~g~~Vig-vS~Ds 77 (215)
T PRK13191 6 IPLIGEKFPEMEV--ITTHGK---IKLPDDY-KGRWFVLFSHPGDFTPVCTTE-FYSFAKKYEEFKKLNTELIG-LSVDS 77 (215)
T ss_pred cccCCCcCCCCEe--ecCCCC---EEcHHHh-CCCcEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCCEEEE-EECCC
Confidence 4679999999995 567786 56655 6 799999999999999999998 99999999999999999999 99999
Q ss_pred HHHHHHHHHH------hCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeec
Q 045485 82 AFVMKAWKEN------LGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFS 155 (164)
Q Consensus 82 ~~~~~~~~~~------~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~ 155 (164)
.+.+++|.+. ++++ ||+++|+++.++++||+..... . +.+.|++||||++|+|+++++++. ... .
T Consensus 78 ~~~h~aw~~~~~~~~~~~i~--fPllsD~~~~ia~~ygv~~~~~----~-~~~~r~tfIID~~G~Ir~~~~~~~-~~g-r 148 (215)
T PRK13191 78 NISHIEWVMWIEKNLKVEVP--FPIIADPMGNVAKRLGMIHAES----S-TATVRAVFIVDDKGTVRLILYYPM-EIG-R 148 (215)
T ss_pred HHHHHHHHhhHHHhcCCCCc--eEEEECCchHHHHHcCCccccc----C-CceeEEEEEECCCCEEEEEEecCC-CCC-C
Confidence 9999888652 3566 9999999999999999975311 1 345688999999999999999863 344 4
Q ss_pred CHHHHHhhC
Q 045485 156 GAEDMLKAL 164 (164)
Q Consensus 156 ~~~~~l~~l 164 (164)
+++++|+.|
T Consensus 149 ~~~eilr~l 157 (215)
T PRK13191 149 NIDEILRAI 157 (215)
T ss_pred CHHHHHHHH
Confidence 888888753
No 9
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.97 E-value=2.9e-30 Score=194.34 Aligned_cols=145 Identities=21% Similarity=0.414 Sum_probs=121.3
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHH
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAF 83 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~ 83 (164)
+.+|+++|+|++ .+++|+. ..++++ +|+++||+|||++|||+|+.| ++.|++++++|+++|+.+|+ ||.|+.+
T Consensus 2 ~~~Gd~aPdF~l--~t~~G~~--~~~~~~-~Gk~vVL~~~pa~~tpvCt~E-l~~l~~~~~~f~~~gv~vig-IS~D~~~ 74 (215)
T PRK13599 2 KLLGEKFPSMEV--VTTQGVK--RLPEDY-AGKWFVLFSHPADFTPVCTTE-FVEFARKANDFKELNTELIG-LSVDQVF 74 (215)
T ss_pred CCCCCCCCCCEe--ECCCCcE--ecHHHH-CCCeEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCCEEEE-EeCCCHH
Confidence 478999999995 5778886 777899 799999999999999999998 99999999999999999999 9999999
Q ss_pred HHHHHHHH------hCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCH
Q 045485 84 VMKAWKEN------LGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGA 157 (164)
Q Consensus 84 ~~~~~~~~------~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~ 157 (164)
.+++|.+. ++++ ||+++|+++.+++.||+..... + ..+.|++||||++|+|++++.++. ....++
T Consensus 75 ~~~~w~~~i~~~~~~~i~--fPil~D~~~~va~~yg~~~~~~----~-~~~~R~tfIID~dG~Ir~~~~~p~--~~gr~~ 145 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIP--FPVIADDLGKVSNQLGMIHPGK----G-TNTVRAVFIVDDKGTIRLIMYYPQ--EVGRNV 145 (215)
T ss_pred HHHHHHHhHHHhcCCCCc--eeEEECCCchHHHHcCCCccCC----C-CceeeEEEEECCCCEEEEEEEcCC--CCCCCH
Confidence 99888652 3567 9999999999999999865311 1 124588999999999999998753 234578
Q ss_pred HHHHhhC
Q 045485 158 EDMLKAL 164 (164)
Q Consensus 158 ~~~l~~l 164 (164)
+++|+.|
T Consensus 146 ~eilr~l 152 (215)
T PRK13599 146 DEILRAL 152 (215)
T ss_pred HHHHHHH
Confidence 8887653
No 10
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.97 E-value=4.7e-30 Score=186.58 Aligned_cols=149 Identities=28% Similarity=0.341 Sum_probs=124.4
Q ss_pred CCCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 2 AAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 2 ~~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
..+.+|+++|+|++ .+.+|+. ++|+++ +||++||+||++.|||+|..| ++.|+++++++ .++.|++ ||.|+
T Consensus 16 ~~~~~G~~~P~f~l--~~~~g~~--v~l~~~-~Gk~vvl~f~~s~~cp~C~~e-~~~l~~~~~~~--~~~~vv~-vs~D~ 86 (167)
T PRK00522 16 SLPQVGDKAPDFTL--VANDLSD--VSLADF-AGKRKVLNIFPSIDTGVCATS-VRKFNQEAAEL--DNTVVLC-ISADL 86 (167)
T ss_pred CCCCCCCCCCCeEE--EcCCCcE--EehHHh-CCCEEEEEEEcCCCCCccHHH-HHHHHHHHHHc--CCcEEEE-EeCCC
Confidence 35789999999994 5778887 999999 799999999955559999998 99999999998 4899999 89999
Q ss_pred HHHHHHHHHHhCCCCceEEEEe-CcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHH
Q 045485 82 AFVMKAWKENLGINDEVLLLSD-GNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~D-~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~ 160 (164)
++.+++|+++++++ .+++++| +++.++++||+.... ....|++.|++||||++|+|++.+++.+ ....++++++
T Consensus 87 ~~~~~~f~~~~~~~-~~~~lsD~~~~~~~~~~gv~~~~---~~~~g~~~r~tfvId~~G~I~~~~~~~~-~~~~~~~~~~ 161 (167)
T PRK00522 87 PFAQKRFCGAEGLE-NVITLSDFRDHSFGKAYGVAIAE---GPLKGLLARAVFVLDENNKVVYSELVPE-ITNEPDYDAA 161 (167)
T ss_pred HHHHHHHHHhCCCC-CceEeecCCccHHHHHhCCeecc---cccCCceeeEEEEECCCCeEEEEEECCC-cCCCCCHHHH
Confidence 99999999999986 4799999 466999999997531 0012567789999999999999998653 4556789998
Q ss_pred HhhC
Q 045485 161 LKAL 164 (164)
Q Consensus 161 l~~l 164 (164)
|++|
T Consensus 162 l~~l 165 (167)
T PRK00522 162 LAAL 165 (167)
T ss_pred HHHh
Confidence 8764
No 11
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.97 E-value=1.7e-30 Score=184.36 Aligned_cols=146 Identities=29% Similarity=0.451 Sum_probs=117.6
Q ss_pred CCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHH
Q 045485 5 SVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFV 84 (164)
Q Consensus 5 ~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~ 84 (164)
++|+++|+|+++..+.+|+. ++|+++ +||++||+||.+.|||+|..+ +|.++++++.++++|+.+++ |+.++...
T Consensus 1 k~G~~~P~~~~~~~~~~g~~--~~l~~~-~gk~~vv~f~~~~~Cp~C~~~-~p~l~~l~~~~~~~~v~~v~-v~~~~~~~ 75 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKP--VSLSDF-KGKPVVVNFWASAWCPPCRKE-LPYLNELQEKYKDKGVDVVG-VSSDDDPP 75 (146)
T ss_dssp STTSB--CCEEEEEETTSEE--EEGGGG-TTSEEEEEEESTTTSHHHHHH-HHHHHHHHHHHHTTTCEEEE-EEESSSHH
T ss_pred CCCCCCCCeEEEeecCCCCE--ecHHHh-CCCeEEEEEEccCCCCcchhh-hhhHHhhhhhhccCceEEEE-ecccCCHH
Confidence 68999999997655689988 999998 899999999844499999998 99999999999999999999 55554444
Q ss_pred HHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHH
Q 045485 85 MKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDML 161 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l 161 (164)
+.+|+++++.+ |+++.|+++.++++||+........ +...|++||||++|+|++.+.+.... +.++++++|
T Consensus 76 ~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~---~~~~P~~~lId~~G~V~~~~~g~~~~-~~~~~~~~l 146 (146)
T PF08534_consen 76 VREFLKKYGIN--FPVLSDPDGALAKALGVTIMEDPGN---GFGIPTTFLIDKDGKVVYRHVGPDPD-EESDLEAVL 146 (146)
T ss_dssp HHHHHHHTTTT--SEEEEETTSHHHHHTTCEEECCTTT---TSSSSEEEEEETTSBEEEEEESSBTT-SHHSHHHHH
T ss_pred HHHHHHhhCCC--ceEEechHHHHHHHhCCcccccccc---CCeecEEEEEECCCEEEEEEeCCCCC-CCCChhhcC
Confidence 99999999999 9999999999999999863211110 12347799999999999999986532 477888876
No 12
>PRK15000 peroxidase; Provisional
Probab=99.97 E-value=7.8e-30 Score=190.20 Aligned_cols=148 Identities=27% Similarity=0.444 Sum_probs=120.1
Q ss_pred CCCCCCCCCeeeeeecCCCce-eeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH
Q 045485 4 ISVGDKLPDATLSYFDSAGEL-QTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA 82 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~-~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~ 82 (164)
..+|+++|+|+++....+|+. ..++|+++.+||++||+||+++|||+|+.| ++.|++++++|+++|+++++ ||.|++
T Consensus 2 ~~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~E-l~~l~~~~~~f~~~g~~vig-vS~D~~ 79 (200)
T PRK15000 2 VLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSE-LIAFDKRYEEFQKRGVEVVG-VSFDSE 79 (200)
T ss_pred CcCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCCEEEE-EECCCH
Confidence 358999999996422223442 136788876789999999999999999998 99999999999999999999 999999
Q ss_pred HHHHHHHHH----hC---CCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeec
Q 045485 83 FVMKAWKEN----LG---INDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFS 155 (164)
Q Consensus 83 ~~~~~~~~~----~~---~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~ 155 (164)
+.+++|.+. .| ++ ||+++|+++.+++.||+.... .+++.|++||||++|+|++.+.++. +. .+
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~--fpllsD~~~~ia~~ygv~~~~------~g~~~r~tfiID~~G~I~~~~~~~~-~~-gr 149 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVK--YAMVADVKREIQKAYGIEHPD------EGVALRGSFLIDANGIVRHQVVNDL-PL-GR 149 (200)
T ss_pred HHHHHHHhhHHHhCCccccC--ceEEECCCcHHHHHcCCccCC------CCcEEeEEEEECCCCEEEEEEecCC-CC-CC
Confidence 999888654 34 46 999999999999999997531 1456688999999999999999753 23 34
Q ss_pred CHHHHHhh
Q 045485 156 GAEDMLKA 163 (164)
Q Consensus 156 ~~~~~l~~ 163 (164)
+++++|+.
T Consensus 150 ~~~eilr~ 157 (200)
T PRK15000 150 NIDEMLRM 157 (200)
T ss_pred CHHHHHHH
Confidence 78888765
No 13
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.97 E-value=1.2e-29 Score=185.25 Aligned_cols=141 Identities=23% Similarity=0.400 Sum_probs=118.3
Q ss_pred CCCCCCCeeeeeecCCC----ceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 6 VGDKLPDATLSYFDSAG----ELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 6 ~G~~~P~f~l~~~~~~g----~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
+|+++|+|++ .+.+| +. ++|+++ +||++||+||+++|||.|..+ ++.|++++++|+++|+.+++ ||.|+
T Consensus 1 vG~~aP~f~~--~~~~g~~~~~~--~~l~~~-~Gk~vvl~F~~~~~c~~C~~~-l~~l~~~~~~~~~~~v~vv~-Is~d~ 73 (173)
T cd03015 1 VGKKAPDFKA--TAVVPNGEFKE--ISLSDY-KGKWVVLFFYPLDFTFVCPTE-IIAFSDRYEEFKKLNAEVLG-VSTDS 73 (173)
T ss_pred CCCcCCCCEe--ecccCCCCceE--EehHHh-CCCEEEEEEECCCCCCcCHHH-HHHHHHHHHHHHHCCCEEEE-EecCC
Confidence 6999999995 45555 45 999999 799999999999999999997 99999999999999999999 89999
Q ss_pred HHHHHHHHHHh-------CCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceee
Q 045485 82 AFVMKAWKENL-------GINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTF 154 (164)
Q Consensus 82 ~~~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~ 154 (164)
.+..++|++.. +++ |++++|+++.++++||+.... .+++.|++||||++|+|++.+++.. +. .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~~gv~~~~------~~~~~p~~~lID~~G~I~~~~~~~~-~~-~ 143 (173)
T cd03015 74 HFSHLAWRNTPRKEGGLGKIN--FPLLADPKKKISRDYGVLDEE------EGVALRGTFIIDPEGIIRHITVNDL-PV-G 143 (173)
T ss_pred HHHHHHHHHhhhhhCCccCcc--eeEEECCchhHHHHhCCcccc------CCceeeEEEEECCCCeEEEEEecCC-CC-C
Confidence 88888888764 467 999999999999999997541 1345688999999999999998753 22 3
Q ss_pred cCHHHHHhh
Q 045485 155 SGAEDMLKA 163 (164)
Q Consensus 155 ~~~~~~l~~ 163 (164)
++.+++|+.
T Consensus 144 ~~~~~il~~ 152 (173)
T cd03015 144 RSVDETLRV 152 (173)
T ss_pred CCHHHHHHH
Confidence 456666654
No 14
>PRK13189 peroxiredoxin; Provisional
Probab=99.97 E-value=1.2e-29 Score=192.00 Aligned_cols=145 Identities=21% Similarity=0.424 Sum_probs=119.4
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA 82 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~ 82 (164)
.+.+|+++|+|++ .+++|+ ++++++.+||++||+|||++|||+|..| ++.|++++++|+++|++||+ ||.|++
T Consensus 8 ~~~vG~~aPdF~~--~~~~g~---~~l~d~~~Gk~vvL~f~pa~fcpvC~tE-l~~l~~~~~ef~~~~v~Vig-vS~D~~ 80 (222)
T PRK13189 8 MPLIGDKFPEFEV--KTTHGP---IKLPDDYKGKWFVLFSHPADFTPVCTTE-FVAFQKRYDEFRELNTELIG-LSIDQV 80 (222)
T ss_pred cccCCCcCCCcEe--EcCCCC---EeeHHHhCCCeEEEEEeCCCCCCCCHHH-HHHHHHHHHHHHHcCCEEEE-EECCCH
Confidence 3679999999995 466775 7888754789999999999999999997 99999999999999999999 999999
Q ss_pred HHHHHHHHHh------CCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecC
Q 045485 83 FVMKAWKENL------GINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSG 156 (164)
Q Consensus 83 ~~~~~~~~~~------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~ 156 (164)
+.+++|++.. +++ ||+++|+++.++++||+..... + +.+.|++||||++|+|++.++++. . ...+
T Consensus 81 ~~h~aw~~~~~~~~g~~i~--fPllsD~~~~ia~~ygv~~~~~----~-~~~~r~tfIID~~G~Ir~~~~~~~-~-~gr~ 151 (222)
T PRK13189 81 FSHIKWVEWIKEKLGVEIE--FPIIADDRGEIAKKLGMISPGK----G-TNTVRAVFIIDPKGIIRAILYYPQ-E-VGRN 151 (222)
T ss_pred HHHHHHHHhHHHhcCcCcc--eeEEEcCccHHHHHhCCCcccc----C-CCceeEEEEECCCCeEEEEEecCC-C-CCCC
Confidence 9999988752 466 9999999999999999874311 0 125588999999999999998754 2 2335
Q ss_pred HHHHHhh
Q 045485 157 AEDMLKA 163 (164)
Q Consensus 157 ~~~~l~~ 163 (164)
++++|+.
T Consensus 152 ~~eilr~ 158 (222)
T PRK13189 152 MDEILRL 158 (222)
T ss_pred HHHHHHH
Confidence 6666654
No 15
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.97 E-value=2.3e-29 Score=180.36 Aligned_cols=150 Identities=23% Similarity=0.305 Sum_probs=124.1
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA 82 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~ 82 (164)
.+++|+++|+|++ .+.+|+. ++|+++ +||++||+||++.|||.|..+ ++.+++++++++++|+++|+ |+.|++
T Consensus 3 ~~~~g~~~p~f~l--~~~~G~~--~~l~~~-~gk~~ll~f~~~~~~p~C~~~-~~~l~~~~~~~~~~~v~vi~-Is~d~~ 75 (154)
T PRK09437 3 PLKAGDIAPKFSL--PDQDGEQ--VSLTDF-QGQRVLVYFYPKAMTPGCTVQ-ACGLRDNMDELKKAGVVVLG-ISTDKP 75 (154)
T ss_pred cCCCCCcCCCcEe--eCCCCCE--EeHHHh-CCCCEEEEEECCCCCCchHHH-HHHHHHHHHHHHHCCCEEEE-EcCCCH
Confidence 5789999999994 5788987 999999 899999999987899999997 99999999999999999999 899999
Q ss_pred HHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHh
Q 045485 83 FVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLK 162 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~ 162 (164)
+++++|+++++++ |++++|+++.++++||+...............|++||||++|+|++.+.+. ...++.+++|+
T Consensus 76 ~~~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~---~~~~~~~~~~~ 150 (154)
T PRK09437 76 EKLSRFAEKELLN--FTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKF---KTSNHHDVVLD 150 (154)
T ss_pred HHHHHHHHHhCCC--CeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCC---CcchhHHHHHH
Confidence 9999999999999 999999999999999987532111000001126799999999999999863 22455777776
Q ss_pred hC
Q 045485 163 AL 164 (164)
Q Consensus 163 ~l 164 (164)
++
T Consensus 151 ~~ 152 (154)
T PRK09437 151 YL 152 (154)
T ss_pred HH
Confidence 53
No 16
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.97 E-value=2.1e-29 Score=178.33 Aligned_cols=140 Identities=31% Similarity=0.417 Sum_probs=121.2
Q ss_pred CCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHH
Q 045485 5 SVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFV 84 (164)
Q Consensus 5 ~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~ 84 (164)
++|+++|+|++ .+.+|+. ++|+++ +||++||+||++.|||+|..+ ++.|+++++++ +|+.+|+ ||.|+++.
T Consensus 1 ~~G~~aP~f~l--~~~~g~~--~~l~~~-~gk~vvl~f~~~~~c~~C~~e-~~~l~~~~~~~--~~~~vi~-Is~d~~~~ 71 (143)
T cd03014 1 KVGDKAPDFTL--VTSDLSE--VSLADF-AGKVKVISVFPSIDTPVCATQ-TKRFNKEAAKL--DNTVVLT-ISADLPFA 71 (143)
T ss_pred CCCCCCCCcEE--ECCCCcE--EeHHHh-CCCeEEEEEEcCCCCCcCHHH-HHHHHHHHHhc--CCCEEEE-EECCCHHH
Confidence 47999999994 5788887 999999 799999999976668999998 99999999998 5899999 89999999
Q ss_pred HHHHHHHhCC-CCceEEEEeCc-chHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHh
Q 045485 85 MKAWKENLGI-NDEVLLLSDGN-GVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLK 162 (164)
Q Consensus 85 ~~~~~~~~~~-~~~~~~l~D~~-~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~ 162 (164)
+++|.++++. . |++++|.. +.++++||+..+. .+++.|++||||++|+|++.+++.+ +...++++++|+
T Consensus 72 ~~~~~~~~~~~~--~~~l~D~~~~~~~~~~gv~~~~------~~~~~~~~~iid~~G~I~~~~~~~~-~~~~~~~~~~~~ 142 (143)
T cd03014 72 QKRWCGAEGVDN--VTTLSDFRDHSFGKAYGVLIKD------LGLLARAVFVIDENGKVIYVELVPE-ITDEPDYEAALA 142 (143)
T ss_pred HHHHHHhcCCCC--ceEeecCcccHHHHHhCCeecc------CCccceEEEEEcCCCeEEEEEECCC-cccCCCHHHHhh
Confidence 9999999996 6 99999996 9999999997531 1345588999999999999999764 466788998875
No 17
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.97 E-value=1.6e-29 Score=189.02 Aligned_cols=142 Identities=22% Similarity=0.389 Sum_probs=118.4
Q ss_pred CCCCCCCeeeeeecCCCceeeeehhhhcCC-CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHH
Q 045485 6 VGDKLPDATLSYFDSAGELQTITVSDLTSN-KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFV 84 (164)
Q Consensus 6 ~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g-~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~ 84 (164)
+|+++|+|++ .+++|. ++|+++ +| +++||+|||++|||.|..+ ++.|++++++|+++|+++++ ||.|+.+.
T Consensus 1 vG~~aP~F~~--~~~~g~---~~l~d~-~g~k~vvlf~~pa~~cp~C~~e-l~~l~~~~~~f~~~gv~vig-vS~D~~~~ 72 (203)
T cd03016 1 LGDTAPNFEA--DTTHGP---IKFHDY-LGDSWGILFSHPADFTPVCTTE-LGAFAKLAPEFKKRNVKLIG-LSVDSVES 72 (203)
T ss_pred CcCCCCCeEE--ecCCCc---EeHHHH-cCCCEEEEEEecCCCCCcCHHH-HHHHHHHHHHHHHcCCEEEE-EECCCHHH
Confidence 5899999995 466774 899999 67 7888999999999999998 99999999999999999999 99999999
Q ss_pred HHHHHHH------hCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHH
Q 045485 85 MKAWKEN------LGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAE 158 (164)
Q Consensus 85 ~~~~~~~------~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~ 158 (164)
+++|+++ .+++ ||+++|+++.++++||+..... +.+.+.|++||||++|+|++.+.++.. ...+++
T Consensus 73 ~~~~~~~i~~~~~~~~~--fpil~D~~~~ia~~yg~~~~~~----~~~~~~r~~fiID~~G~I~~~~~~~~~--~gr~~~ 144 (203)
T cd03016 73 HIKWIEDIEEYTGVEIP--FPIIADPDREVAKLLGMIDPDA----GSTLTVRAVFIIDPDKKIRLILYYPAT--TGRNFD 144 (203)
T ss_pred HHHHHhhHHHhcCCCCc--eeEEECchHHHHHHcCCccccC----CCCceeeEEEEECCCCeEEEEEecCCC--CCCCHH
Confidence 9998876 5778 9999999999999999974310 113455889999999999999997532 234566
Q ss_pred HHHhh
Q 045485 159 DMLKA 163 (164)
Q Consensus 159 ~~l~~ 163 (164)
++++.
T Consensus 145 ell~~ 149 (203)
T cd03016 145 EILRV 149 (203)
T ss_pred HHHHH
Confidence 66654
No 18
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.7e-29 Score=180.60 Aligned_cols=151 Identities=25% Similarity=0.435 Sum_probs=125.5
Q ss_pred CCCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 2 AAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 2 ~~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
|++.+|+++|+|+.+....++...+++++++ .|||+||+|||+.+.++|..| +..|++++++|+++|++||+ +|.|+
T Consensus 1 ~~~lIg~~aP~F~~~a~~~~~~~~~i~l~d~-~gkw~VLff~P~DFTfVCpTE-i~af~~~y~eF~~~g~eVig-vS~Ds 77 (194)
T COG0450 1 MMSLIGKKAPDFTANAVLGGEIFEEITLSDY-YGKWVVLFFYPADFTFVCPTE-IIAFAKRYEEFQKRGVEVIG-VSTDS 77 (194)
T ss_pred CccccCCcCCCcEEEEEecCceeeEEechhh-cCcEEEEEeccCCCCccCcch-HHHHHhhhHHHHHcCCEEEE-EecCc
Confidence 5678999999999764432333335999999 579999999999999999997 99999999999999999999 99999
Q ss_pred HHHHHHHHHH----hCCCC-ceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecC
Q 045485 82 AFVMKAWKEN----LGIND-EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSG 156 (164)
Q Consensus 82 ~~~~~~~~~~----~~~~~-~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~ 156 (164)
.+.+.+|... .++.. +||+++|++++++++||+..+.. |...|++||||++|+|+++.+++. ....+
T Consensus 78 ~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~------g~a~R~~FIIDp~g~ir~~~v~~~--~iGRn 149 (194)
T COG0450 78 VFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEE------GLALRGTFIIDPDGVIRHILVNPL--TIGRN 149 (194)
T ss_pred HHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCC------CcceeEEEEECCCCeEEEEEEecC--CCCcC
Confidence 9999999877 45321 39999999999999999986421 556799999999999999999864 23456
Q ss_pred HHHHHhh
Q 045485 157 AEDMLKA 163 (164)
Q Consensus 157 ~~~~l~~ 163 (164)
++++|+.
T Consensus 150 ~dEilR~ 156 (194)
T COG0450 150 VDEILRV 156 (194)
T ss_pred HHHHHHH
Confidence 6666653
No 19
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.96 E-value=2.6e-29 Score=173.21 Aligned_cols=124 Identities=35% Similarity=0.558 Sum_probs=112.0
Q ss_pred CCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHH
Q 045485 6 VGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVM 85 (164)
Q Consensus 6 ~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~ 85 (164)
+|+++|+|++ .+.+|+. ++|+++ +|+++||+||+++|||.|..+ ++.+++++++++++|+.+++ |+.|+++++
T Consensus 1 vG~~~P~f~l--~~~~g~~--~~l~~l-~gk~~vl~f~~~~~c~~c~~~-l~~l~~~~~~~~~~~~~vi~-is~d~~~~~ 73 (124)
T PF00578_consen 1 VGDKAPDFTL--TDSDGKT--VSLSDL-KGKPVVLFFWPTAWCPFCQAE-LPELNELYKKYKDKGVQVIG-ISTDDPEEI 73 (124)
T ss_dssp TTSBGGCEEE--ETTTSEE--EEGGGG-TTSEEEEEEESTTTSHHHHHH-HHHHHHHHHHHHTTTEEEEE-EESSSHHHH
T ss_pred CcCCCCCcEe--ECCCCCE--EEHHHH-CCCcEEEEEeCccCccccccc-hhHHHHHhhhhccceEEeee-cccccccch
Confidence 6999999995 5888887 999999 799999999977799999997 99999999999999999999 999999999
Q ss_pred HHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEE
Q 045485 86 KAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVL 144 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~ 144 (164)
++|.++++++ |++++|+++.+++.||+.... . ....|++||||++|+|+|+
T Consensus 74 ~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~-----~-~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 74 KQFLEEYGLP--FPVLSDPDGELAKAFGIEDEK-----D-TLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHTCS--SEEEEETTSHHHHHTTCEETT-----T-SEESEEEEEEETTSBEEEE
T ss_pred hhhhhhhccc--cccccCcchHHHHHcCCcccc-----C-CceEeEEEEECCCCEEEeC
Confidence 9999999999 999999999999999997531 0 2344889999999999985
No 20
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.96 E-value=6e-29 Score=185.46 Aligned_cols=145 Identities=16% Similarity=0.292 Sum_probs=120.8
Q ss_pred CCCCCCCCCeeeee--ecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 4 ISVGDKLPDATLSY--FDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 4 l~~G~~~P~f~l~~--~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
+.+|+++|+|+++. .+.+|+. ++|+++ +||++||+||+++|||.|..+ ++.|++++++|+++|+++|+ ||.|+
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~--v~l~d~-~Gk~~lL~F~p~~~~~~C~~e-~~~l~~~~~~f~~~g~~vv~-IS~d~ 80 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKK--ISLSSY-KGKWVVLFFYPLDFTFVCPTE-IIQFSDSVKRFNELNCEVLA-CSMDS 80 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcE--EeHHHH-CCCEEEEEEEcCCCCCcCHHH-HHHHHHHHHHHHHcCCEEEE-EeCCC
Confidence 68999999999642 1344555 999999 799999999999999999998 99999999999999999999 99999
Q ss_pred HHHHHHHHHHh-------CCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceee
Q 045485 82 AFVMKAWKENL-------GINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTF 154 (164)
Q Consensus 82 ~~~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~ 154 (164)
.+.+.+|..+. +++ ||+++|+++++++.||+.... . +++.|++||||++|+|++.++++.. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~--fpll~D~~~~ia~~ygv~~~~-----~-g~~~r~~fiID~~G~i~~~~~~~~~--~~ 150 (199)
T PTZ00253 81 EYAHLQWTLQERKKGGLGTMA--IPMLADKTKSIARSYGVLEEE-----Q-GVAYRGLFIIDPKGMLRQITVNDMP--VG 150 (199)
T ss_pred HHHHHHHHhChHhhCCccccc--cceEECcHhHHHHHcCCcccC-----C-CceEEEEEEECCCCEEEEEEecCCC--CC
Confidence 98888885421 356 999999999999999997531 1 4566899999999999999997542 44
Q ss_pred cCHHHHHhh
Q 045485 155 SGAEDMLKA 163 (164)
Q Consensus 155 ~~~~~~l~~ 163 (164)
++++++|+.
T Consensus 151 r~~~e~l~~ 159 (199)
T PTZ00253 151 RNVEEVLRL 159 (199)
T ss_pred CCHHHHHHH
Confidence 577777765
No 21
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.96 E-value=9.9e-29 Score=173.89 Aligned_cols=140 Identities=28% Similarity=0.370 Sum_probs=120.7
Q ss_pred CCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHH
Q 045485 8 DKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKA 87 (164)
Q Consensus 8 ~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~ 87 (164)
+++|+|+ +.+.+|+. ++++++ +||++||+||+++|||.|..+ ++.|++++++++++|+.+|+ |+.|+++.+++
T Consensus 1 ~~~p~f~--l~~~~g~~--~~l~~~-~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~~vv~-is~d~~~~~~~ 73 (140)
T cd03017 1 DKAPDFT--LPDQDGET--VSLSDL-RGKPVVLYFYPKDDTPGCTKE-ACDFRDLYEEFKALGAVVIG-VSPDSVESHAK 73 (140)
T ss_pred CCCCCcc--ccCCCCCE--EeHHHh-CCCcEEEEEeCCCCCCchHHH-HHHHHHHHHHHHHCCCEEEE-EcCCCHHHHHH
Confidence 4789999 46888987 999999 799999999988999999997 99999999999999999999 99999999999
Q ss_pred HHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHh
Q 045485 88 WKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLK 162 (164)
Q Consensus 88 ~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~ 162 (164)
|+++++++ |++++|+++.++++||+......+ .+.+.|++||||++|+|++.+.+ .....+++++|+
T Consensus 74 ~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~~~---~~~~~p~~~lid~~G~v~~~~~g---~~~~~~~~~~~~ 140 (140)
T cd03017 74 FAEKYGLP--FPLLSDPDGKLAKAYGVWGEKKKK---YMGIERSTFLIDPDGKIVKVWRK---VKPKGHAEEVLE 140 (140)
T ss_pred HHHHhCCC--ceEEECCccHHHHHhCCccccccc---cCCcceeEEEECCCCEEEEEEec---CCccchHHHHhC
Confidence 99999999 999999999999999997542111 12344789999999999999985 345777787764
No 22
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.95 E-value=2e-27 Score=167.16 Aligned_cols=138 Identities=33% Similarity=0.566 Sum_probs=117.6
Q ss_pred CCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHH
Q 045485 9 KLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAW 88 (164)
Q Consensus 9 ~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~ 88 (164)
.+|+|+ +.+.+|+. ++++++ +|+++||+||+++|||.|..+ ++.++++++++++.++.+++ |+.|+++.+++|
T Consensus 1 ~~p~f~--l~~~~g~~--~~l~~~-~gk~~ll~f~~~~~c~~C~~~-~~~l~~~~~~~~~~~~~~i~-is~d~~~~~~~~ 73 (140)
T cd02971 1 KAPDFT--LPATDGGE--VSLSDF-KGKWVVLFFYPKDFTPVCTTE-LCAFRDLAEEFAKGGAEVLG-VSVDSPFSHKAW 73 (140)
T ss_pred CCCCce--eccCCCcE--EehHHh-CCCeEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHH
Confidence 479998 56888887 999999 799999999999999999997 99999999999989999999 899999999999
Q ss_pred HHHh-CCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHH
Q 045485 89 KENL-GINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 160 (164)
Q Consensus 89 ~~~~-~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~ 160 (164)
++++ +.+ |++++|+++.++++||+...... +-+...|++||||++|+|++++.+.+. ....++.+
T Consensus 74 ~~~~~~~~--~~~l~D~~~~~~~~~g~~~~~~~---~~~~~~p~~~lid~~g~i~~~~~~~~~--~~~~~~~~ 139 (140)
T cd02971 74 AEKEGGLN--FPLLSDPDGEFAKAYGVLIEKSA---GGGLAARATFIIDPDGKIRYVEVEPLP--TGRNAEEL 139 (140)
T ss_pred HhcccCCC--ceEEECCChHHHHHcCCcccccc---ccCceeEEEEEECCCCcEEEEEecCCC--CCcChHhh
Confidence 9999 888 99999999999999999864211 112355789999999999999998653 44444443
No 23
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.95 E-value=7.3e-28 Score=170.77 Aligned_cols=131 Identities=20% Similarity=0.298 Sum_probs=111.2
Q ss_pred CCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHH
Q 045485 9 KLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAW 88 (164)
Q Consensus 9 ~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~ 88 (164)
.+|+|+ +.+.+|+. ++++++.+++++||+|||++|||+|+.+ ++.|++++++++++|+.+|+ |+.|+.+.+.+|
T Consensus 1 ~~p~f~--l~~~~g~~--~~l~~~~~~~~~vl~f~~~~~Cp~C~~~-~~~l~~~~~~~~~~~v~vv~-V~~~~~~~~~~~ 74 (149)
T cd02970 1 TAPDFE--LPDAGGET--VTLSALLGEGPVVVVFYRGFGCPFCREY-LRALSKLLPELDALGVELVA-VGPESPEKLEAF 74 (149)
T ss_pred CCCCcc--ccCCCCCE--EchHHHhcCCCEEEEEECCCCChhHHHH-HHHHHHHHHHHHhcCeEEEE-EeCCCHHHHHHH
Confidence 479998 45788987 9999985568899999999999999997 99999999999999999999 899999988899
Q ss_pred HHHhCCCCceEEEEeCcchHHHHhCCccccCC-----------------CCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 89 KENLGINDEVLLLSDGNGVFTKAIGCELDLSD-----------------KPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 89 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~-----------------~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
.++++++ |++++|+++.++++||+...... ...+-+...|++||||++|+|++.+++
T Consensus 75 ~~~~~~~--~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 75 DKGKFLP--FPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHhcCCC--CeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 9999999 99999999999999999643110 011112456889999999999999984
No 24
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.94 E-value=2.5e-26 Score=164.51 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=97.8
Q ss_pred CCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec--------CC
Q 045485 10 LPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV--------ND 81 (164)
Q Consensus 10 ~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~--------d~ 81 (164)
+|+|+ +.+.+|+. ++|+++ +||++||+|| ++||| |..+ +|.|++++++++++|+.+++ |+. ++
T Consensus 2 ~~~f~--l~d~~G~~--v~l~~~-~Gk~vvl~fw-atwC~-C~~e-~p~l~~l~~~~~~~~~~vv~-v~~~~~~~~~~~~ 72 (152)
T cd00340 2 IYDFS--VKDIDGEP--VSLSKY-KGKVLLIVNV-ASKCG-FTPQ-YEGLEALYEKYKDRGLVVLG-FPCNQFGGQEPGS 72 (152)
T ss_pred cceeE--EECCCCCE--EeHHHh-CCCEEEEEEE-cCCCC-chHH-HHHHHHHHHHhcCCCEEEEE-eccCccccCCCCC
Confidence 68998 56889987 999999 7998888887 99999 9997 99999999999999999999 664 45
Q ss_pred HHHHHHHHHH-hCCCCceEEEEeC--cch-HHHHhCCccc-cCCCC-CCCCcceeEEEEEecCCcEEEEEeec
Q 045485 82 AFVMKAWKEN-LGINDEVLLLSDG--NGV-FTKAIGCELD-LSDKP-MGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~l~D~--~~~-~~~~~gv~~~-~~~~~-~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
++.+++|+++ ++++ ||+++|. ++. .++.|+.... .+.-+ ... ...|++||||++|+|++.+.+.
T Consensus 73 ~~~~~~f~~~~~~~~--fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~ttflId~~G~i~~~~~G~ 142 (152)
T cd00340 73 NEEIKEFCETNYGVT--FPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDI-KWNFTKFLVDRDGEVVKRFAPT 142 (152)
T ss_pred HHHHHHHHHHhcCCC--ceeeeeEeccCCCCChHHHHHHhcCCCCCCCcc-ccccEEEEECCCCcEEEEECCC
Confidence 7899999987 8999 9999874 333 4566664211 00000 000 0124799999999999999963
No 25
>PLN02412 probable glutathione peroxidase
Probab=99.93 E-value=1.1e-25 Score=163.65 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=106.3
Q ss_pred CCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec------
Q 045485 6 VGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV------ 79 (164)
Q Consensus 6 ~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~------ 79 (164)
.-+.+|+|+ +.+.+|+. ++|+++ +||++||+|| ++|||.|..+ +|.|++++++|+++|+.|++ |+.
T Consensus 5 ~~~~~pdf~--l~d~~G~~--v~l~~~-~gk~vlv~f~-a~~C~~c~~e-~~~l~~l~~~~~~~g~~vvg-v~~~~~~~~ 76 (167)
T PLN02412 5 SPKSIYDFT--VKDIGGND--VSLNQY-KGKVLLIVNV-ASKCGLTDSN-YKELNVLYEKYKEQGFEILA-FPCNQFLGQ 76 (167)
T ss_pred cCCCCCceE--EECCCCCE--EeHHHh-CCCEEEEEEe-CCCCCChHHH-HHHHHHHHHHHhhCCcEEEE-ecccccccC
Confidence 447899999 46889987 999999 7998888888 9999999997 99999999999999999999 765
Q ss_pred --CCHHHHHH-HHHHhCCCCceEEEEe--Ccc-hHHHHhCCccccCCCCCCCCc-ceeEEEEEecCCcEEEEEeecCCce
Q 045485 80 --NDAFVMKA-WKENLGINDEVLLLSD--GNG-VFTKAIGCELDLSDKPMGLGV-RSRRYALLAENGVVKVLNLEEGGAF 152 (164)
Q Consensus 80 --d~~~~~~~-~~~~~~~~~~~~~l~D--~~~-~~~~~~gv~~~~~~~~~~~~~-~~p~~~lid~~G~I~~~~~~~~~~~ 152 (164)
++.+++.+ |+++++++ ||+++| .++ ..+..|++......+..+.++ ..|++||||++|+|++.+.+. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~---~ 151 (167)
T PLN02412 77 EPGSNEEIQQTVCTRFKAE--FPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPT---T 151 (167)
T ss_pred CCCCHHHHHHHHHHccCCC--CceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCC---C
Confidence 45556544 56889999 999984 553 667777643221000001011 136799999999999999864 3
Q ss_pred eecCHHHHHh
Q 045485 153 TFSGAEDMLK 162 (164)
Q Consensus 153 ~~~~~~~~l~ 162 (164)
+..+++..|+
T Consensus 152 ~~~~l~~~i~ 161 (167)
T PLN02412 152 SPLKIEKDIQ 161 (167)
T ss_pred CHHHHHHHHH
Confidence 3444444443
No 26
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.93 E-value=1.3e-25 Score=165.43 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=98.0
Q ss_pred CCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-----
Q 045485 6 VGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN----- 80 (164)
Q Consensus 6 ~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d----- 80 (164)
.+..+|+|+ +.+.+|+. ++|+++ +||++||+++|++|||+|..+ +|.|++++++++++|+.+|+ |+.|
T Consensus 16 ~~~~~p~f~--l~d~~G~~--vsLs~~-~Gk~vvlv~n~atwCp~C~~e-~p~l~~l~~~~~~~gv~vv~-vs~~~~~~~ 88 (183)
T PTZ00256 16 PTKSFFEFE--AIDIDGQL--VQLSKF-KGKKAIIVVNVACKCGLTSDH-YTQLVELYKQYKSQGLEILA-FPCNQFMEQ 88 (183)
T ss_pred CCCcccceE--eEcCCCCE--EeHHHh-CCCcEEEEEEECCCCCchHHH-HHHHHHHHHHHhhCCcEEEE-Eeccccccc
Confidence 356789998 45889987 999999 799766555459999999998 99999999999999999999 7753
Q ss_pred ---CHHHHHHHHH-HhCCCCceEEEEe--CcchH-HHHhCCccccCCC----CCC-CCcc-eeEEEEEecCCcEEEEEee
Q 045485 81 ---DAFVMKAWKE-NLGINDEVLLLSD--GNGVF-TKAIGCELDLSDK----PMG-LGVR-SRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 81 ---~~~~~~~~~~-~~~~~~~~~~l~D--~~~~~-~~~~gv~~~~~~~----~~~-~~~~-~p~~~lid~~G~I~~~~~~ 147 (164)
+.++..+|+. +++++ ||+++| .++.. ++.|+........ ..+ .++| ++++||||++|+|++.+.+
T Consensus 89 ~~~~~~~~~~f~~~~~~~~--fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g 166 (183)
T PTZ00256 89 EPWDEPEIKEYVQKKFNVD--FPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSP 166 (183)
T ss_pred CCCCHHHHHHHHHHhcCCC--CCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECC
Confidence 4577888875 78999 999976 44433 3344211110000 000 0344 2468999999999999986
Q ss_pred c
Q 045485 148 E 148 (164)
Q Consensus 148 ~ 148 (164)
.
T Consensus 167 ~ 167 (183)
T PTZ00256 167 K 167 (183)
T ss_pred C
Confidence 3
No 27
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.93 E-value=2.9e-25 Score=165.51 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=100.6
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec----
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV---- 79 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~---- 79 (164)
-..|..+|+|++ .+.+|+. ++|+++ +||++||+|| ++|||+|..+ +|.|++++++++++|+.||+ |+.
T Consensus 13 ~~~~~~~pdf~l--~d~~G~~--vsL~~~-kGkvvlv~fw-AswC~~C~~e-~p~L~~l~~~~~~~g~~vvg-v~~~~~~ 84 (199)
T PTZ00056 13 DELRKSIYDYTV--KTLEGTT--VPMSSL-KNKVLMITNS-ASKCGLTKKH-VDQMNRLHSVFNPLGLEILA-FPTSQFL 84 (199)
T ss_pred hhcCCCCCceEE--ECCCCCE--EeHHHh-CCCEEEEEEE-CCCCCChHHH-HHHHHHHHHHHhcCceEEEE-ecchhcc
Confidence 356789999994 6888987 999999 7997777776 9999999997 99999999999999999999 764
Q ss_pred ----CCHHHHHHHHHHhCCCCceEEEEeC--c----chHHHHhC----CccccCCCCCCCCcc-eeEEEEEecCCcEEEE
Q 045485 80 ----NDAFVMKAWKENLGINDEVLLLSDG--N----GVFTKAIG----CELDLSDKPMGLGVR-SRRYALLAENGVVKVL 144 (164)
Q Consensus 80 ----d~~~~~~~~~~~~~~~~~~~~l~D~--~----~~~~~~~g----v~~~~~~~~~~~~~~-~p~~~lid~~G~I~~~ 144 (164)
++++++++|+++++++ ||+++|. + ..+.+.+. .......... +++ .+++||||++|+|++.
T Consensus 85 ~~e~d~~e~~~~f~~~~~~~--fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~--~i~~~~~tflID~~G~iv~~ 160 (199)
T PTZ00056 85 NQEFPNTKDIRKFNDKNKIK--YNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLK--AIGWNFGKFLVNKSGNVVAY 160 (199)
T ss_pred CCCCCCHHHHHHHHHHcCCC--ceeeeeeeccCCccCHHHHHHHHhCcccccccccCC--ccCCCCEEEEECCCCcEEEE
Confidence 6789999999999999 9999873 2 22222221 1110000001 122 1469999999999998
Q ss_pred Eeec
Q 045485 145 NLEE 148 (164)
Q Consensus 145 ~~~~ 148 (164)
+.+.
T Consensus 161 ~~g~ 164 (199)
T PTZ00056 161 FSPR 164 (199)
T ss_pred eCCC
Confidence 8753
No 28
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.93 E-value=1.3e-25 Score=155.96 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=94.7
Q ss_pred eehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec------CCHHHHHHHHHHhCCCCceEE
Q 045485 27 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV------NDAFVMKAWKENLGINDEVLL 100 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~------d~~~~~~~~~~~~~~~~~~~~ 100 (164)
++|+++ +||++||+|| ++|||+|..+ +|.|++++++++++++.+++ |+. ++++++++|+++++++ |++
T Consensus 16 v~l~~~-~gk~vvl~F~-a~~C~~C~~~-~p~l~~l~~~~~~~~~~vi~-i~~~~~~~~~~~~~~~~~~~~~~~~--~p~ 89 (126)
T cd03012 16 LSLAQL-RGKVVLLDFW-TYCCINCLHT-LPYLTDLEQKYKDDGLVVIG-VHSPEFAFERDLANVKSAVLRYGIT--YPV 89 (126)
T ss_pred cCHHHh-CCCEEEEEEE-CCCCccHHHH-HHHHHHHHHHcCcCCeEEEE-eccCccccccCHHHHHHHHHHcCCC--CCE
Confidence 999999 7998888887 9999999997 99999999999999999999 654 4688999999999999 999
Q ss_pred EEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeec
Q 045485 101 LSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 101 l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
++|+++.+++.|++. ++ |++||||++|+|++.+.++
T Consensus 90 ~~D~~~~~~~~~~v~----------~~--P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 ANDNDYATWRAYGNQ----------YW--PALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred EECCchHHHHHhCCC----------cC--CeEEEECCCCcEEEEEecC
Confidence 999999999999986 34 6699999999999999875
No 29
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.93 E-value=1.7e-25 Score=169.93 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=109.2
Q ss_pred CCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec-----
Q 045485 5 SVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV----- 79 (164)
Q Consensus 5 ~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~----- 79 (164)
..|+.+|+|+ +.+.+|+. ++|+++ +||++||+|| ++|||+|..+ +|.|++++++++++|+++|+ |+.
T Consensus 74 ~~g~~aPdF~--l~d~~G~~--vsLsd~-kGK~vvl~Fw-AswCp~c~~e-~p~L~~L~~~~~~~Gv~VIg-V~~d~~~~ 145 (236)
T PLN02399 74 ATEKSVHDFT--VKDIDGKD--VALSKF-KGKVLLIVNV-ASKCGLTSSN-YSELSHLYEKYKTQGFEILA-FPCNQFGG 145 (236)
T ss_pred hcCCCCCceE--EECCCCCE--EeHHHh-CCCeEEEEEE-cCCCcchHHH-HHHHHHHHHHHhcCCcEEEE-Eecccccc
Confidence 4789999999 56889987 999999 7998888888 9999999998 99999999999999999999 764
Q ss_pred ---CCHHHHHHHH-HHhCCCCceEEEEe--Ccc-hHHHHhCCccccCCCCCCCCc-ceeEEEEEecCCcEEEEEeecCCc
Q 045485 80 ---NDAFVMKAWK-ENLGINDEVLLLSD--GNG-VFTKAIGCELDLSDKPMGLGV-RSRRYALLAENGVVKVLNLEEGGA 151 (164)
Q Consensus 80 ---d~~~~~~~~~-~~~~~~~~~~~l~D--~~~-~~~~~~gv~~~~~~~~~~~~~-~~p~~~lid~~G~I~~~~~~~~~~ 151 (164)
++.+++++|+ ++++++ ||++.| .++ ..+..|++......+..+-.+ ..|++||||++|+|++.+.+.
T Consensus 146 ~e~~s~~ei~~f~~~~~g~~--fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~--- 220 (236)
T PLN02399 146 QEPGSNPEIKQFACTRFKAE--FPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT--- 220 (236)
T ss_pred cCCCCHHHHHHHHHHhcCCC--CccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC---
Confidence 4678899997 688999 999964 444 455555432100000000001 126699999999999999853
Q ss_pred eeecCHHHHHhh
Q 045485 152 FTFSGAEDMLKA 163 (164)
Q Consensus 152 ~~~~~~~~~l~~ 163 (164)
...+++++.|+.
T Consensus 221 ~~~~~le~~I~~ 232 (236)
T PLN02399 221 TSPFQIEKDIQK 232 (236)
T ss_pred CCHHHHHHHHHH
Confidence 344455665554
No 30
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.93 E-value=4.8e-25 Score=160.55 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=105.7
Q ss_pred CCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC------
Q 045485 7 GDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN------ 80 (164)
Q Consensus 7 G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d------ 80 (164)
|+.+|+|+ +.+.+|+. ++|+++.+++++||+|| ++|||.|..+ ++.|++++++++++++.+++ |+.|
T Consensus 1 g~~~p~f~--l~~~~g~~--v~l~~~~~~k~~ll~f~-~t~Cp~c~~~-~~~l~~l~~~~~~~~v~~v~-is~d~~~~~~ 73 (171)
T cd02969 1 GSPAPDFS--LPDTDGKT--YSLADFADGKALVVMFI-CNHCPYVKAI-EDRLNRLAKEYGAKGVAVVA-INSNDIEAYP 73 (171)
T ss_pred CCcCCCcc--ccCCCCCE--EeHHHHhCCCEEEEEEE-CCCCccHHHH-HHHHHHHHHHHhhCCeEEEE-EecCcccccc
Confidence 68899999 46778887 99999855777777777 8999999997 99999999999989999999 8875
Q ss_pred --CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 81 --DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
+++++++|+++++++ |++++|+++.+++.||+.. . |++||||++|+|++.+..
T Consensus 74 ~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~v~~----------~--P~~~lid~~G~v~~~~~~ 128 (171)
T cd02969 74 EDSPENMKAKAKEHGYP--FPYLLDETQEVAKAYGAAC----------T--PDFFLFDPDGKLVYRGRI 128 (171)
T ss_pred ccCHHHHHHHHHHCCCC--ceEEECCchHHHHHcCCCc----------C--CcEEEECCCCeEEEeecc
Confidence 478999999999999 9999999999999999963 2 669999999999988754
No 31
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.93 E-value=2.7e-25 Score=163.97 Aligned_cols=132 Identities=21% Similarity=0.352 Sum_probs=105.3
Q ss_pred CCCCCCCCCeeeeeecCCC--ceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec-C
Q 045485 4 ISVGDKLPDATLSYFDSAG--ELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV-N 80 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g--~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~-d 80 (164)
..+|+++|+|++ .+.+| +. ++++++.+||++||+|| ++|||+|+.+ +|.++++. ++|+.+++ |+. |
T Consensus 39 ~~~g~~~p~f~l--~~~~g~g~~--~~~~~~~~gk~vvv~Fw-atwC~~C~~e-~p~l~~l~----~~~~~vi~-v~~~~ 107 (185)
T PRK15412 39 ALIGKPVPKFRL--ESLENPGQF--YQADVLTQGKPVLLNVW-ATWCPTCRAE-HQYLNQLS----AQGIRVVG-MNYKD 107 (185)
T ss_pred hhcCCCCCCcCC--ccCCCCCcc--ccHHHhcCCCEEEEEEE-CCCCHHHHHH-HHHHHHHH----HcCCEEEE-EECCC
Confidence 457999999995 45564 54 67766646888888888 9999999998 99997764 46899999 775 5
Q ss_pred CHHHHHHHHHHhCCCCceE-EEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHH
Q 045485 81 DAFVMKAWKENLGINDEVL-LLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAED 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~ 159 (164)
+++++++|+++++++ |+ ++.|+++.+.++||+. ++ |++|+||++|+|++.+.+. .+.+++++
T Consensus 108 ~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~----------~~--P~t~vid~~G~i~~~~~G~---~~~~~l~~ 170 (185)
T PRK15412 108 DRQKAISWLKELGNP--YALSLFDGDGMLGLDLGVY----------GA--PETFLIDGNGIIRYRHAGD---LNPRVWES 170 (185)
T ss_pred CHHHHHHHHHHcCCC--CceEEEcCCccHHHhcCCC----------cC--CeEEEECCCceEEEEEecC---CCHHHHHH
Confidence 778899999999999 87 4889999999999987 34 5699999999999999964 34445555
Q ss_pred HHhh
Q 045485 160 MLKA 163 (164)
Q Consensus 160 ~l~~ 163 (164)
.++.
T Consensus 171 ~i~~ 174 (185)
T PRK15412 171 EIKP 174 (185)
T ss_pred HHHH
Confidence 5543
No 32
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.92 E-value=1.9e-24 Score=157.10 Aligned_cols=136 Identities=24% Similarity=0.382 Sum_probs=116.7
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-C
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN-D 81 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d-~ 81 (164)
.+.+|+++|+|+ +.+.+|+. ++++++ +|++++|+|| ++|||.|+.+ ++.++++++++.++++.+++ |+.| +
T Consensus 34 ~~~~g~~~p~~~--~~~~~g~~--~~l~~~-~~k~~~l~f~-a~~C~~C~~~-~~~l~~~~~~~~~~~~~vi~-i~~d~~ 105 (173)
T PRK03147 34 KVQVGKEAPNFV--LTDLEGKK--IELKDL-KGKGVFLNFW-GTWCKPCEKE-MPYMNELYPKYKEKGVEIIA-VNVDET 105 (173)
T ss_pred ccCCCCCCCCcE--eecCCCCE--EeHHHc-CCCEEEEEEE-CCcCHHHHHH-HHHHHHHHHHhhcCCeEEEE-EEcCCC
Confidence 477899999999 45788987 999999 7898888888 9999999997 99999999999988899999 7765 5
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHH
Q 045485 82 AFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDML 161 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l 161 (164)
.+.+++|+++++++ |+++.|.++.+.+.||+. ++ |++|+||++|+|++.+.+. ...+++++.|
T Consensus 106 ~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~----------~~--P~~~lid~~g~i~~~~~g~---~~~~~l~~~l 168 (173)
T PRK03147 106 ELAVKNFVNRYGLT--FPVAIDKGRQVIDAYGVG----------PL--PTTFLIDKDGKVVKVITGE---MTEEQLEEYL 168 (173)
T ss_pred HHHHHHHHHHhCCC--ceEEECCcchHHHHcCCC----------Cc--CeEEEECCCCcEEEEEeCC---CCHHHHHHHH
Confidence 67889999999999 999999999999999996 33 6699999999999988753 3345566666
Q ss_pred hh
Q 045485 162 KA 163 (164)
Q Consensus 162 ~~ 163 (164)
+.
T Consensus 169 ~~ 170 (173)
T PRK03147 169 EK 170 (173)
T ss_pred HH
Confidence 54
No 33
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.92 E-value=1.3e-24 Score=160.90 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=106.9
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehh--hhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVS--DLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~--d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
.+.+|+++|+|+ +.|.+|+. ++++ ++ +||++||+|| ++|||+|+.+ +|.+++++++ .++.+++ |+.+
T Consensus 45 ~~~vG~~aP~f~--l~d~~G~~--v~l~~~~~-~gk~vvl~F~-atwCp~C~~~-lp~l~~~~~~---~~~~vv~-Is~~ 113 (189)
T TIGR02661 45 GPDVGDAAPIFN--LPDFDGEP--VRIGGSIA-PGRPTLLMFT-APSCPVCDKL-FPIIKSIARA---EETDVVM-ISDG 113 (189)
T ss_pred CCCCCCcCCCcE--ecCCCCCE--Eeccchhc-CCCEEEEEEE-CCCChhHHHH-HHHHHHHHHh---cCCcEEE-EeCC
Confidence 578999999999 56888987 8884 56 7898888887 9999999998 9999998653 4788899 8899
Q ss_pred CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHH
Q 045485 81 DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDM 160 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~ 160 (164)
+++++++|+++++++ ++.+. .++++.+.|++. ++ |++|+||++|+|++.... ...++++++
T Consensus 114 ~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~y~v~----------~~--P~~~lID~~G~I~~~g~~----~~~~~le~l 174 (189)
T TIGR02661 114 TPAEHRRFLKDHELG--GERYV-VSAEIGMAFQVG----------KI--PYGVLLDQDGKIRAKGLT----NTREHLESL 174 (189)
T ss_pred CHHHHHHHHHhcCCC--cceee-chhHHHHhccCC----------cc--ceEEEECCCCeEEEccCC----CCHHHHHHH
Confidence 999999999999998 76544 568899999986 34 569999999999986331 235678888
Q ss_pred Hhh
Q 045485 161 LKA 163 (164)
Q Consensus 161 l~~ 163 (164)
|++
T Consensus 175 l~~ 177 (189)
T TIGR02661 175 LEA 177 (189)
T ss_pred HHH
Confidence 775
No 34
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.92 E-value=1.2e-24 Score=155.89 Aligned_cols=132 Identities=12% Similarity=0.103 Sum_probs=100.9
Q ss_pred CeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec--------CCHH
Q 045485 12 DATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV--------NDAF 83 (164)
Q Consensus 12 ~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~--------d~~~ 83 (164)
+|+ +.+.+|+. ++|+++ +||++||+|| ++|||+|..+ +|.+++++++++++|+.+++ |+. |+++
T Consensus 4 ~f~--l~~~~G~~--~~l~~~-~Gk~vvv~~~-as~C~~c~~~-~~~l~~l~~~~~~~~~~v~~-i~~~~~~~~~~d~~~ 75 (153)
T TIGR02540 4 SFE--VKDARGRT--VSLEKY-RGKVSLVVNV-ASECGFTDQN-YRALQELHRELGPSHFNVLA-FPCNQFGESEPDSSK 75 (153)
T ss_pred cce--eECCCCCE--ecHHHh-CCCEEEEEEe-CCCCCchhhh-HHHHHHHHHHHhhCCeEEEE-EeccccccCCCCCHH
Confidence 555 56889987 999999 7998888877 9999999997 99999999999999999999 663 6789
Q ss_pred HHHHHHHH-hCCCCceEEEEeC-----cchHHHHhCCccccCCCCCCCCcc--eeEEEEEecCCcEEEEEeecCCceeec
Q 045485 84 VMKAWKEN-LGINDEVLLLSDG-----NGVFTKAIGCELDLSDKPMGLGVR--SRRYALLAENGVVKVLNLEEGGAFTFS 155 (164)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~l~D~-----~~~~~~~~gv~~~~~~~~~~~~~~--~p~~~lid~~G~I~~~~~~~~~~~~~~ 155 (164)
.+++|+++ ++++ ||+++|. +...+..|.+... + ++| .+++||||++|+|++.+.+. .+.+
T Consensus 76 ~~~~f~~~~~~~~--fp~~~d~~~~~~~~~~~~~~~~~~~------~-~~p~~~~~tflID~~G~v~~~~~g~---~~~~ 143 (153)
T TIGR02540 76 EIESFARRNYGVT--FPMFSKIKILGSEAEPAFRFLVDSS------K-KEPRWNFWKYLVNPEGQVVKFWRPE---EPVE 143 (153)
T ss_pred HHHHHHHHhcCCC--CCccceEecCCCCCCcHHHHHHhcC------C-CCCCCccEEEEEcCCCcEEEEECCC---CCHH
Confidence 99999986 8999 9999872 2233333433211 0 111 24599999999999999864 3344
Q ss_pred CHHHHHhh
Q 045485 156 GAEDMLKA 163 (164)
Q Consensus 156 ~~~~~l~~ 163 (164)
.++..|+.
T Consensus 144 ~l~~~i~~ 151 (153)
T TIGR02540 144 EIRPEITA 151 (153)
T ss_pred HHHHHHHH
Confidence 55555554
No 35
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.91 E-value=1.9e-24 Score=157.88 Aligned_cols=133 Identities=20% Similarity=0.268 Sum_probs=105.1
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec-CCH
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV-NDA 82 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~-d~~ 82 (164)
..+|.++|+|++ .+.+|+...++++++.+|++++|+|| ++|||+|+.+ +|.++++. ++|+.+++ |+. ++.
T Consensus 34 ~~vG~~ap~f~l--~~~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~-~p~l~~l~----~~~~~vi~-V~~~~~~ 104 (173)
T TIGR00385 34 ALIGKPVPAFPL--AALREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAE-HPYLNELA----KDGLPIVG-VDYKDQS 104 (173)
T ss_pred hhcCCCCCCccc--cccCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHH-HHHHHHHH----HcCCEEEE-EECCCCh
Confidence 568999999995 56777643477778756888888887 9999999997 89887664 46899999 675 466
Q ss_pred HHHHHHHHHhCCCCceE-EEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHH
Q 045485 83 FVMKAWKENLGINDEVL-LLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDML 161 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l 161 (164)
+..++|+++++++ |+ ++.|+++.++++|++. ++ |++|+||++|+|++.+.+. ...++.++.|
T Consensus 105 ~~~~~~~~~~~~~--f~~v~~D~~~~~~~~~~v~----------~~--P~~~~id~~G~i~~~~~G~---~~~~~l~~~l 167 (173)
T TIGR00385 105 QNALKFLKELGNP--YQAILIDPNGKLGLDLGVY----------GA--PETFLVDGNGVILYRHAGP---LNNEVWTEGF 167 (173)
T ss_pred HHHHHHHHHcCCC--CceEEECCCCchHHhcCCe----------eC--CeEEEEcCCceEEEEEecc---CCHHHHHHHH
Confidence 7788999999999 87 6789999999999986 34 5699999999999999963 3344445544
Q ss_pred h
Q 045485 162 K 162 (164)
Q Consensus 162 ~ 162 (164)
+
T Consensus 168 ~ 168 (173)
T TIGR00385 168 L 168 (173)
T ss_pred H
Confidence 4
No 36
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.90 E-value=3.5e-23 Score=145.84 Aligned_cols=127 Identities=24% Similarity=0.318 Sum_probs=103.7
Q ss_pred CCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcC-CCcCchhhHHHhHHHHHhCC---CcEEEEEec----C
Q 045485 9 KLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPT-CSQKHLPGFVEKSAELKSKG---VDIVACISV----N 80 (164)
Q Consensus 9 ~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~-C~~~~l~~l~~~~~~~~~~~---v~vi~~is~----d 80 (164)
.+|+|+ +.+.+|+. ++++++ +|+++||+|| ++||+. |..+ ++.++++++++++++ +.+++ |+. |
T Consensus 1 ~~p~f~--l~~~~g~~--~~l~~~-~gk~~vl~f~-~~~C~~~C~~~-l~~l~~~~~~~~~~~~~~v~~v~-vs~d~~~d 72 (142)
T cd02968 1 IGPDFT--LTDQDGRP--VTLSDL-KGKPVLVYFG-YTHCPDVCPTT-LANLAQALKQLGADGGDDVQVVF-ISVDPERD 72 (142)
T ss_pred CCCceE--EEcCCCCE--EchHHh-CCCEEEEEEE-cCCCcccCHHH-HHHHHHHHHHhhHhhcCceEEEE-EEECCCCC
Confidence 479998 46788987 999999 7998888888 899997 9997 999999999999875 99999 776 4
Q ss_pred CHHHHHHHHHHhCCCCceEEEEeCc---chHHHHhCCccccCCC---CCCCCcceeEEEEEecCCcEEEEEe
Q 045485 81 DAFVMKAWKENLGINDEVLLLSDGN---GVFTKAIGCELDLSDK---PMGLGVRSRRYALLAENGVVKVLNL 146 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~~---~~~~~~~~p~~~lid~~G~I~~~~~ 146 (164)
+++.+++|+++++.+ |+++.|++ ..++++||+....... ..++ .+.|.+||||++|+|++++.
T Consensus 73 ~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 73 TPEVLKAYAKAFGPG--WIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLV-DHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred CHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHhcEEEEecCCCCCceeE-eccceEEEECCCCCEEEeec
Confidence 578999999999988 99999975 7899999987542100 0011 13477999999999999874
No 37
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7e-23 Score=144.79 Aligned_cols=132 Identities=30% Similarity=0.538 Sum_probs=118.0
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA 82 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~ 82 (164)
.+.+|+.+|||+ +.|.||+. ++|.++.+.++||++|||+.-.|.|.++ .+.|++.+++|+..+.+|+| +|.|+.
T Consensus 62 ~v~~Gd~iPD~t--L~dedg~s--isLkkit~nk~vV~f~YP~asTPGCTkQ-aCgFRDnY~k~kka~aeV~G-lS~D~s 135 (211)
T KOG0855|consen 62 KVNKGDAIPDFT--LKDEDGKS--ISLKKITGNKPVVLFFYPAASTPGCTKQ-ACGFRDNYEKFKKAGAEVIG-LSGDDS 135 (211)
T ss_pred eeecCCcCCCcc--cccCCCCe--eeeeeecCCCcEEEEEeccCCCCCcccc-cccccccHHHHhhcCceEEe-eccCch
Confidence 477999999999 67999998 9999995445999999999999999999 89999999999999999999 999999
Q ss_pred HHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 83 FVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
..+++|..+++++ |.+|+|+.+++.+.||+... +.+ |.+-|..||++++|....+...
T Consensus 136 ~sqKaF~sKqnlP--YhLLSDpk~e~ik~lGa~k~----p~g-g~~~Rsh~if~kg~~k~~ik~~ 193 (211)
T KOG0855|consen 136 ASQKAFASKQNLP--YHLLSDPKNEVIKDLGAPKD----PFG-GLPGRSHYIFDKGGVKQLIKNN 193 (211)
T ss_pred HHHHHhhhhccCC--eeeecCcchhHHHHhCCCCC----CCC-CcccceEEEEecCCeEEEEEec
Confidence 9999999999999 99999999999999999743 444 6777999999999877666554
No 38
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.90 E-value=3.5e-23 Score=143.58 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=98.7
Q ss_pred CCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEe-cCCHHHHHH
Q 045485 9 KLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACIS-VNDAFVMKA 87 (164)
Q Consensus 9 ~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is-~d~~~~~~~ 87 (164)
++|+|++ .+.+|+..+++++++ +|+++||+|| ++|||.|..+ +|.++++.+++ ++.+|+ |+ .++.+.+++
T Consensus 2 ~~p~f~~--~~~~g~~~~~~~~~~-~gk~vvv~F~-a~~C~~C~~~-~~~l~~l~~~~---~~~vv~-v~~~~~~~~~~~ 72 (127)
T cd03010 2 PAPAFSL--PALPGPDKTLTSADL-KGKPYLLNVW-ASWCAPCREE-HPVLMALARQG---RVPIYG-INYKDNPENALA 72 (127)
T ss_pred CCCCccc--ccccCCCccccHHHc-CCCEEEEEEE-cCcCHHHHHH-HHHHHHHHHhc---CcEEEE-EECCCCHHHHHH
Confidence 6899984 567773234999999 7999999998 9999999997 99999987654 599999 66 468899999
Q ss_pred HHHHhCCCCce-EEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeec
Q 045485 88 WKENLGINDEV-LLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 88 ~~~~~~~~~~~-~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
|+++++++ | +++.|.++.+++.|++. ++ |++|+||++|+|++.+.+.
T Consensus 73 ~~~~~~~~--~~~~~~D~~~~~~~~~~v~----------~~--P~~~~ld~~G~v~~~~~G~ 120 (127)
T cd03010 73 WLARHGNP--YAAVGFDPDGRVGIDLGVY----------GV--PETFLIDGDGIIRYKHVGP 120 (127)
T ss_pred HHHhcCCC--CceEEECCcchHHHhcCCC----------CC--CeEEEECCCceEEEEEecc
Confidence 99999998 6 47789999999999997 33 6699999999999999863
No 39
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.89 E-value=1.9e-22 Score=137.21 Aligned_cols=112 Identities=16% Similarity=0.252 Sum_probs=92.9
Q ss_pred CCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHH
Q 045485 11 PDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKE 90 (164)
Q Consensus 11 P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~ 90 (164)
|+|+ +.+.+|+. ++|+++.+|+++||+|| ++|||.|+.+ +|.++++++++. .++.+++ ++.++.++.++|++
T Consensus 1 p~f~--l~~~~G~~--~~l~~~~~gk~vvl~F~-~~wC~~C~~~-~p~l~~~~~~~~-~~~~vi~-v~~~~~~~~~~~~~ 72 (114)
T cd02967 1 PTFD--LTTIDGAP--VRIGGISPGRPTLLFFL-SPTCPVCKKL-LPVIRSIARAEA-DWLDVVL-ASDGEKAEHQRFLK 72 (114)
T ss_pred CCce--eecCCCCE--EEcccccCCCeEEEEEE-CCCCcchHhH-hHHHHHHHHHhc-CCcEEEE-EeCCCHHHHHHHHH
Confidence 7888 45778987 99999932888888887 9999999997 999999888774 5688887 78788899999999
Q ss_pred HhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEE
Q 045485 91 NLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLN 145 (164)
Q Consensus 91 ~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~ 145 (164)
++++. .+|++.+ ..+.++|++. ++ |++||||++|+|++..
T Consensus 73 ~~~~~-~~p~~~~--~~~~~~~~~~----------~~--P~~~vid~~G~v~~~~ 112 (114)
T cd02967 73 KHGLE-AFPYVLS--AELGMAYQVS----------KL--PYAVLLDEAGVIAAKG 112 (114)
T ss_pred HhCCC-CCcEEec--HHHHhhcCCC----------Cc--CeEEEECCCCeEEecc
Confidence 99984 3788764 5688999986 33 6699999999998864
No 40
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.6e-22 Score=143.01 Aligned_cols=150 Identities=21% Similarity=0.391 Sum_probs=132.8
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA 82 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~ 82 (164)
.|..|+++|+|+. -++.|. +.+.|+.++.|.||+--|+.+.|+|..| +..+.+++.+|..|||..|+ +|.|+.
T Consensus 5 ~l~lgd~~PNfea--~Tt~g~---i~fhd~~gdSW~vLFSHPaDFTPVCTTE-lgr~Akl~pEF~KRnvKlia-lS~d~v 77 (224)
T KOG0854|consen 5 RLRLGDTVPNFEA--DTTVGK---IKFHDYLGDSWGVLFSHPADFTPVCTTE-LGRFAKLAPEFDKRNVKLIA-LSVDDV 77 (224)
T ss_pred cccccCcCCCccc--cccccc---eehhhhcccceEEEecCcccCCcchhHH-HHHHHhhChhhhhcCceEEE-eehhhH
Confidence 4678999999994 355666 9999998778999999999999999998 99999999999999999999 999999
Q ss_pred HHHHHHHHHh---------CCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCcee
Q 045485 83 FVMKAWKENL---------GINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFT 153 (164)
Q Consensus 83 ~~~~~~~~~~---------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~ 153 (164)
+.++.|.+.. .++ ||++.|++++++-.||+.+..+.+..+.+...|+.||||++-+|+..+.++. .+
T Consensus 78 esH~~Wi~DIks~~~~~~~~~~--yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~--tt 153 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNHSVP--YPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPS--TT 153 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCC--CCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEccc--cc
Confidence 9999998774 244 9999999999999999998877777777888899999999999999999975 56
Q ss_pred ecCHHHHHhh
Q 045485 154 FSGAEDMLKA 163 (164)
Q Consensus 154 ~~~~~~~l~~ 163 (164)
..+++++|+.
T Consensus 154 GRN~dEiLRv 163 (224)
T KOG0854|consen 154 GRNFDEILRV 163 (224)
T ss_pred CcCHHHHHHH
Confidence 7788888875
No 41
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.6e-21 Score=133.33 Aligned_cols=160 Identities=51% Similarity=0.857 Sum_probs=137.1
Q ss_pred CCCCCCCCCCCeeeeee----cCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEE
Q 045485 2 AAISVGDKLPDATLSYF----DSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACI 77 (164)
Q Consensus 2 ~~l~~G~~~P~f~l~~~----~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~i 77 (164)
|..++|+++|..++... +.+| +.+++..++.+||.++|+--|+.+.|.|...|+|.+.+++++|+++||.-|.|+
T Consensus 1 m~~~vg~klP~vtf~tr~~~~~~~~-~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cV 79 (165)
T COG0678 1 MTIMVGKKLPAVTFKTRVGDETADG-WVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCV 79 (165)
T ss_pred CccccCCcCCceEeEEeeccccCCC-cccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEE
Confidence 56789999999887533 2233 246888899899999999999999999999899999999999999999999999
Q ss_pred ecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeec-CCceeecC
Q 045485 78 SVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE-GGAFTFSG 156 (164)
Q Consensus 78 s~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~-~~~~~~~~ 156 (164)
|.|++..+++|.+..|...+..++.|.++++.+.+|+....++ .++|+.+-++-.+=+||+|.+.++.+ .++++..+
T Consensus 80 SVND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~--~g~G~RS~RYsmvV~nGvV~~~~iE~p~~~~~vS~ 157 (165)
T COG0678 80 SVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSD--LGFGVRSWRYSMVVENGVVEKLFIEPPGDPFTVSS 157 (165)
T ss_pred EeCcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeeccc--CCcceeeeeEEEEEeCCeEEEEEecCCCCceeecC
Confidence 9999999999999998755699999999999999999876443 34556666777888999999999985 44699999
Q ss_pred HHHHHhhC
Q 045485 157 AEDMLKAL 164 (164)
Q Consensus 157 ~~~~l~~l 164 (164)
++.+|+.|
T Consensus 158 a~~mL~~L 165 (165)
T COG0678 158 ADTMLAQL 165 (165)
T ss_pred HHHHHhcC
Confidence 99999876
No 42
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-21 Score=139.10 Aligned_cols=149 Identities=22% Similarity=0.382 Sum_probs=124.4
Q ss_pred CCCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 2 AAISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 2 ~~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
+.+.+..++|+|.-++. .||..++++|+++ +||++|++|++..+.-+|..| +-.|...+.+|++.|.+||+ +|.|+
T Consensus 2 ~~~~~~~p~p~fk~~aV-VdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPte-IiafSd~~~eF~~~n~eVig-~S~DS 77 (196)
T KOG0852|consen 2 MMEVVFKPAPDFKGTAV-VDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTE-IIAFSDRAPEFRKLNTEVLG-ISTDS 77 (196)
T ss_pred CccccCCCCCCcceeEE-EcCcceEEeehhh-cccEEEEEecCCceeeECchh-hhhhhhhHHHHHhcCCeEEE-Eeccc
Confidence 34567788899986543 4788888999999 799999999999999999997 99999999999999999999 99999
Q ss_pred HHHHHHHHHH----hCCCC-ceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecC
Q 045485 82 AFVMKAWKEN----LGIND-EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSG 156 (164)
Q Consensus 82 ~~~~~~~~~~----~~~~~-~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~ 156 (164)
.+.+.+|+.. -|+.. ++|+++|.+.+++++||+..+.+ |.+.|..||||++|.+|++.+++- -...+
T Consensus 78 ~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~------G~~lRglfIId~~gi~R~it~NDl--pvgRS 149 (196)
T KOG0852|consen 78 VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDE------GIALRGLFIIDPDGILRQITINDL--PVGRS 149 (196)
T ss_pred hhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCC------CcceeeeEEEccccceEEeeeccc--CCCcc
Confidence 9999999643 34432 49999999999999999997622 677799999999999999999753 22345
Q ss_pred HHHHHh
Q 045485 157 AEDMLK 162 (164)
Q Consensus 157 ~~~~l~ 162 (164)
++++|+
T Consensus 150 VdE~lR 155 (196)
T KOG0852|consen 150 VDETLR 155 (196)
T ss_pred HHHHHH
Confidence 555554
No 43
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.87 E-value=5.2e-22 Score=140.79 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=83.9
Q ss_pred eehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhC-------CCcEEEEEecC-CHHHHHHHHHHhCCCCce
Q 045485 27 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSK-------GVDIVACISVN-DAFVMKAWKENLGINDEV 98 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~-------~v~vi~~is~d-~~~~~~~~~~~~~~~~~~ 98 (164)
++|+++ +||+++|+|| |+|||+|+.+ +|.|++++++++++ ++.+|+ ||.| +.++.++|+++++++ |
T Consensus 18 ~~ls~~-kgk~vlL~Fw-AsWCppCr~e-~P~L~~ly~~~~~~~~~~~~~~~~vV~-Vs~D~~~~~~~~f~~~~~~~--~ 91 (146)
T cd03008 18 EIVARL-ENRVLLLFFG-AVVSPQCQLF-APKLKDFFVRLTDEFYVDRSAQLALVY-VSMDQSEQQQESFLKDMPKK--W 91 (146)
T ss_pred ccHHHh-CCCEEEEEEE-CCCChhHHHH-HHHHHHHHHHHHhhcccccCCCEEEEE-EECCCCHHHHHHHHHHCCCC--c
Confidence 688999 7999999998 9999999998 99999999988754 699999 7877 556689999999976 5
Q ss_pred ---EEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEE
Q 045485 99 ---LLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLN 145 (164)
Q Consensus 99 ---~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~ 145 (164)
++..+.++.+++.|++. ++ |++||||++|+|+...
T Consensus 92 ~~~p~~~~~~~~l~~~y~v~----------~i--Pt~vlId~~G~Vv~~~ 129 (146)
T cd03008 92 LFLPFEDEFRRELEAQFSVE----------EL--PTVVVLKPDGDVLAAN 129 (146)
T ss_pred eeecccchHHHHHHHHcCCC----------CC--CEEEEECCCCcEEeeC
Confidence 33333456899999996 45 5599999999998764
No 44
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-20 Score=130.55 Aligned_cols=161 Identities=63% Similarity=1.005 Sum_probs=135.7
Q ss_pred CCCCCCCCCCCeeee-eecCCCcee--eeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEe
Q 045485 2 AAISVGDKLPDATLS-YFDSAGELQ--TITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACIS 78 (164)
Q Consensus 2 ~~l~~G~~~P~f~l~-~~~~~g~~~--~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is 78 (164)
+++.+|+.+|+-+.. ..+...+.+ ++.++++.+||.++|+--|+.+.|.|...|+|.|.+..++|+++|+..|.|+|
T Consensus 7 a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 7 APIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred ccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 467899999993322 122222111 58999999999999999999999999888999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCC-ceeecCH
Q 045485 79 VNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGG-AFTFSGA 157 (164)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~-~~~~~~~ 157 (164)
.|+|+.+++|.+.++.+....+++|+++.+.+.+|+..+.++. ..++..+++-++=.||+|.+..+.+++ .++...+
T Consensus 87 VnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~--~~g~RS~R~a~vvengkV~~~nvE~~g~~~t~ssa 164 (171)
T KOG0541|consen 87 VNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDK--LLGVRSRRYALVVENGKVTVVNVEEGGTDFTVSSA 164 (171)
T ss_pred cCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeeccc--cCccccccEEEEEeCCeEEEEEeccCCCceEEecH
Confidence 9999999999999987656999999999999999998765544 336788889999999999999998754 4899999
Q ss_pred HHHHhhC
Q 045485 158 EDMLKAL 164 (164)
Q Consensus 158 ~~~l~~l 164 (164)
+.||.+|
T Consensus 165 ~~il~~l 171 (171)
T KOG0541|consen 165 EDILKQL 171 (171)
T ss_pred HHHhhcC
Confidence 9999875
No 45
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.86 E-value=7.5e-21 Score=127.74 Aligned_cols=110 Identities=26% Similarity=0.498 Sum_probs=97.8
Q ss_pred eecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC--HHHHHHHHHHhCC
Q 045485 17 YFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND--AFVMKAWKENLGI 94 (164)
Q Consensus 17 ~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~--~~~~~~~~~~~~~ 94 (164)
+.+.+|+. ++++++ ++++++|+|| ++||+.|... ++.+.++.+++.+.++.+++ |+.|+ ++.+++|.++++.
T Consensus 4 ~~~~~g~~--~~~~~~-~~k~~ll~f~-~~~C~~C~~~-~~~l~~~~~~~~~~~~~~~~-v~~d~~~~~~~~~~~~~~~~ 77 (116)
T cd02966 4 LPDLDGKP--VSLSDL-KGKVVLVNFW-ASWCPPCRAE-MPELEALAKEYKDDGVEVVG-VNVDDDDPAAVKAFLKKYGI 77 (116)
T ss_pred ccCCCCCE--eehHHc-CCCEEEEEee-cccChhHHHH-hHHHHHHHHHhCCCCeEEEE-EECCCCCHHHHHHHHHHcCC
Confidence 45678877 999999 6888888887 8999999997 99999999999878899999 88887 9999999999998
Q ss_pred CCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEe
Q 045485 95 NDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNL 146 (164)
Q Consensus 95 ~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~ 146 (164)
+ ++++.|.+..+.+.|++. ++ |+++|+|++|+|++.+.
T Consensus 78 ~--~~~~~~~~~~~~~~~~~~----------~~--P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 78 T--FPVLLDPDGELAKAYGVR----------GL--PTTFLIDRDGRIRARHV 115 (116)
T ss_pred C--cceEEcCcchHHHhcCcC----------cc--ceEEEECCCCcEEEEec
Confidence 8 999999999999999996 23 66999999999998765
No 46
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.86 E-value=3.8e-21 Score=159.97 Aligned_cols=133 Identities=13% Similarity=0.255 Sum_probs=107.8
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec----
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV---- 79 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~---- 79 (164)
+++++++|+|+ +.|.+|+. ++++ +||++||+|| ++|||+|+.+ +|.|++++++++..++.+|+ |+.
T Consensus 32 ~~~~~~lP~f~--l~D~dG~~--v~ls---kGKpVvV~FW-ATWCppCk~e-mP~L~eL~~e~k~~~v~VI~-Vs~~~~~ 101 (521)
T PRK14018 32 ATVPHTLSTLK--TADNRPAS--VYLK---KDKPTLIKFW-ASWCPLCLSE-LGETEKWAQDAKFSSANLIT-VASPGFL 101 (521)
T ss_pred ccccCCCCCeE--eecCCCce--eecc---CCCEEEEEEE-cCCCHHHHHH-HHHHHHHHHHhccCCeEEEE-Eeccccc
Confidence 45667999998 56888887 7775 5898888888 9999999998 99999999999877899999 654
Q ss_pred --CCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCH
Q 045485 80 --NDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGA 157 (164)
Q Consensus 80 --d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~ 157 (164)
.+.++.++|++..+++ .++++.|.++.++++|++. ++ |+++|||++|+|+....+. ...+.+
T Consensus 102 ~e~~~~~~~~~~~~~~y~-~~pV~~D~~~~lak~fgV~----------gi--PTt~IIDkdGkIV~~~~G~---~~~eeL 165 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDYP-KLPVLTDNGGTLAQSLNIS----------VY--PSWAIIGKDGDVQRIVKGS---ISEAQA 165 (521)
T ss_pred ccccHHHHHHHHHhCCCc-ccceeccccHHHHHHcCCC----------Cc--CeEEEEcCCCeEEEEEeCC---CCHHHH
Confidence 2356677888877763 4899999999999999997 44 5599999999999999964 335555
Q ss_pred HHHHh
Q 045485 158 EDMLK 162 (164)
Q Consensus 158 ~~~l~ 162 (164)
.++|+
T Consensus 166 ~a~Ie 170 (521)
T PRK14018 166 LALIR 170 (521)
T ss_pred HHHHH
Confidence 55554
No 47
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.85 E-value=5.6e-21 Score=140.00 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=94.3
Q ss_pred CCCCCCCCCCCeeeeee----cCCCce--eeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcE--
Q 045485 2 AAISVGDKLPDATLSYF----DSAGEL--QTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDI-- 73 (164)
Q Consensus 2 ~~l~~G~~~P~f~l~~~----~~~g~~--~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~v-- 73 (164)
+.+.+|+++|.....-. -.+|+. ++++.+++ .||..||+|| |+||++|+.+ .|.+.++ +++|+.+
T Consensus 21 ~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l-~GKV~lvn~~-Aswc~~c~~e-~P~l~~l----~~~~~~~~~ 93 (184)
T TIGR01626 21 HNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAEL-AGKVRVVHHI-AGRTSAKEXN-ASLIDAI----KAAKFPPVK 93 (184)
T ss_pred hhhhcCCcCCceEecCCceEEEcCCcccceeccHHHc-CCCEEEEEEE-ecCCChhhcc-chHHHHH----HHcCCCccc
Confidence 45889999999864200 011211 25888999 6998888888 9999999998 7888887 5578888
Q ss_pred ----EEEEecCC-HHH----HHHHHHHhCCCCceE---EEEeCcchHHHHhCCccccCCCCCCCCcceeEE-EEEecCCc
Q 045485 74 ----VACISVND-AFV----MKAWKENLGINDEVL---LLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRY-ALLAENGV 140 (164)
Q Consensus 74 ----i~~is~d~-~~~----~~~~~~~~~~~~~~~---~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~-~lid~~G~ 140 (164)
++ |+.|+ ... ++.|+++.+.. || ++.|.++.++.+||+. ++| ++ ||||++|+
T Consensus 94 y~~t~~-IN~dd~~~~~~~fVk~fie~~~~~--~P~~~vllD~~g~v~~~~gv~----------~~P--~T~fVIDk~Gk 158 (184)
T TIGR01626 94 YQTTTI-INADDAIVGTGMFVKSSAKKGKKE--NPWSQVVLDDKGAVKNAWQLN----------SED--SAIIVLDKTGK 158 (184)
T ss_pred ccceEE-EECccchhhHHHHHHHHHHHhccc--CCcceEEECCcchHHHhcCCC----------CCC--ceEEEECCCCc
Confidence 88 77764 444 34455666766 66 9999999999999997 444 36 99999999
Q ss_pred EEEEEeec
Q 045485 141 VKVLNLEE 148 (164)
Q Consensus 141 I~~~~~~~ 148 (164)
|++.+.|.
T Consensus 159 Vv~~~~G~ 166 (184)
T TIGR01626 159 VKFVKEGA 166 (184)
T ss_pred EEEEEeCC
Confidence 99999974
No 48
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.85 E-value=4.7e-21 Score=171.54 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=112.1
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeeh-hhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec---
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITV-SDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV--- 79 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l-~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~--- 79 (164)
...|+++|+|+..+.+.+|+. +++ +++ +||++||+|| ++||++|+.+ +|.|++++++++++++.+|+ |+.
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~--~~l~~~l-kGK~vll~FW-AsWC~pC~~e-~P~L~~l~~~y~~~~~~vvg-V~~~~~ 464 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAP--LQFRRDL-KGKVVILDFW-TYCCINCMHV-LPDLEFLEKKYKDQPFTVVG-VHSAKF 464 (1057)
T ss_pred cccCCcCCCCcccccccCCcc--ccchhhc-CCCEEEEEEE-CCcChhHHhH-hHHHHHHHHHcCCCCeEEEE-Eecccc
Confidence 457999999986544467876 888 578 7999988888 9999999998 99999999999988999999 652
Q ss_pred C---CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecC
Q 045485 80 N---DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSG 156 (164)
Q Consensus 80 d---~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~ 156 (164)
| +.++.++|+++++++ ||++.|.++.++++|++. ++ |+++|||++|+|+....+. ...+.
T Consensus 465 D~~~~~~~~~~~~~~~~i~--~pvv~D~~~~~~~~~~V~----------~i--Pt~ilid~~G~iv~~~~G~---~~~~~ 527 (1057)
T PLN02919 465 DNEKDLEAIRNAVLRYNIS--HPVVNDGDMYLWRELGVS----------SW--PTFAVVSPNGKLIAQLSGE---GHRKD 527 (1057)
T ss_pred cccccHHHHHHHHHHhCCC--ccEEECCchHHHHhcCCC----------cc--ceEEEECCCCeEEEEEecc---cCHHH
Confidence 2 467788999999999 999999999999999997 44 5599999999999988753 33445
Q ss_pred HHHHHh
Q 045485 157 AEDMLK 162 (164)
Q Consensus 157 ~~~~l~ 162 (164)
++++|+
T Consensus 528 l~~~l~ 533 (1057)
T PLN02919 528 LDDLVE 533 (1057)
T ss_pred HHHHHH
Confidence 555554
No 49
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.85 E-value=3.4e-20 Score=127.63 Aligned_cols=109 Identities=17% Similarity=0.323 Sum_probs=93.9
Q ss_pred CCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC--CHHHHHHH
Q 045485 11 PDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN--DAFVMKAW 88 (164)
Q Consensus 11 P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d--~~~~~~~~ 88 (164)
|+|+ +.+.+|+. ++++++ +|++++|+|| ++|||.|+.. +|.+++++++ +.+++ |+.+ +++++++|
T Consensus 1 p~f~--l~~~~g~~--~~~~~~-~~k~~vl~F~-~~~C~~C~~~-~~~l~~~~~~-----~~~i~-i~~~~~~~~~~~~~ 67 (123)
T cd03011 1 PLFT--ATTLDGEQ--FDLESL-SGKPVLVYFW-ATWCPVCRFT-SPTVNQLAAD-----YPVVS-VALRSGDDGAVARF 67 (123)
T ss_pred CCce--eecCCCCE--eeHHHh-CCCEEEEEEE-CCcChhhhhh-ChHHHHHHhh-----CCEEE-EEccCCCHHHHHHH
Confidence 7888 45788887 999999 7888888888 9999999997 9999998765 56777 6654 58999999
Q ss_pred HHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 89 KENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 89 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
.++++++ |+++.|.++.+.++|++. ++ |+++|||++| |++...+
T Consensus 68 ~~~~~~~--~~~~~d~~~~~~~~~~i~----------~~--P~~~vid~~g-i~~~~~g 111 (123)
T cd03011 68 MQKKGYG--FPVINDPDGVISARWGVS----------VT--PAIVIVDPGG-IVFVTTG 111 (123)
T ss_pred HHHcCCC--ccEEECCCcHHHHhCCCC----------cc--cEEEEEcCCC-eEEEEec
Confidence 9999999 999999999999999996 33 6699999999 9988885
No 50
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.6e-20 Score=127.26 Aligned_cols=133 Identities=30% Similarity=0.468 Sum_probs=114.1
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA 82 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~ 82 (164)
.+++|+++|+|++. +.+.+. ++|+++ +||..||..||+-..|+|..+ .+.|++...++ .++.|+. ||.|.|
T Consensus 17 ~~~vGd~ap~ftl~--~~dL~~--v~l~~~-~gk~~vi~v~PSiDT~VC~~q-vr~Fn~~aa~~--~~~~Vl~-IS~DLP 87 (158)
T COG2077 17 EPQVGDKAPDFTLV--GKDLND--VSLADF-AGKKKVISVFPSIDTPVCATQ-VRKFNEEAAKL--GNTVVLC-ISMDLP 87 (158)
T ss_pred CCccCCcCCceEEE--cCcccc--eecccc-CCceEEEEEccCCCCchhhHH-HHHHHHHHhcc--CCcEEEE-EeCCCh
Confidence 58999999999954 444444 999999 899999999999999999998 99999998887 4566666 999999
Q ss_pred HHHHHHHHHhCCCCceEEEEeC-cchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeec
Q 045485 83 FVMKAWKENLGINDEVLLLSDG-NGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~-~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
+++++|+..+|+. +...+||- +.++.++||+... +++.. |+..|+.|++|.+|+|.|....+
T Consensus 88 FAq~RfC~aeGi~-nv~~lSd~r~~~Fge~yGv~I~--egpL~-gLlARaV~V~De~g~V~y~elv~ 150 (158)
T COG2077 88 FAQKRFCGAEGIE-NVITLSDFRDRAFGENYGVLIN--EGPLA-GLLARAVFVLDENGKVTYSELVP 150 (158)
T ss_pred hHHhhhhhhcCcc-cceEhhhhhhhhhhHhhCEEec--ccccc-CeeeeEEEEEcCCCcEEEEEccc
Confidence 9999999999997 68889996 6789999999865 33444 67889999999999999999864
No 51
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.82 E-value=5.8e-20 Score=128.47 Aligned_cols=107 Identities=24% Similarity=0.359 Sum_probs=85.1
Q ss_pred CCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhC--CCcEEEEEecC-CHHHHHHHHHHhCCCCc
Q 045485 21 AGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSK--GVDIVACISVN-DAFVMKAWKENLGINDE 97 (164)
Q Consensus 21 ~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~--~v~vi~~is~d-~~~~~~~~~~~~~~~~~ 97 (164)
||+ ++++++++ +||++||+|| ++||++|+.+ +|.+++++++++++ ++.+++ |+.| +.+++++|+++++ +
T Consensus 5 ~~~-~~v~l~~~-~Gk~vll~F~-atwC~~C~~~-~p~l~~l~~~~~~~~~~v~vi~-Vs~d~~~~~~~~~~~~~~-~-- 76 (132)
T cd02964 5 DGE-GVVPVSAL-EGKTVGLYFS-ASWCPPCRAF-TPKLVEFYEKLKEEGKNFEIVF-VSRDRSEESFNEYFSEMP-P-- 76 (132)
T ss_pred cCC-ccccHHHh-CCCEEEEEEE-CCCCchHHHH-HHHHHHHHHHHhhcCCCeEEEE-EecCCCHHHHHHHHhcCC-C--
Confidence 444 34999999 7998888887 9999999998 99999999999875 788999 7776 5678899999997 4
Q ss_pred eEEE--Ee--CcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 98 VLLL--SD--GNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 98 ~~~l--~D--~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
+..+ .| ....+++.|++. ++ |+++|||++|+|++....
T Consensus 77 ~~~~~~~d~~~~~~~~~~~~v~----------~i--Pt~~lid~~G~iv~~~~~ 118 (132)
T cd02964 77 WLAVPFEDEELRELLEKQFKVE----------GI--PTLVVLKPDGDVVTTNAR 118 (132)
T ss_pred eEeeccCcHHHHHHHHHHcCCC----------CC--CEEEEECCCCCEEchhHH
Confidence 3333 33 235778889986 44 559999999999877654
No 52
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.82 E-value=4.5e-20 Score=128.66 Aligned_cols=111 Identities=21% Similarity=0.313 Sum_probs=86.4
Q ss_pred eecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhC--CCcEEEEEecCC-HHHHHHHHHHhC
Q 045485 17 YFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSK--GVDIVACISVND-AFVMKAWKENLG 93 (164)
Q Consensus 17 ~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~--~v~vi~~is~d~-~~~~~~~~~~~~ 93 (164)
+.+.+|+. ++|+++ +||++||+|| ++|||.|+.+ +|.+++++++++++ ++++++ |+.|. .+..++|+++++
T Consensus 3 l~~~~G~~--v~l~~~-~gk~vll~Fw-a~wC~~C~~~-~p~l~~~~~~~~~~~~~~~vv~-is~d~~~~~~~~~~~~~~ 76 (131)
T cd03009 3 LLRNDGGK--VPVSSL-EGKTVGLYFS-ASWCPPCRAF-TPKLVEFYEKLKESGKNFEIVF-ISWDRDEESFNDYFSKMP 76 (131)
T ss_pred ccccCCCC--ccHHHh-CCcEEEEEEE-CCCChHHHHH-hHHHHHHHHHHHhcCCCEEEEE-EECCCCHHHHHHHHHcCC
Confidence 35678987 999999 7998888887 8999999998 99999999999865 788899 88874 455677777654
Q ss_pred CCCceEEE-EeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEe
Q 045485 94 INDEVLLL-SDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNL 146 (164)
Q Consensus 94 ~~~~~~~l-~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~ 146 (164)
+. .+++. +|.+..++++||+. ++ |+++|||++|+|+....
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~~v~----------~~--P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 77 WL-AVPFSDRERRSRLNRTFKIE----------GI--PTLIILDADGEVVTTDA 117 (131)
T ss_pred ee-EcccCCHHHHHHHHHHcCCC----------CC--CEEEEECCCCCEEcccH
Confidence 32 12222 24557899999996 34 56999999999987654
No 53
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.81 E-value=8.1e-19 Score=128.99 Aligned_cols=128 Identities=11% Similarity=0.140 Sum_probs=93.9
Q ss_pred CCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec--------C
Q 045485 9 KLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV--------N 80 (164)
Q Consensus 9 ~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~--------d 80 (164)
.+++|+ +.+.+|+. ++|+++ +||++||+|| |+||+.|. + ++.|++++++|+++|+.|++ ++. +
T Consensus 4 ~~~~f~--~~~~~G~~--v~Ls~~-~GKvvLVvf~-AS~C~~~~-q-~~~L~~L~~~y~~~gl~Vlg-~p~nqf~~qe~~ 74 (183)
T PRK10606 4 SILTTV--VTTIDGEV--TTLEKY-AGNVLLIVNV-ASKCGLTP-Q-YEQLENIQKAWADQGFVVLG-FPCNQFLGQEPG 74 (183)
T ss_pred CccCcE--eECCCCCE--EeHHHh-CCCEEEEEEE-eCCCCCcH-H-HHHHHHHHHHHhhCCeEEEE-eeccccccCCCC
Confidence 578888 56889987 999999 7998888887 99999885 6 99999999999999999999 765 4
Q ss_pred CHHHHHHHHH-HhCCCCceEEEEe--Ccch----HHHHhCCcccc-CC----C-----------C---CCCCcceeEEEE
Q 045485 81 DAFVMKAWKE-NLGINDEVLLLSD--GNGV----FTKAIGCELDL-SD----K-----------P---MGLGVRSRRYAL 134 (164)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~l~D--~~~~----~~~~~gv~~~~-~~----~-----------~---~~~~~~~p~~~l 134 (164)
+.+++++|++ +++++ ||++++ .++. +.+-+.-.... .. + + ..+ ..+=+-||
T Consensus 75 ~~~ei~~f~~~~~g~~--Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i-~WNF~KFL 151 (183)
T PRK10606 75 SDEEIKTYCRTTWGVT--FPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDI-LWNFEKFL 151 (183)
T ss_pred CHHHHHHHHHHccCCC--ceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcc-cccCEEEE
Confidence 7889999997 79999 999955 3322 33333211100 00 0 0 001 11224899
Q ss_pred EecCCcEEEEEeec
Q 045485 135 LAENGVVKVLNLEE 148 (164)
Q Consensus 135 id~~G~I~~~~~~~ 148 (164)
||++|+++.++...
T Consensus 152 v~~~G~vv~r~~~~ 165 (183)
T PRK10606 152 VGRDGQVIQRFSPD 165 (183)
T ss_pred ECCCCcEEEEECCC
Confidence 99999999998753
No 54
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.79 E-value=3.5e-19 Score=129.96 Aligned_cols=117 Identities=12% Similarity=0.065 Sum_probs=86.6
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHH
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAF 83 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~ 83 (164)
+.+....|+|++. +|+. ++++++ + ||+|| ++|||+|+.+ +|.++++++++ |+.|++ |+.|...
T Consensus 49 ~~~~~~~~~f~l~----dG~~--v~lsd~-~----lV~Fw-aswCp~C~~e-~P~L~~l~~~~---g~~Vi~-Vs~D~~~ 111 (181)
T PRK13728 49 RTEKPAPRWFRLS----NGRQ--VNLADW-K----VVLFM-QGHCPYCHQF-DPVLKQLAQQY---GFSVFP-YTLDGQG 111 (181)
T ss_pred ccCCCCCCccCCC----CCCE--eehhHc-e----EEEEE-CCCCHhHHHH-HHHHHHHHHHc---CCEEEE-EEeCCCC
Confidence 3445567898852 7887 999999 4 56666 9999999998 99999998886 699999 8877432
Q ss_pred HHHHHHHHhCCCCceEEEEe-CcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEE-EEeecCCceeecCHHHHH
Q 045485 84 VMKAWKENLGINDEVLLLSD-GNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKV-LNLEEGGAFTFSGAEDML 161 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~D-~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~-~~~~~~~~~~~~~~~~~l 161 (164)
... ||++.| ..+.+.+.||+... ++ |++||||++|+|++ .+.|. .+...+++.+
T Consensus 112 ---------~~~--fPv~~dd~~~~~~~~~g~~~~--------~i--PttfLId~~G~i~~~~~~G~---~~~~~L~~~I 167 (181)
T PRK13728 112 ---------DTA--FPEALPAPPDVMQTFFPNIPV--------AT--PTTFLVNVNTLEALPLLQGA---TDAAGFMARM 167 (181)
T ss_pred ---------CCC--CceEecCchhHHHHHhCCCCC--------CC--CeEEEEeCCCcEEEEEEECC---CCHHHHHHHH
Confidence 256 999996 56778889995211 34 56999999999975 78853 3344444443
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.71 E-value=3.7e-17 Score=107.69 Aligned_cols=90 Identities=21% Similarity=0.369 Sum_probs=72.5
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHH-hCCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEEe---CcchHH
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELK-SKGVDIVACISVND-AFVMKAWKENLGINDEVLLLSD---GNGVFT 109 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~-~~~v~vi~~is~d~-~~~~~~~~~~~~~~~~~~~l~D---~~~~~~ 109 (164)
||+++|+|| ++||+.|..+ +|.+.+++++++ ..++.+|+ |+.|. .++.++++++.+.+ +..+.. ....+.
T Consensus 1 gK~~ll~fw-a~~c~~c~~~-~~~l~~l~~~~~~~~~v~~v~-Vs~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKE-LPKLKELYKKYKKKDDVEFVF-VSLDEDEEEWKKFLKKNNFP--WYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHH-HHHHHHHHHHHTTTTTEEEEE-EE-SSSHHHHHHHHHTCTTS--SEEEETTTHHHHHHH
T ss_pred CCEEEEEEE-CCCCHHHHHH-HHHHHHHHHHhCCCCCEEEEE-EEeCCCHHHHHHHHHhcCCC--ceEEeeCcchHHHHH
Confidence 688888888 9999999998 999999999998 67899999 78774 68889999998776 555443 357889
Q ss_pred HHhCCccccCCCCCCCCcceeEEEEEecCCcE
Q 045485 110 KAIGCELDLSDKPMGLGVRSRRYALLAENGVV 141 (164)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I 141 (164)
+.|++. ++ |+++|||++|+|
T Consensus 76 ~~~~i~----------~i--P~~~lld~~G~I 95 (95)
T PF13905_consen 76 KKYGIN----------GI--PTLVLLDPDGKI 95 (95)
T ss_dssp HHTT-T----------SS--SEEEEEETTSBE
T ss_pred HHCCCC----------cC--CEEEEECCCCCC
Confidence 999997 33 669999999997
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.58 E-value=4.2e-15 Score=106.39 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=65.0
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHH-HHh--
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFT-KAI-- 112 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~-- 112 (164)
+..||+|| ++|||+|+.+ +|.++++++++ ++.+++ |+.|.... .. |+...|.+.... +.|
T Consensus 51 ~~~lvnFW-AsWCppCr~e-~P~L~~l~~~~---~~~Vi~-Vs~d~~~~---------~~--fp~~~~~~~~~~~~~~~~ 113 (153)
T TIGR02738 51 DYALVFFY-QSTCPYCHQF-APVLKRFSQQF---GLPVYA-FSLDGQGL---------TG--FPDPLPATPEVMQTFFPN 113 (153)
T ss_pred CCEEEEEE-CCCChhHHHH-HHHHHHHHHHc---CCcEEE-EEeCCCcc---------cc--cccccCCchHHHHHHhcc
Confidence 34577777 9999999998 99999998876 688899 78775321 13 666555444443 445
Q ss_pred -CCccccCCCCCCCCcceeEEEEEecCCcE-EEEEeecCCceeecCHHHHHhh
Q 045485 113 -GCELDLSDKPMGLGVRSRRYALLAENGVV-KVLNLEEGGAFTFSGAEDMLKA 163 (164)
Q Consensus 113 -gv~~~~~~~~~~~~~~~p~~~lid~~G~I-~~~~~~~~~~~~~~~~~~~l~~ 163 (164)
++. ++ |++||||++|++ +..+.+ ..+.+.+++.++.
T Consensus 114 ~~v~----------~i--PTt~LID~~G~~i~~~~~G---~~s~~~l~~~I~~ 151 (153)
T TIGR02738 114 PRPV----------VT--PATFLVNVNTRKAYPVLQG---AVDEAELANRMDE 151 (153)
T ss_pred CCCC----------CC--CeEEEEeCCCCEEEEEeec---ccCHHHHHHHHHH
Confidence 443 34 569999999876 446665 3445555555543
No 57
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.57 E-value=2.5e-14 Score=104.58 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=97.9
Q ss_pred CCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhC--CCcEEEEEecC----
Q 045485 7 GDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSK--GVDIVACISVN---- 80 (164)
Q Consensus 7 G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~--~v~vi~~is~d---- 80 (164)
....|+|+ ++|.+|+. ++++++ +||++||+|++..|-..|... +..|.++++++.+. .++++. ||.|
T Consensus 29 ~~~~~~f~--L~d~~G~~--~~~~~~-~Gk~~lv~F~yT~CpdvCp~~-l~~l~~~~~~l~~~~~~v~~v~-ISvDP~~D 101 (174)
T PF02630_consen 29 PRIVPDFT--LTDQDGKT--VTLDDL-KGKWVLVFFGYTRCPDVCPTT-LANLSQLQKQLGEEGKDVQFVF-ISVDPERD 101 (174)
T ss_dssp SCSSST-E--EEETTSSE--EEGGGG-TTSEEEEEEE-TTSSSHHHHH-HHHHHHHHHHHHHTTTTEEEEE-EESSTTTC
T ss_pred CccCCCcE--EEcCCCCE--ecHHHh-CCCeEEEEEEEcCCCccCHHH-HHHHHHHHHHhhhccCceEEEE-EEeCCCCC
Confidence 34578888 57999998 999999 799999999865544789997 99999999999865 577888 8875
Q ss_pred CHHHHHHHHHHhCCCCceEEEEeC---cchHHHHhCCccccCC---CCC-CCCcceeEEEEEecCCcEEEEEee
Q 045485 81 DAFVMKAWKENLGINDEVLLLSDG---NGVFTKAIGCELDLSD---KPM-GLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~D~---~~~~~~~~gv~~~~~~---~~~-~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
+|+.+++|.+.++.+ +..+... -..+++.|++...... ... ..-.++..+||||++|+|+..+.+
T Consensus 102 Tp~~L~~Y~~~~~~~--~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 102 TPEVLKKYAKKFGPD--FIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp -HHHHHHHHHCHTTT--CEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred CHHHHHHHHHhcCCC--cceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 699999999999877 6665543 2667889998764211 111 111255679999999999988753
No 58
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.36 E-value=8.9e-13 Score=93.37 Aligned_cols=90 Identities=12% Similarity=0.161 Sum_probs=64.8
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
+|+++||+|| ++||+.|... .|.+.++++++.+ .+.++. |..|... ...++++|+
T Consensus 19 ~gk~vvV~F~-A~WC~~C~~~-~p~l~~l~~~~~~-~~~~v~-v~vd~~~---------------------~~~~~~~~~ 73 (142)
T cd02950 19 NGKPTLVEFY-ADWCTVCQEM-APDVAKLKQKYGD-QVNFVM-LNVDNPK---------------------WLPEIDRYR 73 (142)
T ss_pred CCCEEEEEEE-CCcCHHHHHh-HHHHHHHHHHhcc-CeeEEE-EEcCCcc---------------------cHHHHHHcC
Confidence 5777888887 9999999998 9999999998863 466777 6665421 013567888
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHhh
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKA 163 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~~ 163 (164)
+. ++ |+++++|++|+++....+. ...+.++++|+.
T Consensus 74 V~----------~i--Pt~v~~~~~G~~v~~~~G~---~~~~~l~~~l~~ 108 (142)
T cd02950 74 VD----------GI--PHFVFLDREGNEEGQSIGL---QPKQVLAQNLDA 108 (142)
T ss_pred CC----------CC--CEEEEECCCCCEEEEEeCC---CCHHHHHHHHHH
Confidence 86 34 5599999999999988863 334444555443
No 59
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.36 E-value=1.6e-12 Score=101.21 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=68.6
Q ss_pred eehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcc
Q 045485 27 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNG 106 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~ 106 (164)
..++++ +|+++||+|| ++|||+|..+ .|.|+++++++ |+.|++ |+.|.... .. |+.+ +.+.
T Consensus 159 ~~l~~l-~~k~~Lv~F~-AswCp~C~~~-~P~L~~la~~y---g~~Vi~-VsvD~~~~---------~~--fp~~-~~d~ 219 (271)
T TIGR02740 159 RVMKDL-AKKSGLFFFF-KSDCPYCHQQ-APILQAFEDRY---GIEVLP-VSVDGGPL---------PG--FPNA-RPDA 219 (271)
T ss_pred HHHHHh-cCCeEEEEEE-CCCCccHHHH-hHHHHHHHHHc---CcEEEE-EeCCCCcc---------cc--CCcc-cCCH
Confidence 778888 7888877777 8999999998 99999998876 688999 88875321 12 5444 4456
Q ss_pred hHHHHhCCccccCCCCCCCCcceeEEEEEec-CCcEEEEEee
Q 045485 107 VFTKAIGCELDLSDKPMGLGVRSRRYALLAE-NGVVKVLNLE 147 (164)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~-~G~I~~~~~~ 147 (164)
.++++|||. ++ |++||+|+ +|+|..+..|
T Consensus 220 ~la~~~gV~----------~v--Ptl~Lv~~~~~~v~~v~~G 249 (271)
T TIGR02740 220 GQAQQLKIR----------TV--PAVFLADPDPNQFTPIGFG 249 (271)
T ss_pred HHHHHcCCC----------cC--CeEEEEECCCCEEEEEEeC
Confidence 688999996 34 66999999 5667666664
No 60
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.31 E-value=1.3e-11 Score=82.61 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=57.5
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
+++++||.|| ++||++|+.. .|.|+++++++ .++.++. |..|..... ..++++|+
T Consensus 14 ~~k~vvv~F~-a~wC~~C~~~-~p~l~~la~~~--~~v~~~~-vd~d~~~~~--------------------~~l~~~~~ 68 (103)
T cd02985 14 KGRLVVLEFA-LKHSGPSVKI-YPTMVKLSRTC--NDVVFLL-VNGDENDST--------------------MELCRREK 68 (103)
T ss_pred CCCEEEEEEE-CCCCHhHHHH-hHHHHHHHHHC--CCCEEEE-EECCCChHH--------------------HHHHHHcC
Confidence 5788888887 9999999998 99999999988 5677777 766653222 24556777
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEEEEEeec
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
|. ++| + |++-++|+++..+.+.
T Consensus 69 V~----------~~P--t-~~~~~~G~~v~~~~G~ 90 (103)
T cd02985 69 II----------EVP--H-FLFYKDGEKIHEEEGI 90 (103)
T ss_pred CC----------cCC--E-EEEEeCCeEEEEEeCC
Confidence 76 444 3 5555999999888864
No 61
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.30 E-value=4e-11 Score=85.06 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=83.6
Q ss_pred eecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCC--CcEEEEEecC-CHHHHHHHHHHhC
Q 045485 17 YFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKG--VDIVACISVN-DAFVMKAWKENLG 93 (164)
Q Consensus 17 ~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~--v~vi~~is~d-~~~~~~~~~~~~~ 93 (164)
+...+|.. +..++..+||.+.++| .+.|||+|+.= .|.+.+.++++++.+ ++||. ||.| +.+++..|.+.++
T Consensus 17 l~~~~~~~--~~~~~~l~gKvV~lyF-sA~wC~pCR~F-TP~Lk~fYe~l~~~~~~fEVvf-VS~D~~~~~~~~y~~~~~ 91 (157)
T KOG2501|consen 17 LRKQDGTE--VLASEALQGKVVGLYF-SAHWCPPCRDF-TPILKDFYEELKDNAAPFEVVF-VSSDRDEESLDEYMLEHH 91 (157)
T ss_pred eeccCCcc--chHhHhhCCcEEEEEE-EEEECCchhhC-CchHHHHHHHHHhcCCceEEEE-EecCCCHHHHHHHHHhcC
Confidence 34556765 6666555887555554 59999999997 999999999998654 78888 7887 5678889999877
Q ss_pred CCCceEEE---EeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEe
Q 045485 94 INDEVLLL---SDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNL 146 (164)
Q Consensus 94 ~~~~~~~l---~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~ 146 (164)
.+ |..+ .+....+.+.|++. ++ |+..+++++|+++....
T Consensus 92 ~~--W~~iPf~d~~~~~l~~ky~v~----------~i--P~l~i~~~dG~~v~~d~ 133 (157)
T KOG2501|consen 92 GD--WLAIPFGDDLIQKLSEKYEVK----------GI--PALVILKPDGTVVTEDA 133 (157)
T ss_pred CC--eEEecCCCHHHHHHHHhcccC----------cC--ceeEEecCCCCEehHhh
Confidence 66 4333 33457888999987 33 56999999998876553
No 62
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.6e-10 Score=81.27 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=94.7
Q ss_pred CCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec--------CCH
Q 045485 11 PDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV--------NDA 82 (164)
Q Consensus 11 P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~--------d~~ 82 (164)
=||+ ..+.+|+. ++|+++ +||.++|+.- ||-|..-.. -..|+.++++|+++|..|++ .-. .+.
T Consensus 6 yd~~--~~~~~G~~--~~l~~~-~GkVlLIVNt-ASkCGfTpQ--YegLe~Ly~ky~~~Gf~VLg-FPcNQF~~QEPg~~ 76 (162)
T COG0386 6 YDFS--VKDIDGEP--VSLSDY-KGKVLLIVNT-ASKCGFTPQ--YEGLEALYKKYKDKGFEVLG-FPCNQFGGQEPGSD 76 (162)
T ss_pred ccce--eeccCCCC--ccHHHh-CCcEEEEEEc-ccccCCcHh--HHHHHHHHHHHhhCCcEEEe-ccccccccCCCCCH
Confidence 3666 56889987 999999 7998888887 999999884 69999999999999999999 533 368
Q ss_pred HHHHHHHHH-hCCCCceEEEEeC--cch----HHHHhCCccccCC-CCCCCCcceeEEEEEecCCcEEEEEeecCCceee
Q 045485 83 FVMKAWKEN-LGINDEVLLLSDG--NGV----FTKAIGCELDLSD-KPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTF 154 (164)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~l~D~--~~~----~~~~~gv~~~~~~-~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~ 154 (164)
+++++|++. +|.+ ||+++-. ++. +.+.+--... +. ....+ ..+=+-||||++|+|+.++.... ..
T Consensus 77 eEI~~fC~~~YgVt--Fp~f~Ki~VnG~~a~PLy~~L~~~~~-g~~~~~~I-kWNFtKFLvdr~G~VV~Rf~p~t---~P 149 (162)
T COG0386 77 EEIAKFCQLNYGVT--FPMFSKIDVNGKNAHPLYKYLKEQKP-GKLGGKDI-KWNFTKFLVDRDGNVVKRFSPKT---KP 149 (162)
T ss_pred HHHHHHHHhccCce--eeeeeEEeecCCCCCcHHHHHHhcCC-CCccCCcc-ceeeEEEEEcCCCcEEEeeCCCC---Ch
Confidence 899999865 7999 9998742 221 2222221110 00 00011 23345899999999999998642 33
Q ss_pred cCHHHHHhh
Q 045485 155 SGAEDMLKA 163 (164)
Q Consensus 155 ~~~~~~l~~ 163 (164)
.+.+..|+.
T Consensus 150 ~d~~~~Ie~ 158 (162)
T COG0386 150 EDIELAIEK 158 (162)
T ss_pred hhHHHHHHH
Confidence 344444443
No 63
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=87.60 Aligned_cols=129 Identities=21% Similarity=0.198 Sum_probs=95.0
Q ss_pred CeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHH---hCCCcEEEEEecC----CHHH
Q 045485 12 DATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELK---SKGVDIVACISVN----DAFV 84 (164)
Q Consensus 12 ~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~---~~~v~vi~~is~d----~~~~ 84 (164)
+|+ +.+.+|+. +++.++ +|++.+|+|.+..|.-+|..+ +..+.++++++. ...++++. ||.| +++.
T Consensus 49 ~f~--l~d~~G~~--~~~~~l-~Gk~~lv~FgyT~CpdVCP~~-l~~l~~~~~~l~~~~~~~v~vv~-itvDPerDtp~~ 121 (207)
T COG1999 49 DFE--LTDQDGKP--FTLKDL-KGKPSLVFFGYTHCPDVCPTT-LAELKALLKKLGEGEGDDVQVVF-ITVDPERDTPEV 121 (207)
T ss_pred cee--eecCCCCE--eecccc-CCCEEEEEeecCCCCccChHH-HHHHHHHHHHhccccCCCEEEEE-EEECCCCCCHHH
Confidence 677 56889998 999999 899999999855444589998 999999999997 44567777 8875 6888
Q ss_pred HHHHHHHhCCCCceEEEEeC---cchHHHHhCCccc--cCCCC-CCCCcceeEEEEEecCCcEEEEEeec
Q 045485 85 MKAWKENLGINDEVLLLSDG---NGVFTKAIGCELD--LSDKP-MGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~D~---~~~~~~~~gv~~~--~~~~~-~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
+++|.. .+....|..+... ..+++++|++... ..++. ...-.++...|+||++|++.....+.
T Consensus 122 lk~Y~~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~ 190 (207)
T COG1999 122 LKKYAE-LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG 190 (207)
T ss_pred HHHHhc-ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCC
Confidence 889988 3333237777764 3678999999852 11111 11113556699999999998887763
No 64
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=99.26 E-value=1.7e-10 Score=85.51 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=101.2
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhhhcCCCc-EEEEEec-----CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSDLTSNKK-AILFAVP-----GAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC 76 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~-vvl~f~~-----~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~ 76 (164)
.|..+..-.+..|. +.+|+ ++|+|+..|+. ++|+.|. ..-||.|... +.+++.....+.++++.+++
T Consensus 39 ~LP~v~v~~~Y~F~--g~~G~---v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~-~D~~~g~l~hL~~rd~tfa~- 111 (211)
T PF05988_consen 39 RLPMVEVDKDYVFD--GPDGP---VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFW-ADHIDGALRHLHARDTTFAV- 111 (211)
T ss_pred hCCCccCCCCeEEe--CCCCc---ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhh-HhhhhhhHHHHHhCCceEEE-
Confidence 34455555566653 44565 89999998874 5555553 5779999997 99998999999999999888
Q ss_pred EecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeec
Q 045485 77 ISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 77 is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
||..+.+++.+|.++.|++ ||.+|..+.++...|++....+.+..+ =..|+-|. |+|.+.+...
T Consensus 112 vSraP~~~i~afk~rmGW~--~pw~Ss~gs~Fn~D~~~~~~~~~~~~g-----~svF~Rdg-~~VfhTyst~ 175 (211)
T PF05988_consen 112 VSRAPLEKIEAFKRRMGWT--FPWYSSYGSDFNYDFGVSFDEGGEMPG-----LSVFLRDG-GRVFHTYSTY 175 (211)
T ss_pred EeCCCHHHHHHHHHhcCCC--ceEEEcCCCcccccccceeccCCCcee-----EEEEEEcC-CEEEEEeecC
Confidence 9999999999999999999 999999999999999997653332223 22455444 8998888753
No 65
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.18 E-value=1.9e-11 Score=84.41 Aligned_cols=101 Identities=10% Similarity=0.045 Sum_probs=65.6
Q ss_pred CC-CcEEEEEecCCCCcCCCcCchhhHH---HhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHH
Q 045485 34 SN-KKAILFAVPGAFTPTCSQKHLPGFV---EKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFT 109 (164)
Q Consensus 34 ~g-~~vvl~f~~~~~cp~C~~~~l~~l~---~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (164)
.+ ++++|+|| ++||++|+.. .+.+. ++.+.++ .++.++. +..+.......| . -....+..++
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~-~~~~~~~~~~~~~~~-~~~~~~~-i~~d~~~~~~~~------~----~~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKL-KRDYLNDPAVQAYIR-AHFVVVY-INIDGDKEVTDF------D----GEALSEKELA 77 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHH-HHHhcCcHHHHHHHH-hheEEEE-EEccCCceeecc------C----CCCccHHHHH
Confidence 46 67777776 9999999987 77774 4445554 4666677 666643222221 1 1112457889
Q ss_pred HHhCCccccCCCCCCCCcceeEEEEEecC-CcEEEEEeecCCceeecCHHHHHhh
Q 045485 110 KAIGCELDLSDKPMGLGVRSRRYALLAEN-GVVKVLNLEEGGAFTFSGAEDMLKA 163 (164)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~p~~~lid~~-G~I~~~~~~~~~~~~~~~~~~~l~~ 163 (164)
++|++. ++ |+++++|++ |+++....+. ...+.+..+|+.
T Consensus 78 ~~~~v~----------~~--Pt~~~~~~~gg~~~~~~~G~---~~~~~~~~~l~~ 117 (125)
T cd02951 78 RKYRVR----------FT--PTVIFLDPEGGKEIARLPGY---LPPDEFLAYLEY 117 (125)
T ss_pred HHcCCc----------cc--cEEEEEcCCCCceeEEecCC---CCHHHHHHHHHH
Confidence 999987 34 569999999 8999888753 334455555543
No 66
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.16 E-value=2.2e-10 Score=77.69 Aligned_cols=89 Identities=20% Similarity=0.297 Sum_probs=62.9
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
++++++|.|| ++||+.|+.. .|.+.++.++++..++.+.. +..|. +..++++||
T Consensus 23 ~~~~vlV~F~-a~wC~~C~~~-~p~~~~l~~~~~~~~v~~~~-vd~d~-----------------------~~~l~~~~~ 76 (111)
T cd02963 23 FKKPYLIKIT-SDWCFSCIHI-EPVWKEVIQELEPLGVGIAT-VNAGH-----------------------ERRLARKLG 76 (111)
T ss_pred CCCeEEEEEE-CCccHhHHHh-hHHHHHHHHHHHhcCceEEE-Eeccc-----------------------cHHHHHHcC
Confidence 4677888887 9999999997 89999999999766666655 55442 245677888
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHhhC
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 164 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~~l 164 (164)
+. ++ |+++++ ++|+++....+ ..+.+.+.+.|+.|
T Consensus 77 V~----------~~--Pt~~i~-~~g~~~~~~~G---~~~~~~l~~~i~~~ 111 (111)
T cd02963 77 AH----------SV--PAIVGI-INGQVTFYHDS---SFTKQHVVDFVRKL 111 (111)
T ss_pred Cc----------cC--CEEEEE-ECCEEEEEecC---CCCHHHHHHHHhcC
Confidence 86 34 458888 48888776664 23344555555543
No 67
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.12 E-value=4.1e-10 Score=75.03 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=55.2
Q ss_pred hhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHH
Q 045485 30 SDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFT 109 (164)
Q Consensus 30 ~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (164)
+++ +|++++|.|| ++||++|+.. .|.+.+++++++ ++.++. +..++ ....++
T Consensus 14 ~~~-~g~~vlV~F~-a~WC~~C~~~-~p~l~~la~~~~--~~~~~~-vd~~~----------------------~~~~l~ 65 (100)
T cd02999 14 AFN-REDYTAVLFY-ASWCPFSASF-RPHFNALSSMFP--QIRHLA-IEESS----------------------IKPSLL 65 (100)
T ss_pred Hhc-CCCEEEEEEE-CCCCHHHHhH-hHHHHHHHHHhc--cCceEE-EECCC----------------------CCHHHH
Confidence 356 7898888888 9999999998 999999999884 577777 53331 123677
Q ss_pred HHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 110 KAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
++|++. ++ |++++++++ .+..+.+
T Consensus 66 ~~~~V~----------~~--PT~~lf~~g--~~~~~~G 89 (100)
T cd02999 66 SRYGVV----------GF--PTILLFNST--PRVRYNG 89 (100)
T ss_pred HhcCCe----------ec--CEEEEEcCC--ceeEecC
Confidence 899987 34 558888755 4444443
No 68
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.10 E-value=4.4e-10 Score=75.02 Aligned_cols=87 Identities=10% Similarity=0.041 Sum_probs=59.5
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
++++++|+|| ++||++|+.. .|.|.++++++.+..+.++. +..|. .+++++|+
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~-~p~l~~~~~~~~~~~~~~~~-vd~d~------------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAV-VSLFKKIKNELGDDLLHFAT-AEADT------------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHH-hHHHHHHHHHcCCCcEEEEE-EeCCC------------------------HHHHHHcC
Confidence 4677788887 9999999998 99999998888644444444 54442 23457777
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHhhC
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 164 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~~l 164 (164)
+. ++| +|++-++|+++....+. ....+.+.|++|
T Consensus 69 v~----------~~P---t~~~~~~g~~~~~~~G~----~~~~~~~~i~~~ 102 (102)
T cd02948 69 GK----------CEP---TFLFYKNGELVAVIRGA----NAPLLNKTITEL 102 (102)
T ss_pred CC----------cCc---EEEEEECCEEEEEEecC----ChHHHHHHHhhC
Confidence 76 344 46666899998888853 234455555543
No 69
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.06 E-value=3.3e-11 Score=81.36 Aligned_cols=95 Identities=12% Similarity=0.192 Sum_probs=60.2
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHH--hCCCcEEEEEecCCHH-HHHHHHHHhCCCCceEEEEeCcchHHH
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELK--SKGVDIVACISVNDAF-VMKAWKENLGINDEVLLLSDGNGVFTK 110 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~--~~~v~vi~~is~d~~~-~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (164)
+|+++|++|| ..|||.|... .+.+.+..+-.. ..++.++. +..+... ...++.+..+.. .+. .....+++
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~l~~ 76 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKL-EKELFPDNDVARYLKDDFQVIF-VNIDDSRDESEAVLDFDGQK--NVR--LSNKELAQ 76 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHH-HHHHHHHHHHHCEEHCECEEEE-CESHSHHHHHHHHHSHTCHS--SCH--HHHHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHH-HHHHHHHHHHHHHhhcCeEEEE-EecCCcccccccccccccch--hhh--HHHHHHHH
Confidence 4678888887 9999999976 577765433111 23577777 6665543 344565544432 222 12357999
Q ss_pred HhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 111 AIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
+||+. ++ |+++++|++|++++...|
T Consensus 77 ~~~v~----------gt--Pt~~~~d~~G~~v~~~~G 101 (112)
T PF13098_consen 77 RYGVN----------GT--PTIVFLDKDGKIVYRIPG 101 (112)
T ss_dssp HTT------------SS--SEEEECTTTSCEEEEEES
T ss_pred HcCCC----------cc--CEEEEEcCCCCEEEEecC
Confidence 99997 44 559999999999988774
No 70
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.04 E-value=7.8e-10 Score=72.60 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=53.7
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
+++++||+|| ++||+.|+.. .|.++++.+.+.. .+.++. +..+ ....++++|+
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~-~~~~~~~~~~~~~-~~~~~~-vd~~-----------------------~~~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKEL-LPLLERLAEEYQG-QFVLAK-VNCD-----------------------AQPQIAQQFG 63 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHH-HHHHHHHHHHhCC-cEEEEE-Eecc-----------------------CCHHHHHHcC
Confidence 3677888887 9999999998 9999999988853 344444 4332 2346778888
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
+. ++ |++++++ +|+++....+
T Consensus 64 i~----------~~--Pt~~~~~-~g~~~~~~~g 84 (96)
T cd02956 64 VQ----------AL--PTVYLFA-AGQPVDGFQG 84 (96)
T ss_pred CC----------CC--CEEEEEe-CCEEeeeecC
Confidence 86 34 5588886 8988776664
No 71
>PRK09381 trxA thioredoxin; Provisional
Probab=98.98 E-value=1.8e-09 Score=72.62 Aligned_cols=85 Identities=14% Similarity=0.255 Sum_probs=58.5
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
+++++|.|| ++|||.|+.. .|.++++++++.. ++.++. +..+. ...++++|++
T Consensus 21 ~~~vvv~f~-~~~C~~C~~~-~p~~~~l~~~~~~-~~~~~~-vd~~~-----------------------~~~~~~~~~v 73 (109)
T PRK09381 21 DGAILVDFW-AEWCGPCKMI-APILDEIADEYQG-KLTVAK-LNIDQ-----------------------NPGTAPKYGI 73 (109)
T ss_pred CCeEEEEEE-CCCCHHHHHH-hHHHHHHHHHhCC-CcEEEE-EECCC-----------------------ChhHHHhCCC
Confidence 567777777 9999999998 8999999999863 465555 54432 2345677888
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHh
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLK 162 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~ 162 (164)
. ++ |+++++ ++|+++....+. .....++..|+
T Consensus 74 ~----------~~--Pt~~~~-~~G~~~~~~~G~---~~~~~l~~~i~ 105 (109)
T PRK09381 74 R----------GI--PTLLLF-KNGEVAATKVGA---LSKGQLKEFLD 105 (109)
T ss_pred C----------cC--CEEEEE-eCCeEEEEecCC---CCHHHHHHHHH
Confidence 6 34 556666 799998887753 23334444444
No 72
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.1e-08 Score=72.85 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=93.1
Q ss_pred CCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec--------CCH
Q 045485 11 PDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV--------NDA 82 (164)
Q Consensus 11 P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~--------d~~ 82 (164)
=+|+ .+|.+|+. ++|+.+ +||.++|+.. |+.|..-... -.+|+.++++|+++|..|++ .-. .+.
T Consensus 15 ydf~--~~d~~G~~--v~l~~y-rGkV~LiVNV-AS~Cg~T~~~-Y~~l~~L~~ky~~~Gl~ILa-FPCNQFg~QEp~~n 86 (171)
T KOG1651|consen 15 YDFS--AKDLDGEY--VSLSQY-RGKVVLIVNV-ASQCGLTESQ-YTELNELYEKYKDQGLEILA-FPCNQFGNQEPGSN 86 (171)
T ss_pred eeeE--EecCCCCC--ccHHHh-CCeEEEEEEc-ccccccchhc-chhHHHHHHHHhhCCeEEEE-eccccccCcCCCCc
Confidence 3555 68999987 999999 6998888887 9999999976 68999999999999999888 533 356
Q ss_pred HHHHHHH-HHhCCCCceEEEE--eCcch----HHHHhCCccccCCCCCCCC-cceeEEEEEecCCcEEEEEeecCCcee-
Q 045485 83 FVMKAWK-ENLGINDEVLLLS--DGNGV----FTKAIGCELDLSDKPMGLG-VRSRRYALLAENGVVKVLNLEEGGAFT- 153 (164)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~l~--D~~~~----~~~~~gv~~~~~~~~~~~~-~~~p~~~lid~~G~I~~~~~~~~~~~~- 153 (164)
+++..|+ .+++.. |+++. |.+|+ +.+-+.-.. .+..+-. ..+=+-||||++|+|+.++.....+.+
T Consensus 87 ~Ei~~f~~~r~~~~--f~if~KidVNG~~~~PlykfLK~~~---~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~ 161 (171)
T KOG1651|consen 87 EEILNFVKVRYGAE--FPIFQKIDVNGDNADPLYKFLKKVK---GGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDI 161 (171)
T ss_pred HHHHHHHHhccCCC--CccEeEEecCCCCCchHHHHHhhcC---CCcccccceeeeEEEeECCCCcEEEeeCCCCCcccc
Confidence 6777776 567777 88876 33332 222221110 0011101 122357999999999999876433333
Q ss_pred ecCHHHHH
Q 045485 154 FSGAEDML 161 (164)
Q Consensus 154 ~~~~~~~l 161 (164)
..+++.+|
T Consensus 162 ~~dIe~lL 169 (171)
T KOG1651|consen 162 EKDIEKLL 169 (171)
T ss_pred chhHHHHh
Confidence 22444444
No 73
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.95 E-value=1.6e-09 Score=72.25 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=53.2
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhH---HHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHH
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGF---VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTK 110 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l---~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (164)
.+++++|+|| ++||++|... .+.+ .++.+.+.+ ++.++. +..+... +....+++
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~-~~~~~~~~~~~~~~~~-~~~~~~-vd~~~~~-------------------~~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVN-EKVVFSDPEVQAALKK-DVVLLR-ADWTKND-------------------PEITALLK 66 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHH-HHHhcCCHHHHHHHhC-CeEEEE-EecCCCC-------------------HHHHHHHH
Confidence 4677888887 9999999986 6666 466666653 666566 4443210 00235667
Q ss_pred HhCCccccCCCCCCCCcceeEEEEEec-CCcEEEEEee
Q 045485 111 AIGCELDLSDKPMGLGVRSRRYALLAE-NGVVKVLNLE 147 (164)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~p~~~lid~-~G~I~~~~~~ 147 (164)
+|++. ++ |+++++++ +|++.....+
T Consensus 67 ~~~i~----------~~--Pti~~~~~~~g~~~~~~~G 92 (104)
T cd02953 67 RFGVF----------GP--PTYLFYGPGGEPEPLRLPG 92 (104)
T ss_pred HcCCC----------CC--CEEEEECCCCCCCCccccc
Confidence 77776 34 55999999 8998877774
No 74
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.92 E-value=6.7e-09 Score=78.87 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=89.2
Q ss_pred CeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCc-CCCcCchhhHHHhHHHHHhC-CCcE--EEEEecC----CHH
Q 045485 12 DATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTP-TCSQKHLPGFVEKSAELKSK-GVDI--VACISVN----DAF 83 (164)
Q Consensus 12 ~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp-~C~~~~l~~l~~~~~~~~~~-~v~v--i~~is~d----~~~ 83 (164)
+|+ |.|.+|+. ++-.|+ .|||++|||- .++|| +|..| +..|.+..+++.+. |+.+ |. |+.| +++
T Consensus 121 pF~--L~d~~Gk~--~te~df-~Gkw~LiYFG-FThCPDICPdE-LeKm~~~Vd~i~~~~~~~~~PlF-IsvDPeRD~~~ 192 (280)
T KOG2792|consen 121 PFS--LVDHDGKR--VTEKDF-LGKWSLIYFG-FTHCPDICPDE-LEKMSAVVDEIEAKPGLPPVPLF-ISVDPERDSVE 192 (280)
T ss_pred ceE--EEecCCCe--eccccc-ccceEEEEec-ccCCCCcChHH-HHHHHHHHHHHhccCCCCccceE-EEeCcccCCHH
Confidence 566 67899998 999999 6999999998 46776 79997 99999999998743 3332 45 5654 699
Q ss_pred HHHHHHHHhCCCCceEEEEeC---cchHHHHhCCcccc-CC----CCCCCCcceeEEEEEecCCcEEEEE
Q 045485 84 VMKAWKENLGINDEVLLLSDG---NGVFTKAIGCELDL-SD----KPMGLGVRSRRYALLAENGVVKVLN 145 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~D~---~~~~~~~~gv~~~~-~~----~~~~~~~~~p~~~lid~~G~I~~~~ 145 (164)
.+.+|+++++.. +.=|... -.++++.|-|+... ++ ++.. -++=-+|||||+|+.+-.+
T Consensus 193 ~~~eY~~eF~pk--llGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlV--DHSi~mYLidPeg~Fvd~~ 258 (280)
T KOG2792|consen 193 VVAEYVSEFHPK--LLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLV--DHSIFMYLIDPEGEFVDYY 258 (280)
T ss_pred HHHHHHHhcChh--hhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeee--eeeEEEEEECCCcceehhh
Confidence 999999998765 4444443 26789999998763 11 1211 1223489999999986544
No 75
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.91 E-value=5.3e-09 Score=69.29 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=49.6
Q ss_pred hcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHH
Q 045485 32 LTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKA 111 (164)
Q Consensus 32 ~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 111 (164)
..+|+ ++|.|| ++||++|+.. .|.+.++++.++..++.+.. +.. |.+..++++
T Consensus 14 ~~~~~-~lv~f~-a~wC~~C~~~-~p~~~~l~~~~~~~~v~~~~-vd~-----------------------~~~~~~~~~ 66 (101)
T cd02994 14 VLEGE-WMIEFY-APWCPACQQL-QPEWEEFADWSDDLGINVAK-VDV-----------------------TQEPGLSGR 66 (101)
T ss_pred HhCCC-EEEEEE-CCCCHHHHHH-hHHHHHHHHhhccCCeEEEE-EEc-----------------------cCCHhHHHH
Confidence 43565 667777 9999999997 99999998877544554444 321 223456788
Q ss_pred hCCccccCCCCCCCCcceeEEEEEecCCcEEEEEe
Q 045485 112 IGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNL 146 (164)
Q Consensus 112 ~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~ 146 (164)
|++. ++| +++++ ++|++ ..+.
T Consensus 67 ~~i~----------~~P--t~~~~-~~g~~-~~~~ 87 (101)
T cd02994 67 FFVT----------ALP--TIYHA-KDGVF-RRYQ 87 (101)
T ss_pred cCCc----------ccC--EEEEe-CCCCE-EEec
Confidence 8886 444 46655 88986 4444
No 76
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.89 E-value=6.7e-09 Score=69.35 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.3
Q ss_pred hcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCC
Q 045485 32 LTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGV 71 (164)
Q Consensus 32 ~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v 71 (164)
..+++.++|.|| ++|||+|+.. .|.++++++++++.+.
T Consensus 12 ~~~~~~vlv~f~-a~wC~~C~~~-~p~l~~l~~~~~~~~~ 49 (104)
T cd03000 12 VRKEDIWLVDFY-APWCGHCKKL-EPVWNEVGAELKSSGS 49 (104)
T ss_pred hccCCeEEEEEE-CCCCHHHHhh-ChHHHHHHHHHHhcCC
Confidence 435566776766 9999999998 8999999999976553
No 77
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.88 E-value=3.5e-08 Score=67.17 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=69.1
Q ss_pred HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCC-----------------
Q 045485 59 FVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDK----------------- 121 (164)
Q Consensus 59 l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~----------------- 121 (164)
|.+..+++++.|+.+|+ |+.++++..++|++..+++ ++++.|+++.+++++|+.......
T Consensus 2 L~~~~~~l~~~gv~lv~-I~~g~~~~~~~f~~~~~~p--~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVV-IGCGSPEGIEKFCELTGFP--FPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSA 78 (115)
T ss_pred hhHhHHHHHHcCCeEEE-EEcCCHHHHHHHHhccCCC--CcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHH
Confidence 56678899999999999 8999997899999999999 999999999999999987521110
Q ss_pred --------C-CCCCcceeEEEEEecCCcEEEEEee
Q 045485 122 --------P-MGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 122 --------~-~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
. .+-.....++||+|++|+|+|.|..
T Consensus 79 ~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 79 KNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 0 1112233579999999999999984
No 78
>PRK10996 thioredoxin 2; Provisional
Probab=98.84 E-value=1.2e-08 Score=71.98 Aligned_cols=86 Identities=13% Similarity=0.165 Sum_probs=58.6
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
+++++|+|| ++||+.|+.. .+.|.++++++. .++.++. +..+ .+..++++|++
T Consensus 52 ~k~vvv~F~-a~wC~~C~~~-~~~l~~l~~~~~-~~v~~~~-vd~~-----------------------~~~~l~~~~~V 104 (139)
T PRK10996 52 DLPVVIDFW-APWCGPCRNF-APIFEDVAAERS-GKVRFVK-VNTE-----------------------AERELSARFRI 104 (139)
T ss_pred CCeEEEEEE-CCCCHHHHHH-HHHHHHHHHHhC-CCeEEEE-EeCC-----------------------CCHHHHHhcCC
Confidence 566777777 9999999997 899999988775 3455555 4322 23567888888
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHhh
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKA 163 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~~ 163 (164)
. ++| +++++ ++|+++....+. ...+.+++.|+.
T Consensus 105 ~----------~~P--tlii~-~~G~~v~~~~G~---~~~e~l~~~l~~ 137 (139)
T PRK10996 105 R----------SIP--TIMIF-KNGQVVDMLNGA---VPKAPFDSWLNE 137 (139)
T ss_pred C----------ccC--EEEEE-ECCEEEEEEcCC---CCHHHHHHHHHH
Confidence 6 455 45555 699998877753 334455555554
No 79
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.80 E-value=2.2e-08 Score=66.08 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=51.3
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
+++++++|| ++||+.|... .+.+.++.+++.+ ++.++. +..|. +..++++|++
T Consensus 13 ~~~vlv~f~-a~~C~~C~~~-~~~l~~l~~~~~~-~v~~~~-id~d~-----------------------~~~l~~~~~v 65 (97)
T cd02949 13 DRLILVLYT-SPTCGPCRTL-KPILNKVIDEFDG-AVHFVE-IDIDE-----------------------DQEIAEAAGI 65 (97)
T ss_pred CCeEEEEEE-CCCChhHHHH-HHHHHHHHHHhCC-ceEEEE-EECCC-----------------------CHHHHHHCCC
Confidence 456666666 9999999997 8999999888753 454444 44332 2356778888
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
. ++ |+.++++ +|+++....+
T Consensus 66 ~----------~v--Pt~~i~~-~g~~v~~~~g 85 (97)
T cd02949 66 M----------GT--PTVQFFK-DKELVKEISG 85 (97)
T ss_pred e----------ec--cEEEEEE-CCeEEEEEeC
Confidence 6 34 5588885 7999877775
No 80
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.79 E-value=6e-08 Score=64.17 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=51.5
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCC-CcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHh
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKG-VDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAI 112 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~-v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (164)
++++++|+|| ++||+.|+.. .+.++++.+.+.+.+ +.++. +..+. |....+.++|
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~-~~~~~~~~~~~~~~~~~~~~~-id~~~---------------------~~~~~~~~~~ 71 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKM-KPEFTKAATELKEDGKGVLAA-VDCTK---------------------PEHDALKEEY 71 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHh-CHHHHHHHHHHhhCCceEEEE-EECCC---------------------CccHHHHHhC
Confidence 4567777777 9999999997 899999998887533 22222 32222 1235577888
Q ss_pred CCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 113 GCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 113 gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
|+. ++| + +++.++|+++....+
T Consensus 72 ~i~----------~~P--t-~~~~~~g~~~~~~~g 93 (104)
T cd02997 72 NVK----------GFP--T-FKYFENGKFVEKYEG 93 (104)
T ss_pred CCc----------ccc--E-EEEEeCCCeeEEeCC
Confidence 886 344 3 666678988765553
No 81
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.79 E-value=1.9e-08 Score=66.48 Aligned_cols=74 Identities=9% Similarity=0.172 Sum_probs=51.9
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHh--CCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHh
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKS--KGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAI 112 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~--~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (164)
.++++|.|| ++||+.|+.. .|.+++++++++. ..+.++. +..+ .+..++++|
T Consensus 16 ~~~~lv~f~-a~wC~~C~~~-~p~~~~~~~~~~~~~~~~~~~~-vd~~-----------------------~~~~~~~~~ 69 (102)
T cd03005 16 EGNHFVKFF-APWCGHCKRL-APTWEQLAKKFNNENPSVKIAK-VDCT-----------------------QHRELCSEF 69 (102)
T ss_pred cCCEEEEEE-CCCCHHHHHh-CHHHHHHHHHHhccCCcEEEEE-EECC-----------------------CChhhHhhc
Confidence 345777777 9999999997 9999999999875 2344444 3322 234577788
Q ss_pred CCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 113 GCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 113 gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
++. ++ |+.+++ ++|+.+..+.+
T Consensus 70 ~v~----------~~--Pt~~~~-~~g~~~~~~~G 91 (102)
T cd03005 70 QVR----------GY--PTLLLF-KDGEKVDKYKG 91 (102)
T ss_pred CCC----------cC--CEEEEE-eCCCeeeEeeC
Confidence 886 34 457777 68887766664
No 82
>PTZ00051 thioredoxin; Provisional
Probab=98.78 E-value=4.6e-08 Score=64.25 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=52.1
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
++.++|+|| ++||+.|+.. .+.+.++.+++ .++.++. +..+ ....++++|++
T Consensus 18 ~~~vli~f~-~~~C~~C~~~-~~~l~~l~~~~--~~~~~~~-vd~~-----------------------~~~~~~~~~~v 69 (98)
T PTZ00051 18 NELVIVDFY-AEWCGPCKRI-APFYEECSKEY--TKMVFVK-VDVD-----------------------ELSEVAEKENI 69 (98)
T ss_pred CCeEEEEEE-CCCCHHHHHH-hHHHHHHHHHc--CCcEEEE-EECc-----------------------chHHHHHHCCC
Confidence 456777776 9999999997 89999988866 3555555 4332 12457788888
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEeec
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
. ++| + +++-++|+++....+.
T Consensus 70 ~----------~~P--t-~~~~~~g~~~~~~~G~ 90 (98)
T PTZ00051 70 T----------SMP--T-FKVFKNGSVVDTLLGA 90 (98)
T ss_pred c----------eee--E-EEEEeCCeEEEEEeCC
Confidence 6 344 3 5666899999888864
No 83
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.78 E-value=3e-08 Score=66.35 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=50.6
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
+++++|.|| ++||+.|+.. .|.+.++.+++. ..+.++. +..+.. .+..++++|++
T Consensus 18 ~~~~lv~f~-a~wC~~C~~~-~~~~~~~a~~~~-~~~~~~~-v~~~~~---------------------~~~~~~~~~~i 72 (109)
T cd03002 18 NYTTLVEFY-APWCGHCKNL-KPEYAKAAKELD-GLVQVAA-VDCDED---------------------KNKPLCGKYGV 72 (109)
T ss_pred CCeEEEEEE-CCCCHHHHhh-ChHHHHHHHHhc-CCceEEE-EecCcc---------------------ccHHHHHHcCC
Confidence 566777777 9999999997 899999998885 3466666 655531 13467778888
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCc
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGV 140 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~ 140 (164)
. ++ |+.+++++++.
T Consensus 73 ~----------~~--Pt~~~~~~~~~ 86 (109)
T cd03002 73 Q----------GF--PTLKVFRPPKK 86 (109)
T ss_pred C----------cC--CEEEEEeCCCc
Confidence 6 34 55999988873
No 84
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.76 E-value=4e-08 Score=66.23 Aligned_cols=77 Identities=12% Similarity=0.256 Sum_probs=53.1
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHH-Hh
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTK-AI 112 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~~ 112 (164)
.+++++|.|| ++|||.|+.. .|.+.++.+.+++.++.+.. +..|.. +..+++ .|
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~-~~~~~~la~~~~~~~~~~~~-vd~d~~----------------------~~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAM-EASYEELAEKLAGSNVKVAK-FNADGE----------------------QREFAKEEL 74 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHH-hHHHHHHHHHhccCCeEEEE-EECCcc----------------------chhhHHhhc
Confidence 3677777777 9999999997 89999999999866676666 555540 112333 46
Q ss_pred CCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 113 GCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 113 gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
++. ++ |+.++++++++..+.+.+
T Consensus 75 ~v~----------~~--Pti~~f~~~~~~~~~y~g 97 (109)
T cd02993 75 QLK----------SF--PTILFFPKNSRQPIKYPS 97 (109)
T ss_pred CCC----------cC--CEEEEEcCCCCCceeccC
Confidence 665 33 558888888776555543
No 85
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.75 E-value=3.9e-08 Score=64.70 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=51.5
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCC-CcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHh
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKG-VDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAI 112 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~-v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (164)
++++++|+|| ++||+.|+.. .+.++++.+.++..+ +.++. .|. |.+..+.++|
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~-~~~~~~~~~~~~~~~~~~~~~---~d~---------------------~~~~~~~~~~ 65 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNL-APEYEKLAKELKGDPDIVLAK---VDA---------------------TAEKDLASRF 65 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhh-ChHHHHHHHHhccCCceEEEE---EEc---------------------cchHHHHHhC
Confidence 4677788887 9999999997 899999988886443 33322 222 2235667788
Q ss_pred CCccccCCCCCCCCcceeEEEEEecCCcEEEEEe
Q 045485 113 GCELDLSDKPMGLGVRSRRYALLAENGVVKVLNL 146 (164)
Q Consensus 113 gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~ 146 (164)
++. ++ |+.+++++++. ...+.
T Consensus 66 ~i~----------~~--P~~~~~~~~~~-~~~~~ 86 (102)
T TIGR01126 66 GVS----------GF--PTIKFFPKGKK-PVDYE 86 (102)
T ss_pred CCC----------cC--CEEEEecCCCc-ceeec
Confidence 886 34 55999999887 44444
No 86
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.73 E-value=6.9e-08 Score=64.23 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=52.2
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
+++++|.|| ++||+.|+.. .|.+.++.+++. ..+.+.. +..+. +..++++|++
T Consensus 19 ~~~v~v~f~-a~wC~~C~~~-~p~~~~~~~~~~-~~~~~~~-vd~~~-----------------------~~~~~~~~~i 71 (104)
T cd03004 19 KEPWLVDFY-APWCGPCQAL-LPELRKAARALK-GKVKVGS-VDCQK-----------------------YESLCQQANI 71 (104)
T ss_pred CCeEEEEEE-CCCCHHHHHH-HHHHHHHHHHhc-CCcEEEE-EECCc-----------------------hHHHHHHcCC
Confidence 456777776 9999999998 999999999884 3354444 44332 3456677777
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
. ++ |+.+++.++|+....+.+
T Consensus 72 ~----------~~--Pt~~~~~~g~~~~~~~~G 92 (104)
T cd03004 72 R----------AY--PTIRLYPGNASKYHSYNG 92 (104)
T ss_pred C----------cc--cEEEEEcCCCCCceEccC
Confidence 6 34 558888777677766664
No 87
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.73 E-value=5.2e-08 Score=73.71 Aligned_cols=136 Identities=16% Similarity=0.216 Sum_probs=92.3
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhhhcC-CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSDLTS-NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN- 80 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~-g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d- 80 (164)
...+|..|||.++ .+.+|+. ..++.|+.+ ++++||+|- +-.||+=... ++.|+++.++|.+ -+.++. |...
T Consensus 72 ~a~~G~~APns~v--v~l~g~~-~~~ildf~~g~RPLVlnFG-S~TCPpF~~~-l~~f~~l~~~f~d-~adFl~-VYI~E 144 (237)
T PF00837_consen 72 EAKLGGPAPNSPV--VTLDGQR-SCRILDFAKGNRPLVLNFG-SCTCPPFMAK-LDAFKRLVEDFSD-VADFLI-VYIEE 144 (237)
T ss_pred ceeCCCCCCCCce--EeeCCCc-ceeHHHhccCCCCeEEEcc-cccchHHHHH-HHHHHHHHHHhhh-hhheeh-hhHhh
Confidence 3568999999995 4556653 278999964 468888887 4459999997 9999999999975 234454 4221
Q ss_pred --------------------C----HHHHHHHHHHhCCCCceEEEEeC-cchHHHHhCCccccCCCCCCCCcceeEEEEE
Q 045485 81 --------------------D----AFVMKAWKENLGINDEVLLLSDG-NGVFTKAIGCELDLSDKPMGLGVRSRRYALL 135 (164)
Q Consensus 81 --------------------~----~~~~~~~~~~~~~~~~~~~l~D~-~~~~~~~~gv~~~~~~~~~~~~~~~p~~~li 135 (164)
+ ....+.++ ++... +|++.|. ++...+.||.. |+| .|||
T Consensus 145 AHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~-~~~~~--~pi~vD~mdN~~~~~YgA~------------PeR-lyIi 208 (237)
T PF00837_consen 145 AHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLK-EEFPQ--CPIVVDTMDNNFNKAYGAL------------PER-LYII 208 (237)
T ss_pred hCcCCCccCCCCceeecCCCCHHHHHHHHHHHH-hhCCC--CCEEEEccCCHHHHHhCCC------------cce-EEEE
Confidence 1 11223333 34456 9999997 89999999985 433 5666
Q ss_pred ecCCcEEEEEee-cCCceeecCHHHHHhh
Q 045485 136 AENGVVKVLNLE-EGGAFTFSGAEDMLKA 163 (164)
Q Consensus 136 d~~G~I~~~~~~-~~~~~~~~~~~~~l~~ 163 (164)
++|+|+|..-. +. ....+++++.|++
T Consensus 209 -~~gkv~Y~Gg~GP~-~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 209 -QDGKVVYKGGPGPF-GYSPEELREWLEK 235 (237)
T ss_pred -ECCEEEEeCCCCCC-cCCHHHHHHHHHh
Confidence 59999887642 21 2335567776664
No 88
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.72 E-value=5.6e-08 Score=63.67 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=51.3
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
+++++|+|| ++||+.|+.. .+.|.++.+++ ..++.++. +..+ ....+.++|++
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~-~~~l~~l~~~~-~~~i~~~~-vd~~-----------------------~~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQM-NQVFEELAKEA-FPSVLFLS-IEAE-----------------------ELPEISEKFEI 66 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHH-hHHHHHHHHHh-CCceEEEE-Eccc-----------------------cCHHHHHhcCC
Confidence 466777777 9999999997 89999998886 24555555 3221 12457788888
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
. ++ |+++++ ++|+++....+
T Consensus 67 ~----------~~--Pt~~~~-~~g~~~~~~~g 86 (97)
T cd02984 67 T----------AV--PTFVFF-RNGTIVDRVSG 86 (97)
T ss_pred c----------cc--cEEEEE-ECCEEEEEEeC
Confidence 6 34 446666 58999877775
No 89
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.71 E-value=6.7e-08 Score=65.76 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=52.9
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
++.+||.|| ++||++|+.. .|.|.++.+++.+. +.++- |..|. ...++++|+|
T Consensus 14 ~~~vVV~F~-A~WCgpCk~m-~P~le~la~~~~~~-v~f~k-VDvD~-----------------------~~~la~~~~V 66 (114)
T cd02954 14 EKVVVIRFG-RDWDPVCMQM-DEVLAKIAEDVSNF-AVIYL-VDIDE-----------------------VPDFNKMYEL 66 (114)
T ss_pred CCEEEEEEE-CCCChhHHHH-HHHHHHHHHHccCc-eEEEE-EECCC-----------------------CHHHHHHcCC
Confidence 556777777 9999999997 89999999988422 34444 43332 3456778888
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEeec
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
. ++| +|++=++|+++....+.
T Consensus 67 ~----------~iP---Tf~~fk~G~~v~~~~G~ 87 (114)
T cd02954 67 Y----------DPP---TVMFFFRNKHMKIDLGT 87 (114)
T ss_pred C----------CCC---EEEEEECCEEEEEEcCC
Confidence 6 455 46667789999888774
No 90
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.70 E-value=8.4e-08 Score=64.65 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=65.4
Q ss_pred eecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec-------CCHHHHHHHH
Q 045485 17 YFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV-------NDAFVMKAWK 89 (164)
Q Consensus 17 ~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~-------d~~~~~~~~~ 89 (164)
..+.+|+. ++|+.+ +||+++|+.. |+-|..-. . ...|++++++++++|..|++.-+. ++.+++++|+
T Consensus 6 ~~~~~G~~--v~l~~y-~Gkv~LIVNv-As~Cg~t~-q-y~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 6 AKDIDGKP--VSLSKY-KGKVLLIVNV-ASKCGYTK-Q-YKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp EEBTTSSE--EEGGGG-TTSEEEEEEE-ESSSTTHH-H-HHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred eeCCCCCE--ECHHHc-CCCEEEEEec-ccccCCcc-c-cHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 57889987 999999 7998888888 88999888 6 899999999999999999994332 3678899998
Q ss_pred HH-hCCCCceEEEE
Q 045485 90 EN-LGINDEVLLLS 102 (164)
Q Consensus 90 ~~-~~~~~~~~~l~ 102 (164)
.. ++.+ |+++.
T Consensus 80 ~~~~~~~--F~vf~ 91 (108)
T PF00255_consen 80 KEKFGVT--FPVFE 91 (108)
T ss_dssp CHCHT-S--SEEBS
T ss_pred HhccCCc--ccceE
Confidence 77 7888 99875
No 91
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.67 E-value=4.7e-08 Score=64.79 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=32.3
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
.+++++|.|| ++||+.|+.. .|.+.++.++++. .+.+.. +..|
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~-~p~~~~~a~~~~~-~~~~~~-vd~~ 59 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDL-APTWREFAKEMDG-VIRIGA-VNCG 59 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHh-HHHHHHHHHHhcC-ceEEEE-EeCC
Confidence 4566777777 9999999997 9999999998853 345445 5544
No 92
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.63 E-value=1.7e-07 Score=61.39 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=56.3
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
++.++|+|| ++||+.|+.. .+.++++.+++. ..+.++. +..+ .+..+.++|++
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~-~~~l~~~~~~~~-~~~~~~~-vd~~-----------------------~~~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMI-APILEELAKEYE-GKVKFVK-LNVD-----------------------ENPDIAAKYGI 66 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHh-CHHHHHHHHHhc-CCeEEEE-EECC-----------------------CCHHHHHHcCC
Confidence 456777777 9999999997 899999988875 3466555 4432 22356677887
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHh
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLK 162 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~ 162 (164)
. ++ |+.+++ ++|++.....+. .+.+.+.+.|+
T Consensus 67 ~----------~~--P~~~~~-~~g~~~~~~~g~---~~~~~l~~~l~ 98 (101)
T TIGR01068 67 R----------SI--PTLLLF-KNGKEVDRSVGA---LPKAALKQLIN 98 (101)
T ss_pred C----------cC--CEEEEE-eCCcEeeeecCC---CCHHHHHHHHH
Confidence 6 33 558888 688877655542 23344555544
No 93
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.61 E-value=1.1e-07 Score=65.21 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCcEEEEEecC-------CCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcc
Q 045485 34 SNKKAILFAVPG-------AFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNG 106 (164)
Q Consensus 34 ~g~~vvl~f~~~-------~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~ 106 (164)
+|++++|.|| | +|||+|+.. .|.+.++.+++. .++.++- |..|... ...|++.
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~-~P~l~~l~~~~~-~~v~fv~-Vdvd~~~----------------~w~d~~~ 79 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKA-EPVVREALKAAP-EDCVFIY-CDVGDRP----------------YWRDPNN 79 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhh-chhHHHHHHHCC-CCCEEEE-EEcCCcc----------------cccCcch
Confidence 4678888888 8 999999997 899999988885 3577777 6665422 1124456
Q ss_pred hHHHHhCCccccCCCCCCCCcceeEEEEEecCCcE
Q 045485 107 VFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVV 141 (164)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I 141 (164)
.+.+.|++. . ++ |+.+++...++|
T Consensus 80 ~~~~~~~I~-~--------~i--PT~~~~~~~~~l 103 (119)
T cd02952 80 PFRTDPKLT-T--------GV--PTLLRWKTPQRL 103 (119)
T ss_pred hhHhccCcc-c--------CC--CEEEEEcCCcee
Confidence 677777775 1 23 457777555544
No 94
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.61 E-value=1.9e-07 Score=61.67 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=51.7
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHh-CCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKS-KGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~-~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
+++++|.|| ++||+.|+.. .+.+.++.++++. .++.++. +..+.+ ...++++|+
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~-~~~~~~~~~~~~~~~~~~~~~-id~~~~----------------------~~~~~~~~~ 72 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNL-APEYEKLAAVFANEDDVVIAK-VDADEA----------------------NKDLAKKYG 72 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhh-ChHHHHHHHHhCCCCCEEEEE-EECCCc----------------------chhhHHhCC
Confidence 456777777 9999999997 8999999998862 2344444 333331 245677888
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEEEEEe
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVKVLNL 146 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~ 146 (164)
+. ++ |++++++++|+....+.
T Consensus 73 i~----------~~--P~~~~~~~~~~~~~~~~ 93 (105)
T cd02998 73 VS----------GF--PTLKFFPKGSTEPVKYE 93 (105)
T ss_pred CC----------Cc--CEEEEEeCCCCCccccC
Confidence 86 34 55899988876655544
No 95
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.61 E-value=2.6e-07 Score=61.93 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=46.6
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceE-EEEeCcchHHHHhC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVL-LLSDGNGVFTKAIG 113 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~g 113 (164)
+++++|.|| ++||+.|+.. .|.+.++++.+++..-. ...+. |. +=.|.+..++++||
T Consensus 18 ~~~vlv~F~-a~wC~~C~~~-~p~~~~~a~~~~~~~~~------------------~~~~~--~~~vd~d~~~~l~~~~~ 75 (108)
T cd02996 18 AELVLVNFY-ADWCRFSQML-HPIFEEAAAKIKEEFPD------------------AGKVV--WGKVDCDKESDIADRYR 75 (108)
T ss_pred CCEEEEEEE-CCCCHHHHhh-HHHHHHHHHHHhhccCC------------------CCcEE--EEEEECCCCHHHHHhCC
Confidence 456666666 9999999997 89999998887532100 00111 21 11344567888888
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEE
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVK 142 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~ 142 (164)
+. ++ |+.+++ ++|++.
T Consensus 76 v~----------~~--Ptl~~~-~~g~~~ 91 (108)
T cd02996 76 IN----------KY--PTLKLF-RNGMMM 91 (108)
T ss_pred CC----------cC--CEEEEE-eCCcCc
Confidence 86 44 447777 678743
No 96
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.60 E-value=3.8e-07 Score=62.90 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=58.7
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH--------HHHHHHHHHhCCCCceEEEEeCcc
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA--------FVMKAWKENLGINDEVLLLSDGNG 106 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~--------~~~~~~~~~~~~~~~~~~l~D~~~ 106 (164)
++.++++|+ ++|||+|+.- .|.|.++.++ .++.+.. +..|.. .++.+|.+++++. .
T Consensus 23 ~~~~iv~f~-~~~Cp~C~~~-~P~l~~~~~~---~~~~~y~-vdvd~~~~~~~~~~~~~~~~~~~~~i~--~-------- 86 (122)
T TIGR01295 23 KETATFFIG-RKTCPYCRKF-SGTLSGVVAQ---TKAPIYY-IDSENNGSFEMSSLNDLTAFRSRFGIP--T-------- 86 (122)
T ss_pred CCcEEEEEE-CCCChhHHHH-hHHHHHHHHh---cCCcEEE-EECCCccCcCcccHHHHHHHHHHcCCc--c--------
Confidence 556677777 8999999997 8999999876 3466777 666521 2455666655543 1
Q ss_pred hHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHH
Q 045485 107 VFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDML 161 (164)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l 161 (164)
++. ++| ++++=++|+.+....+. ..+.+++++++
T Consensus 87 ------~i~----------~~P---T~v~~k~Gk~v~~~~G~--~~~~~~l~~~~ 120 (122)
T TIGR01295 87 ------SFM----------GTP---TFVHITDGKQVSVRCGS--STTAQELQDIA 120 (122)
T ss_pred ------cCC----------CCC---EEEEEeCCeEEEEEeCC--CCCHHHHHHHh
Confidence 232 344 47777899988888752 23344555544
No 97
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.59 E-value=1.8e-07 Score=66.96 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=35.2
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
++.+||.|| ++||++|+.. .|.++++.+++.+.++.++. |..|.
T Consensus 47 ~~~vvV~Fy-a~wC~~Ck~l-~p~l~~la~~~~~~~v~f~~-VDvd~ 90 (152)
T cd02962 47 RVTWLVEFF-TTWSPECVNF-APVFAELSLKYNNNNLKFGK-IDIGR 90 (152)
T ss_pred CCEEEEEEE-CCCCHHHHHH-HHHHHHHHHHcccCCeEEEE-EECCC
Confidence 456777777 9999999997 99999999988766677777 65554
No 98
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.4e-07 Score=62.30 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=53.5
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
++.+|+.|+ ++||++|+.- .|.+.++..++.+ +.++. +..|. . ..+++.|++
T Consensus 21 ~kliVvdF~-a~wCgPCk~i-~P~~~~La~~y~~--v~Flk-vdvde---~--------------------~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFY-ATWCGPCKAI-APKFEKLAEKYPD--VVFLK-VDVDE---L--------------------EEVAKEFNV 72 (106)
T ss_pred CCeEEEEEE-CCCCcchhhh-hhHHHHHHHHCCC--CEEEE-Eeccc---C--------------------HhHHHhcCc
Confidence 465666665 9999999997 8999999999953 77777 66655 2 335567777
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEeecC
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG 149 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~ 149 (164)
. .+| +|++=++|+.+-..++-+
T Consensus 73 ~----------~~P---Tf~f~k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 73 K----------AMP---TFVFYKGGEEVDEVVGAN 94 (106)
T ss_pred e----------Eee---EEEEEECCEEEEEEecCC
Confidence 5 334 355559999888888643
No 99
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.57 E-value=2.4e-07 Score=60.24 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=55.8
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHH-hCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHh
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELK-SKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAI 112 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~-~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (164)
++++++|+|| ++||+.|... .+.+.++.+.++ ..++.++. +..+ .+..+.++|
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~~~-v~~~-----------------------~~~~~~~~~ 67 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKAL-APEYEKLAKELKGDGKVVVAK-VDCT-----------------------ANNDLCSEY 67 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhh-hHHHHHHHHHhccCCceEEEE-eecc-----------------------chHHHHHhC
Confidence 3456777777 8999999997 899999888875 34454444 3222 235677788
Q ss_pred CCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHhh
Q 045485 113 GCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKA 163 (164)
Q Consensus 113 gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~~ 163 (164)
++. ++ |+.++++++|+....+.+ ..+++++++.
T Consensus 68 ~i~----------~~--Pt~~~~~~~~~~~~~~~g------~~~~~~i~~~ 100 (101)
T cd02961 68 GVR----------GY--PTIKLFPNGSKEPVKYEG------PRTLESLVEF 100 (101)
T ss_pred CCC----------CC--CEEEEEcCCCcccccCCC------CcCHHHHHhh
Confidence 886 33 559999988744444332 2255666543
No 100
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.56 E-value=4.5e-07 Score=62.72 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=53.7
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhh-HH--HhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCCCCceEEEEeCcchHH
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPG-FV--EKSAELKSKGVDIVACISVN-DAFVMKAWKENLGINDEVLLLSDGNGVFT 109 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~-l~--~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (164)
.+|+++|+|+ ++||+.|+.. -+. +. ++.+.+. +++..|- +..+ .++..+.+.+ ...
T Consensus 14 ~~KpVll~f~-a~WC~~Ck~m-e~~~f~~~~V~~~l~-~~fv~Vk-vD~~~~~~~~~~~~~----------------~~~ 73 (124)
T cd02955 14 EDKPIFLSIG-YSTCHWCHVM-EHESFEDEEVAAILN-ENFVPIK-VDREERPDVDKIYMN----------------AAQ 73 (124)
T ss_pred cCCeEEEEEc-cCCCHhHHHH-HHHccCCHHHHHHHh-CCEEEEE-EeCCcCcHHHHHHHH----------------HHH
Confidence 4788888876 9999999964 231 22 2333332 3443333 3332 2222222211 111
Q ss_pred HHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeec--CCceeecCHHHHHhh
Q 045485 110 KAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE--GGAFTFSGAEDMLKA 163 (164)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~--~~~~~~~~~~~~l~~ 163 (164)
..||+. |+ |+++++|++|++++...+- ....+.+..-++|+.
T Consensus 74 ~~~~~~----------G~--Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 74 AMTGQG----------GW--PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred HhcCCC----------CC--CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 234554 44 5599999999999988763 223445566665553
No 101
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=1.4e-06 Score=64.89 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=77.3
Q ss_pred cCCCceeeeehhhhcCCCcEEEEE-e-----cCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHh
Q 045485 19 DSAGELQTITVSDLTSNKKAILFA-V-----PGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENL 92 (164)
Q Consensus 19 ~~~g~~~~~~l~d~~~g~~vvl~f-~-----~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~ 92 (164)
+.+|+ .+|+|+.+|+-.||+. | |..-||.|..- +-++......+...+|.+++ ||..+.+++..|.++.
T Consensus 59 ~~~G~---~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~l-aD~~dGa~~HL~~~dv~lv~-VsRAPl~~l~~~k~rm 133 (247)
T COG4312 59 TENGK---KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFL-ADHWDGAVAHLEHHDVTLVA-VSRAPLEELVAYKRRM 133 (247)
T ss_pred cCCcc---hhHHHHhCCCceEEEEEEecCCCccCCCCchhhH-HhhhhhhhhhHhhcCceEEE-EecCcHHHHHHHHHhc
Confidence 34565 7999999887544432 2 24569999987 88888888899999999999 9999999999999999
Q ss_pred CCCCceEEEEeCcchHHHHhCCccc
Q 045485 93 GINDEVLLLSDGNGVFTKAIGCELD 117 (164)
Q Consensus 93 ~~~~~~~~l~D~~~~~~~~~gv~~~ 117 (164)
|++ |+.+++.++++.+.|++...
T Consensus 134 GW~--f~w~Ss~~s~Fn~Df~vsf~ 156 (247)
T COG4312 134 GWQ--FPWVSSTDSDFNRDFQVSFT 156 (247)
T ss_pred CCc--ceeEeccCcccccccccccc
Confidence 999 99999999999999988654
No 102
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.51 E-value=5.1e-07 Score=63.72 Aligned_cols=74 Identities=11% Similarity=0.050 Sum_probs=49.2
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCC-CcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHh
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKG-VDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAI 112 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~-v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (164)
+++.+||.|| ++||++|... .|.|.++.+++. + +.++- |..|. ..++++.|
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m-~p~l~~la~~~~--~~~~~~k-VDVDe-----------------------~~dla~~y 73 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQM-DEVLASVAETIK--NFAVIYL-VDITE-----------------------VPDFNTMY 73 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHH-HHHHHHHHHHcC--CceEEEE-EECCC-----------------------CHHHHHHc
Confidence 4567777777 9999999997 799999988874 4 33333 44443 34566666
Q ss_pred CCccccCCCCCCCCcceeEEEEEecCCc-EEEEEee
Q 045485 113 GCELDLSDKPMGLGVRSRRYALLAENGV-VKVLNLE 147 (164)
Q Consensus 113 gv~~~~~~~~~~~~~~~p~~~lid~~G~-I~~~~~~ 147 (164)
++... |+++++=++|+ .+....+
T Consensus 74 ~I~~~------------~t~~~ffk~g~~~vd~~tG 97 (142)
T PLN00410 74 ELYDP------------CTVMFFFRNKHIMIDLGTG 97 (142)
T ss_pred CccCC------------CcEEEEEECCeEEEEEecc
Confidence 66521 44676677887 4555554
No 103
>PHA02278 thioredoxin-like protein
Probab=98.48 E-value=7.3e-07 Score=59.69 Aligned_cols=78 Identities=10% Similarity=0.012 Sum_probs=53.7
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
+++++||+|| ++||++|+.. .|.+.++.+++. ..+.++- +..|... + | ...++++|+
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m-~p~l~~l~~~~~-~~~~~~~-vdvd~~~--------------~----d-~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEIL-KSVIPMFQESGD-IKKPILT-LNLDAED--------------V----D-REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhH-HHHHHHHHhhhc-CCceEEE-EECCccc--------------c----c-cHHHHHHCC
Confidence 4677888888 9999999997 899999877643 2344555 5554320 0 1 234677888
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
|. ++| +|++=++|+++....|
T Consensus 70 I~----------~iP---T~i~fk~G~~v~~~~G 90 (103)
T PHA02278 70 IM----------STP---VLIGYKDGQLVKKYED 90 (103)
T ss_pred Cc----------ccc---EEEEEECCEEEEEEeC
Confidence 86 455 4677778999888875
No 104
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.45 E-value=1.5e-06 Score=55.29 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=49.0
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
+++++|+|| ++||+.|... .+.++++.++ ..++.++. +..+. +..+.+.|++
T Consensus 10 ~~~~ll~~~-~~~C~~C~~~-~~~~~~~~~~--~~~~~~~~-i~~~~-----------------------~~~~~~~~~v 61 (93)
T cd02947 10 AKPVVVDFW-APWCGPCKAI-APVLEELAEE--YPKVKFVK-VDVDE-----------------------NPELAEEYGV 61 (93)
T ss_pred CCcEEEEEE-CCCChhHHHh-hHHHHHHHHH--CCCceEEE-EECCC-----------------------ChhHHHhcCc
Confidence 356677776 8999999987 8888888776 35666666 54443 3456677777
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
. ++ |+++++ ++|++...+.+
T Consensus 62 ~----------~~--P~~~~~-~~g~~~~~~~g 81 (93)
T cd02947 62 R----------SI--PTFLFF-KNGKEVDRVVG 81 (93)
T ss_pred c----------cc--cEEEEE-ECCEEEEEEec
Confidence 5 34 446655 56777777765
No 105
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.44 E-value=1.6e-06 Score=65.43 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=63.7
Q ss_pred ehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcch
Q 045485 28 TVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGV 107 (164)
Q Consensus 28 ~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~ 107 (164)
.+.++ .+++.+++||. +.||.|... .|.++.+.+++ |+.|+. ||.|..- .. +++ -... +..
T Consensus 114 ~l~~l-a~~~gL~~F~~-~~C~~C~~~-~pil~~~~~~y---g~~v~~-vs~DG~~-----~~--~fp----~~~~-~~g 174 (215)
T PF13728_consen 114 ALKQL-AQKYGLFFFYR-SDCPYCQQQ-APILQQFADKY---GFSVIP-VSLDGRP-----IP--SFP----NPRP-DPG 174 (215)
T ss_pred HHHHH-hhCeEEEEEEc-CCCchhHHH-HHHHHHHHHHh---CCEEEE-EecCCCC-----Cc--CCC----CCCC-CHH
Confidence 45666 57788888885 579999998 99999998876 899999 8988521 00 222 1111 567
Q ss_pred HHHHhCCccccCCCCCCCCcceeEEEEEecCC-cEEEEEee
Q 045485 108 FTKAIGCELDLSDKPMGLGVRSRRYALLAENG-VVKVLNLE 147 (164)
Q Consensus 108 ~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G-~I~~~~~~ 147 (164)
++++||+... |++||+++++ ++.-+..|
T Consensus 175 ~~~~l~v~~~------------Pal~Lv~~~~~~~~pv~~G 203 (215)
T PF13728_consen 175 QAKRLGVKVT------------PALFLVNPNTKKWYPVSQG 203 (215)
T ss_pred HHHHcCCCcC------------CEEEEEECCCCeEEEEeee
Confidence 8889999633 7799999987 55555553
No 106
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.44 E-value=1.9e-07 Score=63.94 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=51.4
Q ss_pred eehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcc
Q 045485 27 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNG 106 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~ 106 (164)
+..+.. ++|+++|.|| ++||++|+.. .|.+.+...... .+..++. +..|... .
T Consensus 12 l~~A~~-~~kpVlV~F~-a~WC~~C~~~-~~~~~~~~~~~~-~~~~fv~-v~vd~~~----------------------~ 64 (117)
T cd02959 12 IKEAKD-SGKPLMLLIH-KTWCGACKAL-KPKFAESKEISE-LSHNFVM-VNLEDDE----------------------E 64 (117)
T ss_pred HHHHHH-cCCcEEEEEe-CCcCHHHHHH-HHHHhhhHHHHh-hcCcEEE-EEecCCC----------------------C
Confidence 344444 5788888888 9999999997 788888655433 3445555 4444211 0
Q ss_pred hHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 107 VFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
...+.|++... ++ |+++++|++|+++....+
T Consensus 65 ~~~~~~~~~g~--------~v--Pt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 65 PKDEEFSPDGG--------YI--PRILFLDPSGDVHPEIIN 95 (117)
T ss_pred chhhhcccCCC--------cc--ceEEEECCCCCCchhhcc
Confidence 01123443310 12 669999999999776544
No 107
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.43 E-value=4.7e-07 Score=77.44 Aligned_cols=91 Identities=10% Similarity=0.040 Sum_probs=55.6
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhH---HHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHH
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGF---VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTK 110 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l---~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (164)
+||+++|.|| ++||+.|+.. -+.+ .++.+++ +++.++. +..+..+ +.+.++.+
T Consensus 473 ~gK~VlVdF~-A~WC~~Ck~~-e~~~~~~~~v~~~l--~~~~~v~-vDvt~~~-------------------~~~~~l~~ 528 (571)
T PRK00293 473 KGKPVMLDLY-ADWCVACKEF-EKYTFSDPQVQQAL--ADTVLLQ-ADVTANN-------------------AEDVALLK 528 (571)
T ss_pred cCCcEEEEEE-CCcCHhHHHH-HHHhcCCHHHHHHh--cCCEEEE-EECCCCC-------------------hhhHHHHH
Confidence 4788888888 9999999975 3443 4455555 3455554 4433210 11346777
Q ss_pred HhCCccccCCCCCCCCcceeEEEEEecCCcEEE--EEeecCCceeecCHHHHHhh
Q 045485 111 AIGCELDLSDKPMGLGVRSRRYALLAENGVVKV--LNLEEGGAFTFSGAEDMLKA 163 (164)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~--~~~~~~~~~~~~~~~~~l~~ 163 (164)
+|++. ++ |+++++|++|+++. ...+ ..+.++..+.|++
T Consensus 529 ~~~v~----------g~--Pt~~~~~~~G~~i~~~r~~G---~~~~~~f~~~L~~ 568 (571)
T PRK00293 529 HYNVL----------GL--PTILFFDAQGQEIPDARVTG---FMDAAAFAAHLRQ 568 (571)
T ss_pred HcCCC----------CC--CEEEEECCCCCCcccccccC---CCCHHHHHHHHHH
Confidence 88886 44 55999999999853 4443 3344455555543
No 108
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.41 E-value=1.5e-06 Score=59.82 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=53.7
Q ss_pred CCcEEEEEecCCCCcC--CC--cCchhhHHHhHHHH-HhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHH
Q 045485 35 NKKAILFAVPGAFTPT--CS--QKHLPGFVEKSAEL-KSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFT 109 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~--C~--~~~l~~l~~~~~~~-~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 109 (164)
.+.+||.||++.||++ |+ .. .|.+.++.+++ ++.++.++- |.. |.+..++
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~-~p~~~~~aa~~l~~~~v~~~k-VD~-----------------------d~~~~La 80 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQM-EELVLELAAQVLEDKGIGFGL-VDS-----------------------KKDAKVA 80 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcc-hhhHHHHHHHHhhcCCCEEEE-EeC-----------------------CCCHHHH
Confidence 4557777777999988 98 55 57777777665 334555444 333 3345677
Q ss_pred HHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHhh
Q 045485 110 KAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKA 163 (164)
Q Consensus 110 ~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~~ 163 (164)
++|||. ++|+ .+++ ++|+++. ..+ ..+...+.+.|++
T Consensus 81 ~~~~I~----------~iPT--l~lf-k~G~~v~-~~G---~~~~~~l~~~l~~ 117 (120)
T cd03065 81 KKLGLD----------EEDS--IYVF-KDDEVIE-YDG---EFAADTLVEFLLD 117 (120)
T ss_pred HHcCCc----------cccE--EEEE-ECCEEEE-eeC---CCCHHHHHHHHHH
Confidence 888886 4553 5555 6898775 553 2334444444443
No 109
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.40 E-value=1.6e-06 Score=58.79 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=48.9
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
+++||.|| ++||++|+.. .|.++++.+++. ++.++- +..+. . .++++|++.
T Consensus 25 ~~vvv~F~-a~~c~~C~~l-~~~l~~la~~~~--~v~f~~-vd~~~-----------------------~-~l~~~~~i~ 75 (113)
T cd02957 25 TRVVVHFY-EPGFPRCKIL-DSHLEELAAKYP--ETKFVK-INAEK-----------------------A-FLVNYLDIK 75 (113)
T ss_pred CEEEEEEe-CCCCCcHHHH-HHHHHHHHHHCC--CcEEEE-EEchh-----------------------h-HHHHhcCCC
Confidence 66777777 9999999997 899999988773 454333 32221 1 455667775
Q ss_pred cccCCCCCCCCcceeEEEEEecCCcEEEEEeec
Q 045485 116 LDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 116 ~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
++| ++++=++|+++....+.
T Consensus 76 ----------~~P---t~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 76 ----------VLP---TLLVYKNGELIDNIVGF 95 (113)
T ss_pred ----------cCC---EEEEEECCEEEEEEecH
Confidence 344 36666789998888773
No 110
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.38 E-value=8.4e-07 Score=67.34 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=48.9
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
+++++|.|| ++||+.|+.. .|.++++++++++ .+.+.. + |- |.+..++++|+|
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~-~P~~e~la~~~~~-~v~~~~-V--D~---------------------~~~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKM-APAWERLAKALKG-QVNVAD-L--DA---------------------TRALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEE-CCCChHHHHH-HHHHHHHHHHcCC-CeEEEE-e--cC---------------------cccHHHHHHcCC
Confidence 367777877 9999999997 8999999998853 222222 2 21 122457788888
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEe
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNL 146 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~ 146 (164)
. ++ |++++++ +|+++....
T Consensus 105 ~----------~~--PTl~~f~-~G~~v~~~~ 123 (224)
T PTZ00443 105 K----------GY--PTLLLFD-KGKMYQYEG 123 (224)
T ss_pred C----------cC--CEEEEEE-CCEEEEeeC
Confidence 6 45 4488888 677765443
No 111
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.34 E-value=2.8e-06 Score=55.97 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=28.7
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEE
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVA 75 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~ 75 (164)
+++++|+|| ++||+.|+.. .|.+.++.+++.. .+.+..
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~-~~~~~~~~~~~~~-~~~~~~ 55 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNL-APEWKKAAKALKG-IVKVGA 55 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHH-hHHHHHHHHHhcC-CceEEE
Confidence 345777777 9999999997 8999999888752 344444
No 112
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.30 E-value=2.1e-06 Score=56.35 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=55.5
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
++++||.|| +.||+.|... .|.+.++.+++.+ ++.++- +..+. +..++++|++
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~-~~~~~~~~~~~~~-~v~~~~-vd~~~-----------------------~~~l~~~~~v 69 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAF-KPILEKLAKEYKD-NVKFAK-VDCDE-----------------------NKELCKKYGV 69 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHH-HHHHHHHHHHTTT-TSEEEE-EETTT-----------------------SHHHHHHTTC
T ss_pred CCCEEEEEe-CCCCCccccc-cceeccccccccc-ccccch-hhhhc-----------------------cchhhhccCC
Confidence 567777777 8999999997 9999999999875 666555 44431 2446667777
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHh
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLK 162 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~ 162 (164)
. ++| +.+++ ++|+......+ ..+.+++.+.|+
T Consensus 70 ~----------~~P--t~~~~-~~g~~~~~~~g---~~~~~~l~~~i~ 101 (103)
T PF00085_consen 70 K----------SVP--TIIFF-KNGKEVKRYNG---PRNAESLIEFIE 101 (103)
T ss_dssp S----------SSS--EEEEE-ETTEEEEEEES---SSSHHHHHHHHH
T ss_pred C----------CCC--EEEEE-ECCcEEEEEEC---CCCHHHHHHHHH
Confidence 5 344 35544 66766665553 233444444443
No 113
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.29 E-value=4.3e-06 Score=56.77 Aligned_cols=39 Identities=8% Similarity=-0.006 Sum_probs=25.6
Q ss_pred EEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 38 AILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 38 vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
.++++|+++|||+|+.. .|.+.++.+.+ ..+.+.. +..|
T Consensus 24 ~vvv~f~a~wC~~C~~~-~~~l~~la~~~--~~i~~~~-vd~d 62 (113)
T cd02975 24 DLVVFSSKEGCQYCEVT-KQLLEELSELS--DKLKLEI-YDFD 62 (113)
T ss_pred EEEEEeCCCCCCChHHH-HHHHHHHHHhc--CceEEEE-EeCC
Confidence 34445559999999986 78888887664 3455444 4333
No 114
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.28 E-value=3.9e-06 Score=64.49 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=64.1
Q ss_pred ehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcch
Q 045485 28 TVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGV 107 (164)
Q Consensus 28 ~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~ 107 (164)
.+.++ .+++.+++||+ +.||+|... .|.++.+.+++ |+.|++ ||.|.. +++ .||-. =++..
T Consensus 137 ~i~~l-a~~~GL~fFy~-s~Cp~C~~~-aPil~~fa~~y---g~~v~~-VS~DG~----------~~p-~fp~~-~~d~g 197 (248)
T PRK13703 137 AIAKL-AEHYGLMFFYR-GQDPIDGQL-AQVINDFRDTY---GLSVIP-VSVDGV----------INP-LLPDS-RTDQG 197 (248)
T ss_pred HHHHH-HhcceEEEEEC-CCCchhHHH-HHHHHHHHHHh---CCeEEE-EecCCC----------CCC-CCCCC-ccChh
Confidence 45666 56788888886 569999998 89999998876 899999 999863 121 13222 12445
Q ss_pred HHHHhCCccccCCCCCCCCcceeEEEEEecC-CcEEEEEee
Q 045485 108 FTKAIGCELDLSDKPMGLGVRSRRYALLAEN-GVVKVLNLE 147 (164)
Q Consensus 108 ~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~-G~I~~~~~~ 147 (164)
.++++|+... |++||++++ +++.-+..|
T Consensus 198 qa~~l~v~~~------------PAl~Lv~~~t~~~~pv~~G 226 (248)
T PRK13703 198 QAQRLGVKYF------------PALMLVDPKSGSVRPLSYG 226 (248)
T ss_pred HHHhcCCccc------------ceEEEEECCCCcEEEEeec
Confidence 5688998632 779999987 577766664
No 115
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.28 E-value=5.9e-06 Score=56.14 Aligned_cols=73 Identities=7% Similarity=0.022 Sum_probs=50.6
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
+++++||+|| ++||+.|+.. .|.+.++.+++ .++.++- |..+. ...++++|+
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~-~p~l~~la~~~--~~i~f~~-Vd~~~-----------------------~~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIM-DKHLEILAKKH--LETKFIK-VNAEK-----------------------APFLVEKLN 72 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHH-HHHHHHHHHHc--CCCEEEE-EEccc-----------------------CHHHHHHCC
Confidence 3567777777 9999999997 89999998877 3455544 33332 234667777
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
+. ++| ++++=++|+++....+
T Consensus 73 v~----------~vP---t~l~fk~G~~v~~~~g 93 (113)
T cd02989 73 IK----------VLP---TVILFKNGKTVDRIVG 93 (113)
T ss_pred Cc----------cCC---EEEEEECCEEEEEEEC
Confidence 76 344 3566668888877765
No 116
>PTZ00102 disulphide isomerase; Provisional
Probab=98.27 E-value=2.3e-06 Score=71.29 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=52.1
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
.++.++|+|| ++||+.|+.. .|.+.++.+.+++.+..+++.+..+. +...++.|+
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~-~p~~~~~a~~~~~~~~v~~~~id~~~-----------------------~~~~~~~~~ 428 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNL-EPVYNELGEKYKDNDSIIVAKMNGTA-----------------------NETPLEEFS 428 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHH-HHHHHHHHHHhccCCcEEEEEEECCC-----------------------CccchhcCC
Confidence 4677888887 9999999997 89999999888754322233233221 122355677
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
+. ++ |+.+++++++++...+.|
T Consensus 429 v~----------~~--Pt~~~~~~~~~~~~~~~G 450 (477)
T PTZ00102 429 WS----------AF--PTILFVKAGERTPIPYEG 450 (477)
T ss_pred Cc----------cc--CeEEEEECCCcceeEecC
Confidence 75 34 559999998887545553
No 117
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.26 E-value=1.4e-06 Score=59.07 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=33.0
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
++|.+||.|+ ++||++|+.. -|.|.++.++++.. +.++. +..|.
T Consensus 13 ~~klVVVdF~-a~WC~pCk~m-dp~l~ela~~~~~~-~~f~k-VDVDe 56 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQL-DDILSKTSHDLSKM-ASIYL-VDVDK 56 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHH-HHHHHHHHHHccCc-eEEEE-Eeccc
Confidence 4677777777 9999999986 79999999998422 54444 55553
No 118
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.24 E-value=5.7e-06 Score=63.88 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=64.7
Q ss_pred eehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcc
Q 045485 27 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNG 106 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~ 106 (164)
-.+.++ ++++.+++||. +.||.|... .|.++.+.+++ |+.+++ ||.|.. +++ .||-.. ++.
T Consensus 143 ~~i~~l-a~~~gL~fFy~-~~C~~C~~~-apil~~fa~~y---gi~v~~-VS~DG~----------~~p-~fp~~~-~d~ 203 (256)
T TIGR02739 143 KAIQQL-SQSYGLFFFYR-GKSPISQKM-APVIQAFAKEY---GISVIP-ISVDGT----------LIP-GLPNSR-SDS 203 (256)
T ss_pred HHHHHH-HhceeEEEEEC-CCCchhHHH-HHHHHHHHHHh---CCeEEE-EecCCC----------CCC-CCCCcc-CCh
Confidence 345666 56788888885 569999998 99999998876 899999 998862 221 122221 256
Q ss_pred hHHHHhCCccccCCCCCCCCcceeEEEEEecC-CcEEEEEee
Q 045485 107 VFTKAIGCELDLSDKPMGLGVRSRRYALLAEN-GVVKVLNLE 147 (164)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~-G~I~~~~~~ 147 (164)
..++++|+... |++||++++ +++.-+..|
T Consensus 204 gqa~~l~v~~~------------Pal~Lv~~~t~~~~pv~~G 233 (256)
T TIGR02739 204 GQAQHLGVKYF------------PALYLVNPKSQKMSPLAYG 233 (256)
T ss_pred HHHHhcCCccC------------ceEEEEECCCCcEEEEeec
Confidence 67889998633 789999998 666556553
No 119
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.21 E-value=6.1e-06 Score=60.39 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=56.5
Q ss_pred cEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCcc
Q 045485 37 KAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCEL 116 (164)
Q Consensus 37 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 116 (164)
++||+|| ++||++|... .|.|.+++.++ ..+.++- |..+.. .++..|++.
T Consensus 85 ~VVV~Fy-a~wc~~Ck~m-~~~l~~LA~~~--~~vkF~k-Vd~d~~------------------------~l~~~f~v~- 134 (175)
T cd02987 85 TVVVHIY-EPGIPGCAAL-NSSLLCLAAEY--PAVKFCK-IRASAT------------------------GASDEFDTD- 134 (175)
T ss_pred EEEEEEE-CCCCchHHHH-HHHHHHHHHHC--CCeEEEE-Eeccch------------------------hhHHhCCCC-
Confidence 6777777 9999999987 79999998887 3566666 444421 244566665
Q ss_pred ccCCCCCCCCcceeEEEEEecCCcEEEEEeecC----CceeecCHHHHHh
Q 045485 117 DLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG----GAFTFSGAEDMLK 162 (164)
Q Consensus 117 ~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~----~~~~~~~~~~~l~ 162 (164)
++| ++++=++|+++...++.. ..++..++|..|.
T Consensus 135 ---------~vP---Tlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 135 ---------ALP---ALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred ---------CCC---EEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 344 466667899988887621 2455556666654
No 120
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=4.7e-06 Score=58.88 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=51.9
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
+.+|+|.|| |.||.+|..- .|.++++..+++ ..+.+.- +. .|....++.+|+|
T Consensus 61 ~~PVlVdF~-A~WCgPCk~l-~P~l~~~~~~~~-g~~k~~k-vd-----------------------tD~~~ela~~Y~I 113 (150)
T KOG0910|consen 61 DVPVLVDFH-AEWCGPCKML-GPILEELVSEYA-GKFKLYK-VD-----------------------TDEHPELAEDYEI 113 (150)
T ss_pred CCCEEEEEe-cCcCccHhHh-hHHHHHHHHhhc-CeEEEEE-Ec-----------------------cccccchHhhcce
Confidence 678998988 9999999998 899999998883 1222222 21 3455678888998
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
.. +| + +|+=++|+.+-..++
T Consensus 114 ~a----------vP--t-vlvfknGe~~d~~vG 133 (150)
T KOG0910|consen 114 SA----------VP--T-VLVFKNGEKVDRFVG 133 (150)
T ss_pred ee----------ee--E-EEEEECCEEeeeecc
Confidence 74 33 3 555668888777765
No 121
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.20 E-value=2.3e-06 Score=58.24 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
.++.+||.|| ++||+.|+.. .|.+.++.+++++. +.++. |..|
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l-~p~~~~la~~~~~~-v~~~~-Vd~d 70 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAA-RQEFEQVAQKLSDQ-VLFVA-INCW 70 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHH-HHHHHHHHHHhcCC-eEEEE-EECC
Confidence 3455666666 9999999997 89999999998532 44455 4444
No 122
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.19 E-value=2.1e-05 Score=56.06 Aligned_cols=138 Identities=20% Similarity=0.308 Sum_probs=81.5
Q ss_pred CCCCCCCCCeeeeeecCCCc------e---eeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHH-HHhCCCcE
Q 045485 4 ISVGDKLPDATLSYFDSAGE------L---QTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAE-LKSKGVDI 73 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~------~---~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~-~~~~~v~v 73 (164)
+..|+++|..... + .|+ . ++++.+.+ .||.-||..+.|. +-....--|-+..+.+. |.....+.
T Consensus 1 ~~~~~~~p~V~v~--d-~Gel~l~~~~~~y~~W~s~~l-~GKVrviq~iAGr--~sake~N~~l~~aik~a~f~~d~yqt 74 (160)
T PF09695_consen 1 ITLGQPVPPVTVA--D-KGELILNGDKISYQPWNSAQL-PGKVRVIQHIAGR--SSAKEMNAPLIEAIKAAKFPHDKYQT 74 (160)
T ss_pred CcCCCcCCceEec--C-CceEEEcCCcccccccCcccc-CCCEEEEEEeccC--CchhHhhHHHHHHHHHcCCCccceeE
Confidence 4679999998742 1 222 1 13566677 6886666665332 11111101222333222 33445778
Q ss_pred EEEEecCC-HHH----HHHHHHHh--CCCCce-EEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEE
Q 045485 74 VACISVND-AFV----MKAWKENL--GINDEV-LLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLN 145 (164)
Q Consensus 74 i~~is~d~-~~~----~~~~~~~~--~~~~~~-~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~ 145 (164)
.+||..|+ +.- ++..+++. ..+ + .++.|.++.+.++|++... ..+.+|+|++|+|++..
T Consensus 75 ttIiN~dDAi~gt~~fVrss~e~~kk~~p--~s~~vlD~~G~~~~aW~L~~~-----------~SaiiVlDK~G~V~F~k 141 (160)
T PF09695_consen 75 TTIINLDDAIWGTGGFVRSSAEDSKKEFP--WSQFVLDSNGVVRKAWQLQEE-----------SSAIIVLDKQGKVQFVK 141 (160)
T ss_pred EEEEecccccccchHHHHHHHHHhhhhCC--CcEEEEcCCCceeccccCCCC-----------CceEEEEcCCccEEEEE
Confidence 88777753 111 22233322 234 4 4788999999999999743 15589999999999999
Q ss_pred eecCCceeecCHHHHHhh
Q 045485 146 LEEGGAFTFSGAEDMLKA 163 (164)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~ 163 (164)
-+ ..+..+++++++.
T Consensus 142 ~G---~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 142 EG---ALSPAEVQQVIAL 156 (160)
T ss_pred CC---CCCHHHHHHHHHH
Confidence 85 4556666766653
No 123
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=1.8e-05 Score=57.71 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=100.9
Q ss_pred cCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCce
Q 045485 19 DSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEV 98 (164)
Q Consensus 19 ~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~ 98 (164)
+..|+. +.+.++.+.+..++.|.+=.-|-.|+.+ ...|.++.+-+++.|+..|+ |.+.+......|.++.... =
T Consensus 36 ~~rg~~--vp~~~L~~~~~avV~~vRrpgCvlCR~~-aadLa~l~~~ld~~Gv~Li~-vg~g~~~~~~~f~~q~~f~--g 109 (197)
T KOG4498|consen 36 DSRGES--VPVTSLFKERSAVVAFVRRPGCVLCREE-AADLASLKDLLDELGVVLIA-VGPGSHVQFEDFWDQTYFS--G 109 (197)
T ss_pred hhcCce--eehHHhhhcCCeEEEEeccCcEEEeHHH-HHHHHHHHHHHHHhCCEEEE-EeccceeecchhhcccCcc--e
Confidence 334666 8998987777888999988899999997 99999998888899999999 6665556666777776666 6
Q ss_pred EEEEeCcchHHHHhCCcccc-C---C---------------C-CCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHH
Q 045485 99 LLLSDGNGVFTKAIGCELDL-S---D---------------K-PMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAE 158 (164)
Q Consensus 99 ~~l~D~~~~~~~~~gv~~~~-~---~---------------~-~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~ 158 (164)
.++.|++..+.+.++..... + . + .-+-+..+...+++.++++|.+.++..+ +-+-.+.+
T Consensus 110 evylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~-~gD~~~i~ 188 (197)
T KOG4498|consen 110 EVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKE-TGDHVPID 188 (197)
T ss_pred eEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCC-CCCCcCHH
Confidence 88999988887777654310 0 0 0 0011234467999999999999999864 23444677
Q ss_pred HHHhh
Q 045485 159 DMLKA 163 (164)
Q Consensus 159 ~~l~~ 163 (164)
.+|+.
T Consensus 189 ~Vl~v 193 (197)
T KOG4498|consen 189 SVLQV 193 (197)
T ss_pred HHHHH
Confidence 77664
No 124
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.14 E-value=5e-06 Score=56.54 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=26.9
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHh
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKS 68 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~ 68 (164)
+++++|.|| ++||+.|+.. .+.+.++.+++++
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~-~~~~~~la~~~~~ 50 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAF-APTWKKLARDLRK 50 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHH-hHHHHHHHHHHHh
Confidence 356777777 9999999997 8999999998864
No 125
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.08 E-value=8.1e-06 Score=53.72 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=27.3
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHh
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKS 68 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~ 68 (164)
++.++|+|| ++||+.|+.. .+.+.++.+.+++
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~-~~~~~~~~~~~~~ 49 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKAL-APIYEELAEKLKG 49 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHH-hhHHHHHHHHhcC
Confidence 467777777 9999999997 9999999998864
No 126
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.08 E-value=1.4e-05 Score=50.46 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=25.6
Q ss_pred EEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEE
Q 045485 39 ILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVA 75 (164)
Q Consensus 39 vl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~ 75 (164)
|..|| ++|||.|... .+.+.++.+++. ..+.++-
T Consensus 3 v~~f~-~~~C~~C~~~-~~~l~~l~~~~~-~~~~~~~ 36 (82)
T TIGR00411 3 IELFT-SPTCPYCPAA-KRVVEEVAKEMG-DAVEVEY 36 (82)
T ss_pred EEEEE-CCCCcchHHH-HHHHHHHHHHhc-CceEEEE
Confidence 44555 9999999997 899999988875 2355455
No 127
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.07 E-value=1.3e-05 Score=59.43 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=57.3
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
++|||.|| ++||+.|... .+.|.+++.++ ..+.++- |..+.. ...|++.
T Consensus 103 ~~VVV~Fy-a~wc~~C~~m-~~~l~~LA~k~--~~vkFvk-I~ad~~--------------------------~~~~~i~ 151 (192)
T cd02988 103 TWVVVHLY-KDGIPLCRLL-NQHLSELARKF--PDTKFVK-IISTQC--------------------------IPNYPDK 151 (192)
T ss_pred CEEEEEEE-CCCCchHHHH-HHHHHHHHHHC--CCCEEEE-EEhHHh--------------------------HhhCCCC
Confidence 46777777 9999999997 89999999988 4577776 444310 1345554
Q ss_pred cccCCCCCCCCcceeEEEEEecCCcEEEEEeec----CCceeecCHHHHHh
Q 045485 116 LDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE----GGAFTFSGAEDMLK 162 (164)
Q Consensus 116 ~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~----~~~~~~~~~~~~l~ 162 (164)
++| ++++=++|+++...++. +..++..+++.+|.
T Consensus 152 ----------~lP---Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 152 ----------NLP---TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred ----------CCC---EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 344 46666899999888873 12455556666664
No 128
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.06 E-value=3.1e-05 Score=52.40 Aligned_cols=75 Identities=9% Similarity=0.049 Sum_probs=51.7
Q ss_pred CCCcEEEEEecCCC--CcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHH
Q 045485 34 SNKKAILFAVPGAF--TPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKA 111 (164)
Q Consensus 34 ~g~~vvl~f~~~~~--cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 111 (164)
.|+++||.|+ ++| ||.|..- .|.|.++.+++.++ +.++- +.. |.+..++.+
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i-~P~leela~e~~~~-v~f~k-Vdi-----------------------d~~~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDV-AVVLPELLKAFPGR-FRAAV-VGR-----------------------ADEQALAAR 78 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhh-HhHHHHHHHHCCCc-EEEEE-EEC-----------------------CCCHHHHHH
Confidence 4566776666 886 9999997 89999999988522 33333 322 223467778
Q ss_pred hCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeec
Q 045485 112 IGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEE 148 (164)
Q Consensus 112 ~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~ 148 (164)
|+|. ++| ++++=++|+++....|.
T Consensus 79 f~V~----------sIP---Tli~fkdGk~v~~~~G~ 102 (111)
T cd02965 79 FGVL----------RTP---ALLFFRDGRYVGVLAGI 102 (111)
T ss_pred cCCC----------cCC---EEEEEECCEEEEEEeCc
Confidence 8886 455 46777789998888763
No 129
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.01 E-value=4.2e-05 Score=57.78 Aligned_cols=128 Identities=11% Similarity=0.140 Sum_probs=84.9
Q ss_pred CCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCC---cEEEEEecC-CHH
Q 045485 8 DKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGV---DIVACISVN-DAF 83 (164)
Q Consensus 8 ~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v---~vi~~is~d-~~~ 83 (164)
.+.|..++ +|. --+.+. .|+.+||-+- -.+|..|..+ +..|..+..+|+..|. .++. |+.- ...
T Consensus 8 ~~~p~W~i-----~~~---~pm~~~-~G~VtvVALL-~asc~~c~~q-a~~le~Lr~kL~~~g~~~I~f~v-VN~~~~~s 75 (238)
T PF04592_consen 8 KPPPPWKI-----GGQ---DPMLNS-LGHVTVVALL-QASCYFCLLQ-ASRLEDLREKLENEGLSNISFMV-VNHQGEHS 75 (238)
T ss_pred CCCCCceE-----CCc---hHhhhc-CCcEEeeeeh-hhhhHHHHHH-HHHHHHHHHHHHHCCCCceEEEE-EcCCCcch
Confidence 34566663 343 456677 5886666666 4579999998 9999999999998875 4444 3332 222
Q ss_pred HHH--HHHHHhCCCCceEEEE-e-CcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHH
Q 045485 84 VMK--AWKENLGINDEVLLLS-D-GNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAED 159 (164)
Q Consensus 84 ~~~--~~~~~~~~~~~~~~l~-D-~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~ 159 (164)
... .+.++..-. |+|+. | .+..++..++-..+ -+||+|+-|++.|.-.-+-+....+.+++
T Consensus 76 ~~~~~~l~~r~~~~--ipVyqq~~~q~dvW~~L~G~kd-------------D~~iyDRCGrL~~~i~~P~S~l~~~~ve~ 140 (238)
T PF04592_consen 76 RLKYWELKRRVSEH--IPVYQQDENQPDVWELLNGSKD-------------DFLIYDRCGRLTYHIPLPYSFLQFPYVEA 140 (238)
T ss_pred hHHHHHHHHhCCCC--CceecCCccccCHHHHhCCCcC-------------cEEEEeccCcEEEEecCcHHHhcCHHHHH
Confidence 222 222333334 99996 4 46889998887632 28999999999997765444455556666
Q ss_pred HHh
Q 045485 160 MLK 162 (164)
Q Consensus 160 ~l~ 162 (164)
+|.
T Consensus 141 Ai~ 143 (238)
T PF04592_consen 141 AIK 143 (238)
T ss_pred HHH
Confidence 554
No 130
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.98 E-value=7.2e-06 Score=53.79 Aligned_cols=48 Identities=25% Similarity=0.469 Sum_probs=37.7
Q ss_pred eehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec
Q 045485 27 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV 79 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~ 79 (164)
.....+ +++++++.|| +.|||.|... .|.+.++.+++.. .+.++. +..
T Consensus 25 ~~~~~~-~~~~~~v~f~-~~~C~~C~~~-~~~l~~~~~~~~~-~~~~~~-i~~ 72 (127)
T COG0526 25 LSLSEL-KGKPVLVDFW-APWCPPCRAE-APLLEELAEEYGG-DVEVVA-VNV 72 (127)
T ss_pred eehhhc-CCceEEEEEE-cCcCHHHHhh-chhHHHHHHHhcC-CcEEEE-EEC
Confidence 345555 4777888887 9999999997 9999999998864 577777 555
No 131
>PTZ00102 disulphide isomerase; Provisional
Probab=97.93 E-value=3.2e-05 Score=64.46 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=27.7
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKG 70 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~ 70 (164)
+++.++|.|| ++||+.|+.. .|.+.++...+++.+
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~-~p~~~~~a~~~~~~~ 82 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRL-APEYKKAAKMLKEKK 82 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHh-hHHHHHHHHHHHhcC
Confidence 3556666666 9999999997 899999888886544
No 132
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.92 E-value=1.5e-05 Score=66.45 Aligned_cols=44 Identities=14% Similarity=0.372 Sum_probs=35.5
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
++++||.|| ++||+.|+.. .|.|.++.++++..++.++. |..|.
T Consensus 371 ~k~VLV~Fy-ApWC~~Ck~m-~P~~eelA~~~~~~~v~~~k-VdvD~ 414 (463)
T TIGR00424 371 KEAWLVVLY-APWCPFCQAM-EASYLELAEKLAGSGVKVAK-FRADG 414 (463)
T ss_pred CCeEEEEEE-CCCChHHHHH-HHHHHHHHHHhccCCcEEEE-EECCC
Confidence 566777777 9999999997 89999999999766777666 66653
No 133
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.88 E-value=4.6e-05 Score=62.97 Aligned_cols=40 Identities=20% Similarity=0.398 Sum_probs=30.6
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCC--CcEEE
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKG--VDIVA 75 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~--v~vi~ 75 (164)
+++.++|.|| ++||+.|... .|.+.++++.+++.+ +.++.
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~-~~~~~~~a~~~~~~~~~v~~~~ 58 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSL-APEYEKAADELKKKGPPIKLAK 58 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhh-hHHHHHHHHHHhhcCCceEEEE
Confidence 3556666666 9999999997 899999998887665 44444
No 134
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.81 E-value=0.0001 Score=42.78 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=32.8
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHH
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAW 88 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~ 88 (164)
++|| ++||+.|... .+.++++ +....++.++. ++.+.......+
T Consensus 2 ~~~~-~~~c~~c~~~-~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~ 45 (69)
T cd01659 2 VLFY-APWCPFCQAL-RPVLAEL--ALLNKGVKFEA-VDVDEDPALEKE 45 (69)
T ss_pred EEEE-CCCChhHHhh-hhHHHHH--HhhCCCcEEEE-EEcCCChHHhhH
Confidence 4555 8999999997 8888888 45567888888 777765544443
No 135
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.76 E-value=0.00013 Score=55.01 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=46.4
Q ss_pred CCCcEEEEEecC---CCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHH
Q 045485 34 SNKKAILFAVPG---AFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTK 110 (164)
Q Consensus 34 ~g~~vvl~f~~~---~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (164)
++...++.|+ + +|||+|... .|.+.++.+++ .++.+.. +..|.. .+..+++
T Consensus 18 ~~~~~i~~f~-~~~a~wC~~C~~~-~p~l~~la~~~--~~~~i~~-v~vd~~---------------------~~~~l~~ 71 (215)
T TIGR02187 18 KNPVEIVVFT-DNDKEGCQYCKET-EQLLEELSEVS--PKLKLEI-YDFDTP---------------------EDKEEAE 71 (215)
T ss_pred CCCeEEEEEc-CCCCCCCCchHHH-HHHHHHHHhhC--CCceEEE-EecCCc---------------------ccHHHHH
Confidence 4444555565 5 999999997 88888888777 3444333 444432 2356778
Q ss_pred HhCCccccCCCCCCCCcceeEEEEEecCCcEE-EEEee
Q 045485 111 AIGCELDLSDKPMGLGVRSRRYALLAENGVVK-VLNLE 147 (164)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~-~~~~~ 147 (164)
+|++. ++| +.++++ +|+.+ ..+.+
T Consensus 72 ~~~V~----------~~P--t~~~f~-~g~~~~~~~~G 96 (215)
T TIGR02187 72 KYGVE----------RVP--TTIILE-EGKDGGIRYTG 96 (215)
T ss_pred HcCCC----------ccC--EEEEEe-CCeeeEEEEee
Confidence 88886 344 355554 56654 35554
No 136
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.76 E-value=0.00016 Score=48.83 Aligned_cols=77 Identities=6% Similarity=0.006 Sum_probs=43.8
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhH---HHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHH
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGF---VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTK 110 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l---~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (164)
++|+++|+|. ++||+.|... ...+ .++.+.+. ...-.+. +..++++ ...+++
T Consensus 16 ~~K~llv~~~-~~~c~~c~~~-~~~vl~~~~v~~~l~-~~~v~~~-~d~~~~e---------------------~~~~~~ 70 (114)
T cd02958 16 EKKWLLVYLQ-SEDEFDSQVL-NRDLWSNESVKEFIR-ENFIFWQ-CDIDSSE---------------------GQRFLQ 70 (114)
T ss_pred hCceEEEEEe-cCCcchHHHH-HHHHcCCHHHHHHHH-hCEEEEE-ecCCCcc---------------------HHHHHH
Confidence 4677777776 9999999863 2221 11222222 1221222 2222211 124566
Q ss_pred HhCCccccCCCCCCCCcceeEEEEEec-CCcEEEEEee
Q 045485 111 AIGCELDLSDKPMGLGVRSRRYALLAE-NGVVKVLNLE 147 (164)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~p~~~lid~-~G~I~~~~~~ 147 (164)
.|++. ++ |+.++||+ +|++++...|
T Consensus 71 ~~~~~----------~~--P~~~~i~~~~g~~l~~~~G 96 (114)
T cd02958 71 SYKVD----------KY--PHIAIIDPRTGEVLKVWSG 96 (114)
T ss_pred HhCcc----------CC--CeEEEEeCccCcEeEEEcC
Confidence 67765 34 55999999 8999998775
No 137
>PLN02309 5'-adenylylsulfate reductase
Probab=97.72 E-value=5.4e-05 Score=63.10 Aligned_cols=43 Identities=14% Similarity=0.350 Sum_probs=34.6
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
+++++|.|| ++||+.|+.. .|.+.++.+++...++.+.. +..|
T Consensus 365 ~k~vlV~Fy-ApWC~~Cq~m-~p~~e~LA~~~~~~~V~f~k-VD~d 407 (457)
T PLN02309 365 KEPWLVVLY-APWCPFCQAM-EASYEELAEKLAGSGVKVAK-FRAD 407 (457)
T ss_pred CCeEEEEEE-CCCChHHHHH-HHHHHHHHHHhccCCeEEEE-EECC
Confidence 566777777 9999999997 89999999998766776666 6555
No 138
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.70 E-value=0.00012 Score=56.62 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=76.3
Q ss_pred CCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHH-hC--CCcEEEEEecCCHHHH
Q 045485 9 KLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELK-SK--GVDIVACISVNDAFVM 85 (164)
Q Consensus 9 ~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~-~~--~v~vi~~is~d~~~~~ 85 (164)
..|+|. ..+.+|+. .++.+..+|+..||..|...|--.|..++.. ....+|. .. .++++- |+.... .+
T Consensus 100 yFP~l~--g~tL~g~~--~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~---p~~~~~~~~~~~~~q~v~-In~~e~-~~ 170 (252)
T PF05176_consen 100 YFPNLQ--GKTLAGNK--VDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS---PFLEDFLQEPYGRVQIVE-INLIEN-WL 170 (252)
T ss_pred cCCCCc--cccCCCCC--cccccccCCceEEEEEeehHHHHHHHHHHhh---HHHHHHhhCCCCceEEEE-EecchH-HH
Confidence 357777 45667776 7887777898655555545555444443222 2334443 23 577777 444321 12
Q ss_pred HHHHHHh-------CCCC----ceEEEEeC--cchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCce
Q 045485 86 KAWKENL-------GIND----EVLLLSDG--NGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAF 152 (164)
Q Consensus 86 ~~~~~~~-------~~~~----~~~~l~D~--~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~ 152 (164)
+.|+.+. .++. .|-+..+. ...+-+++|+... -+.+ +||||.+|+|+++-.|..++.
T Consensus 171 k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~--------~~GY--vyLVD~~grIRWagsG~At~~ 240 (252)
T PF05176_consen 171 KSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNS--------YVGY--VYLVDPNGRIRWAGSGPATPE 240 (252)
T ss_pred HHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCC--------CcCe--EEEECCCCeEEeCccCCCCHH
Confidence 3333221 2221 24444433 4678899999754 2334 999999999999999765443
Q ss_pred eecCHHHHH
Q 045485 153 TFSGAEDML 161 (164)
Q Consensus 153 ~~~~~~~~l 161 (164)
..+.+-+++
T Consensus 241 E~~~L~k~~ 249 (252)
T PF05176_consen 241 ELESLWKCV 249 (252)
T ss_pred HHHHHHHHH
Confidence 333333333
No 139
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.68 E-value=6e-05 Score=52.45 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=16.6
Q ss_pred CCCcEEEEEecCCCCcCCCcC
Q 045485 34 SNKKAILFAVPGAFTPTCSQK 54 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~ 54 (164)
++|+++|+|. +.||+.|...
T Consensus 22 ~~Kpvmv~f~-sdwC~~Ck~l 41 (130)
T cd02960 22 SNKPLMVIHH-LEDCPHSQAL 41 (130)
T ss_pred CCCeEEEEEe-CCcCHhHHHH
Confidence 5788888876 9999999874
No 140
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.64 E-value=0.00017 Score=45.88 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=37.3
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHH--hHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVE--KSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~--~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
++|+++|+|. +.||+.|... -..+-. ...++-.+++..+- +..+..+....+.. .++| ..++.||
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l-~~~~~~~~~v~~~~~~~fv~v~-vd~~~~~~~~~~~~-~~~P--~~~~ldp 82 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKL-EREVFSDPEVQEALNKNFVLVK-VDVDDEDPNAQFDR-QGYP--TFFFLDP 82 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHH-HHHTTTSHHHHHHHHHCSEEEE-EETTTHHHHHHHHH-CSSS--EEEEEET
T ss_pred cCCCEEEEEE-CCCCHhHHHH-HHHHcCCHHHHHHHHCCEEEEE-EEcCCCChhHHhCC-ccCC--EEEEeCC
Confidence 4788888886 9999999874 344311 12232225665566 55565554433322 5555 5555553
No 141
>PTZ00062 glutaredoxin; Provisional
Probab=97.63 E-value=0.00018 Score=53.92 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEe
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACIS 78 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is 78 (164)
+.+|++|| ++|||.|... .+-+.++.+++ ..+.++- |.
T Consensus 18 g~~vl~f~-a~w~~~C~~m-~~vl~~l~~~~--~~~~F~~-V~ 55 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQL-MDVCNALVEDF--PSLEFYV-VN 55 (204)
T ss_pred CcEEEEEe-CCCCcchHHH-HHHHHHHHHHC--CCcEEEE-Ec
Confidence 33555555 9999999985 89999999888 4566666 44
No 142
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00021 Score=55.89 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=32.4
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
.++||+.|| ++||++|..- +|.+.++..++ +|--.++-|.+|
T Consensus 43 ~~PVlV~fW-ap~~~~c~qL-~p~Lekla~~~--~G~f~LakvN~D 84 (304)
T COG3118 43 EVPVLVDFW-APWCGPCKQL-TPTLEKLAAEY--KGKFKLAKVNCD 84 (304)
T ss_pred CCCeEEEec-CCCCchHHHH-HHHHHHHHHHh--CCceEEEEecCC
Confidence 468988888 9999999997 99999999988 454334424443
No 143
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.36 E-value=0.00033 Score=44.01 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=21.5
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHH
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELK 67 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~ 67 (164)
|.|| ++|||.|... .|.+.++.+++.
T Consensus 3 i~~~-a~~C~~C~~~-~~~~~~~~~e~~ 28 (76)
T TIGR00412 3 IQIY-GTGCANCQMT-EKNVKKAVEELG 28 (76)
T ss_pred EEEE-CCCCcCHHHH-HHHHHHHHHHcC
Confidence 5666 8999999997 888888888763
No 144
>smart00594 UAS UAS domain.
Probab=97.30 E-value=0.0022 Score=43.99 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=16.1
Q ss_pred CCCcEEEEEecCCCCcCCCcC
Q 045485 34 SNKKAILFAVPGAFTPTCSQK 54 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~ 54 (164)
.+|.++|+|. +.||+.|..-
T Consensus 26 ~~K~~lv~~~-~~~c~~c~~~ 45 (122)
T smart00594 26 QRRLLWLYLH-SQDSPDSQVF 45 (122)
T ss_pred hcCCEEEEEe-CCCCchHHHH
Confidence 4677777777 9999999864
No 145
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.28 E-value=0.00013 Score=50.70 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=41.0
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA-FVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~-~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
.+..+++|. .+|||.|... +|.|.++.+.. .++.+=. ++.|.. +.+.+|+. .|
T Consensus 41 ~~~~ilvi~-e~WCgD~~~~-vP~l~kiae~~--p~i~~~~-i~rd~~~el~~~~lt---------------------~g 94 (129)
T PF14595_consen 41 KPYNILVIT-ETWCGDCARN-VPVLAKIAEAN--PNIEVRI-ILRDENKELMDQYLT---------------------NG 94 (129)
T ss_dssp S-EEEEEE---TT-HHHHHH-HHHHHHHHHH---TTEEEEE-E-HHHHHHHTTTTTT----------------------S
T ss_pred CCcEEEEEE-CCCchhHHHH-HHHHHHHHHhC--CCCeEEE-EEecCChhHHHHHHh---------------------CC
Confidence 344555555 9999999997 99999998865 3554333 555532 22222221 11
Q ss_pred CccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 114 CELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 114 v~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
.. .+ |..+++|++|+.+..|..
T Consensus 95 ~~----------~I--P~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 95 GR----------SI--PTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp S------------S--SEEEEE-TT--EEEEEES
T ss_pred Ce----------ec--CEEEEEcCCCCEeEEEcC
Confidence 21 23 669999999999988875
No 146
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0011 Score=55.64 Aligned_cols=58 Identities=12% Similarity=0.244 Sum_probs=37.5
Q ss_pred CCCc-EEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 34 SNKK-AILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 34 ~g~~-vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.+.. +++-|| +.||..|.+- .|.+.+.+..+++.|=.+-. .-.|-++. ..+..+++++
T Consensus 40 ~~~~~vlVeFY-APWCghck~L-aPey~kAA~~Lke~~s~i~L-akVDat~~-~~~~~~y~v~ 98 (493)
T KOG0190|consen 40 NGHEFVLVEFY-APWCGHCKAL-APEYEKAATELKEEGSPVKL-AKVDATEE-SDLASKYEVR 98 (493)
T ss_pred ccCceEEEEEE-chhhhhhhhh-CcHHHHHHHHhhccCCCcee-EEeecchh-hhhHhhhcCC
Confidence 3444 445555 9999999996 99999999999876422222 33454433 4555555444
No 147
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.21 E-value=0.00057 Score=41.47 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=21.7
Q ss_pred EEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEE
Q 045485 39 ILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVA 75 (164)
Q Consensus 39 vl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~ 75 (164)
|.+|+ ++|||+|... .+.++++.+.. .++.+.-
T Consensus 3 v~~f~-~~~C~~C~~~-~~~l~~l~~~~--~~i~~~~ 35 (67)
T cd02973 3 IEVFV-SPTCPYCPDA-VQAANRIAALN--PNISAEM 35 (67)
T ss_pred EEEEE-CCCCCCcHHH-HHHHHHHHHhC--CceEEEE
Confidence 44555 8999999986 77777775432 3455444
No 148
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.10 E-value=0.0021 Score=39.04 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=28.1
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCCC
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLGIN 95 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~~ 95 (164)
.+|.++|||.|... .+.| .+.++.+.. +..+ .++...++++.++..
T Consensus 3 ~lf~~~~C~~C~~~-~~~l-------~~~~i~~~~-vdi~~~~~~~~~~~~~~~~~ 49 (74)
T TIGR02196 3 KVYTTPWCPPCKKA-KEYL-------TSKGIAFEE-IDVEKDSAAREEVLKVLGQR 49 (74)
T ss_pred EEEcCCCChhHHHH-HHHH-------HHCCCeEEE-EeccCCHHHHHHHHHHhCCC
Confidence 44559999999975 4444 335777666 5554 344445566656543
No 149
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.01 E-value=0.001 Score=43.61 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEE
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVA 75 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~ 75 (164)
++++++.|+ +.||+.|... .+.+.+++++++.+ +.++.
T Consensus 12 ~~~~~~~f~-~~~~~~~~~~-~~~~~~vA~~~~~~-v~f~~ 49 (103)
T cd02982 12 GKPLLVLFY-NKDDSESEEL-RERFKEVAKKFKGK-LLFVV 49 (103)
T ss_pred CCCEEEEEE-cCChhhHHHH-HHHHHHHHHHhCCe-EEEEE
Confidence 677777777 8999999997 89999999999632 44444
No 150
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.87 E-value=0.0011 Score=54.80 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.8
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhC--CCcEEE
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSK--GVDIVA 75 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~--~v~vi~ 75 (164)
++.++|.|| ++||+.|... .|.+.++.+.++.. ++.+..
T Consensus 364 ~~~vlv~f~-a~wC~~C~~~-~p~~~~~~~~~~~~~~~i~~~~ 404 (462)
T TIGR01130 364 TKDVLVEFY-APWCGHCKNL-APIYEELAEKYKDAESDVVIAK 404 (462)
T ss_pred CCeEEEEEE-CCCCHhHHHH-HHHHHHHHHHhhcCCCcEEEEE
Confidence 566777777 9999999997 89999999999752 455444
No 151
>PHA02125 thioredoxin-like protein
Probab=96.77 E-value=0.0025 Score=39.78 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=14.9
Q ss_pred EEEEecCCCCcCCCcCchhhHH
Q 045485 39 ILFAVPGAFTPTCSQKHLPGFV 60 (164)
Q Consensus 39 vl~f~~~~~cp~C~~~~l~~l~ 60 (164)
+++|+ ++||++|+.- .|.|.
T Consensus 2 iv~f~-a~wC~~Ck~~-~~~l~ 21 (75)
T PHA02125 2 IYLFG-AEWCANCKMV-KPMLA 21 (75)
T ss_pred EEEEE-CCCCHhHHHH-HHHHH
Confidence 45555 9999999975 66654
No 152
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.61 E-value=0.0051 Score=39.89 Aligned_cols=35 Identities=6% Similarity=-0.021 Sum_probs=23.2
Q ss_pred hhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHH
Q 045485 29 VSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAEL 66 (164)
Q Consensus 29 l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~ 66 (164)
+.++ + +++-|.+|.+.|||+|..- .+.+.++.+++
T Consensus 7 ~~~l-~-~pv~i~~F~~~~C~~C~~~-~~~~~~l~~~~ 41 (89)
T cd03026 7 IRRL-N-GPINFETYVSLSCHNCPDV-VQALNLMAVLN 41 (89)
T ss_pred HHhc-C-CCEEEEEEECCCCCCcHHH-HHHHHHHHHHC
Confidence 3455 4 4566666669999999975 56666655443
No 153
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0019 Score=49.42 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=29.5
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEE
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVA 75 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~ 75 (164)
++|.+++.|. ++||.+|.+- .|.|..+..+| .+..++-
T Consensus 20 g~k~v~Vdft-a~wCGPCk~I-aP~Fs~lankY--p~aVFlk 57 (288)
T KOG0908|consen 20 GGKLVVVDFT-ASWCGPCKRI-APIFSDLANKY--PGAVFLK 57 (288)
T ss_pred CceEEEEEEE-ecccchHHhh-hhHHHHhhhhC--cccEEEE
Confidence 4566666665 9999999997 99999999998 5554444
No 154
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.41 E-value=0.0088 Score=44.98 Aligned_cols=28 Identities=7% Similarity=0.008 Sum_probs=18.4
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhH
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKS 63 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~ 63 (164)
.++++|..|+++|||+|... .+.++++.
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~-~~~l~~l~ 159 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYA-VLMAHKFA 159 (215)
T ss_pred CCCcEEEEEECCCCCCcHHH-HHHHHHHH
Confidence 34566664559999999975 55444443
No 155
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.41 E-value=0.017 Score=39.41 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=25.4
Q ss_pred hhhhcCC-CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCC
Q 045485 29 VSDLTSN-KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKG 70 (164)
Q Consensus 29 l~d~~~g-~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~ 70 (164)
+.+..++ +.++|-|+ ++| |.|-. | |.+.++..++....
T Consensus 11 F~~~v~~~~~vlV~F~-A~~-Pwc~k-~-~~~~~LA~e~~~aa 49 (116)
T cd03007 11 FYKVIPKFKYSLVKFD-TAY-PYGEK-H-EAFTRLAESSASAT 49 (116)
T ss_pred HHHHHhcCCcEEEEEe-CCC-CCCCC-h-HHHHHHHHHHHhhc
Confidence 3344333 45666666 988 88885 4 99999998886433
No 156
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.08 E-value=0.013 Score=35.98 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=21.9
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHH
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWK 89 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~ 89 (164)
..|| ++|||.|... .+.|. +.++..-. +..+......+++
T Consensus 3 ~ly~-~~~C~~C~~~-~~~L~-------~~~~~~~~-idi~~~~~~~~~~ 42 (77)
T TIGR02200 3 TVYG-TTWCGYCAQL-MRTLD-------KLGAAYEW-VDIEEDEGAADRV 42 (77)
T ss_pred EEEE-CCCChhHHHH-HHHHH-------HcCCceEE-EeCcCCHhHHHHH
Confidence 4454 8999999985 44443 34555444 4444333333333
No 157
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.014 Score=47.72 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEe
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSD 103 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D 103 (164)
++..++.|| ++||..|... .|.+.++...++ + ++.+...|. .+++...+++++. .||.+.-
T Consensus 47 ~~~~~v~fy-apwc~~c~~l-~~~~~~~~~~l~--~--~~~~~~vd~-~~~~~~~~~y~i~-gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFY-APWCGHCKKL-APTYKKLAKALK--G--KVKIGAVDC-DEHKDLCEKYGIQ-GFPTLKV 107 (383)
T ss_pred CCceEEEEE-CCCCcchhhh-chHHHHHHHHhc--C--ceEEEEeCc-hhhHHHHHhcCCc-cCcEEEE
Confidence 456777777 9999999998 999999988885 3 233234444 4566778888876 4555543
No 158
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=95.87 E-value=0.011 Score=40.35 Aligned_cols=95 Identities=15% Similarity=0.192 Sum_probs=57.3
Q ss_pred hhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchH
Q 045485 29 VSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVF 108 (164)
Q Consensus 29 l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 108 (164)
|+++.-.+.+||+|-+..--+.-..+ +..|+.....+.++.+.++. +..+...... ..++ .+.-..+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q-~~~L~~~~~~l~eRdi~v~~-i~~~~~~~~~-----~~~~------~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQ-LEELQNNRCGLDERDIVVIV-ITGDGARSPG-----KPLS------PEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHH-HHHHHhhhhccccCceEEEE-EeCCcccccc-----CcCC------HHHHHHH
Confidence 56663234678888665545555555 66666666778888888777 5444322111 0011 1112566
Q ss_pred HHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 109 TKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 109 ~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
.+.|++... . -+.+||++||.+...+..
T Consensus 70 r~~l~~~~~---------~--f~~vLiGKDG~vK~r~~~ 97 (118)
T PF13778_consen 70 RKRLRIPPG---------G--FTVVLIGKDGGVKLRWPE 97 (118)
T ss_pred HHHhCCCCC---------c--eEEEEEeCCCcEEEecCC
Confidence 777777532 1 238999999999888663
No 159
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.85 E-value=0.017 Score=44.15 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEE
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVA 75 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~ 75 (164)
|+.+|++|. -..||+|++. -+.+.++ .+.|+.+..
T Consensus 107 ~k~~I~vFt-Dp~CpyCkkl-~~~l~~~----~~~~v~v~~ 141 (232)
T PRK10877 107 EKHVITVFT-DITCGYCHKL-HEQMKDY----NALGITVRY 141 (232)
T ss_pred CCEEEEEEE-CCCChHHHHH-HHHHHHH----hcCCeEEEE
Confidence 555666665 8899999986 4555544 335676644
No 160
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.73 E-value=0.03 Score=43.26 Aligned_cols=27 Identities=11% Similarity=0.056 Sum_probs=18.4
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhH
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKS 63 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~ 63 (164)
++.+|++|+ -..||+|++. -.++.++.
T Consensus 117 ak~~I~vFt-Dp~CpyC~kl-~~~l~~~~ 143 (251)
T PRK11657 117 APRIVYVFA-DPNCPYCKQF-WQQARPWV 143 (251)
T ss_pred CCeEEEEEE-CCCChhHHHH-HHHHHHHh
Confidence 455566665 7889999987 46655543
No 161
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.014 Score=49.09 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSK 69 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~ 69 (164)
.+|-|+|-|+ +.||+.|.+- .|.++++.+.+++.
T Consensus 383 e~KdVLvEfy-APWCgHCk~l-aP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKAL-APIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEc-Ccccchhhhh-hhHHHHHHHHhcCC
Confidence 4677888888 9999999998 89999999999864
No 162
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.021 Score=38.97 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=35.9
Q ss_pred ehhhhcCCCcEEEEEecC-------CCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 28 TVSDLTSNKKAILFAVPG-------AFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 28 ~l~d~~~g~~vvl~f~~~-------~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
.++++.+|+.+.++|.-+ +|||.|.+- .|-+.+..+.. ..++.+|- +...+
T Consensus 18 ~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~A-EPvi~~alk~a-p~~~~~v~-v~VG~ 75 (128)
T KOG3425|consen 18 TLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAA-EPVINEALKHA-PEDVHFVH-VYVGN 75 (128)
T ss_pred HHHHHhCCceEEEEEecccCCCCCCcCCchHHHh-hHHHHHHHHhC-CCceEEEE-EEecC
Confidence 455665677777777633 699999996 89988887743 46787777 44443
No 163
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.24 E-value=0.027 Score=35.27 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=26.8
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHH-HHhCC
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWK-ENLGI 94 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~-~~~~~ 94 (164)
+.|+ ++|||.|... .+.+.++. .. ..+.++- +..+ ...+.++++ +..+.
T Consensus 2 ~~f~-~~~Cp~C~~~-~~~L~~~~--i~-~~~~~~~-v~~~~~~~~~~~~l~~~~g~ 52 (84)
T TIGR02180 2 VVFS-KSYCPYCKKA-KEILAKLN--VK-PAYEVVE-LDQLSNGSEIQDYLEEITGQ 52 (84)
T ss_pred EEEE-CCCChhHHHH-HHHHHHcC--CC-CCCEEEE-eeCCCChHHHHHHHHHHhCC
Confidence 4454 8999999986 66666553 11 1245555 4443 334444443 33443
No 164
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.13 E-value=0.014 Score=39.98 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=29.5
Q ss_pred CCCcEEEEEec------CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 34 SNKKAILFAVP------GAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 34 ~g~~vvl~f~~------~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
+++++.|+|+- -+|||.|+.. .|.+++...... .+..+|- +...+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~a-ep~v~~~f~~~~-~~~~lv~-v~VG~ 68 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAA-EPVVEKAFKKAP-ENARLVY-VEVGD 68 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHH-HHHHHHHHHH-S-TTEEEEE-EE---
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHH-HHHHHHHHHhCC-CCceEEE-EEcCC
Confidence 45677788873 2699999996 899998877743 4666666 55544
No 165
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.95 E-value=0.039 Score=47.11 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGV 71 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v 71 (164)
+|+|+|.|+ ++||=.|+.-+--.+.+.+..++-.|+
T Consensus 474 ~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~ 509 (569)
T COG4232 474 AKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDV 509 (569)
T ss_pred CCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCe
Confidence 358988888 999999985422222333444444444
No 166
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.66 E-value=0.13 Score=30.84 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=26.5
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEEe
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND-AFVMKAWKENLGINDEVLLLSD 103 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~-~~~~~~~~~~~~~~~~~~~l~D 103 (164)
.|...|||.|..- ...+ .+.++.+.. +..+. .+...++.+..+.. .+|.+.+
T Consensus 4 l~~~~~c~~c~~~-~~~l-------~~~~i~~~~-~~i~~~~~~~~~~~~~~~~~-~vP~i~~ 56 (73)
T cd02976 4 VYTKPDCPYCKAT-KRFL-------DERGIPFEE-VDVDEDPEALEELKKLNGYR-SVPVVVI 56 (73)
T ss_pred EEeCCCChhHHHH-HHHH-------HHCCCCeEE-EeCCCCHHHHHHHHHHcCCc-ccCEEEE
Confidence 3347899999974 3333 335666555 55553 33333343332321 2555544
No 167
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.53 E-value=0.14 Score=37.05 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=44.7
Q ss_pred eehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc-
Q 045485 27 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGN- 105 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~- 105 (164)
+..+.- .+|+++|.+. .+||..|...+ . +.| .++ ++.+++.++ .++|..|.+
T Consensus 30 ~~~Ak~-e~KpIfl~ig-~~~C~wChvM~-~------esf-------------~d~-eVa~~lN~~----FI~VkvDree 82 (163)
T PF03190_consen 30 LEKAKK-ENKPIFLSIG-YSWCHWCHVME-R------ESF-------------SDP-EVAEYLNRN----FIPVKVDREE 82 (163)
T ss_dssp HHHHHH-HT--EEEEEE--TT-HHHHHHH-H------HTT-------------T-H-HHHHHHHHH-----EEEEEETTT
T ss_pred HHHHHh-cCCcEEEEEE-ecCCcchhhhc-c------cCc-------------CCH-HHHHHHhCC----EEEEEecccc
Confidence 334444 4777777777 89999998641 1 111 111 222333322 144555543
Q ss_pred -chHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecC--CceeecCHHHHHh
Q 045485 106 -GVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG--GAFTFSGAEDMLK 162 (164)
Q Consensus 106 -~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~--~~~~~~~~~~~l~ 162 (164)
.++.+.|.-....-.+. + |.| .+++++++|+..+...+-. .....+..-++|+
T Consensus 83 ~Pdid~~y~~~~~~~~~~-g-GwP--l~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~ 138 (163)
T PF03190_consen 83 RPDIDKIYMNAVQAMSGS-G-GWP--LTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLE 138 (163)
T ss_dssp -HHHHHHHHHHHHHHHS-----SS--EEEEE-TTS-EEEEESS--SS-BTTB--HHHHHH
T ss_pred CccHHHHHHHHHHHhcCC-C-CCC--ceEEECCCCCeeeeeeecCCCCCCCCccHHHHHH
Confidence 34444442100000000 1 454 4999999999999876632 1123345555554
No 168
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.49 E-value=0.1 Score=32.69 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=28.9
Q ss_pred CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEe
Q 045485 45 GAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSD 103 (164)
Q Consensus 45 ~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D 103 (164)
.+|||.|.+- ...| .+.|+..-. +..+.......+.+..|.. .+|.+..
T Consensus 15 ~~~Cp~C~~a-k~~L-------~~~gi~y~~-idi~~~~~~~~~~~~~g~~-~vP~i~i 63 (79)
T TIGR02190 15 KPGCPFCAKA-KATL-------KEKGYDFEE-IPLGNDARGRSLRAVTGAT-TVPQVFI 63 (79)
T ss_pred CCCCHhHHHH-HHHH-------HHcCCCcEE-EECCCChHHHHHHHHHCCC-CcCeEEE
Confidence 8999999974 3222 346777666 5565444444555555532 2666554
No 169
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.26 E-value=0.12 Score=32.84 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=23.4
Q ss_pred ecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 43 VPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 43 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
|..+|||.|.+- .+.|+++..++ .++...- +..+
T Consensus 6 y~~~~C~~C~~a-~~~L~~l~~~~--~~i~~~~-idi~ 39 (85)
T PRK11200 6 FGRPGCPYCVRA-KELAEKLSEER--DDFDYRY-VDIH 39 (85)
T ss_pred EeCCCChhHHHH-HHHHHhhcccc--cCCcEEE-EECC
Confidence 338899999986 77777766544 5676655 5554
No 170
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=93.66 E-value=0.15 Score=36.61 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=47.8
Q ss_pred ecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC---CHHHHHHHHHHh--
Q 045485 18 FDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN---DAFVMKAWKENL-- 92 (164)
Q Consensus 18 ~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d---~~~~~~~~~~~~-- 92 (164)
-|+||+ ++.||. -|.. + ...-..|+ | +...+++..+++.|..++- ++.= .....+.|+.++
T Consensus 4 sDIDGT---iT~SD~-~G~i-~-~~~G~d~~------h-~g~~~l~~~i~~~GY~ilY-lTaRp~~qa~~Tr~~L~~~~q 69 (157)
T PF08235_consen 4 SDIDGT---ITKSDV-LGHI-L-PILGKDWT------H-PGAAELYRKIADNGYKILY-LTARPIGQANRTRSWLAQHQQ 69 (157)
T ss_pred EeccCC---cCccch-hhhh-h-hccCchhh------h-hcHHHHHHHHHHCCeEEEE-ECcCcHHHHHHHHHHHHHHHh
Confidence 478887 899998 3652 2 22213343 3 6777888999999999888 6554 355668898887
Q ss_pred ---CCCCceEEEEeC
Q 045485 93 ---GINDEVLLLSDG 104 (164)
Q Consensus 93 ---~~~~~~~~l~D~ 104 (164)
++| .-|++.-|
T Consensus 70 ~~~~lP-~Gpv~~sP 83 (157)
T PF08235_consen 70 QGHNLP-DGPVLLSP 83 (157)
T ss_pred CCccCC-CCCEEECC
Confidence 776 33444443
No 171
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.32 E-value=0.13 Score=40.75 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=36.0
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhC---CCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSK---GVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~---~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..+.|.|+ ++|||..+.- .|.|.+.++.++++ |-.|.|.|-.|.. ....+++.++
T Consensus 14 elvfv~Fy-AdWCrFSq~L-~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---~~ia~ky~I~ 71 (375)
T KOG0912|consen 14 ELVFVNFY-ADWCRFSQML-KPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---DDIADKYHIN 71 (375)
T ss_pred eEEeeeee-hhhchHHHHH-hHHHHHHHHHHHHhCCCcceEEEEcccchh---hHHhhhhccc
Confidence 33555555 9999999997 89999888888743 3445664444443 2344556554
No 172
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.26 E-value=0.24 Score=31.38 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=29.3
Q ss_pred ecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeC
Q 045485 43 VPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 43 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
|..+|||.|... .. .|.++|+.+-- +..+...+..+.++..|.. ..|++...
T Consensus 6 Yt~~~Cp~C~~a-k~-------~L~~~gI~~~~-idi~~~~~~~~~~~~~g~~-~vPvv~i~ 57 (81)
T PRK10329 6 YTRNDCVQCHAT-KR-------AMESRGFDFEM-INVDRVPEAAETLRAQGFR-QLPVVIAG 57 (81)
T ss_pred EeCCCCHhHHHH-HH-------HHHHCCCceEE-EECCCCHHHHHHHHHcCCC-CcCEEEEC
Confidence 347899999974 32 23557888766 5665333333334444542 25665543
No 173
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.20 E-value=0.2 Score=30.65 Aligned_cols=52 Identities=10% Similarity=0.215 Sum_probs=29.1
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEe
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSD 103 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D 103 (164)
+|..++||.|... ...| .+.|+.+-. +..+......+.+++.|.. .+|++..
T Consensus 3 ly~~~~Cp~C~~a-k~~L-------~~~~i~~~~-~di~~~~~~~~~~~~~g~~-~vP~v~~ 54 (72)
T TIGR02194 3 VYSKNNCVQCKMT-KKAL-------EEHGIAFEE-INIDEQPEAIDYVKAQGFR-QVPVIVA 54 (72)
T ss_pred EEeCCCCHHHHHH-HHHH-------HHCCCceEE-EECCCCHHHHHHHHHcCCc-ccCEEEE
Confidence 3447899999974 3333 346777655 5555333334444445642 2665554
No 174
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.20 E-value=0.21 Score=36.87 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=17.9
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHH
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVE 61 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~ 61 (164)
++..+++|+ ...||+|... .+.+.+
T Consensus 77 ~~~~i~~f~-D~~Cp~C~~~-~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFT-DPDCPYCRKL-EKELKP 101 (197)
T ss_pred CCEEEEEEE-CCCCccHHHH-HHHHhh
Confidence 455665655 8899999986 566655
No 175
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.86 E-value=0.38 Score=29.32 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=29.3
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCCCCceEEEE
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
.|..++||.|..- ... +++.|+..-. +..+ +++..+++.+..+....+|.+.
T Consensus 4 ly~~~~Cp~C~~a-k~~-------L~~~~i~~~~-i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 4 IYTKPNCPYCVRA-KAL-------LDKKGVDYEE-IDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEeCCCChHHHHH-HHH-------HHHCCCcEEE-EECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 3347899999974 322 3345776655 5554 3556666666655310155544
No 176
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=92.59 E-value=0.27 Score=33.40 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=12.3
Q ss_pred CCCcEEEEEecCC----CCcCCC
Q 045485 34 SNKKAILFAVPGA----FTPTCS 52 (164)
Q Consensus 34 ~g~~vvl~f~~~~----~cp~C~ 52 (164)
.+|.++|++. +. ||..|+
T Consensus 16 e~K~llVylh-s~~~~~~~~fc~ 37 (116)
T cd02991 16 ELRFLLVYLH-GDDHQDTDEFCR 37 (116)
T ss_pred hCCEEEEEEe-CCCCccHHHHHH
Confidence 4677777777 66 566664
No 177
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=92.35 E-value=0.28 Score=31.30 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=23.3
Q ss_pred ecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhC
Q 045485 43 VPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLG 93 (164)
Q Consensus 43 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~ 93 (164)
|..+|||.|..- ...|+++..++ .++...- +..+ +.....++.+..+
T Consensus 5 ys~~~Cp~C~~a-k~~L~~~~~~~--~~i~~~~-idi~~~~~~~~~l~~~~g 52 (86)
T TIGR02183 5 FGRPGCPYCVRA-KQLAEKLAIER--ADFEFRY-IDIHAEGISKADLEKTVG 52 (86)
T ss_pred EeCCCCccHHHH-HHHHHHhCccc--CCCcEEE-EECCCCHHHHHHHHHHhC
Confidence 347899999974 44444432221 2444444 4443 2222334444455
No 178
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=92.26 E-value=0.28 Score=34.98 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=37.6
Q ss_pred eEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHHh
Q 045485 98 VLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLK 162 (164)
Q Consensus 98 ~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~ 162 (164)
=.++.|..+..-.+|++... ..+.+|+|++|+|.+++-+ -.+..++.+++.
T Consensus 127 Sq~vlD~~gvak~AWqL~e~-----------~SaivVlDk~G~VkfvkeG---aLt~aevQ~Vi~ 177 (184)
T COG3054 127 SQFVLDSNGVAKNAWQLKEE-----------SSAVVVLDKDGRVKFVKEG---ALTQAEVQQVID 177 (184)
T ss_pred eeeEEccchhhhhhhccccc-----------cceEEEEcCCCcEEEEecC---CccHHHHHHHHH
Confidence 47788988855559999743 1569999999999988874 455666666654
No 179
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.33 Score=39.69 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=35.9
Q ss_pred cEEEEEecCCCCcCCCcCchhhHHHhHHHHHh-CCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 37 KAILFAVPGAFTPTCSQKHLPGFVEKSAELKS-KGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 37 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~-~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..++.|| +.||+.|+.. .|.+.++...++. .++.+.. +..+....+.....-.+++
T Consensus 164 ~~lv~f~-aPwc~~ck~l-~~~~~~~a~~~~~~~~v~~~~-~d~~~~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 164 DWLVEFY-APWCGHCKKL-APEWEKLAKLLKSKENVELGK-IDATVHKSLASRLEVRGYP 220 (383)
T ss_pred ceEEEEe-ccccHHhhhc-ChHHHHHHHHhccCcceEEEe-eccchHHHHhhhhcccCCc
Confidence 3555665 8999999997 8999999998874 5565555 5444333333333333443
No 180
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.03 E-value=0.12 Score=44.21 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=41.3
Q ss_pred cEEEEEecCCCCcCCCcCchhhHHHhHHHHHh-CCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 045485 37 KAILFAVPGAFTPTCSQKHLPGFVEKSAELKS-KGVDIVACISVNDAFVMKAWKENLGINDEVLLL 101 (164)
Q Consensus 37 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~-~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (164)
..+|-|| ++||+.|++- .|.++++...++. ++|-.|++|..-. +.-...+++++++ .||.+
T Consensus 59 ~~lVEFy-~swCGhCr~F-APtfk~~A~dl~~W~~vv~vaaVdCA~-~~N~~lCRef~V~-~~Ptl 120 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAF-APTFKKFAKDLEKWRPVVRVAAVDCAD-EENVKLCREFSVS-GYPTL 120 (606)
T ss_pred hHHHHHH-Hhhhhhhhhc-chHHHHHHHHHhcccceeEEEEeeccc-hhhhhhHhhcCCC-CCcee
Confidence 4566777 9999999998 8999999988863 2233333243333 3345778888876 45554
No 181
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=91.99 E-value=0.49 Score=27.96 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=27.0
Q ss_pred CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHH-HHHHHHhCCCCceEEEEe
Q 045485 45 GAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVM-KAWKENLGINDEVLLLSD 103 (164)
Q Consensus 45 ~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~-~~~~~~~~~~~~~~~l~D 103 (164)
..|||.|..- ...| .+.++.+.- +..+..... +.+.+..+.. .+|++..
T Consensus 7 ~~~Cp~C~~~-~~~L-------~~~~i~~~~-~di~~~~~~~~~l~~~~~~~-~~P~~~~ 56 (72)
T cd02066 7 KSTCPYCKRA-KRLL-------ESLGIEFEE-IDILEDGELREELKELSGWP-TVPQIFI 56 (72)
T ss_pred CCCCHHHHHH-HHHH-------HHcCCcEEE-EECCCCHHHHHHHHHHhCCC-CcCEEEE
Confidence 7899999974 3333 334566655 555543334 4444445542 2666554
No 182
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=91.96 E-value=0.42 Score=29.62 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=27.7
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCCCCceEEEE
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
.|..+|||.|..- ...| ++.|+..-- +..+ +++..+++.+..|.. .+|.+.
T Consensus 3 ly~~~~Cp~C~~a-~~~L-------~~~~i~~~~-~di~~~~~~~~~~~~~~g~~-~vP~i~ 54 (79)
T TIGR02181 3 IYTKPYCPYCTRA-KALL-------SSKGVTFTE-IRVDGDPALRDEMMQRSGRR-TVPQIF 54 (79)
T ss_pred EEecCCChhHHHH-HHHH-------HHcCCCcEE-EEecCCHHHHHHHHHHhCCC-CcCEEE
Confidence 3448999999974 3333 335665444 4444 445555665554432 255444
No 183
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.87 E-value=0.34 Score=29.50 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=17.2
Q ss_pred CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 45 GAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 45 ~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
.+|||.|.+- ...| .+.|+...- +..+.
T Consensus 8 ~~~Cp~C~~a-k~~L-------~~~~i~~~~-~~v~~ 35 (72)
T cd03029 8 KPGCPFCARA-KAAL-------QENGISYEE-IPLGK 35 (72)
T ss_pred CCCCHHHHHH-HHHH-------HHcCCCcEE-EECCC
Confidence 7899999974 3222 345666555 55543
No 184
>PHA03050 glutaredoxin; Provisional
Probab=91.63 E-value=0.33 Score=32.56 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=12.8
Q ss_pred CCCcEEEEEecCCCCcCCCcC
Q 045485 34 SNKKAILFAVPGAFTPTCSQK 54 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~ 54 (164)
+.+.++|+. .+|||+|.+-
T Consensus 11 ~~~~V~vys--~~~CPyC~~a 29 (108)
T PHA03050 11 ANNKVTIFV--KFTCPFCRNA 29 (108)
T ss_pred ccCCEEEEE--CCCChHHHHH
Confidence 444454444 7899999974
No 185
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.48 E-value=1.2 Score=29.15 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=30.4
Q ss_pred CCCcEEEEEec---CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCCCCceEEEE
Q 045485 34 SNKKAILFAVP---GAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 34 ~g~~vvl~f~~---~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
+.+++||+--. .+|||.|.+- . + -|.+.|+.... +..+ +++...+..+..|.+ .+|.+.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~a-k----~---lL~~~~i~~~~-~di~~~~~~~~~l~~~tg~~-tvP~vf 72 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARA-V----Q---ILKACGVPFAY-VNVLEDPEIRQGIKEYSNWP-TIPQLY 72 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHH-H----H---HHHHcCCCEEE-EECCCCHHHHHHHHHHhCCC-CCCEEE
Confidence 45667666531 1799999874 2 2 23445666555 5553 343333333434432 244443
No 186
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=91.21 E-value=0.19 Score=29.50 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=28.0
Q ss_pred ecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEE
Q 045485 43 VPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA-FVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 43 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~-~~~~~~~~~~~~~~~~~~l~ 102 (164)
|...+||.|... . +-|+++|+..-. +..+.. +..+++.+..|.. .+|.+.
T Consensus 4 y~~~~C~~C~~~-~-------~~L~~~~i~y~~-~dv~~~~~~~~~l~~~~g~~-~~P~v~ 54 (60)
T PF00462_consen 4 YTKPGCPYCKKA-K-------EFLDEKGIPYEE-VDVDEDEEAREELKELSGVR-TVPQVF 54 (60)
T ss_dssp EESTTSHHHHHH-H-------HHHHHTTBEEEE-EEGGGSHHHHHHHHHHHSSS-SSSEEE
T ss_pred EEcCCCcCHHHH-H-------HHHHHcCCeeeE-cccccchhHHHHHHHHcCCC-ccCEEE
Confidence 337899999974 3 233557777655 555543 4444444444533 244443
No 187
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=91.18 E-value=0.3 Score=35.46 Aligned_cols=109 Identities=16% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCeeeeeecCCCceeeeehhhhc--CCCcEEEEEecCCCCcCCCcCchhhHHHhHH-------HHHhCC--
Q 045485 2 AAISVGDKLPDATLSYFDSAGELQTITVSDLT--SNKKAILFAVPGAFTPTCSQKHLPGFVEKSA-------ELKSKG-- 70 (164)
Q Consensus 2 ~~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~--~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~-------~~~~~~-- 70 (164)
..+++|..+|+..+. .-.||.. +.|.+.. .|++-|++|-...-.+.+... +..+.+..+ .|...+
T Consensus 28 ~~l~~G~Rlp~~~v~-r~aD~~p--~~l~~~l~sdGrfri~vFagd~~~~~~~~~-l~~l~~~L~~~~s~~~r~~~~~~~ 103 (169)
T PF07976_consen 28 GGLRPGRRLPSAKVV-RHADGNP--VHLQDDLPSDGRFRILVFAGDISLPEQLSR-LSALADYLESPSSFLSRFTPKDRD 103 (169)
T ss_dssp TTS-TTCB----EEE-ETTTTEE--EEGGGG--SSS-EEEEEEEETTTTCHCCCH-HHHHHHHHHSTTSHHHHHSBTTS-
T ss_pred cCcCCccccCCceEE-EEcCCCC--hhHhhhcccCCCEEEEEEeCCCccchhHHH-HHHHHHHHHhcchHHHhcCCCCCC
Confidence 358899999999874 4457776 9998764 477777777533333333332 444444332 232211
Q ss_pred ----CcEEEEEecC---------CHHHHHHHHHHhCCCCceEEEEeC------cchHHHHhCCcc
Q 045485 71 ----VDIVACISVN---------DAFVMKAWKENLGINDEVLLLSDG------NGVFTKAIGCEL 116 (164)
Q Consensus 71 ----v~vi~~is~d---------~~~~~~~~~~~~~~~~~~~~l~D~------~~~~~~~~gv~~ 116 (164)
+.++. |... -|+..+.+..++++. .+.++.|. .+.+.+.|||..
T Consensus 104 ~~s~~~~~~-I~~~~~~~~e~~dlP~~~~p~~~~~~~~-~~~vy~Dd~~~~~~~g~~y~~~Gid~ 166 (169)
T PF07976_consen 104 PDSVFDVLL-IHSSPRDEVELFDLPEIFRPFDGKRGWD-YWKVYVDDESYHSGHGDAYEKYGIDR 166 (169)
T ss_dssp TTSSEEEEE-EESS-CCCS-GGGS-CCCS-EETTTTC---SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred CCCeeEEEE-EecCCCCceeHHHCcHhhCcccCCCCcc-ceeEEecCcccccCcccHHHhhCCCc
Confidence 55666 5443 133344444455654 56778874 478899999863
No 188
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=0.5 Score=29.83 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=29.9
Q ss_pred CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-EecCCHHHHHHHHHHh-CCCCceEEEEeCc
Q 045485 45 GAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-ISVNDAFVMKAWKENL-GINDEVLLLSDGN 105 (164)
Q Consensus 45 ~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is~d~~~~~~~~~~~~-~~~~~~~~l~D~~ 105 (164)
-++||+|.+. ... +.++|+...-+ +..+..++.+.++++. |.. .+|.+...+
T Consensus 8 ~~~CPyC~~a-k~~-------L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~-tvP~I~i~~ 61 (80)
T COG0695 8 KPGCPYCKRA-KRL-------LDRKGVDYEEIDVDDDEPEEAREMVKRGKGQR-TVPQIFIGG 61 (80)
T ss_pred CCCCchHHHH-HHH-------HHHcCCCcEEEEecCCcHHHHHHHHHHhCCCC-CcCEEEECC
Confidence 4679999984 322 23567665542 3444555677777776 432 266555443
No 189
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=90.83 E-value=0.47 Score=29.33 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=27.1
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHH-HHhCCCCceEEEEe
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWK-ENLGINDEVLLLSD 103 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~-~~~~~~~~~~~l~D 103 (164)
+|...|||.|..- .+.|+++.. ....+= +..+ ...+.+..+ +..|.+ .+|.+..
T Consensus 4 ~y~~~~Cp~C~~~-~~~l~~~~~-----~~~~~~-v~~~~~~~~~~~~~~~~~g~~-~~P~v~~ 59 (82)
T cd03419 4 VFSKSYCPYCKRA-KSLLKELGV-----KPAVVE-LDQHEDGSEIQDYLQELTGQR-TVPNVFI 59 (82)
T ss_pred EEEcCCCHHHHHH-HHHHHHcCC-----CcEEEE-EeCCCChHHHHHHHHHHhCCC-CCCeEEE
Confidence 3448999999975 444444422 233444 4433 224444444 334543 2555443
No 190
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.35 E-value=0.21 Score=34.59 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHH
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAEL 66 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~ 66 (164)
++.+|+.|+ ..+||.|... -+.+.++..++
T Consensus 5 a~~~i~~f~-D~~Cp~C~~~-~~~l~~~~~~~ 34 (154)
T cd03023 5 GDVTIVEFF-DYNCGYCKKL-APELEKLLKED 34 (154)
T ss_pred CCEEEEEEE-CCCChhHHHh-hHHHHHHHHHC
Confidence 344555555 8999999997 68888877655
No 191
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=89.94 E-value=0.46 Score=31.25 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=13.0
Q ss_pred CCCcEEEEEecCCCCcCCCcC
Q 045485 34 SNKKAILFAVPGAFTPTCSQK 54 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~ 54 (164)
+..+++|+- .+|||.|.+.
T Consensus 6 ~~~~Vvvys--k~~Cp~C~~a 24 (99)
T TIGR02189 6 SEKAVVIFS--RSSCCMCHVV 24 (99)
T ss_pred ccCCEEEEE--CCCCHHHHHH
Confidence 345555444 6899999974
No 192
>PRK10638 glutaredoxin 3; Provisional
Probab=89.85 E-value=1.3 Score=27.72 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=28.3
Q ss_pred ecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEE
Q 045485 43 VPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND-AFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 43 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~-~~~~~~~~~~~~~~~~~~~l~ 102 (164)
|..+|||.|..- .. .+.++|+..-- +..+. ++...++.+..|.. .+|.+.
T Consensus 7 y~~~~Cp~C~~a-~~-------~L~~~gi~y~~-~dv~~~~~~~~~l~~~~g~~-~vP~i~ 57 (83)
T PRK10638 7 YTKATCPFCHRA-KA-------LLNSKGVSFQE-IPIDGDAAKREEMIKRSGRT-TVPQIF 57 (83)
T ss_pred EECCCChhHHHH-HH-------HHHHcCCCcEE-EECCCCHHHHHHHHHHhCCC-CcCEEE
Confidence 337899999974 32 23345666554 55543 33445566655543 366654
No 193
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=89.62 E-value=1.6 Score=26.48 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=27.2
Q ss_pred CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCCCCceEEEE
Q 045485 45 GAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 45 ~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
.++||.|.+- ... +.+.|+..-. +..+ .++...++.+..+.. .+|.+.
T Consensus 8 ~~~C~~C~ka-~~~-------L~~~gi~~~~-~di~~~~~~~~el~~~~g~~-~vP~v~ 56 (73)
T cd03027 8 RLGCEDCTAV-RLF-------LREKGLPYVE-INIDIFPERKAELEERTGSS-VVPQIF 56 (73)
T ss_pred cCCChhHHHH-HHH-------HHHCCCceEE-EECCCCHHHHHHHHHHhCCC-CcCEEE
Confidence 6799999974 322 3346777666 5554 344455555555532 245443
No 194
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=89.17 E-value=0.47 Score=32.02 Aligned_cols=64 Identities=8% Similarity=-0.024 Sum_probs=43.0
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec--C--CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV--N--DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~--d--~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
.+|...+|+.|++. . +-|.+.|+.+-. +.. + +.+++.+|++..+.+ +.-+....+...+.++..
T Consensus 3 ~iY~~~~C~~c~ka-~-------~~L~~~gi~~~~-idi~~~~~~~~el~~~~~~~~~~--~~~l~n~~~~~~k~l~~~ 70 (115)
T cd03032 3 KLYTSPSCSSCRKA-K-------QWLEEHQIPFEE-RNLFKQPLTKEELKEILSLTENG--VEDIISTRSKAFKNLNID 70 (115)
T ss_pred EEEeCCCCHHHHHH-H-------HHHHHCCCceEE-EecCCCcchHHHHHHHHHHhcCC--HHHHHhcCcHHHHHcCCC
Confidence 34557889999974 3 234446766555 332 2 578889999988766 555556677888887764
No 195
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=88.97 E-value=3.6 Score=28.67 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=25.6
Q ss_pred eCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 103 DGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 103 D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
|.+..++.+|||. ++| ++++=+||+++....+
T Consensus 78 D~~~~LA~~fgV~----------siP---TLl~FkdGk~v~~i~G 109 (132)
T PRK11509 78 EQSEAIGDRFGVF----------RFP---ATLVFTGGNYRGVLNG 109 (132)
T ss_pred CCCHHHHHHcCCc----------cCC---EEEEEECCEEEEEEeC
Confidence 5568899999997 555 4788889999888875
No 196
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.91 E-value=0.71 Score=33.22 Aligned_cols=31 Identities=3% Similarity=0.072 Sum_probs=24.0
Q ss_pred cchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 105 NGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 105 ~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
..++++.|++.. + |+.++.|..|+-...-.|
T Consensus 104 ~~ELa~kf~vrs----------t--PtfvFfdk~Gk~Il~lPG 134 (182)
T COG2143 104 TEELAQKFAVRS----------T--PTFVFFDKTGKTILELPG 134 (182)
T ss_pred HHHHHHHhcccc----------C--ceEEEEcCCCCEEEecCC
Confidence 358899999973 3 669999999988766554
No 197
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=87.24 E-value=1.7 Score=31.64 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=45.9
Q ss_pred cCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeC-c----chHHHHhCCc
Q 045485 53 QKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDG-N----GVFTKAIGCE 115 (164)
Q Consensus 53 ~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~-~----~~~~~~~gv~ 115 (164)
.+..|++.+..+++++.|+.++. +|.++...+..|.++.+++ |..-+-. - ....+++++.
T Consensus 45 ~~~tpe~~~W~~e~k~~gi~v~v-vSNn~e~RV~~~~~~l~v~--fi~~A~KP~~~~fr~Al~~m~l~ 109 (175)
T COG2179 45 PDATPELRAWLAELKEAGIKVVV-VSNNKESRVARAAEKLGVP--FIYRAKKPFGRAFRRALKEMNLP 109 (175)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEE-EeCCCHHHHHhhhhhcCCc--eeecccCccHHHHHHHHHHcCCC
Confidence 34479999999999999999887 8999999999999999988 6555542 1 2334555554
No 198
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=86.42 E-value=6.1 Score=26.38 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=42.9
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
...+++..+++++.+..-+. ++.++.+++++..+-- .. .+++-....++++++|+.
T Consensus 37 ~~WL~~~~~~L~~l~AvGlV-VnV~t~~~l~~Lr~la-pg--l~l~P~sgddLa~rL~l~ 92 (105)
T TIGR03765 37 RQWLQQNAAALKSLGAVGLV-VNVETAAALQRLRALA-PG--LPLLPVSGDDLAERLGLR 92 (105)
T ss_pred HHHHHHHHHHHHHCCCeEEE-EecCCHHHHHHHHHHc-CC--CcccCCCHHHHHHHhCCC
Confidence 66678888999988886666 7889998887776544 23 556666667899999996
No 199
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=86.28 E-value=0.13 Score=35.71 Aligned_cols=66 Identities=6% Similarity=-0.016 Sum_probs=42.8
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEe--c--CCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACIS--V--NDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is--~--d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
|.+|...+||.|++. . +-+.+.|+.+-. +. . .+.+++.+|++..+.+ +.-+....+..++.++..
T Consensus 2 i~iY~~~~C~~C~ka-~-------~~L~~~gi~~~~-idi~~~~~~~~eL~~~l~~~~~g--~~~lin~~~~~~k~l~~~ 70 (131)
T PRK01655 2 VTLFTSPSCTSCRKA-K-------AWLEEHDIPFTE-RNIFSSPLTIDEIKQILRMTEDG--TDEIISTRSKVFQKLNVD 70 (131)
T ss_pred EEEEeCCCChHHHHH-H-------HHHHHcCCCcEE-eeccCChhhHHHHHHHHHHhcCC--HHHHHhcCcHHHHhCCCC
Confidence 344557899999974 3 234445766555 33 2 2468889999988665 544455667777777765
Q ss_pred c
Q 045485 116 L 116 (164)
Q Consensus 116 ~ 116 (164)
.
T Consensus 71 ~ 71 (131)
T PRK01655 71 V 71 (131)
T ss_pred c
Confidence 3
No 200
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=86.16 E-value=0.91 Score=30.66 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=40.6
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec----CCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV----NDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~----d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
+|..++||.|++- ... +.+.|+.+-. +.. .+.+++.++++..|.. +.-+....+..++.++.
T Consensus 3 iY~~~~C~~c~ka-~~~-------L~~~~i~~~~-idi~~~~~~~~el~~l~~~~~~~--~~~lin~~~~~~k~l~~ 68 (117)
T TIGR01617 3 VYGSPNCTTCKKA-RRW-------LEANGIEYQF-IDIGEDGPTREELLDILSLLEDG--IDPLLNTRGQSYRALNT 68 (117)
T ss_pred EEeCCCCHHHHHH-HHH-------HHHcCCceEE-EecCCChhhHHHHHHHHHHcCCC--HHHheeCCCcchhhCCc
Confidence 3447889999975 433 3345666555 432 2467788889988876 55555667777777775
No 201
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=86.01 E-value=3.2 Score=32.50 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=48.9
Q ss_pred CCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHH
Q 045485 8 DKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKA 87 (164)
Q Consensus 8 ~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~ 87 (164)
+.+|-|++ .|.+|+. +-.+.-.+++..-+++++. -...+- +.++++...++. .+++|+. ++-+...++
T Consensus 80 ~~VPVFtI--tn~~G~p--vl~s~~~~~~~~gvf~s~q---edA~af-L~~lk~~~p~l~-~~~kV~p-vsL~~vYkl-- 147 (270)
T TIGR00995 80 AGTSVFTV--SNAQNEF--VLASDNDGEKSIGLLCFRQ---EDAEAF-LAQLRKRKPEVG-SQAKVVP-ITLDQVYKL-- 147 (270)
T ss_pred cCCceEEE--EcCCCCe--EEEECCCCCceEEEEECCH---HHHHHH-HHHHHhhCcccc-CCceEEE-EEHHHHHHH--
Confidence 35788884 5778886 5555442234333333210 001111 333333333332 4688888 888877655
Q ss_pred HHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 88 WKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 88 ~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
...++. |.++.|+ .++..+.++.
T Consensus 148 --~~e~l~--F~fiP~~-~qV~~A~~ll 170 (270)
T TIGR00995 148 --KVEGIG--FRFLPDP-AQIKNALELP 170 (270)
T ss_pred --hhcCcc--EEEeCCH-HHHHHHHHHH
Confidence 345577 9999986 3444444444
No 202
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=85.68 E-value=0.13 Score=34.55 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=38.6
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-Eec--CCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-ISV--NDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is~--d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
.|..++||.|++. ... |.+.|+.+-.+ +.. .+.+++.+|++..+.+ +.-+....+...+.+++.
T Consensus 3 iY~~~~C~~c~ka-~~~-------L~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~--~~~l~~~~~~~~~~l~~~ 69 (111)
T cd03036 3 FYEYPKCSTCRKA-KKW-------LDEHGVDYTAIDIVEEPPSKEELKKWLEKSGLP--LKKFFNTSGKSYRELGLK 69 (111)
T ss_pred EEECCCCHHHHHH-HHH-------HHHcCCceEEecccCCcccHHHHHHHHHHcCCC--HHHHHhcCCchHHhCCcc
Confidence 3447889999985 432 33456554441 222 3567888999988865 433334556666666654
No 203
>PRK12559 transcriptional regulator Spx; Provisional
Probab=85.16 E-value=1 Score=31.29 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=41.9
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-Ee--cCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-IS--VNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is--~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
.+|...+|+.|++. . +-|.+.|+.+-.+ +. +-+.+++.+|++..+.+ +.-+....+..++.++..
T Consensus 3 ~iY~~~~C~~crkA-~-------~~L~~~gi~~~~~di~~~~~s~~el~~~l~~~~~g--~~~lin~~~~~~k~l~~~ 70 (131)
T PRK12559 3 VLYTTASCASCRKA-K-------AWLEENQIDYTEKNIVSNSMTVDELKSILRLTEEG--ATEIISTRSKTFQDLNIN 70 (131)
T ss_pred EEEeCCCChHHHHH-H-------HHHHHcCCCeEEEEeeCCcCCHHHHHHHHHHcCCC--HHHHHhcCcHHHHhCCCC
Confidence 34557889999974 4 2344456665441 22 33678999999987665 444445567777887765
No 204
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=84.74 E-value=8.6 Score=32.84 Aligned_cols=106 Identities=19% Similarity=0.131 Sum_probs=63.4
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHH
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAF 83 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~ 83 (164)
+.+|+.+|+..+ .+.+|.. ..+.++.+++++||.| +. -|... +. ....+.+...++.++. +.+....
T Consensus 411 ~~~G~~~p~~~~--~~~~~~~--~~~d~~~~~~~~ll~~--~~-~~~~~---~~--~~~~~~~~~~~~~~~~-~~~~~~~ 477 (538)
T PRK06183 411 SPVGTLFPQPRV--ELGGGDR--GLLDDVLGPGFAVLGW--GC-DPLAG---LS--DEQRARWRALGARFVQ-VVPAVQA 477 (538)
T ss_pred CCcccCcCCCee--EcCCCCc--ccchhccCCceEEEEe--cC-Cchhc---CC--HHHHHHHHHcCCeEEE-Eeccccc
Confidence 458999999874 3333432 4566675555676655 21 12222 21 1112335557787777 4443211
Q ss_pred HHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEE
Q 045485 84 VMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLN 145 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~ 145 (164)
. . -. ...+.|.++.+.+.|+... ...+||=||+-|-...
T Consensus 478 ~---~-----~~--~~~~~d~~g~~~~~~~~~~-------------~~~~lvRPD~~v~~~~ 516 (538)
T PRK06183 478 H---T-----AQ--DDHDSDVDGALRAWLARHG-------------ASAVLLRPDRYVAAAA 516 (538)
T ss_pred c---c-----CC--CceeecCCchHHHHHHhCC-------------CEEEEECCCEEEEEee
Confidence 1 0 23 6678899999999999752 3479999999997553
No 205
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=84.72 E-value=9.6 Score=26.92 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=43.4
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
...|++..+++++.+..-+. |+.++.+.+++..+-- .. .+++-....++++++|+.
T Consensus 75 ~~WL~~~~~~L~~l~AvGlV-VNV~t~~~L~~Lr~la-pg--l~l~P~sgddLA~rL~l~ 130 (142)
T PF11072_consen 75 RQWLQQNAEELKQLGAVGLV-VNVATEAALQRLRQLA-PG--LPLLPVSGDDLARRLGLS 130 (142)
T ss_pred HHHHHHHHHHHHHCCCeEEE-EecCCHHHHHHHHHHc-CC--CeecCCCHHHHHHHhCCC
Confidence 66788889999999987666 8899998888776543 23 556656667899999997
No 206
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=84.54 E-value=13 Score=26.83 Aligned_cols=120 Identities=15% Similarity=0.233 Sum_probs=66.9
Q ss_pred CCCCCCeeeeeecCCCceeeeehhhhc--CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCC--------------
Q 045485 7 GDKLPDATLSYFDSAGELQTITVSDLT--SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKG-------------- 70 (164)
Q Consensus 7 G~~~P~f~l~~~~~~g~~~~~~l~d~~--~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~-------------- 70 (164)
|..+|++...-. .++.. +.|.+.. .|++=|++|- ++- .+... ...+.++.+.+.+..
T Consensus 1 G~R~~~a~V~r~-aD~~p--~~L~~~~~adGrfrI~vFa-gd~--~~~~~-~~~l~~~~~~L~~~~~~~~~~~~~~~~~~ 73 (167)
T cd02979 1 GRRFPSAPVVRQ-ADALP--VHLGHRLPADGRFRIYVFA-GDI--APAQQ-KSRLTQLCDALDSPDSFPLRYTPRGADPD 73 (167)
T ss_pred CCcCCCceEEEe-cCCCC--HhHhhhccCCCCEEEEEEc-CCC--CchhH-HHHHHHHHHHHcCCcchHhhcCCCCCCCC
Confidence 566788876422 36665 7776654 3677666664 432 22333 456666666653221
Q ss_pred --CcEEEEEecCC---------HHHHHHHHHHhCCCCceEEEEeCc------chHHHHhCCccccCCCCCCCCcceeEEE
Q 045485 71 --VDIVACISVND---------AFVMKAWKENLGINDEVLLLSDGN------GVFTKAIGCELDLSDKPMGLGVRSRRYA 133 (164)
Q Consensus 71 --v~vi~~is~d~---------~~~~~~~~~~~~~~~~~~~l~D~~------~~~~~~~gv~~~~~~~~~~~~~~~p~~~ 133 (164)
+.++. |.... |+....+..+.+.. ...++.|.+ +...+.||+... ..+.+
T Consensus 74 ~~~~~~~-I~~~~~~~~e~~dlP~~~~p~~~~~~~~-~~~v~~d~~~~~~~~~~~~~~~gv~~~-----------~g~vv 140 (167)
T cd02979 74 SVFDVVT-IHAAPRREIELLDLPAVLRPFGEKKGWD-YEKIYADDDSYHEGHGDAYEKYGIDPE-----------RGAVV 140 (167)
T ss_pred CcEEEEE-EecCCccccchhhCcHhhcCCCCccccc-eeeEEecCccccCCcccHHHhhCCCCC-----------CCCEE
Confidence 33444 43321 22222222333443 355677754 678999998632 14588
Q ss_pred EEecCCcEEEEEe
Q 045485 134 LLAENGVVKVLNL 146 (164)
Q Consensus 134 lid~~G~I~~~~~ 146 (164)
||=|||-|-++..
T Consensus 141 vvRPDgyVg~~~~ 153 (167)
T cd02979 141 VVRPDQYVALVGP 153 (167)
T ss_pred EECCCCeEEEEec
Confidence 9999998865444
No 207
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=84.42 E-value=0.16 Score=33.56 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=39.0
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-Ee--cCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-IS--VNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is--~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
+|..++||.|+.. .. -+++.|+.+-.+ +. +.+.+++.++....+.+ +.-+....+..++.++..
T Consensus 3 iY~~~~C~~c~ka-~~-------~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~~~--~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 3 IYGNPNCSTSRKA-LA-------WLEEHGIEYEFIDYLKEPPTKEELKELLAKLGLG--VEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred EEECCCCHHHHHH-HH-------HHHHcCCCcEEEeeccCCCCHHHHHHHHHhcCCC--HHHHHhcCCchHHHcCCc
Confidence 4557899999974 32 334456554441 22 23578888898888865 444444556666666654
No 208
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=83.29 E-value=8.8 Score=32.82 Aligned_cols=105 Identities=18% Similarity=0.147 Sum_probs=61.9
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHH
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAF 83 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~ 83 (164)
+.+|..+|+..+. .+|.. .++.|+.+++++||.|- +. ... .. . .+. ......++.++. +..+...
T Consensus 427 ~~pG~r~p~~~~~---~~~~~--~~l~dl~g~~f~ll~~~-~~-~~~--~~-~---~~~-~~~~~~~~~~~~-~~~~~~~ 491 (547)
T PRK08132 427 PVPGAPAPDAPVR---ADGEP--GWLLDLLGGGFTLLLFG-DD-AAA--AA-L---LQA-LAAAALPVRVVA-VVPAGAA 491 (547)
T ss_pred CCCCCCCCCCccc---CCCCc--eEHHHhcCCCEEEEEec-CC-chh--hh-h---hhh-hhccCCceEEEE-EecCccc
Confidence 5689999998742 34555 78999975556666553 21 110 11 1 111 112223445555 4333211
Q ss_pred HHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 84 VMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
..+ ...+.|.++.+++.|++.. .+.+||=|||-|-..+..
T Consensus 492 ---------~~~--~~~~~d~~~~~~~~~~~~~-------------~~~~LvRPDg~va~~~~~ 531 (547)
T PRK08132 492 ---------QAA--AGVLEDADGLAAERYDARP-------------GTVYLIRPDQHVAARWRT 531 (547)
T ss_pred ---------ccC--cccccCcccHHHHHhCCCC-------------CeEEEECCCceEEEEecC
Confidence 113 3456799999999999852 348999999999877653
No 209
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=83.22 E-value=4.2 Score=35.66 Aligned_cols=114 Identities=22% Similarity=0.264 Sum_probs=68.6
Q ss_pred cCCCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec---CCHHHHHHHHHHh---
Q 045485 19 DSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV---NDAFVMKAWKENL--- 92 (164)
Q Consensus 19 ~~~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~---d~~~~~~~~~~~~--- 92 (164)
|+||. |+-+|.+ |+ ++-+.-.+|. | ..+.+|+.+.++.|.+++- +|. ..+...+.|++..
T Consensus 536 DIDGT---ITKSDvL-Gh--~lp~iGkDWT------h-~GVAkLyt~Ik~NGYk~ly-LSARaIgQA~~TR~yL~nv~Qd 601 (738)
T KOG2116|consen 536 DIDGT---ITKSDVL-GH--VLPMIGKDWT------H-TGVAKLYTKIKENGYKILY-LSARAIGQADSTRQYLKNVEQD 601 (738)
T ss_pred cCCCc---eEhhhhh-hh--hhhhhcCcch------h-hhHHHHHHHHHhCCeeEEE-EehhhhhhhHHHHHHHHHHhhc
Confidence 55565 6666664 44 3444446775 3 5677899999999999988 554 2455556666553
Q ss_pred CCCC-ceEEEEeCcchHHHHhC-----------Cc--------cccCC---------------CCCCCCcceeEEEEEec
Q 045485 93 GIND-EVLLLSDGNGVFTKAIG-----------CE--------LDLSD---------------KPMGLGVRSRRYALLAE 137 (164)
Q Consensus 93 ~~~~-~~~~l~D~~~~~~~~~g-----------v~--------~~~~~---------------~~~~~~~~~p~~~lid~ 137 (164)
|... .=|++.-|++.++.-+. |. ...+. .+..+|+|.-..|+||+
T Consensus 602 G~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~~VgVP~~RIFtINp 681 (738)
T KOG2116|consen 602 GKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTDIKNLFPPSGNPFYAGFGNRITDVISYRQVGVPLSRIFTINP 681 (738)
T ss_pred CccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHHHHHhcCCCCCceeeecCCCcccceeeeeecCCccceEEECC
Confidence 3221 35777777765543322 10 00011 11224678788999999
Q ss_pred CCcEEEEEe
Q 045485 138 NGVVKVLNL 146 (164)
Q Consensus 138 ~G~I~~~~~ 146 (164)
.|+|..-..
T Consensus 682 kGEv~~e~~ 690 (738)
T KOG2116|consen 682 KGEVIQELL 690 (738)
T ss_pred CceehHHHH
Confidence 999976544
No 210
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=83.12 E-value=1.8 Score=30.83 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcE
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDI 73 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~v 73 (164)
.++..|+.|+ ...||.|..- -+.+.++..++. .++.+
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~-~~~~~~~~~~~~-~~v~~ 50 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNF-EPILEAWVKKLP-KDVKF 50 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhh-hHHHHHHHHhCC-CCceE
Confidence 3455666666 7889999997 688888877762 34544
No 211
>PRK10824 glutaredoxin-4; Provisional
Probab=82.86 E-value=5.2 Score=27.19 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=13.0
Q ss_pred CCCcEEEEEecC----CCCcCCCcC
Q 045485 34 SNKKAILFAVPG----AFTPTCSQK 54 (164)
Q Consensus 34 ~g~~vvl~f~~~----~~cp~C~~~ 54 (164)
+.++|||+-- + +|||+|.+-
T Consensus 13 ~~~~Vvvf~K-g~~~~p~Cpyc~~a 36 (115)
T PRK10824 13 AENPILLYMK-GSPKLPSCGFSAQA 36 (115)
T ss_pred hcCCEEEEEC-CCCCCCCCchHHHH
Confidence 4555655543 4 499999974
No 212
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=82.04 E-value=1 Score=31.57 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=30.1
Q ss_pred eehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhC-CCcEEE
Q 045485 27 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSK-GVDIVA 75 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~-~v~vi~ 75 (164)
+.+.+- ..+.+|+.|+ ...||.|... -+.+.++.+++-+. .+.++.
T Consensus 5 ~~~G~~-~a~~~v~~f~-d~~Cp~C~~~-~~~~~~~~~~~i~~~~v~~~~ 51 (162)
T PF13462_consen 5 PTIGNP-DAPITVTEFF-DFQCPHCAKF-HEELEKLLKKYIDPGKVKFVF 51 (162)
T ss_dssp EEES-T-TTSEEEEEEE--TTSHHHHHH-HHHHHHHHHHHTTTTTEEEEE
T ss_pred CeecCC-CCCeEEEEEE-CCCCHhHHHH-HHHHhhhhhhccCCCceEEEE
Confidence 445555 4565555555 8889999997 68898888887333 355544
No 213
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=80.05 E-value=2.6 Score=29.29 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=42.0
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEe----cCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACIS----VNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is----~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
..|-..+|+.|+.- . +-|.+.|+.+-. +. +-+.+++.+|++..|.+ +.-+....+...++++..
T Consensus 3 ~iY~~~~C~~crkA-~-------~~L~~~~i~~~~-~d~~~~~~s~~eL~~~l~~~~~~--~~~lin~~~~~~k~L~~~ 70 (132)
T PRK13344 3 KIYTISSCTSCKKA-K-------TWLNAHQLSYKE-QNLGKEPLTKEEILAILTKTENG--IESIVSSKNRYAKALDCD 70 (132)
T ss_pred EEEeCCCCHHHHHH-H-------HHHHHcCCCeEE-EECCCCCCCHHHHHHHHHHhCCC--HHHhhccCcHHHHhCCcc
Confidence 34446789999974 3 234445666554 32 22678899999998866 544455677777777754
No 214
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.12 E-value=1.7 Score=33.08 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=28.2
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCc
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVD 72 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~ 72 (164)
+..+|-|| +.|.|-|+.. .|-+.++..++.-.+..
T Consensus 145 t~WlIeFf-a~ws~~Cv~~-spvfaeLS~kyn~~~lk 179 (265)
T KOG0914|consen 145 TYWLIEFF-ACWSPKCVRF-SPVFAELSIKYNNNLLK 179 (265)
T ss_pred eEEEEEEE-eecChhhccc-ccccHHHHHHhCCCCCc
Confidence 45677887 9999999998 89999998888654443
No 215
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=78.45 E-value=13 Score=22.81 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEE
Q 045485 84 VMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVK 142 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~ 142 (164)
.+++++++++.. +.++.=.+...+.+||+. ++| +.++ ||+++
T Consensus 19 ~~~~~~~e~~~~--~~~~~v~~~~~a~~~~v~----------~vP--ti~i---~G~~~ 60 (76)
T TIGR00412 19 NVKKAVEELGID--AEFEKVTDMNEILEAGVT----------ATP--GVAV---DGELV 60 (76)
T ss_pred HHHHHHHHcCCC--eEEEEeCCHHHHHHcCCC----------cCC--EEEE---CCEEE
Confidence 346777777766 555443335557788887 444 3444 89887
No 216
>PRK06184 hypothetical protein; Provisional
Probab=77.48 E-value=17 Score=30.63 Aligned_cols=93 Identities=27% Similarity=0.345 Sum_probs=58.2
Q ss_pred CCCCCCCCCeeeeeecCCCceeeeehhhhcC-CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH
Q 045485 4 ISVGDKLPDATLSYFDSAGELQTITVSDLTS-NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA 82 (164)
Q Consensus 4 l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~~-g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~ 82 (164)
+.+|..+|+..+ ...+|+. +++.|+.. ++++||.| +. .. ... ....++.++. +....
T Consensus 386 ~~~G~r~p~~~~--~~~~~~~--~~l~d~~~~~~~~ll~~--~~------~~-~~~-------~~~~~~~~~~-~~~~~- 443 (502)
T PRK06184 386 LRAGDRAPDAPL--LGAAGQP--TRLFDLFRGPHWTLLAF--GA------GA-AAI-------LARRGLRIHR-VGDAA- 443 (502)
T ss_pred CCCcCCCCCchh--ccCCCce--eeHHHhhCCCcEEEEEe--cC------Cc-hhh-------hhhcCceEEE-ecccC-
Confidence 568999999874 2334554 67777765 46677664 21 11 111 1134566555 43221
Q ss_pred HHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEE
Q 045485 83 FVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLN 145 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~ 145 (164)
. ...+.|.++.+.+.|++.. .+.+||=|||-|-+..
T Consensus 444 ------------~--~~~~~d~~g~~~~~~~~~~-------------~~~~lvRPDg~v~~~~ 479 (502)
T PRK06184 444 ------------E--GGDLVDDAGHFRDAYGLTG-------------GTLVLVRPDGYVGLIA 479 (502)
T ss_pred ------------C--CCceeCCCccHHHHhcCCC-------------CcEEEECCCcceEEEe
Confidence 2 3346899999999999853 3479999999997764
No 217
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.47 E-value=3.5 Score=31.31 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=35.7
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+++..+++|| +.||..|.. ++++.....++. .+++++. +..+.-.++.+-..-...+
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q--~~~v~~~~~~~~-~~~~~~k-~~a~~~~eis~~~~v~~vp 72 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQ--MDQVFDHLAEYF-KNAQFLK-LEAEEFPEISNLIAVEAVP 72 (227)
T ss_pred ccchhhhhhh-hhhhhhhhh--HHHHHHHHHHhh-hhheeee-ehhhhhhHHHHHHHHhcCc
Confidence 5677888888 999999996 566655555554 6777666 5555444443333333333
No 218
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=76.37 E-value=3.8 Score=31.99 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=27.7
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC 76 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~ 76 (164)
.+|||+|| -..++.|... -..|..++.+| ..+.++-|
T Consensus 147 ~~VVVHiY-~~~~~~C~~m-n~~L~~LA~ky--p~vKFvkI 183 (265)
T PF02114_consen 147 TWVVVHIY-EPGFPRCEIM-NSCLECLARKY--PEVKFVKI 183 (265)
T ss_dssp -EEEEEEE--TTSCCHHHH-HHHHHHHHHH---TTSEEEEE
T ss_pred cEEEEEEE-eCCCchHHHH-HHHHHHHHHhC--CceEEEEE
Confidence 45777776 6789999997 88999999988 56888883
No 219
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=75.81 E-value=18 Score=23.01 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=25.3
Q ss_pred CCCcEEEEEecC----CCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCC
Q 045485 34 SNKKAILFAVPG----AFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLGI 94 (164)
Q Consensus 34 ~g~~vvl~f~~~----~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~ 94 (164)
+++++||+-- + +|||.|..- . + .|.+.|+..-. +..+ +++...+..+..|.
T Consensus 6 ~~~~vvvf~k-~~~~~~~Cp~C~~a-k----~---~L~~~~i~y~~-idv~~~~~~~~~l~~~~g~ 61 (90)
T cd03028 6 KENPVVLFMK-GTPEEPRCGFSRKV-V----Q---ILNQLGVDFGT-FDILEDEEVRQGLKEYSNW 61 (90)
T ss_pred ccCCEEEEEc-CCCCCCCCcHHHHH-H----H---HHHHcCCCeEE-EEcCCCHHHHHHHHHHhCC
Confidence 4566665543 2 488888763 2 2 23344565555 4443 33333333343343
No 220
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=74.68 E-value=4 Score=30.45 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=44.9
Q ss_pred EEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCC----ceEEEEeCcchHHHHhC
Q 045485 38 AILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIND----EVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 38 vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~----~~~~l~D~~~~~~~~~g 113 (164)
-+.+|. -..|+.|..- +..+.. ....+.+..|-|..+.+.++.|..+++++. .=.|-...+.--..+||
T Consensus 111 rlalFv-kd~C~~C~~~-~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg 183 (200)
T TIGR03759 111 RLALFV-KDDCVACDAR-VQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLG 183 (200)
T ss_pred eEEEEe-CCCChHHHHH-HHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHcc
Confidence 455555 5899999975 655533 234566666446678899999999999971 11222223344556777
Q ss_pred Cc
Q 045485 114 CE 115 (164)
Q Consensus 114 v~ 115 (164)
+.
T Consensus 184 ~~ 185 (200)
T TIGR03759 184 LQ 185 (200)
T ss_pred CC
Confidence 64
No 221
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=74.61 E-value=14 Score=32.45 Aligned_cols=125 Identities=11% Similarity=0.126 Sum_probs=69.3
Q ss_pred CCCCCCCCCCeeeeeecCCCceeeeehhhhc--CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhC-----------
Q 045485 3 AISVGDKLPDATLSYFDSAGELQTITVSDLT--SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSK----------- 69 (164)
Q Consensus 3 ~l~~G~~~P~f~l~~~~~~g~~~~~~l~d~~--~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~----------- 69 (164)
.+++|..+|++.+.-. .++.. +.|.+.. .|++.+++|- + ....... ...+..+.+.+.+.
T Consensus 462 ~~~~G~r~~~~~v~~~-~d~~~--~~l~~~~~~~g~~~l~~f~-~--~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~ 534 (634)
T PRK08294 462 GFPIGKRFHSAPVIRL-ADAKP--VHLGHAATADGRWRIYAFA-D--AADPAGP-GSALDALCEFLAESPDSPLRRFTPS 534 (634)
T ss_pred CCCCceeCCCCceeec-cCCCc--hhHhhhcccCCCEEEEEEc-C--CCCcchh-HHHHHHHHHHHhhCccchHhhcCCC
Confidence 4789999999886322 35655 6666543 4677776664 3 2222233 45555555555211
Q ss_pred C------CcEEEEEecC---------CHHHHHHHHHHhCCCCceEEEEeC--cchHHHHhCCccccCCCCCCCCcceeEE
Q 045485 70 G------VDIVACISVN---------DAFVMKAWKENLGINDEVLLLSDG--NGVFTKAIGCELDLSDKPMGLGVRSRRY 132 (164)
Q Consensus 70 ~------v~vi~~is~d---------~~~~~~~~~~~~~~~~~~~~l~D~--~~~~~~~~gv~~~~~~~~~~~~~~~p~~ 132 (164)
+ +.++. |... -|+....+...+++.+...++.|. .....+.|||... .-+.
T Consensus 535 ~~~~~~~~~~~~-i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~-----------~g~~ 602 (634)
T PRK08294 535 GADIDAVIDVRA-IFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDRD-----------RGAV 602 (634)
T ss_pred CCCCCcEEEEEE-EecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCCC-----------ceeE
Confidence 1 33344 3332 233344444555653233455653 3568899998643 1458
Q ss_pred EEEecCCcEEEEEe
Q 045485 133 ALLAENGVVKVLNL 146 (164)
Q Consensus 133 ~lid~~G~I~~~~~ 146 (164)
+|+-|||-|-++..
T Consensus 603 vvvRPD~~v~~~~~ 616 (634)
T PRK08294 603 VVVRPDQYVANVLP 616 (634)
T ss_pred EEECCCCceEEEec
Confidence 89999998865443
No 222
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=74.19 E-value=1.8 Score=28.97 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=38.4
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGC 114 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (164)
.++++ .|=-++.||....- ..+|++.++...+. +.+.. +-.-. .. +-...+++.|||
T Consensus 19 ~~~~~-iFKHSt~C~IS~~a-~~~~e~~~~~~~~~-~~~y~-l~v~~---------~R----------~vSn~IAe~~~V 75 (105)
T PF11009_consen 19 EKPVL-IFKHSTRCPISAMA-LREFEKFWEESPDE-IPVYY-LDVIE---------YR----------PVSNAIAEDFGV 75 (105)
T ss_dssp -SEEE-EEEE-TT-HHHHHH-HHHHHHHHHHHT-----EEE-EEGGG---------GH----------HHHHHHHHHHT-
T ss_pred cCcEE-EEEeCCCChhhHHH-HHHHHHHhhcCCcc-ceEEE-EEEEe---------Cc----------hhHHHHHHHhCC
Confidence 45444 44337778777764 66666666655432 44433 21111 01 113678899999
Q ss_pred ccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 115 ELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
.-+ +|. +|+=++|++++.-..
T Consensus 76 ~He-----------SPQ-~ili~~g~~v~~aSH 96 (105)
T PF11009_consen 76 KHE-----------SPQ-VILIKNGKVVWHASH 96 (105)
T ss_dssp --------------SSE-EEEEETTEEEEEEEG
T ss_pred CcC-----------CCc-EEEEECCEEEEECcc
Confidence 743 244 555578999887664
No 223
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=73.82 E-value=4.6 Score=30.00 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=25.0
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhH---HHhHHHHHhCCCcEEE
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGF---VEKSAELKSKGVDIVA 75 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l---~~~~~~~~~~~v~vi~ 75 (164)
.+++.|+.|| .-.||.|..- -+.+ ..+.+.+. .++.++-
T Consensus 36 ~~~~~VvEff-dy~CphC~~~-~~~l~~~~~~~~~~~-~~v~~~~ 77 (207)
T PRK10954 36 AGEPQVLEFF-SFYCPHCYQF-EEVYHVSDNVKKKLP-EGTKMTK 77 (207)
T ss_pred CCCCeEEEEe-CCCCccHHHh-cccccchHHHHHhCC-CCCeEEE
Confidence 5777778887 6779999985 3444 44445443 4555443
No 224
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=73.08 E-value=6.9 Score=24.02 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=13.9
Q ss_pred CCCCcCCCcCchhhHHHhHHHH
Q 045485 45 GAFTPTCSQKHLPGFVEKSAEL 66 (164)
Q Consensus 45 ~~~cp~C~~~~l~~l~~~~~~~ 66 (164)
+++||.|... ...+++....+
T Consensus 7 ~~~C~~C~~~-~~~~~~~~~~~ 27 (76)
T PF13192_consen 7 SPGCPYCPEL-VQLLKEAAEEL 27 (76)
T ss_dssp CSSCTTHHHH-HHHHHHHHHHT
T ss_pred CCCCCCcHHH-HHHHHHHHHhc
Confidence 6779999965 55555554443
No 225
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=72.71 E-value=2.5 Score=26.30 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=21.8
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEE
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVA 75 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~ 75 (164)
.|+ ...||.|... .+.+.++.... ..++.+.-
T Consensus 3 ~f~-d~~Cp~C~~~-~~~l~~~~~~~-~~~~~~~~ 34 (98)
T cd02972 3 EFF-DPLCPYCYLF-EPELEKLLYAD-DGGVRVVY 34 (98)
T ss_pred EEE-CCCCHhHHhh-hHHHHHHHhhc-CCcEEEEE
Confidence 344 8899999997 78888876332 34555544
No 226
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=72.36 E-value=4.8 Score=24.11 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=24.3
Q ss_pred CCCCcCCCcCchhhHHHhHHHHHhCCC--cEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc
Q 045485 45 GAFTPTCSQKHLPGFVEKSAELKSKGV--DIVACISVNDAFVMKAWKENLGINDEVLLLSDGN 105 (164)
Q Consensus 45 ~~~cp~C~~~~l~~l~~~~~~~~~~~v--~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (164)
..|||.|.+- .+ .+..+|+ +.+- +.... ...+|++..... ..|++.+.+
T Consensus 6 ~~~~p~~~rv------~~--~L~~~gl~~e~~~-v~~~~--~~~~~~~~np~~-~vP~L~~~~ 56 (71)
T cd03060 6 FRRCPYAMRA------RM--ALLLAGITVELRE-VELKN--KPAEMLAASPKG-TVPVLVLGN 56 (71)
T ss_pred cCCCcHHHHH------HH--HHHHcCCCcEEEE-eCCCC--CCHHHHHHCCCC-CCCEEEECC
Confidence 5689999874 22 2233444 3344 32221 123455443332 478877653
No 227
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=72.22 E-value=3.1 Score=33.24 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=25.0
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCc
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVD 72 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~ 72 (164)
.-.++-|| +.||..|.+- -|--++.-.++++-|.-
T Consensus 44 diW~VdFY-APWC~HCKkL-ePiWdeVG~elkdig~P 78 (468)
T KOG4277|consen 44 DIWFVDFY-APWCAHCKKL-EPIWDEVGHELKDIGLP 78 (468)
T ss_pred CeEEEEee-chhhhhcccc-cchhHHhCcchhhcCCc
Confidence 34556776 9999999987 47777766667666644
No 228
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=71.84 E-value=18 Score=30.15 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=47.3
Q ss_pred hhhHHHhHHHHH-hCCCcEEEEEecCC-----HHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcce
Q 045485 56 LPGFVEKSAELK-SKGVDIVACISVND-----AFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRS 129 (164)
Q Consensus 56 l~~l~~~~~~~~-~~~v~vi~~is~d~-----~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~ 129 (164)
.-.+.+++..|. ..+-.-|++|+.|+ .|.++.|.+-.+++ +.+..++. ++..+..-...
T Consensus 217 TTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp--~~vv~~~~-el~~ai~~l~~------------ 281 (407)
T COG1419 217 TTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP--LEVVYSPK-ELAEAIEALRD------------ 281 (407)
T ss_pred HHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc--eEEecCHH-HHHHHHHHhhc------------
Confidence 445667766665 34445577788885 78889999999999 99988763 44444333221
Q ss_pred eEEEEEecCCcE
Q 045485 130 RRYALLAENGVV 141 (164)
Q Consensus 130 p~~~lid~~G~I 141 (164)
...+|||--|+=
T Consensus 282 ~d~ILVDTaGrs 293 (407)
T COG1419 282 CDVILVDTAGRS 293 (407)
T ss_pred CCEEEEeCCCCC
Confidence 347777777754
No 229
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=70.99 E-value=12 Score=25.69 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=23.0
Q ss_pred hHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEeecCCceeecCHHHHH
Q 045485 107 VFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDML 161 (164)
Q Consensus 107 ~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l 161 (164)
.+.+.||+... ++ |+..+++.++. +|... . +.++.+++.+-+
T Consensus 70 ~~~~~fgl~~~--------~~--P~v~i~~~~~~-KY~~~-~-~~~t~e~i~~Fv 111 (130)
T cd02983 70 DLEEALNIGGF--------GY--PAMVAINFRKM-KFATL-K-GSFSEDGINEFL 111 (130)
T ss_pred HHHHHcCCCcc--------CC--CEEEEEecccC-ccccc-c-CccCHHHHHHHH
Confidence 36666666522 23 45788887665 66632 1 345555555444
No 230
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=70.30 E-value=9.3 Score=32.92 Aligned_cols=28 Identities=7% Similarity=-0.045 Sum_probs=18.3
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHH
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSA 64 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~ 64 (164)
+++-|..|-+.+||.|..- ...++++..
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~-~~~~~~~~~ 503 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDV-VLAAQRIAS 503 (555)
T ss_pred CCeEEEEEECCCCCCcHHH-HHHHHHHHH
Confidence 5565656559999999974 444444433
No 231
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=69.54 E-value=8 Score=25.63 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=36.6
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-Ee--cCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-IS--VNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is--~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
.+|..++|+.|++. .. -+.+.|+.+-.+ +. +=+.+++++|+++.|+. .+ ....+..++.++..
T Consensus 2 ~iy~~~~C~~crka-~~-------~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g~~---~l-i~~~~~~yk~l~l~ 67 (105)
T cd03035 2 TLYGIKNCDTVKKA-RK-------WLEARGVAYTFHDYRKDGLDAATLERWLAKVGWE---TL-LNKRGTTWRKLDDA 67 (105)
T ss_pred EEEeCCCCHHHHHH-HH-------HHHHcCCCeEEEecccCCCCHHHHHHHHHHhChH---HH-HccCchHHHhCChh
Confidence 34557899999974 32 233456554441 22 22678999999988743 11 12345566666554
No 232
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=67.62 E-value=7.1 Score=30.26 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=18.8
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHH
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAEL 66 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~ 66 (164)
|| +.++|.-+.|||.|..+ .=.|-....+|
T Consensus 58 Gk-~~v~~igw~gCP~~A~~-sW~L~~ALsrf 87 (249)
T PF06053_consen 58 GK-PEVIFIGWEGCPYCAAE-SWALYIALSRF 87 (249)
T ss_pred Ce-eEEEEEecccCccchhh-HHHHHHHHHhc
Confidence 55 55566667999999987 44443333444
No 233
>PTZ00062 glutaredoxin; Provisional
Probab=65.98 E-value=41 Score=25.20 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=24.2
Q ss_pred CCCcEEEEEec---CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHH-hCC
Q 045485 34 SNKKAILFAVP---GAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKEN-LGI 94 (164)
Q Consensus 34 ~g~~vvl~f~~---~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~-~~~ 94 (164)
+.++++|+--- .++||.|.+- .++ |++.|+.... +..+.-++.++.+.+ .|.
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~-----k~~---L~~~~i~y~~-~DI~~d~~~~~~l~~~sg~ 166 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAV-----VNM---LNSSGVKYET-YNIFEDPDLREELKVYSNW 166 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHH-----HHH---HHHcCCCEEE-EEcCCCHHHHHHHHHHhCC
Confidence 45566666541 1355555542 222 3345666554 444432344444433 344
No 234
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=65.77 E-value=2.1 Score=26.85 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=34.1
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGN 105 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (164)
|.+|....|+.|..- ...+.++.. +.++.+-. +..++.+ +|.++|+.. .|++.-.+
T Consensus 2 l~l~~k~~C~LC~~a-~~~L~~~~~---~~~~~l~~-vDI~~d~---~l~~~Y~~~--IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEA-KEILEEVAA---EFPFELEE-VDIDEDP---ELFEKYGYR--IPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHH-HHHHHHCCT---TSTCEEEE-EETTTTH---HHHHHSCTS--TSEEEETT
T ss_pred EEEEcCCCCChHHHH-HHHHHHHHh---hcCceEEE-EECCCCH---HHHHHhcCC--CCEEEEcC
Confidence 345557789999864 444444322 34466555 6666433 378899988 77777544
No 235
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=65.43 E-value=48 Score=25.33 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=31.2
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEE
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
+.-.+...+++++|+.++. .+.-+...+..++++.+++ .+++.
T Consensus 22 ~~~~~ai~~l~~~G~~~~i-aTGR~~~~~~~~~~~l~~~--~~~I~ 64 (272)
T PRK15126 22 EKTLSTLARLRERDITLTF-ATGRHVLEMQHILGALSLD--AYLIT 64 (272)
T ss_pred HHHHHHHHHHHHCCCEEEE-ECCCCHHHHHHHHHHcCCC--CcEEe
Confidence 3344555667889998777 7777888888899998887 44443
No 236
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=64.38 E-value=42 Score=25.40 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=30.8
Q ss_pred hHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEE
Q 045485 58 GFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
...+...+++++|+.++. .+..+...+..+.++.++. .+++.
T Consensus 20 ~~~~~i~~l~~~G~~~~i-aTGR~~~~~~~~~~~~~~~--~~~I~ 61 (256)
T TIGR00099 20 STKEALAKLREKGIKVVL-ATGRPYKEVKNILKELGLD--TPFIT 61 (256)
T ss_pred HHHHHHHHHHHCCCeEEE-EeCCCHHHHHHHHHHcCCC--CCEEE
Confidence 334555677889998777 7888888888888888876 44443
No 237
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=63.90 E-value=8.9 Score=31.84 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=20.8
Q ss_pred CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHH
Q 045485 45 GAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWK 89 (164)
Q Consensus 45 ~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~ 89 (164)
.+|||.|.+- . +-+.++|+..-- +..+......++.
T Consensus 9 ~~~Cp~C~~a-K-------~~L~~~gi~~~~-idi~~~~~~~~~~ 44 (410)
T PRK12759 9 KTNCPFCDLA-K-------SWFGANDIPFTQ-ISLDDDVKRAEFY 44 (410)
T ss_pred CCCCHHHHHH-H-------HHHHHCCCCeEE-EECCCChhHHHHH
Confidence 7899999974 2 234446777555 5554333333443
No 238
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=62.84 E-value=32 Score=20.85 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=25.5
Q ss_pred ecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEEeC
Q 045485 43 VPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND-AFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 43 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~-~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
|...+||.|.+- +. .+.++|+..-- +..+. .....+|++..+.. .+|++.|.
T Consensus 5 y~~~~sp~~~kv------~~--~L~~~gi~y~~-~~v~~~~~~~~~~~~~~p~~-~vP~l~~~ 57 (77)
T cd03041 5 YEFEGSPFCRLV------RE--VLTELELDVIL-YPCPKGSPKRDKFLEKGGKV-QVPYLVDP 57 (77)
T ss_pred ecCCCCchHHHH------HH--HHHHcCCcEEE-EECCCChHHHHHHHHhCCCC-cccEEEeC
Confidence 335679999874 22 23345554322 22222 22334565544432 47777664
No 239
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=62.79 E-value=12 Score=29.73 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=21.0
Q ss_pred ecCCCCcCCCcCchhhHHHhHHHHHhCCC
Q 045485 43 VPGAFTPTCSQKHLPGFVEKSAELKSKGV 71 (164)
Q Consensus 43 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~v 71 (164)
++.+|||.|-. ...++.+.+.+.+.++
T Consensus 16 ~~~~~CpGCg~--~~i~~~i~~al~~l~l 42 (301)
T PRK05778 16 LPTTWCPGCGN--FGILNAIIQALAELGL 42 (301)
T ss_pred CCCCCCCCCCC--hHHHHHHHHHHHHhcC
Confidence 45679999994 6888888888876543
No 240
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=62.35 E-value=31 Score=24.38 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=31.9
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..+.++..+++++|..++. ...+..+.+.+++++++..
T Consensus 53 ~sL~~L~~~L~~~g~~L~v-~~g~~~~~l~~l~~~~~~~ 90 (165)
T PF00875_consen 53 ESLADLQESLRKLGIPLLV-LRGDPEEVLPELAKEYGAT 90 (165)
T ss_dssp HHHHHHHHHHHHTTS-EEE-EESSHHHHHHHHHHHHTES
T ss_pred HHHHHHHHHHHhcCcceEE-EecchHHHHHHHHHhcCcC
Confidence 4568888899999999887 8888888999999999987
No 241
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=62.22 E-value=39 Score=22.64 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=30.4
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCC--------HHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVND--------AFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~--------~~~~~~~~~~~~~~ 95 (164)
.|.+.+..+.++++|+.++. +|... .+.++++++.+++.
T Consensus 27 ~~~v~~~l~~L~~~g~~l~i-~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 27 YPEVPDALAELKEAGYKVVI-VTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EECCccccccHHHHHHHHHHHHHCCCC
Confidence 46677788888889988666 77776 66778888888887
No 242
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=60.84 E-value=18 Score=27.73 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=35.7
Q ss_pred CCCCcCCCcCchhh--HHHhHHHHHhCCCcEEEEEecC----CHHHHHHHHHHhCCCCceEEEEe
Q 045485 45 GAFTPTCSQKHLPG--FVEKSAELKSKGVDIVACISVN----DAFVMKAWKENLGINDEVLLLSD 103 (164)
Q Consensus 45 ~~~cp~C~~~~l~~--l~~~~~~~~~~~v~vi~~is~d----~~~~~~~~~~~~~~~~~~~~l~D 103 (164)
..|+..|..+..|. ..++.+.++++|+.+.. ++.- .....+..++.+|++..|.++..
T Consensus 103 ~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~i-VTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~ 166 (237)
T TIGR01672 103 EKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFF-VTGRTPGKTDTVSKTLAKNFHIPAMNPVIFA 166 (237)
T ss_pred HHHHHhcccCCcchhHHHHHHHHHHHCCCEEEE-EeCCCCCcCHHHHHHHHHHhCCchheeEEEC
Confidence 44444443333455 78888889999998665 6654 33345666677888644555543
No 243
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=60.67 E-value=6 Score=22.58 Aligned_cols=10 Identities=10% Similarity=-0.111 Sum_probs=7.5
Q ss_pred CCCCcCCCcC
Q 045485 45 GAFTPTCSQK 54 (164)
Q Consensus 45 ~~~cp~C~~~ 54 (164)
..+||.|.+-
T Consensus 6 ~~~~~~~~~~ 15 (71)
T cd00570 6 FPGSPRSLRV 15 (71)
T ss_pred CCCCccHHHH
Confidence 4579999864
No 244
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=59.71 E-value=20 Score=27.57 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=34.7
Q ss_pred HhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc
Q 045485 61 EKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGN 105 (164)
Q Consensus 61 ~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (164)
..+.++++.|+.||. .|.-+..++..+.+..+++ +.|+++-..
T Consensus 30 pv~~el~d~G~~Vi~-~SSKT~aE~~~l~~~l~v~-~~p~iaEnG 72 (274)
T COG3769 30 PVLLELKDAGVPVIL-CSSKTRAEMLYLQKSLGVQ-GLPLIAENG 72 (274)
T ss_pred hHHHHHHHcCCeEEE-eccchHHHHHHHHHhcCCC-CCceeecCC
Confidence 445677889999999 8888989999999999987 577777544
No 245
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=57.86 E-value=11 Score=22.53 Aligned_cols=33 Identities=27% Similarity=0.647 Sum_probs=23.8
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
|..|.-||-|... +-.+-+++.+|.++-++...
T Consensus 7 FIAGA~CP~C~~~------Dtl~mW~En~ve~vECV~CG 39 (66)
T COG3529 7 FIAGAVCPACQAQ------DTLAMWRENNVEIVECVKCG 39 (66)
T ss_pred hhccCCCcccchh------hHHHHHHhcCCceEehhhcc
Confidence 5567889999975 44455677899988876543
No 246
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=57.67 E-value=1.5 Score=33.48 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=26.7
Q ss_pred hhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcE
Q 045485 31 DLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDI 73 (164)
Q Consensus 31 d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~v 73 (164)
++.+|.+. |.|+ ++|||-|... .+.+.....--.+.+|.+
T Consensus 36 ~~l~gewm-i~~~-ap~~psc~~~-~~~~~~~a~~s~dL~v~v 75 (248)
T KOG0913|consen 36 ELLTGEWM-IEFG-APWCPSCSDL-IPHLENFATVSLDLGVKV 75 (248)
T ss_pred hhhchHHH-HHhc-CCCCccccch-HHHHhccCCccCCCceeE
Confidence 45456654 4555 8999999997 888877765444455543
No 247
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=57.64 E-value=30 Score=22.43 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=31.9
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGI 94 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~ 94 (164)
.+.+.+..+++++.|+.++. +|......+..++++.++
T Consensus 26 ~~~~~~~l~~l~~~g~~i~i-vS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIKLAL-ATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEE-EeCchHHHHHHHHHHcCC
Confidence 57778888889888988766 888888888999998887
No 248
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=56.76 E-value=12 Score=29.43 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=20.5
Q ss_pred ecCCCCcCCCcCchhhHHHhHHHHHhCC
Q 045485 43 VPGAFTPTCSQKHLPGFVEKSAELKSKG 70 (164)
Q Consensus 43 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~ 70 (164)
++-.|||.|-. -.-+..+.+.+.+.+
T Consensus 6 ~~~~~CpGCg~--~~i~~~~~~a~~~l~ 31 (280)
T PRK11869 6 YDIAWCPGCGN--FGIRNALMKALSELN 31 (280)
T ss_pred CCCCCCcCCCC--HHHHHHHHHHHHHcC
Confidence 56789999993 688888888887654
No 249
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=56.21 E-value=42 Score=21.83 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=31.8
Q ss_pred EEEEEecCCHHHHHHHHHHhCCCCceE---EEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEE
Q 045485 73 IVACISVNDAFVMKAWKENLGINDEVL---LLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVL 144 (164)
Q Consensus 73 vi~~is~d~~~~~~~~~~~~~~~~~~~---~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~ 144 (164)
.+. +..++.++..+-++..|.+ +. +...+ ..+.+|. +..++.||||.+..+
T Consensus 58 ~~~-~~v~did~~~~~l~~~G~~--~~~~~~~~~~---~~~~~g~---------------r~f~~~DPdGn~~~~ 111 (113)
T cd08356 58 MLH-LEVDDLEAYYEHIKALGLP--KKFPGVKLPP---ITQPWWG---------------REFFLHDPSGVLWHI 111 (113)
T ss_pred EEE-EEECCHHHHHHHHHHcCCc--ccccceecCc---cccCCCc---------------EEEEEECCCccEEEe
Confidence 456 7788888888888888876 31 11111 1111221 558999999998764
No 250
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=56.05 E-value=24 Score=25.48 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=43.6
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeC------c--chHHHHhCCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDG------N--GVFTKAIGCE 115 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~------~--~~~~~~~gv~ 115 (164)
.+...+..+++++.|+.+.. ++.|+........++.|+. ...+.++. . ..+.+++++.
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i-~TGD~~~~a~~~~~~lgi~-~~~v~a~~~~kP~~k~~~~~i~~l~~~ 194 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAI-LTGDNESTASAIAKQLGIF-DSIVFARVIGKPEPKIFLRIIKELQVK 194 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEE-EESSEHHHHHHHHHHTTSC-SEEEEESHETTTHHHHHHHHHHHHTCT
T ss_pred hhhhhhhhhhhhccCcceee-eeccccccccccccccccc-cccccccccccccchhHHHHHHHHhcC
Confidence 56677888889999998777 9999999999999999995 24454443 2 4566777764
No 251
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=54.53 E-value=7.1 Score=26.03 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=25.3
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCc--EEEEEec-CCHHHHHHHHHHh
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVD--IVACISV-NDAFVMKAWKENL 92 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~--vi~~is~-d~~~~~~~~~~~~ 92 (164)
..++|| +|- .+|||+|.+- +++... .++. ++- +-. +...++++++.+.
T Consensus 12 ~~~~VV-ifS-Ks~C~~c~~~-----k~ll~~---~~v~~~vvE-LD~~~~g~eiq~~l~~~ 62 (104)
T KOG1752|consen 12 SENPVV-IFS-KSSCPYCHRA-----KELLSD---LGVNPKVVE-LDEDEDGSEIQKALKKL 62 (104)
T ss_pred hcCCEE-EEE-CCcCchHHHH-----HHHHHh---CCCCCEEEE-ccCCCCcHHHHHHHHHh
Confidence 455565 444 6899999973 333333 3433 333 222 2344666666644
No 252
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=54.12 E-value=27 Score=26.48 Aligned_cols=39 Identities=8% Similarity=-0.008 Sum_probs=32.7
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|.+.++.+++.++|+.++. .|.-+...++++.+++++.
T Consensus 23 ~~~~~~~i~~~~~~gi~fv~-aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 23 LLRLNALLEDHRGEDSLLVY-STGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHHHHhhccCceEEE-EcCCCHHHHHHHHhcCCCC
Confidence 78888888889999987776 7888888888888888765
No 253
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=53.91 E-value=13 Score=25.02 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=39.6
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhh---HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHH
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPG---FVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTK 110 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~---l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 110 (164)
+|..+++ -.++..|+.|-.+ .-. ..++...+.+.-... -..-.+.+++.++++.|++ ..++++
T Consensus 21 ~G~~~~v-~~~~~~C~~CGe~-~~~~e~~~~~~~~i~~~~~~~---~~~~~~~~i~~~r~~~glt---------q~~lA~ 86 (127)
T TIGR03830 21 KGESITI-GVPGWYCPACGEE-LLDPEESKRNSAALADFYRKV---DGLLTPPEIRRIRKKLGLS---------QREAAE 86 (127)
T ss_pred cCEEEEE-eeeeeECCCCCCE-EEcHHHHHHHHHHHHHHHHHc---cCCcCHHHHHHHHHHcCCC---------HHHHHH
Confidence 5665555 5567789999543 221 122222221110110 1234567888999999998 567888
Q ss_pred HhCCcc
Q 045485 111 AIGCEL 116 (164)
Q Consensus 111 ~~gv~~ 116 (164)
.+|+..
T Consensus 87 ~lg~~~ 92 (127)
T TIGR03830 87 LLGGGV 92 (127)
T ss_pred HhCCCH
Confidence 888763
No 254
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=53.07 E-value=15 Score=26.12 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=13.3
Q ss_pred CcceeEEEEEecCCcEEE
Q 045485 126 GVRSRRYALLAENGVVKV 143 (164)
Q Consensus 126 ~~~~p~~~lid~~G~I~~ 143 (164)
|+|.-..|+||+.|+|..
T Consensus 139 gi~~~~i~~i~~~~~~~~ 156 (157)
T smart00775 139 GIPPSRIFTINPKGEVHQ 156 (157)
T ss_pred CCChhhEEEECCCCcccc
Confidence 344456999999999863
No 255
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=52.23 E-value=53 Score=24.41 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=37.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEE
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
.|.+.+..+.++++|+. ++|++..+...+...++.+|+...|..+.
T Consensus 91 ~~gv~e~L~~L~~~g~~-l~i~T~k~~~~~~~~l~~~gl~~~F~~i~ 136 (220)
T COG0546 91 FPGVKELLAALKSAGYK-LGIVTNKPERELDILLKALGLADYFDVIV 136 (220)
T ss_pred CCCHHHHHHHHHhCCCe-EEEEeCCcHHHHHHHHHHhCCccccceEE
Confidence 78888999999999987 45488888889999999999875554443
No 256
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=52.14 E-value=28 Score=23.87 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=31.9
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|.+.++...++++|+.++. +|..+...+...++++++.
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i-~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVI-VSNGSRERIERVLERLGLD 117 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEE-EESSEHHHHHHHHHHTTHG
T ss_pred hhhhhhhhhhcccccceeEE-eecCCcccccccccccccc
Confidence 46777888888888998777 8888888888888888865
No 257
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=52.07 E-value=24 Score=24.65 Aligned_cols=60 Identities=8% Similarity=0.240 Sum_probs=37.7
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEE
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLL 100 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~ 100 (164)
..|.+||-|- -.|-|.|... =.-|.+.+++. ++..+|.++..+.. ..|.+-+++..++.+
T Consensus 19 ~drvvViRFG-~d~d~~Cm~m-DeiL~~~a~~v--~~~a~IY~vDi~~V---pdfn~~yel~dP~tv 78 (133)
T PF02966_consen 19 EDRVVVIRFG-RDWDPVCMQM-DEILYKIAEKV--KNFAVIYLVDIDEV---PDFNQMYELYDPCTV 78 (133)
T ss_dssp SSSEEEEEEE--TTSHHHHHH-HHHHHHHHHHH--TTTEEEEEEETTTT---HCCHHHTTS-SSEEE
T ss_pred CceEEEEEeC-CCCCccHHHH-HHHHHHHHHHh--hcceEEEEEEcccc---hhhhcccccCCCeEE
Confidence 3577777776 6899999975 56667777766 56666775666533 346666665433433
No 258
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=51.79 E-value=16 Score=21.43 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=8.6
Q ss_pred ecCCCCcCCCcC
Q 045485 43 VPGAFTPTCSQK 54 (164)
Q Consensus 43 ~~~~~cp~C~~~ 54 (164)
|...+||.|.+-
T Consensus 4 y~~~~s~~~~~~ 15 (74)
T cd03051 4 YDSPTAPNPRRV 15 (74)
T ss_pred EeCCCCcchHHH
Confidence 335689999874
No 259
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.70 E-value=94 Score=25.08 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=54.4
Q ss_pred CcEEEEEe----cCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCce-EEEEeCcchHHH
Q 045485 36 KKAILFAV----PGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEV-LLLSDGNGVFTK 110 (164)
Q Consensus 36 ~~vvl~f~----~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~-~~l~D~~~~~~~ 110 (164)
.+.+|++| +..-|+.|..+ ..+++-+.+.++..+- ++ .|....| .+=.|...++.+
T Consensus 60 Nys~IvmftA~~~~~~C~lC~~~-~~Ef~iva~S~r~~~~--------~s----------n~tklFF~~Vd~~e~p~~Fq 120 (331)
T KOG2603|consen 60 NYSLIVMFTALQPHSQCQLCLQA-EEEFQIVANSWRYNSP--------FS----------NGTKLFFCMVDYDESPQVFQ 120 (331)
T ss_pred CeEEEEEccccCCCCcCchhhhH-HHHHHHHHHHhhccCC--------CC----------CcceEEEEEEeccccHHHHH
Confidence 35677777 35679999986 6888777777753221 11 1111012 222234567888
Q ss_pred HhCCccccCCCCCCCCcceeEEEEEec-CCcEEEEEeecCCceeecCHHHHHh
Q 045485 111 AIGCELDLSDKPMGLGVRSRRYALLAE-NGVVKVLNLEEGGAFTFSGAEDMLK 162 (164)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~p~~~lid~-~G~I~~~~~~~~~~~~~~~~~~~l~ 162 (164)
++++... |+.+++.| .|++++...-+...... +||.+++
T Consensus 121 ~l~ln~~------------P~l~~f~P~~~n~~~s~~~d~~~~g~-~Ae~iaq 160 (331)
T KOG2603|consen 121 QLNLNNV------------PHLVLFSPAKGNKKRSDQMDQQDLGF-EAEQIAQ 160 (331)
T ss_pred HhcccCC------------CeEEEeCCCccccccCccchhhhcch-hHHHHHH
Confidence 8888732 66888875 57777443333333333 3777665
No 260
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=50.85 E-value=50 Score=26.44 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=35.9
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGN 105 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (164)
|.+.+..++++++|+. ++|+|..+.+.+...++..++...|.++.-.+
T Consensus 151 p~V~EtL~eLkekGik-LaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g 198 (303)
T PHA03398 151 PFVYDSLDELKERGCV-LVLWSYGNREHVVHSLKETKLEGYFDIIICGG 198 (303)
T ss_pred hhHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHcCCCccccEEEECC
Confidence 7788899999999986 44377777777888999999874565444433
No 261
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=50.67 E-value=57 Score=26.71 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=47.0
Q ss_pred CCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHH----------HHHHHHHhCCCCceEEEEeCcchHHHHhCCccccC
Q 045485 50 TCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFV----------MKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLS 119 (164)
Q Consensus 50 ~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~----------~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~ 119 (164)
+|..|.+.-+........ ..+.+|. ||..+-+. ++.|..-.+-+ ..++...|..++++|.-.
T Consensus 57 P~KdE~l~lleGVL~gIP-h~c~iIv-VSNS~r~~~d~f~~E~d~~~~f~~~t~r~--~i~vHQkDp~la~Af~~~---- 128 (381)
T TIGR02460 57 PVKNEKLHLLEGVLSGIP-HECPIII-VSNSKREPPDRFKMEVDLIRHFSNLTHRK--IIIIHQKDPALAEAFKEV---- 128 (381)
T ss_pred EcCCCchhHHhhHhhcCC-CCCeEEE-EeCCCCCChhHHHHHHHHHHHHHHhhcCc--eEEEEcCCHHHHHHHHHc----
Confidence 577775555555555554 4566666 77653222 33343333334 788888888999888764
Q ss_pred CCCCCCCcceeEEEEEecCCcEEE
Q 045485 120 DKPMGLGVRSRRYALLAENGVVKV 143 (164)
Q Consensus 120 ~~~~~~~~~~p~~~lid~~G~I~~ 143 (164)
|+| .++|.+|.|+.
T Consensus 129 ------gy~----~il~~~g~VR~ 142 (381)
T TIGR02460 129 ------GYT----SILGENGRVRS 142 (381)
T ss_pred ------Cch----hhhCCCCceec
Confidence 443 46788888764
No 262
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=50.63 E-value=84 Score=24.40 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=15.6
Q ss_pred HHHHhCCCcEEEEEecC-----CHHHHHHHHHHhCCC
Q 045485 64 AELKSKGVDIVACISVN-----DAFVMKAWKENLGIN 95 (164)
Q Consensus 64 ~~~~~~~v~vi~~is~d-----~~~~~~~~~~~~~~~ 95 (164)
+.+++.|..++. ++.+ +.++..+.+++.+.+
T Consensus 47 ~~i~~~g~~v~~-~~~~~~~~~d~~~~~~~l~~~~~d 82 (279)
T TIGR03590 47 DLLLSAGFPVYE-LPDESSRYDDALELINLLEEEKFD 82 (279)
T ss_pred HHHHHcCCeEEE-ecCCCchhhhHHHHHHHHHhcCCC
Confidence 344556766666 4332 133445555555544
No 263
>PHA03075 glutaredoxin-like protein; Provisional
Probab=50.51 E-value=5.8 Score=27.04 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHH
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELK 67 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~ 67 (164)
|.++|.|- .+.|+.|... ...+.++.+++.
T Consensus 2 K~tLILfG-KP~C~vCe~~-s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFG-KPLCSVCESI-SEALKELEDEYD 31 (123)
T ss_pred CceEEEeC-CcccHHHHHH-HHHHHHhhcccc
Confidence 34666665 7899999986 666666666553
No 264
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=49.93 E-value=49 Score=20.76 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=29.7
Q ss_pred EEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEE
Q 045485 73 IVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVL 144 (164)
Q Consensus 73 vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~ 144 (164)
.+. +..++.+++.+.+++.|.+ ++.++.. ..+|. +..++.|++|.+...
T Consensus 59 ~~~-~~v~dv~~~~~~l~~~G~~----~~~~~~~---~~~g~---------------~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 59 HLC-FEVEDVDALYERLKELGAE----IVTEPRD---DPWGQ---------------RSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEE-EEESHHHHHHHHHHHTTSE----EEEEEEE---ETTSE---------------EEEEEE-TTS-EEEE
T ss_pred EEE-EEEcCHHHHHHHHHHCCCe----EeeCCEE---cCCCe---------------EEEEEECCCCCEEEe
Confidence 345 5668888888888888765 3333322 11221 458999999988654
No 265
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=49.92 E-value=51 Score=23.91 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=32.1
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCce
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEV 98 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~ 98 (164)
.|...++.+.++++|+.+.. +|..+...+..+++++++...|
T Consensus 87 ~~g~~~~L~~l~~~g~~~~i-~S~~~~~~~~~~l~~~~l~~~f 128 (213)
T TIGR01449 87 FPGVEATLGALRAKGLRLGL-VTNKPTPLARPLLELLGLAKYF 128 (213)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCCHHHHHHHHHHcCcHhhC
Confidence 46677788888888987555 8888888888999998875334
No 266
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=49.73 E-value=7.7 Score=23.06 Aligned_cols=12 Identities=8% Similarity=-0.061 Sum_probs=8.2
Q ss_pred ecCCCCcCCCcC
Q 045485 43 VPGAFTPTCSQK 54 (164)
Q Consensus 43 ~~~~~cp~C~~~ 54 (164)
|...+||.|.+-
T Consensus 4 y~~~~~~~~~~v 15 (73)
T cd03059 4 YSGPDDVYSHRV 15 (73)
T ss_pred EECCCChhHHHH
Confidence 335679988874
No 267
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=49.53 E-value=60 Score=26.75 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=47.1
Q ss_pred CCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHH----------HHHHHHHhCCCCceEEEEeCcchHHHHhCCccccC
Q 045485 50 TCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFV----------MKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLS 119 (164)
Q Consensus 50 ~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~----------~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~ 119 (164)
+|..|.+.-+........ -.+.+|. ||..+-+. ++.|..-..-+ ..++...|..++++|.-.
T Consensus 58 P~KdE~l~lleGVL~gIP-h~c~iIv-VSNS~r~~~d~f~~E~dlv~~f~~~t~r~--~i~vHQkDp~la~Af~~a---- 129 (393)
T PRK14503 58 PVKNERLKLLEGVLKGIP-HECPIIV-VSNSKREPPDRFKLEVDLVRHFYRLTQRP--IIIVHQKDPGLAEALKEA---- 129 (393)
T ss_pred EcCCCchhHHhhHhhcCC-CCCeEEE-EeCCCCCCchHHHHHHHHHHHHHhhhcCc--eEEEEcCCHHHHHHHHHc----
Confidence 577775555566655554 4566666 77653222 33333333334 788888888999888764
Q ss_pred CCCCCCCcceeEEEEEecCCcEEE
Q 045485 120 DKPMGLGVRSRRYALLAENGVVKV 143 (164)
Q Consensus 120 ~~~~~~~~~~p~~~lid~~G~I~~ 143 (164)
|+| .++|.+|.|+.
T Consensus 130 ------Gyp----~il~~~g~VR~ 143 (393)
T PRK14503 130 ------GYP----YILDENGLVRS 143 (393)
T ss_pred ------CCh----hhhCCCCceec
Confidence 443 57788888764
No 268
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=49.41 E-value=21 Score=25.61 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=24.0
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcE
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDI 73 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~v 73 (164)
|.||.-..||.|-.- .+.+.++.+++. .++.+
T Consensus 3 i~~~~D~~cp~c~~~-~~~l~~l~~~~~-~~~~v 34 (193)
T cd03025 3 LYYFIDPLCGWCYGF-EPLLEKLKEEYG-GGIEV 34 (193)
T ss_pred EEEEECCCCchhhCc-hHHHHHHHHHhC-CCceE
Confidence 445558889999997 899999988873 34544
No 269
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=49.31 E-value=51 Score=25.79 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=12.3
Q ss_pred HHhHHHHHhCCCcEEEEEecCC
Q 045485 60 VEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 60 ~~~~~~~~~~~v~vi~~is~d~ 81 (164)
....++++++|+.++. |..|+
T Consensus 184 ~~~~r~a~e~~i~l~~-I~ld~ 204 (266)
T cd01460 184 KVRLREAREQNVFVVF-IIIDN 204 (266)
T ss_pred HHHHHHHHHcCCeEEE-EEEcC
Confidence 3445666677777666 44443
No 270
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=49.26 E-value=18 Score=28.68 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=17.8
Q ss_pred CCCcCCCcCchhhHHHhHHHHHhCC
Q 045485 46 AFTPTCSQKHLPGFVEKSAELKSKG 70 (164)
Q Consensus 46 ~~cp~C~~~~l~~l~~~~~~~~~~~ 70 (164)
.|||.|-. ..-+..+.+.+.+.+
T Consensus 2 ~~CpGCg~--~~i~~~~~~a~~~l~ 24 (287)
T TIGR02177 2 DWCPGCGD--FGILSALQRALAELN 24 (287)
T ss_pred CcCCCCCC--hHHHHHHHHHHHHhc
Confidence 59999994 678888888886654
No 271
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=49.19 E-value=32 Score=29.27 Aligned_cols=52 Identities=8% Similarity=-0.008 Sum_probs=29.3
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCC
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGI 94 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~ 94 (164)
+++-|..|-+..||+|+.- ...++++.... ..+..-. + |. ....++.++|++
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~-v~~~~~~a~~~--~~i~~~~-i--d~-~~~~~~~~~~~v 167 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDV-VQALNLMAVLN--PNITHTM-I--DG-ALFQDEVEARNI 167 (517)
T ss_pred CCeEEEEEEcCCCCCcHHH-HHHHHHHHHhC--CCceEEE-E--Ec-hhCHhHHHhcCC
Confidence 5564555558999999975 66666665432 3454333 3 21 222345555554
No 272
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=49.01 E-value=74 Score=23.25 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=34.4
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLL 101 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (164)
.|...++.+.++++|+.+.. +|......+...++..|+...|..+
T Consensus 84 ~~g~~~~l~~L~~~g~~~~i-~S~~~~~~~~~~l~~~gl~~~f~~i 128 (214)
T PRK13288 84 YETVYETLKTLKKQGYKLGI-VTTKMRDTVEMGLKLTGLDEFFDVV 128 (214)
T ss_pred CcCHHHHHHHHHHCCCeEEE-EeCCCHHHHHHHHHHcCChhceeEE
Confidence 57788888899988987444 8888888888888988887444333
No 273
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=48.90 E-value=11 Score=29.04 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=20.6
Q ss_pred EEEEEecCCcEEEEEeecCCceeecCHHHHH
Q 045485 131 RYALLAENGVVKVLNLEEGGAFTFSGAEDML 161 (164)
Q Consensus 131 ~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l 161 (164)
-+|+||+.|+|++...|+.+ ..+.|.++
T Consensus 250 yV~L~D~s~kIRW~g~G~aT---p~Eve~L~ 277 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTAT---PEEVEQLL 277 (287)
T ss_pred EEEEEccCceEEEeecCCCC---HHHHHHHH
Confidence 38999999999999987654 34445443
No 274
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=48.58 E-value=65 Score=22.51 Aligned_cols=91 Identities=16% Similarity=0.075 Sum_probs=42.0
Q ss_pred HHhHHHHH-hCCCcEEEEEecC-------CHHHHHHHHHHhCCCCceEEEEeCcchHH---HHhCCccccCCCCCCCCcc
Q 045485 60 VEKSAELK-SKGVDIVACISVN-------DAFVMKAWKENLGINDEVLLLSDGNGVFT---KAIGCELDLSDKPMGLGVR 128 (164)
Q Consensus 60 ~~~~~~~~-~~~v~vi~~is~d-------~~~~~~~~~~~~~~~~~~~~l~D~~~~~~---~~~gv~~~~~~~~~~~~~~ 128 (164)
.+.-+.++ ..|..+|.|.|.= -|............+....+++..|.+.. +.|=... -|
T Consensus 25 e~Vd~~~~~~~GTtlVvVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~----------pP 94 (136)
T PF06491_consen 25 EEVDEALKNKEGTTLVVVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPY----------PP 94 (136)
T ss_dssp HHHHHHHHH--SEEEEEEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS------------
T ss_pred HHHHHHHhCCCCcEEEEEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCC----------CC
Confidence 34445555 6777777755542 13322222221221113667776664443 3332221 13
Q ss_pred eeEEEEEecCCcEEEEEeecCCceeecCHHHHHh
Q 045485 129 SRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLK 162 (164)
Q Consensus 129 ~p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~ 162 (164)
+..++-+=+||+++|.--- -.+...+++.+.+
T Consensus 95 SSPS~ALfKdGelvh~ieR--h~IEGr~a~~Ia~ 126 (136)
T PF06491_consen 95 SSPSIALFKDGELVHFIER--HHIEGRPAEEIAE 126 (136)
T ss_dssp -SSEEEEEETTEEEEEE-G--GGTTTS-HHHHHH
T ss_pred CCchheeeeCCEEEEEeeh--hhcCCCCHHHHHH
Confidence 3447888899999886532 1345555666544
No 275
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=48.07 E-value=48 Score=23.10 Aligned_cols=54 Identities=6% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.+.+||-|- -.|-|.|... =.-|.+..+.. .+..+|.++-.| +...|.+-+++.
T Consensus 23 ~rlvViRFG-r~~Dp~C~~m-D~~L~~i~~~v--snfa~Iylvdid---eV~~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFG-RDWDPTCMKM-DELLSSIAEDV--SNFAVIYLVDID---EVPDFVKMYELY 76 (142)
T ss_pred ceEEEEEec-CCCCchHhhH-HHHHHHHHHHH--hhceEEEEEecc---hhhhhhhhhccc
Confidence 466666676 5899999975 56667777777 456666655555 445666666665
No 276
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=47.10 E-value=81 Score=25.24 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=34.7
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEE
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
|.+.+..++++++|+.+.. +|....+...+.+++.|+...|..+.
T Consensus 149 PgV~EaL~~LkekGikLaI-aTS~~Re~v~~~L~~lGLd~YFdvII 193 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVL-WSYGDRDHVVESMRKVKLDRYFDIII 193 (301)
T ss_pred HHHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHHHcCCCcccCEEE
Confidence 7888999999999987444 77777777888999999874454443
No 277
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=47.00 E-value=82 Score=20.86 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=27.3
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.+++.+..+..+++|+.+|+ ++.+.+ +.++.++.+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~-IT~~~~--l~~~~~~~~~~ 92 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVA-ITSGGK--LLEMAREHGVP 92 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEE-EeCCch--HHHHHHHcCCc
Confidence 56777777788889999999 776653 66777766543
No 278
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=46.90 E-value=47 Score=20.09 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=26.4
Q ss_pred CCceeeeehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHh-HHHHH
Q 045485 21 AGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEK-SAELK 67 (164)
Q Consensus 21 ~g~~~~~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~-~~~~~ 67 (164)
+|.. +.+-++ ++..+.|-+- |+ |..|... .-.+... .+.++
T Consensus 15 dGGd--v~lv~v-~~~~V~V~l~-Ga-C~gC~~s-~~Tl~~~Ie~~L~ 56 (68)
T PF01106_consen 15 DGGD--VELVDV-DDGVVYVRLT-GA-CSGCPSS-DMTLKQGIEQALR 56 (68)
T ss_dssp TTEE--EEEEEE-ETTEEEEEEE-SS-CCSSCCH-HHHHHHHHHHHHH
T ss_pred cCCc--EEEEEe-cCCEEEEEEE-eC-CCCCCCH-HHHHHHHHHHHHH
Confidence 5655 899999 5665555553 54 9999886 6666333 34444
No 279
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=46.64 E-value=64 Score=20.02 Aligned_cols=47 Identities=21% Similarity=0.076 Sum_probs=24.1
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
.....+++..+++.|+.+..-....+....-++.++.|.+ |.++.+.
T Consensus 17 ~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~--~~iiiG~ 63 (94)
T cd00861 17 QELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIP--YRIVVGK 63 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCC--EEEEECC
Confidence 3444555666666666544312233444444555566666 6555543
No 280
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=46.63 E-value=41 Score=28.63 Aligned_cols=29 Identities=3% Similarity=-0.022 Sum_probs=18.6
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHH
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAE 65 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~ 65 (164)
+++-|..|.+..||+|+.- ...++++...
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~-v~~~~~~a~~ 145 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDV-VQALNQMALL 145 (515)
T ss_pred CCeEEEEEEeCCCCCCHHH-HHHHHHHHHh
Confidence 4554444448899999975 6666555443
No 281
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.55 E-value=30 Score=26.08 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=24.3
Q ss_pred eehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHH
Q 045485 27 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAEL 66 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~ 66 (164)
+.+.+. .++..++.|+ -.-||.|... .+.+.+.+...
T Consensus 77 ~~~G~~-~~~v~v~~f~-d~~Cp~C~~~-~~~l~~~~i~~ 113 (244)
T COG1651 77 VVLGNP-YAPVTVVEFF-DYTCPYCKEA-FPELKKKYIDD 113 (244)
T ss_pred ccccCC-CCCceEEEEe-cCcCccHHHH-HHHHHHHhhhc
Confidence 444444 3455555555 7889999876 88888855444
No 282
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=46.53 E-value=78 Score=27.30 Aligned_cols=30 Identities=17% Similarity=0.046 Sum_probs=17.3
Q ss_pred cchHHHHhCCccccCCCCCCCCcceeEEEEEecCC---cEEEEEe
Q 045485 105 NGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENG---VVKVLNL 146 (164)
Q Consensus 105 ~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G---~I~~~~~ 146 (164)
+...++.|++... |++.+++.+| .|+|.-+
T Consensus 408 ~~~~~~~~~v~~~------------P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 408 EPESETLPKITKL------------PTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred chhhHhhcCCCcC------------CEEEEEeCCCcccceEEEec
Confidence 3566677776532 5566666554 3666554
No 283
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=46.46 E-value=76 Score=20.58 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=26.6
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecC---CHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVN---DAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d---~~~~~~~~~~~~~~~ 95 (164)
+|.-.+..+.++++|..++. ++.+ ++++..+.+++.|++
T Consensus 16 ipga~e~l~~L~~~g~~~~~-lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVF-LTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEE-EES-SSS-HHHHHHHHHHTTTT
T ss_pred CcCHHHHHHHHHHcCCCEEE-EeCCCCCCHHHHHHHHHhcCcC
Confidence 56667777888888888777 7665 356666666777776
No 284
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=46.26 E-value=60 Score=23.37 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=31.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|...++.+.++++|+.+.. +|..+...+...+++.|+.
T Consensus 94 ~~~~~~~L~~L~~~g~~~~i-~Sn~~~~~~~~~l~~~gl~ 132 (198)
T TIGR01428 94 HPDVPAGLRALKERGYRLAI-LSNGSPAMLKSLVKHAGLD 132 (198)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCCHHHHHHHHHHCCCh
Confidence 46777888888888987655 8888878888888888874
No 285
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.23 E-value=72 Score=28.40 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=26.7
Q ss_pred CcceeEEEEEecCCcEEEEEee--cCCceeecCHHHHHhhC
Q 045485 126 GVRSRRYALLAENGVVKVLNLE--EGGAFTFSGAEDMLKAL 164 (164)
Q Consensus 126 ~~~~p~~~lid~~G~I~~~~~~--~~~~~~~~~~~~~l~~l 164 (164)
|.|- ++++-|||+..+...+ +.+...++...++|+++
T Consensus 108 GWPL--tVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i 146 (667)
T COG1331 108 GWPL--TVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAI 146 (667)
T ss_pred CCce--eEEECCCCceeeeeeecCCcccCCCcCHHHHHHHH
Confidence 5555 9999999999888776 23345567777777753
No 286
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=45.72 E-value=17 Score=29.79 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH----------HHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 50 TCSQKHLPGFVEKSAELKSKGVDIVACISVNDA----------FVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 50 ~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~----------~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
+|..|.+.-+........ ..+.+|. ||..+. +.+++|....+-+ ..++...|..++++|.-.
T Consensus 57 P~KnE~l~lleGVL~gIP-h~C~IIv-VSNS~r~~~d~f~~E~d~l~~f~~~t~r~--~~~vHQkDp~lA~Af~~a 128 (381)
T PF09488_consen 57 PCKNEKLKLLEGVLSGIP-HDCLIIV-VSNSSREPVDRFKMEVDLLKHFCRLTRRQ--IIIVHQKDPGLAEAFKEA 128 (381)
T ss_dssp EESS--HHHHHHHHHCS--TTSEEEE-EE---CSSSCHHHHHHHHHHHHHHHCT----EEEEETT-HHHHHHHHHT
T ss_pred ECCCCchhhhhhhhhcCC-CCCeEEE-EECCCCCCccHHHHHHHHHHHHHHhhcCc--eEEEecCCHHHHHHHHHc
Confidence 577776666666666655 5677777 776532 3345555544445 888888888888888754
No 287
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=45.36 E-value=62 Score=24.77 Aligned_cols=40 Identities=18% Similarity=0.084 Sum_probs=31.7
Q ss_pred chhhHHHhHHHHHhCCCcEEEEEecCCH---HHHHHHHHHhCCC
Q 045485 55 HLPGFVEKSAELKSKGVDIVACISVNDA---FVMKAWKENLGIN 95 (164)
Q Consensus 55 ~l~~l~~~~~~~~~~~v~vi~~is~d~~---~~~~~~~~~~~~~ 95 (164)
.+|...++.+.++++|+.|+. +|.=+. +...+++.+.|++
T Consensus 121 aip~al~l~~~l~~~G~~Vf~-lTGR~e~~r~~T~~nL~~~G~~ 163 (229)
T TIGR01675 121 ALPEGLKLYQKIIELGIKIFL-LSGRWEELRNATLDNLINAGFT 163 (229)
T ss_pred CCHHHHHHHHHHHHCCCEEEE-EcCCChHHHHHHHHHHHHcCCC
Confidence 378889999999999999888 665443 3367888888887
No 288
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=44.29 E-value=89 Score=20.84 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=38.5
Q ss_pred ehhhhcCC-CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec----C-------CHHHHHHHHHHh-CC
Q 045485 28 TVSDLTSN-KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV----N-------DAFVMKAWKENL-GI 94 (164)
Q Consensus 28 ~l~d~~~g-~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~----d-------~~~~~~~~~~~~-~~ 94 (164)
.+++| ++ ..-++-|+. |..|.. ..+..+.+.+.+.|+.+|. ++. + ..+.+.+.+++. |+
T Consensus 29 ~F~~y-~~~~~elvgf~~---CgGCpg---~~~~~~~~~l~~~~~d~IH-lssC~~~~~~~~~CP~~~~~~~~I~~~~gi 100 (107)
T PF08821_consen 29 AFARY-DDEDVELVGFFT---CGGCPG---RKLVRRIKKLKKNGADVIH-LSSCMVKGNPHGPCPHIDEIKKIIEEKFGI 100 (107)
T ss_pred ccccC-CCCCeEEEEEee---CCCCCh---hHHHHHHHHHHHCCCCEEE-EcCCEecCCCCCCCCCHHHHHHHHHHHhCC
Confidence 45566 43 345666663 888872 5677777888899999888 543 1 245666666555 55
Q ss_pred C
Q 045485 95 N 95 (164)
Q Consensus 95 ~ 95 (164)
+
T Consensus 101 ~ 101 (107)
T PF08821_consen 101 E 101 (107)
T ss_pred C
Confidence 4
No 289
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=44.08 E-value=1.1e+02 Score=23.29 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=25.6
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCC-------HHHHHHHHHHhCCCCceEEEEeC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVND-------AFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~-------~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
...|+..+++++++|..|.- +..++ .+.+.+++++++.. -..+.+|
T Consensus 48 ~saMRhfa~~L~~~G~~V~Y-~~~~~~~~~~s~~~~L~~~~~~~~~~--~~~~~~P 100 (224)
T PF04244_consen 48 FSAMRHFADELRAKGFRVHY-IELDDPENTQSFEDALARALKQHGID--RLHVMEP 100 (224)
T ss_dssp HHHHHHHHHHHHHTT--EEE-E-TT-TT--SSHHHHHHHHHHHH------EEEE--
T ss_pred HHHHHHHHHHHHhCCCEEEE-EeCCCccccccHHHHHHHHHHHcCCC--EEEEECC
Confidence 45566677888889988887 65552 46677888888877 4555555
No 290
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=44.02 E-value=27 Score=21.85 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.7
Q ss_pred EEEEEecCCcEEEEEe
Q 045485 131 RYALLAENGVVKVLNL 146 (164)
Q Consensus 131 ~~~lid~~G~I~~~~~ 146 (164)
+.+++|++|+|.+...
T Consensus 13 ~i~~~d~~g~I~~~N~ 28 (113)
T PF00989_consen 13 GIFVIDEDGRILYVNQ 28 (113)
T ss_dssp EEEEEETTSBEEEECH
T ss_pred eEEEEeCcCeEEEECH
Confidence 4899999999988764
No 291
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=43.58 E-value=70 Score=21.98 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=27.1
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCH---------------HHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDA---------------FVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~---------------~~~~~~~~~~~~~ 95 (164)
.+...+..++++++|..++. +|.-+. ....+|+++++++
T Consensus 26 ~~~~ie~L~~l~~~G~~Iii-aTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip 79 (126)
T TIGR01689 26 ILAVIEKLRHYKALGFEIVI-SSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP 79 (126)
T ss_pred CHHHHHHHHHHHHCCCEEEE-ECCCCchhhhccccccchhhHHHHHHHHHHcCCC
Confidence 35555666777778988777 654321 2668999999998
No 292
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=43.57 E-value=93 Score=24.21 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=35.2
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLL 101 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (164)
.|.+.++.+.++++|+. ++|+|......+...++.+|+...|..+
T Consensus 144 ~pg~~e~L~~L~~~gi~-laIvSn~~~~~~~~~L~~~gl~~~F~~v 188 (273)
T PRK13225 144 FPGVADLLAQLRSRSLC-LGILSSNSRQNIEAFLQRQGLRSLFSVV 188 (273)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCChhheEEE
Confidence 57888888999989987 4548888888888889999886445444
No 293
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.31 E-value=93 Score=25.34 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=39.1
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC-----HHHHHHHHHHhCCC
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND-----AFVMKAWKENLGIN 95 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~-----~~~~~~~~~~~~~~ 95 (164)
+++.|+.|. |..-- -- .-.+.+++..|++.|..|+. ...|+ .++++.|.++.|.+
T Consensus 137 ~~p~Vil~v-GVNG~---GK-TTTIaKLA~~l~~~g~~Vll-aA~DTFRAaAiEQL~~w~er~gv~ 196 (340)
T COG0552 137 KKPFVILFV-GVNGV---GK-TTTIAKLAKYLKQQGKSVLL-AAGDTFRAAAIEQLEVWGERLGVP 196 (340)
T ss_pred CCcEEEEEE-ecCCC---ch-HhHHHHHHHHHHHCCCeEEE-EecchHHHHHHHHHHHHHHHhCCe
Confidence 567887776 43221 22 34567788888889999888 88886 56678899988766
No 294
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=43.03 E-value=23 Score=21.34 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=14.4
Q ss_pred EEEEecCCcEEEEEeec
Q 045485 132 YALLAENGVVKVLNLEE 148 (164)
Q Consensus 132 ~~lid~~G~I~~~~~~~ 148 (164)
.|.||++|+|....+..
T Consensus 21 ~~~I~~~G~v~~~~v~~ 37 (79)
T PF03544_consen 21 EFTIDPDGRVSDVRVIQ 37 (79)
T ss_dssp EEEEETTTEEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEEE
Confidence 78999999998877653
No 295
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=43.02 E-value=89 Score=22.80 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=33.4
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLL 101 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (164)
.|.+.++.+.+++.|+.+.. +|..........++.+++...|..+
T Consensus 95 ~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~~~l~~~f~~~ 139 (226)
T PRK13222 95 YPGVKETLAALKAAGYPLAV-VTNKPTPFVAPLLEALGIADYFSVV 139 (226)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCCHHHHHHHHHHcCCccCccEE
Confidence 67778888888888887655 8877777778888888875334443
No 296
>PRK10026 arsenate reductase; Provisional
Probab=42.60 E-value=22 Score=25.06 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=37.6
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-EecC--CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-ISVN--DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is~d--~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
.+|.-..|..|+.. +..| ++.|+.+-.+ +-.+ +.++++.|+++.|.+ ..-+....+..+++++..
T Consensus 5 ~iY~~p~Cst~RKA-~~wL-------~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~--~~~lint~~~~yr~L~~~ 72 (141)
T PRK10026 5 TIYHNPACGTSRNT-LEMI-------RNSGTEPTIIHYLETPPTRDELVKLIADMGIS--VRALLRKNVEPYEELGLA 72 (141)
T ss_pred EEEeCCCCHHHHHH-HHHH-------HHCCCCcEEEeeeCCCcCHHHHHHHHHhCCCC--HHHHHHcCCchHHHcCCC
Confidence 34435568888874 4333 3345554441 2223 678999999998874 222233456666766654
No 297
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=42.54 E-value=87 Score=20.03 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=37.4
Q ss_pred CCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEe
Q 045485 46 AFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSD 103 (164)
Q Consensus 46 ~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D 103 (164)
+.++.+-...+..|...+++++++|..+.. .+.. ...++.++..|+...+++..+
T Consensus 47 s~v~~iDssgi~~L~~~~~~~~~~g~~l~l-~~~~--~~v~~~l~~~gl~~~~~i~~~ 101 (106)
T TIGR02886 47 KNVTFMDSSGLGVILGRYKKIKNEGGEVIV-CNVS--PAVKRLFELSGLFKIIRIYES 101 (106)
T ss_pred CCCcEecchHHHHHHHHHHHHHHcCCEEEE-EeCC--HHHHHHHHHhCCceEEEEcCC
Confidence 458888776688888889999989988666 4433 345566677777533555443
No 298
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=42.19 E-value=50 Score=23.37 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=21.5
Q ss_pred HhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 61 EKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 61 ~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
++.+.+++.|+.++. +|.+...-++.+++..+++
T Consensus 96 e~i~~~~~~~~~v~I-vS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 96 ELIRELKDNGIKVVI-VSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp HHHHHHHHTTSEEEE-EEEEEHHHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCEEEE-ECCCcHHHHHHHHHHcCCC
Confidence 555555666776555 6666666666666666665
No 299
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=42.15 E-value=79 Score=23.96 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=32.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCce
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEV 98 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~ 98 (164)
.|.+.++.+.++++|+.+.. +|......+...++.+++...|
T Consensus 110 ~pgv~e~L~~L~~~g~~l~I-~Tn~~~~~~~~~l~~~gl~~~F 151 (248)
T PLN02770 110 LNGLYKLKKWIEDRGLKRAA-VTNAPRENAELMISLLGLSDFF 151 (248)
T ss_pred CccHHHHHHHHHHcCCeEEE-EeCCCHHHHHHHHHHcCChhhC
Confidence 56677888888888887444 7888888888889988876434
No 300
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=41.88 E-value=67 Score=24.03 Aligned_cols=39 Identities=38% Similarity=0.532 Sum_probs=27.8
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|...++.+.++++|..++. ||....+-.+...+++|++
T Consensus 79 ~~ga~elv~~lk~~G~~v~i-iSgg~~~lv~~ia~~lg~d 117 (212)
T COG0560 79 TPGAEELVAALKAAGAKVVI-ISGGFTFLVEPIAERLGID 117 (212)
T ss_pred CccHHHHHHHHHHCCCEEEE-EcCChHHHHHHHHHHhCCc
Confidence 56666777777778877666 7777666667777777765
No 301
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=41.58 E-value=83 Score=21.58 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=34.7
Q ss_pred CcCchhhHHHhHHHHHhCCCcEEEEEec-----CCHHHHHHHHHHhCCCCceEEEEeC
Q 045485 52 SQKHLPGFVEKSAELKSKGVDIVACISV-----NDAFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 52 ~~~~l~~l~~~~~~~~~~~v~vi~~is~-----d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
... -|.|+++.+..+...+.+|.|-.. +..+-+...++.+|+. +.++.++
T Consensus 45 ~~~-Rp~l~~ll~~i~~g~~d~lvV~~ldRl~R~~~d~~~~~l~~~gv~--l~~~~~~ 99 (134)
T cd03769 45 NEK-RKGLLKLLEDVLAGKVERVVITYKDRLARFGFELLEELFKAYGVE--IVVINQE 99 (134)
T ss_pred ccC-CHHHHHHHHHHHcCCCCEEEEEeccHHHHhhHHHHHHHHHHCCCE--EEEEeCC
Confidence 344 699999999888766666664333 3445455567788888 8888765
No 302
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=41.53 E-value=91 Score=19.76 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=33.2
Q ss_pred cEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEE
Q 045485 72 DIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLN 145 (164)
Q Consensus 72 ~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~ 145 (164)
..+. +..++.++..+.+++.|.+ +. .++.. ..||. +..++.|++|..+.+.
T Consensus 59 ~~i~-~~v~d~~~~~~~l~~~G~~--~~--~~~~~---~~~g~---------------~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 59 PDLS-IEVDDVDAALARAVAAGFA--IV--YGPTD---EPWGV---------------RRFFVRDPFGKLVNIL 109 (112)
T ss_pred CEEE-EEeCCHHHHHHHHHhcCCe--Ee--cCCcc---CCCce---------------EEEEEECCCCCEEEEE
Confidence 4566 7778888888888888766 32 33321 11222 4478999999887654
No 303
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=41.30 E-value=32 Score=21.39 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=13.1
Q ss_pred EEEEEecCCcEEEEEee
Q 045485 131 RYALLAENGVVKVLNLE 147 (164)
Q Consensus 131 ~~~lid~~G~I~~~~~~ 147 (164)
..+++|++|+|++....
T Consensus 7 ~i~v~D~~~~i~~~N~~ 23 (110)
T PF08448_consen 7 GIFVIDPDGRIVYANQA 23 (110)
T ss_dssp EEEEEETTSBEEEE-HH
T ss_pred eeEEECCCCEEEEEHHH
Confidence 37899999999987643
No 304
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=41.21 E-value=71 Score=22.28 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=14.2
Q ss_pred HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCC
Q 045485 59 FVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGI 94 (164)
Q Consensus 59 l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~ 94 (164)
+.++.+.+++.|..++. +|.....-++.+++.+|+
T Consensus 78 ~~~~l~~l~~~g~~~~i-vS~~~~~~i~~~~~~~g~ 112 (177)
T TIGR01488 78 ARELISWLKERGIDTVI-VSGGFDFFVEPVAEKLGI 112 (177)
T ss_pred HHHHHHHHHHCCCEEEE-ECCCcHHHHHHHHHHcCC
Confidence 33444444444444332 444433334444444443
No 305
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=41.10 E-value=95 Score=24.85 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=33.5
Q ss_pred HHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc
Q 045485 60 VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGN 105 (164)
Q Consensus 60 ~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (164)
.+..++++++|+.+|. .|.-+..++..++++.++. .+++....
T Consensus 24 ~~aL~~Lk~~GI~vVl-aTGRt~~ev~~l~~~Lgl~--~p~I~eNG 66 (302)
T PRK12702 24 RQALAALERRSIPLVL-YSLRTRAQLEHLCRQLRLE--HPFICEDG 66 (302)
T ss_pred HHHHHHHHHCCCEEEE-EcCCCHHHHHHHHHHhCCC--CeEEEeCC
Confidence 3445677889999888 7888888999999999988 56666543
No 306
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=40.65 E-value=86 Score=19.17 Aligned_cols=48 Identities=13% Similarity=0.018 Sum_probs=32.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGN 105 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (164)
.....++...++..|+.+..-....+....-++.++.|.+ +.++.+.+
T Consensus 14 ~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~--~~iiig~~ 61 (91)
T cd00860 14 LDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP--YILVVGDK 61 (91)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC--EEEEECcc
Confidence 4455666777877787765423445666667777788888 77777654
No 307
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=39.92 E-value=12 Score=22.23 Aligned_cols=9 Identities=22% Similarity=0.408 Sum_probs=6.6
Q ss_pred CCCCcCCCc
Q 045485 45 GAFTPTCSQ 53 (164)
Q Consensus 45 ~~~cp~C~~ 53 (164)
..+||.|.+
T Consensus 6 ~~~~~~~~~ 14 (74)
T cd03045 6 LPGSPPCRA 14 (74)
T ss_pred CCCCCcHHH
Confidence 557888875
No 308
>PRK10811 rne ribonuclease E; Reviewed
Probab=39.83 E-value=74 Score=29.76 Aligned_cols=101 Identities=8% Similarity=0.059 Sum_probs=52.0
Q ss_pred CcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCC---ceEEEEeCcchHHHHhCCccccCCCC-C
Q 045485 48 TPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIND---EVLLLSDGNGVFTKAIGCELDLSDKP-M 123 (164)
Q Consensus 48 cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~---~~~~l~D~~~~~~~~~gv~~~~~~~~-~ 123 (164)
||.|.....+-+.+.+..+...++.-|.+-+.+.-+.++.|++.++.+. ...++.+ ...+.+.|||......-. .
T Consensus 203 aP~LLy~e~~~~~ralRD~l~~dv~eIvVDd~e~~e~ik~yl~~~~~pd~~~kI~lY~~-~~pLFe~YgIE~qIE~aL~r 281 (1068)
T PRK10811 203 APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG-EIPLFSHYQIESQIESAFQR 281 (1068)
T ss_pred CceEeecCCchHHHHHHHhcccCccEEEECCHHHHHHHHHHHHHhcccccccceeeecC-CCChHHhcCHHHHHHHHhCC
Confidence 5555544344445555555444444343112223455677777765321 2444444 366888888764311100 0
Q ss_pred CCCcceeEEEEEecCCcEEEEEeecC
Q 045485 124 GLGVRSRRYALLAENGVVKVLNLEEG 149 (164)
Q Consensus 124 ~~~~~~p~~~lid~~G~I~~~~~~~~ 149 (164)
.+-++.-++++|++---+..+.++.+
T Consensus 282 rV~L~sGG~LvIE~TEALtvIDVNSG 307 (1068)
T PRK10811 282 EVRLPSGGSIVIDSTEALTAIDINSA 307 (1068)
T ss_pred cEECCCCCEEEEeccceEEEEEccCC
Confidence 01233345788888777777777654
No 309
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=39.81 E-value=34 Score=26.96 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=16.9
Q ss_pred cCCCCcCCCcCchhhHHHhHHHHHhC
Q 045485 44 PGAFTPTCSQKHLPGFVEKSAELKSK 69 (164)
Q Consensus 44 ~~~~cp~C~~~~l~~l~~~~~~~~~~ 69 (164)
+..|||.|-. -.-+..+...+.+.
T Consensus 6 ~~~~CpGCg~--~~il~al~~al~~l 29 (279)
T PRK11866 6 PPIWCPGCGN--YGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCCC--hHHHHHHHHHHHHh
Confidence 3579999994 66677776666543
No 310
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=39.80 E-value=70 Score=23.34 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=31.2
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCce
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEV 98 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~ 98 (164)
.|.+.++.+.+++.|+.+.. +|..+...+...+++.++...|
T Consensus 96 ~~g~~~~L~~L~~~g~~~~i-~Tn~~~~~~~~~l~~~~l~~~f 137 (221)
T TIGR02253 96 YPGVRDTLMELRESGYRLGI-ITDGLPVKQWEKLERLGVRDFF 137 (221)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EeCCchHHHHHHHHhCChHHhc
Confidence 46677888888888887444 7877777777888888875334
No 311
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.76 E-value=73 Score=23.80 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=25.9
Q ss_pred CCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC-----------HHHHHHHHHHhCCC
Q 045485 46 AFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND-----------AFVMKAWKENLGIN 95 (164)
Q Consensus 46 ~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~-----------~~~~~~~~~~~~~~ 95 (164)
++|.+|... ..+.+.+.|..+.+ -..|+ .++..+|+++++++
T Consensus 10 ~CCAPcs~y-------~le~l~~~~~~i~~-yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~ 62 (204)
T COG1636 10 SCCAPCSGY-------VLEKLRDSGIKITI-YFYNPNIHPLSEYELRKEEVKRFAEKFGIN 62 (204)
T ss_pred eecCCCcHH-------HHHHHHhcCcceEE-EEeCCCCCchHHHHHHHHHHHHHHHHcCCe
Confidence 379999864 23444445666544 33332 45567788888876
No 312
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=39.34 E-value=75 Score=23.23 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=30.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|.+.++.+.++++|..+.. +|......+..+++..++.
T Consensus 87 ~~g~~~~l~~l~~~g~~~~I-vS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 87 TEGAEELVKTLKEKGYKVAV-ISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred CCCHHHHHHHHHHCCCEEEE-ECCCcHHHHHHHHHHcCCC
Confidence 46667778888888887655 8888777778888888876
No 313
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=39.12 E-value=92 Score=19.11 Aligned_cols=47 Identities=6% Similarity=-0.116 Sum_probs=31.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
.....++..++++.|+.+..-....+.....++.++.|.+ |.++.+.
T Consensus 17 ~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~--~~iiig~ 63 (94)
T cd00738 17 REYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVP--FAVVVGE 63 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCC--EEEEECC
Confidence 4555667788888887655412234566666677778888 8777765
No 314
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=39.11 E-value=1e+02 Score=23.01 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=38.2
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc------------chHHHHhCCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGN------------GVFTKAIGCE 115 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~------------~~~~~~~gv~ 115 (164)
.|...++.+.++++|+. ++++|..+.......++.+++...|.++...+ ..+.+.+|+.
T Consensus 97 ~pg~~~~L~~L~~~g~~-l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~ 167 (229)
T PRK13226 97 FDGVEGMLQRLECAGCV-WGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVA 167 (229)
T ss_pred CCCHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCC
Confidence 46667777888888875 45477777777777888888753354433211 2456777764
No 315
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=38.70 E-value=84 Score=22.97 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=30.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.+.+.++.+.+++.|+.+.. +|....+.+...++.+++.
T Consensus 89 ~~G~~~~L~~L~~~g~~~~i-vT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 89 LPGAEEAFRSLRSSGIKVAL-TTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EeCCchHHHHHHHHHhhhh
Confidence 46677888888888987544 8888878888888888764
No 316
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=38.61 E-value=19 Score=24.00 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=38.5
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-EecC--CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-ISVN--DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is~d--~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
+|....|..|++. + +-+++.|+.+..+ +..+ +.+++..|++..|.+ +.-+....+..+++++..
T Consensus 3 iy~~~~C~t~rkA-~-------~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~~~--~~~lin~~~~~y~~l~~~ 69 (112)
T cd03034 3 IYHNPRCSKSRNA-L-------ALLEEAGIEPEIVEYLKTPPTAAELRELLAKLGIS--PRDLLRTKEAPYKELGLA 69 (112)
T ss_pred EEECCCCHHHHHH-H-------HHHHHCCCCeEEEecccCCcCHHHHHHHHHHcCCC--HHHHHhcCCchHHHcCCC
Confidence 3435668888864 3 2344456555541 2222 678899999999865 433344556666666654
No 317
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=38.35 E-value=1.1e+02 Score=22.06 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=32.8
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceE
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVL 99 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~ 99 (164)
.|...++.+.++++|+.+.. +|......+...++..++...|.
T Consensus 77 ~~g~~~~L~~L~~~g~~~~i-~Sn~~~~~~~~~l~~~~l~~~f~ 119 (205)
T TIGR01454 77 FPGVPELLAELRADGVGTAI-ATGKSGPRARSLLEALGLLPLFD 119 (205)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCchHHHHHHHHHcCChhhee
Confidence 58888899999989987655 78777777778888888753344
No 318
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=38.25 E-value=99 Score=19.23 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=32.4
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGN 105 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (164)
...-.++.+.+++.|+.+..-....+....-++.+..|.+ |.++.+.+
T Consensus 15 ~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p--~~iiiG~~ 62 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP--FIIIIGEK 62 (94)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES--EEEEEEHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe--EEEEECch
Confidence 3444667788888887655523445666677777778888 88877653
No 319
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=38.21 E-value=1.3e+02 Score=24.11 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=30.3
Q ss_pred CcEEEEEecC--------CHHHHHHHHHHhCCCCceEEEEeCcc---hHHHHhCC
Q 045485 71 VDIVACISVN--------DAFVMKAWKENLGINDEVLLLSDGNG---VFTKAIGC 114 (164)
Q Consensus 71 v~vi~~is~d--------~~~~~~~~~~~~~~~~~~~~l~D~~~---~~~~~~gv 114 (164)
+.||. |+.| ...-+.++++.+|+. .-+++.|+- +-.+++|-
T Consensus 17 lDvil-VtGDAYVDHPsFG~AiIgR~Le~~Gyr--VgIiaQPdw~~~~df~~lG~ 68 (302)
T PF08497_consen 17 LDVIL-VTGDAYVDHPSFGAAIIGRVLEAHGYR--VGIIAQPDWRSPEDFKRLGR 68 (302)
T ss_pred ccEEE-EeCcccccCcchhHHHHHHHHHHcCCe--EEEEeCCCCCChHHHHHhCC
Confidence 56787 8887 256678999999999 999998873 33344443
No 320
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=37.99 E-value=39 Score=20.64 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.4
Q ss_pred EEEEEecCCcEEEEEee
Q 045485 131 RYALLAENGVVKVLNLE 147 (164)
Q Consensus 131 ~~~lid~~G~I~~~~~~ 147 (164)
+.+++|++|+|++....
T Consensus 3 ~i~i~d~~g~i~~~N~~ 19 (104)
T PF13426_consen 3 GIFILDPDGRILYVNPA 19 (104)
T ss_dssp EEEEEETTSBEEEE-HH
T ss_pred EEEEECCcCcEEehhHH
Confidence 37999999999998743
No 321
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.94 E-value=94 Score=19.95 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=28.8
Q ss_pred EecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEE
Q 045485 77 ISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLN 145 (164)
Q Consensus 77 is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~ 145 (164)
+..++.++..+.+++.|.+ + ..++.... .+.. + + .+..++.|++|.++.+.
T Consensus 73 ~~~~dv~~~~~~l~~~g~~--~--~~~p~~~~---~~~~--------~-~--~~~~~~~DPdG~~iE~~ 123 (125)
T cd08357 73 LSEEEFDALAERLEAAGVE--F--LIEPYTRF---EGQP--------G-E--QETFFLKDPSGNALEFK 123 (125)
T ss_pred EeHHHHHHHHHHHHHCCCc--E--ecCcceec---cCCc--------C-c--eeEEEEECCCCCEEEEe
Confidence 4456677777777777766 3 22322111 1111 0 0 15589999999887553
No 322
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=37.71 E-value=88 Score=23.02 Aligned_cols=40 Identities=28% Similarity=0.343 Sum_probs=31.8
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIND 96 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~ 96 (164)
.|.+.++...++++|+.+.. +|......+..++++.++..
T Consensus 94 ~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~~~l~~ 133 (222)
T PRK10826 94 LPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTMFDLRD 133 (222)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHhCcchh
Confidence 56778888888888988666 88888888888888888753
No 323
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=37.40 E-value=1.2e+02 Score=21.59 Aligned_cols=39 Identities=23% Similarity=0.080 Sum_probs=26.8
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|.+.++.+.++++|+.++. +|......+...++.+|+.
T Consensus 82 ~~g~~e~l~~l~~~g~~~~I-vS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 82 RDYAEELVRWLKEKGLKTAI-VSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred CccHHHHHHHHHHCCCEEEE-EeCCcHHHHHHHHHHhCCC
Confidence 35566677777777877555 7776666667777777765
No 324
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=37.31 E-value=88 Score=24.11 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=31.7
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCce
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEV 98 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~ 98 (164)
.|.+.++.++++++|+.+.. +|..+...+...++.+++...|
T Consensus 111 ~pg~~e~L~~L~~~g~~l~I-~Tn~~~~~~~~~l~~~gl~~~F 152 (260)
T PLN03243 111 RPGSREFVQALKKHEIPIAV-ASTRPRRYLERAIEAVGMEGFF 152 (260)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EeCcCHHHHHHHHHHcCCHhhC
Confidence 56777788888888887554 7888878888888888875333
No 325
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=36.72 E-value=52 Score=21.50 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=37.4
Q ss_pred CcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 36 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 36 ~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+.+||.+ +..+-....- +..|.++.+.++.+|+.++. ... ...+++.++..|+.
T Consensus 49 ~~vIlD~--s~v~~iDssg-i~~L~~~~~~~~~~g~~~~l-~~~--~~~v~~~l~~~~~~ 102 (117)
T PF01740_consen 49 KNVILDM--SGVSFIDSSG-IQALVDIIKELRRRGVQLVL-VGL--NPDVRRILERSGLI 102 (117)
T ss_dssp SEEEEEE--TTESEESHHH-HHHHHHHHHHHHHTTCEEEE-ESH--HHHHHHHHHHTTGH
T ss_pred eEEEEEE--EeCCcCCHHH-HHHHHHHHHHHHHCCCEEEE-EEC--CHHHHHHHHHcCCC
Confidence 4455555 5566666664 89999999999999998777 333 44555666666654
No 326
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=36.60 E-value=1.1e+02 Score=21.96 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=25.6
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.+...++.+.++++|..++. +|.....-++.+++..++.
T Consensus 89 ~~~~~~~l~~l~~~g~~v~i-vS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVL-VSASLTILVKPLARILGID 127 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEE-EeCCcHHHHHHHHHHcCCc
Confidence 35556666666777777555 6666666667777777765
No 327
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=36.13 E-value=1.1e+02 Score=19.44 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=29.0
Q ss_pred HHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchH
Q 045485 66 LKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVF 108 (164)
Q Consensus 66 ~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 108 (164)
+...++.++. +...+......++...+++ +.++.|.|..-
T Consensus 29 ~~~~~i~ii~-~gG~~~~~~~~ll~~~~i~--~~vi~D~D~~~ 68 (97)
T cd01026 29 LDEAGISIIP-VGGKNFKPFIKLLNALGIP--VAVLTDLDAKR 68 (97)
T ss_pred HHHCCEEEEE-eCCcchHHHHHHHHHcCCC--EEEEEeCCCCC
Confidence 4567888888 4444666667778888988 99999987533
No 328
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=35.78 E-value=8.4 Score=26.18 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=42.8
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-EecC--CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-ISVN--DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is~d--~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
|.+|...-|..|+.. . +-+++.|+..-.+ +..+ +.+++.+|++..|.+ +.-+....+..++++|..
T Consensus 3 itiy~~p~C~t~rka-~-------~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~--~~~li~t~~~~~r~L~~~ 71 (117)
T COG1393 3 ITIYGNPNCSTCRKA-L-------AWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDG--VEELINTRGTTYRELNLD 71 (117)
T ss_pred EEEEeCCCChHHHHH-H-------HHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCcc--HHHHHHhccchHHHcCCc
Confidence 455545556666653 2 3344566664331 3333 678999999999987 666667778888888843
No 329
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=35.74 E-value=40 Score=26.61 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=16.6
Q ss_pred CCCcCCCcCchhhHHHhHHHHHhC
Q 045485 46 AFTPTCSQKHLPGFVEKSAELKSK 69 (164)
Q Consensus 46 ~~cp~C~~~~l~~l~~~~~~~~~~ 69 (164)
.|||.|-. ..-++.+.+.+.+.
T Consensus 18 ~~CpGCg~--~~il~~l~~al~~l 39 (286)
T PRK11867 18 RWCPGCGD--GSILAALQRALAEL 39 (286)
T ss_pred CcCCCCCC--HHHHHHHHHHHHHh
Confidence 48999995 46888888887543
No 330
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=35.47 E-value=1.2e+02 Score=19.35 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=31.8
Q ss_pred EEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEE
Q 045485 73 IVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVL 144 (164)
Q Consensus 73 vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~ 144 (164)
.+. +..++.++..+.+.+.|.+ +. ..+.. ..+|. +..++.|++|.+..+
T Consensus 69 ~~~-~~v~did~~~~~l~~~G~~--~~--~~~~~---~~~g~---------------~~~~~~DP~G~~ie~ 117 (119)
T cd08359 69 ILN-FEVDDVDAEYERLKAEGLP--IV--LPLRD---EPWGQ---------------RHFIVRDPNGVLIDI 117 (119)
T ss_pred EEE-EEECCHHHHHHHHHhcCCC--ee--ecccc---CCCcc---------------eEEEEECCCCCEEEE
Confidence 355 7788899888888888876 32 22210 01221 457899999988654
No 331
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.34 E-value=1.4e+02 Score=19.93 Aligned_cols=47 Identities=19% Similarity=0.068 Sum_probs=32.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGN 105 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (164)
.....+++..+++.|+.+..-.. .+....-++.++.|.+ |.++.+.+
T Consensus 41 ~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~--~~iiiG~~ 87 (121)
T cd00858 41 VEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTP--FCVTVDFD 87 (121)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCC--EEEEECcC
Confidence 34455667778888877655345 6666667777788888 87777654
No 332
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=35.27 E-value=36 Score=24.30 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=23.9
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEE
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVA 75 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~ 75 (164)
.||...-||.|-.. .+.+.++.+.+ .++.+.-
T Consensus 3 ~~~~D~~Cp~cy~~-~~~l~~l~~~~--~~~~i~~ 34 (193)
T PF01323_consen 3 EFFFDFICPWCYLA-SPRLRKLRAEY--PDVEIEW 34 (193)
T ss_dssp EEEEBTTBHHHHHH-HHHHHHHHHHH--TTCEEEE
T ss_pred EEEEeCCCHHHHHH-HHHHHHHHHHh--cCCcEEE
Confidence 34448889999997 89999998888 4455433
No 333
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=35.07 E-value=1.5e+02 Score=22.26 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=28.8
Q ss_pred HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 59 FVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 59 l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
-.+..++++++|+.++. .|.-++.....++++.++.
T Consensus 20 ~~~ai~~l~~~G~~~vi-~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 20 AREALEELKDLGFPIVF-VSSKTRAEQEYYREELGVE 55 (225)
T ss_pred HHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHcCCC
Confidence 34555677788999888 7888888889999999976
No 334
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=35.00 E-value=1.5e+02 Score=21.63 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=25.6
Q ss_pred HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 59 FVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 59 l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..+...+++++|+.++. .+.-+......++++++.+
T Consensus 20 ~~~al~~l~~~Gi~~~~-aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 20 ALEAIRKAESVGIPVVL-VTGNSVQFARALAKLIGTP 55 (225)
T ss_pred HHHHHHHHHHCCCEEEE-EcCCchHHHHHHHHHhCCC
Confidence 34445667778888776 6777777777788888765
No 335
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=34.72 E-value=1.5e+02 Score=20.67 Aligned_cols=38 Identities=34% Similarity=0.568 Sum_probs=19.3
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+.+.++.+.++++|+.+.. +|......+...++.+++.
T Consensus 75 ~g~~~ll~~l~~~g~~~~i-~S~~~~~~~~~~l~~~~l~ 112 (188)
T TIGR01489 75 PGFKEFIAFIKEHGIDFIV-ISDGNDFFIDPVLEGIGEK 112 (188)
T ss_pred ccHHHHHHHHHHcCCcEEE-EeCCcHHHHHHHHHHcCCh
Confidence 3444555555555555443 5555555555555555543
No 336
>PLN02954 phosphoserine phosphatase
Probab=34.70 E-value=1e+02 Score=22.64 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=31.1
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|.+.++.+.++++|+.+.. +|......+...++.+|++
T Consensus 86 ~pg~~e~l~~l~~~g~~~~I-vS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 86 SPGIPELVKKLRARGTDVYL-VSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred CccHHHHHHHHHHCCCEEEE-ECCCcHHHHHHHHHHhCCC
Confidence 57778888888888887554 8888877888888888875
No 337
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=34.68 E-value=30 Score=15.23 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=12.0
Q ss_pred CcCCCcCchhhHHHhHHHH
Q 045485 48 TPTCSQKHLPGFVEKSAEL 66 (164)
Q Consensus 48 cp~C~~~~l~~l~~~~~~~ 66 (164)
|+.|... .+....+..-+
T Consensus 3 C~~C~~~-~~~~~~l~~H~ 20 (24)
T PF13894_consen 3 CPICGKS-FRSKSELRQHM 20 (24)
T ss_dssp -SSTS-E-ESSHHHHHHHH
T ss_pred CcCCCCc-CCcHHHHHHHH
Confidence 8999987 88877776544
No 338
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=34.67 E-value=1.5e+02 Score=22.27 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=30.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCC--HHHHHHHHHHhCCCC-ceEEEEe
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVND--AFVMKAWKENLGIND-EVLLLSD 103 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~--~~~~~~~~~~~~~~~-~~~~l~D 103 (164)
.|...+..++++++|..+.. +|..+ .....+.+++.|++. .|..+.-
T Consensus 26 ~pga~e~L~~L~~~G~~~~i-vTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~ 75 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKPVYF-VSNSPRNIFSLHKTLKSLGINADLPEMIIS 75 (242)
T ss_pred CccHHHHHHHHHHCCCEEEE-EeCCCCChHHHHHHHHHCCCCccccceEEc
Confidence 67788888888888887655 65543 233336677788763 3444433
No 339
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=34.40 E-value=1.2e+02 Score=21.99 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=23.8
Q ss_pred hHHHhHHHHHhCCCcEEEEEec-CCHHHHHHHHHHhCCC
Q 045485 58 GFVEKSAELKSKGVDIVACISV-NDAFVMKAWKENLGIN 95 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~-d~~~~~~~~~~~~~~~ 95 (164)
.......+++++|+.+.. .|. +.|+.+++.++.+++.
T Consensus 49 dv~~iL~~L~~~gv~lav-ASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 49 DVPEILQELKERGVKLAV-ASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp THHHHHHHHHHCT--EEE-EE--S-HHHHHHHHHHTT-C
T ss_pred CHHHHHHHHHHCCCEEEE-EECCCChHHHHHHHHhcCCC
Confidence 334556677779998555 774 6788999999998876
No 340
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=34.38 E-value=1.3e+02 Score=22.01 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC-----------HHHHHHHHHHhCCC
Q 045485 46 AFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND-----------AFVMKAWKENLGIN 95 (164)
Q Consensus 46 ~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~-----------~~~~~~~~~~~~~~ 95 (164)
.+|.+|... ..+.+++.|..+.+ ...|+ .++++++.+..+++
T Consensus 5 ~CCaPCs~~-------~~~~L~~~g~~vt~-~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~ 57 (176)
T PF02677_consen 5 ICCAPCSTY-------PLERLREEGFDVTG-YFYNPNIHPYEEYERRLEELKRFAEKLGIP 57 (176)
T ss_pred ecCccccHH-------HHHHHHHCCCCeEE-EEeCCCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 468888753 23445556766666 43332 34455666666555
No 341
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=34.08 E-value=1.2e+02 Score=22.93 Aligned_cols=46 Identities=26% Similarity=0.256 Sum_probs=35.7
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
.+...+..++++++|+.++. .+.-+...+..++++.+++ .++++..
T Consensus 22 ~~~~~~al~~~~~~g~~v~i-aTGR~~~~~~~~~~~l~~~--~~~I~~N 67 (264)
T COG0561 22 SPETKEALARLREKGVKVVL-ATGRPLPDVLSILEELGLD--GPLITFN 67 (264)
T ss_pred CHHHHHHHHHHHHCCCEEEE-ECCCChHHHHHHHHHcCCC--ccEEEeC
Confidence 35566666788899999887 7888888999999999988 5555543
No 342
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=33.19 E-value=74 Score=23.45 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=27.5
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCC-----HHHHHHHHHHhCCCCceEEEE
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVND-----AFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~-----~~~~~~~~~~~~~~~~~~~l~ 102 (164)
.-.+.+++..++.++-.|.. ++.|+ .++++.|.+..+++ +-...
T Consensus 15 TTt~aKLAa~~~~~~~~v~l-is~D~~R~ga~eQL~~~a~~l~vp--~~~~~ 63 (196)
T PF00448_consen 15 TTTIAKLAARLKLKGKKVAL-ISADTYRIGAVEQLKTYAEILGVP--FYVAR 63 (196)
T ss_dssp HHHHHHHHHHHHHTT--EEE-EEESTSSTHHHHHHHHHHHHHTEE--EEESS
T ss_pred HhHHHHHHHHHhhcccccee-ecCCCCCccHHHHHHHHHHHhccc--cchhh
Confidence 34566777777766666555 77774 56777888888766 54443
No 343
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=32.90 E-value=2.1e+02 Score=22.22 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=37.4
Q ss_pred hhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 31 DLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 31 d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+|+++.++||.+ +.....+. ...+..+.+.+++.|+..|| |...+++ +++.....|++
T Consensus 46 ~FF~~~PvVlDl--~~l~~~~~---~~dl~~L~~~Lr~~gl~~vG-V~g~~~~-~~~~a~~~gL~ 103 (248)
T PRK04596 46 KLFGRAAVILDF--GGLSQVPD---LATAKALLDGLRSAGVLPVA-LAYGTSE-IDLLSQQLGLP 103 (248)
T ss_pred HhhCCCcEEEEc--hhhcCccc---cccHHHHHHHHHHCCCEEEE-EeCCCHH-HHHHHHHCCCC
Confidence 344678888888 33332221 24577788889999999999 7766654 34555555554
No 344
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=32.67 E-value=1.6e+02 Score=24.31 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=32.2
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..|.++.++++++|+.++. ...++.+.+.+++++++.+
T Consensus 61 esL~~L~~~L~~~g~~L~v-~~G~~~~vl~~L~~~~~~~ 98 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLV-RSGKPEDVLPELIKELGVR 98 (429)
T ss_pred HHHHHHHHHHHHcCCCeEE-EeCCHHHHHHHHHHHhCCC
Confidence 5678888899999999877 7788888889999988876
No 345
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=32.48 E-value=1.5e+02 Score=21.63 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=28.7
Q ss_pred HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 59 FVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 59 l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..+..++++++|+.++. +|.-+...+..+++..++.
T Consensus 21 ~~~~l~~l~~~gi~~~i-~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVIL-CTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEE-EcCCCHHHHHHHHHHcCCC
Confidence 44566677889998777 8888888888899888864
No 346
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=32.48 E-value=2e+02 Score=21.08 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=43.9
Q ss_pred hHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcc----hHHHHhCCccccCCCCCCCCcceeEEE
Q 045485 58 GFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNG----VFTKAIGCELDLSDKPMGLGVRSRRYA 133 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~----~~~~~~gv~~~~~~~~~~~~~~~p~~~ 133 (164)
-|..+...+...|.+.+. . .-+ ..+++.+.+.|++ +..|.+.+. +-...||-+++ .- |.++
T Consensus 104 l~~~l~~~L~~~g~~w~v-f-TaT-~~lr~~~~rlgl~--~~~La~Ad~~rl~~~~~~WGsYY~--------~~--P~V~ 168 (179)
T PF12261_consen 104 LFAALAQLLAQQGFEWVV-F-TAT-RQLRNLFRRLGLP--PTVLADADPSRLGDDRASWGSYYD--------HQ--PQVM 168 (179)
T ss_pred HHHHHHHHHHHCCCCEEE-E-eCC-HHHHHHHHHcCCC--ceeccccCHhHcCcChhhhhhhhc--------CC--CeEE
Confidence 355566677788988665 3 333 4678888999999 888887663 34577887765 22 5577
Q ss_pred EEe
Q 045485 134 LLA 136 (164)
Q Consensus 134 lid 136 (164)
.+|
T Consensus 169 a~~ 171 (179)
T PF12261_consen 169 AGD 171 (179)
T ss_pred EEE
Confidence 766
No 347
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.99 E-value=28 Score=21.93 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=23.4
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHh
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENL 92 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~ 92 (164)
.|+ +..||.|..- ...+.++.-.| ..|- | ..+-..+++|++-.
T Consensus 6 lfg-sn~Cpdca~a-~eyl~rl~v~y-----d~Ve-I-t~Sm~NlKrFl~lR 48 (85)
T COG4545 6 LFG-SNLCPDCAPA-VEYLERLNVDY-----DFVE-I-TESMANLKRFLHLR 48 (85)
T ss_pred eec-cccCcchHHH-HHHHHHcCCCc-----eeee-h-hhhhhhHHHHHhhh
Confidence 344 8999999864 55555543332 2233 2 23444556665543
No 348
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=31.97 E-value=1.2e+02 Score=21.76 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=29.5
Q ss_pred HHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCc
Q 045485 60 VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGN 105 (164)
Q Consensus 60 ~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~ 105 (164)
+++.+.+++.|+.++. +|..+.+.+.++.+...-. ..++..+.
T Consensus 2 ~~~~~~y~~~gy~v~~-~S~~~~~g~~~l~~~l~~k--~~vl~G~S 44 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFF-ISAKTGEGIEELKELLKGK--TSVLLGQS 44 (161)
T ss_dssp HHHHHHHHHTTSEEEE--BTTTTTTHHHHHHHHTTS--EEEEECST
T ss_pred HHHHHHHHHcCCcEEE-EeCCCCcCHHHHHHHhcCC--EEEEECCC
Confidence 4566778889999999 8877655666665555445 77777764
No 349
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=31.84 E-value=1.8e+02 Score=20.23 Aligned_cols=71 Identities=10% Similarity=0.157 Sum_probs=37.2
Q ss_pred eehhhhcCCCcEEEEEecCCCCcCCCcCchhhH----HHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCC--ceEE
Q 045485 27 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGF----VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIND--EVLL 100 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l----~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~--~~~~ 100 (164)
-++.++.......+.|+++. ..-+. | ...+ .++.++|.+..+.++- +..|.. .+...++|+.. .+.+
T Consensus 25 ~~~~~~~~~~~~~vl~~~gd-p~r~~-E-~~D~avvleELa~e~~~~~v~~ak-VDiD~~---~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 25 SRLDDWLTQAPDGVVLLSSD-PKRTP-E-VSDNPVMIGELLREFPDYTWQVAI-ADLEQS---EAIGDRFGVFRFPATLV 97 (132)
T ss_pred ccHHHHHhCCCcEEEEeCCC-CCcCC-c-cccHHHHHHHHHHHhcCCceEEEE-EECCCC---HHHHHHcCCccCCEEEE
Confidence 46777765555667777542 32222 3 4444 4444455322355555 667654 34556666532 3666
Q ss_pred EEeC
Q 045485 101 LSDG 104 (164)
Q Consensus 101 l~D~ 104 (164)
+-|.
T Consensus 98 FkdG 101 (132)
T PRK11509 98 FTGG 101 (132)
T ss_pred EECC
Confidence 6554
No 350
>PRK05370 argininosuccinate synthase; Validated
Probab=31.48 E-value=1e+02 Score=26.05 Aligned_cols=71 Identities=14% Similarity=0.023 Sum_probs=42.4
Q ss_pred ehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC-------HHHHHHHHHHhCCCCceEE
Q 045485 28 TVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND-------AFVMKAWKENLGINDEVLL 100 (164)
Q Consensus 28 ~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~-------~~~~~~~~~~~~~~~~~~~ 100 (164)
-|+++-+|++|||-|--+-...+|..+ +++.|+.|++ +..|. .+.+++-....|.. =.+
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~w-----------L~e~~~eVia-~~aDvGQ~~~ed~~~i~~kA~~~GA~--~~~ 69 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALLW-----------MRQKGAVPYA-YTANLGQPDEDDYDAIPRRAMEYGAE--NAR 69 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHHH-----------HHhcCCeEEE-EEEECCCCCccchHHHHHHHHHhCCC--EEE
Confidence 456664566677666545555555542 2233677777 65542 23455555566765 566
Q ss_pred EEeCcchHHHHh
Q 045485 101 LSDGNGVFTKAI 112 (164)
Q Consensus 101 l~D~~~~~~~~~ 112 (164)
+.|...++++.|
T Consensus 70 viDlr~eF~e~~ 81 (447)
T PRK05370 70 LIDCRAQLVAEG 81 (447)
T ss_pred EeccHHHHHHHH
Confidence 778877777766
No 351
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=31.37 E-value=1.4e+02 Score=26.79 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCCcCchhhHHHhHHHHHhCCCcEEEEEecCC----------HHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccC
Q 045485 50 TCSQKHLPGFVEKSAELKSKGVDIVACISVND----------AFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLS 119 (164)
Q Consensus 50 ~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~----------~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~ 119 (164)
+|..|.+.-+........ ..+.+|. ||..+ .+.+++|.+-..-+ ..++...|..++++|.-.
T Consensus 62 p~k~e~~~~~~gvl~~ip-~~c~ii~-vsns~r~~~d~~~~e~~~~~~~~~~~~~~--~~~vhq~dp~~a~a~~~~---- 133 (694)
T PRK14502 62 PIKDEDLKVFEGVLSGIP-HDCLMIV-ISNSSKQEVDNFKNEKDIVNRFCRITHRQ--AIVVHQKNPELANAIADA---- 133 (694)
T ss_pred EcCCCchhHHhhHhhcCC-CCCeEEE-EeCCCCCchHHHHHHHHHHHHHHHhhcCc--eEEEEcCCHHHHHHHHHc----
Q ss_pred CCCCCCCcceeEEEEEecCCcEE
Q 045485 120 DKPMGLGVRSRRYALLAENGVVK 142 (164)
Q Consensus 120 ~~~~~~~~~~p~~~lid~~G~I~ 142 (164)
|+|. ++|.+|.|+
T Consensus 134 ------g~~~----~~~~~~~vr 146 (694)
T PRK14502 134 ------GYPE----LLGEDGLIR 146 (694)
T ss_pred ------CChh----hhCCCCcee
No 352
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=31.32 E-value=1.1e+02 Score=27.47 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=32.3
Q ss_pred hHHHhHHHHHhCCCcEEEEEecC---------------CHHHHHHHHHHhCCCCceEEEEeCc----chHHHHhCCc
Q 045485 58 GFVEKSAELKSKGVDIVACISVN---------------DAFVMKAWKENLGINDEVLLLSDGN----GVFTKAIGCE 115 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d---------------~~~~~~~~~~~~~~~~~~~~l~D~~----~~~~~~~gv~ 115 (164)
++.+..+++.++|..+++ +..| ...+.-+.+++.|+. ..+++..+ ..++++.|+.
T Consensus 412 ~~~~~~~~~a~~G~~~l~-va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~--vvMiTGDn~~TA~aIA~elGId 485 (679)
T PRK01122 412 ELDAAVDEVARKGGTPLV-VAEDNRVLGVIYLKDIVKPGIKERFAELRKMGIK--TVMITGDNPLTAAAIAAEAGVD 485 (679)
T ss_pred HHHHHHHHHHhCCCcEEE-EEECCeEEEEEEEeccCchhHHHHHHHHHHCCCe--EEEECCCCHHHHHHHHHHcCCc
Confidence 556666677767766555 3322 223333456667777 77777544 4567777774
No 353
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=31.22 E-value=82 Score=24.10 Aligned_cols=33 Identities=12% Similarity=0.444 Sum_probs=28.8
Q ss_pred EEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCcc
Q 045485 74 VACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCEL 116 (164)
Q Consensus 74 i~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 116 (164)
|. +|.|+-+.+++|.+.++.+ +.++++.+|+..
T Consensus 22 Iv-lS~~pge~lrKWR~~F~vS---------Q~elA~~l~vSp 54 (241)
T COG1709 22 IV-LSEDPGETLRKWREIFNVS---------QTELARELGVSP 54 (241)
T ss_pred eE-ecCChhHHHHHHHHHhCcc---------HHHHHHHhCCCc
Confidence 55 7899999999999999988 788999999874
No 354
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=30.87 E-value=1.5e+02 Score=22.84 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=29.4
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.+.+.++.+.++++|+.+.. +|..+.+.+...++..++.
T Consensus 103 ~~g~~e~L~~Lk~~g~~l~i-vTn~~~~~~~~~l~~~~i~ 141 (272)
T PRK13223 103 YPGVRDTLKWLKKQGVEMAL-ITNKPERFVAPLLDQMKIG 141 (272)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EECCcHHHHHHHHHHcCcH
Confidence 57778888888888987655 7777766677777777765
No 355
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=30.74 E-value=2.3e+02 Score=21.22 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.3
Q ss_pred eEEEEeCcchHHHHhCCcc
Q 045485 98 VLLLSDGNGVFTKAIGCEL 116 (164)
Q Consensus 98 ~~~l~D~~~~~~~~~gv~~ 116 (164)
-+++.|.++.+.++||+..
T Consensus 167 ~~vYfdQ~g~Lt~rF~I~~ 185 (202)
T TIGR02743 167 SRIYFDQHGKLTQKFGIKH 185 (202)
T ss_pred CceEEcCCchHhhccCcee
Confidence 6688898999999999973
No 356
>PRK11712 ribonuclease G; Provisional
Probab=30.66 E-value=1.8e+02 Score=25.05 Aligned_cols=108 Identities=10% Similarity=0.068 Sum_probs=54.3
Q ss_pred CcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC--CceEEEEeCcchHHHHhCCccccCCCCC-C
Q 045485 48 TPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN--DEVLLLSDGNGVFTKAIGCELDLSDKPM-G 124 (164)
Q Consensus 48 cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~--~~~~~l~D~~~~~~~~~gv~~~~~~~~~-~ 124 (164)
+|.|..++.+-+.+...++...++.-|.|=+.+.-+++++|++..... ....++ +.+..+...||+.....+-.. .
T Consensus 205 ~p~ll~~e~~~~~~~lrD~~~~~~~~IivD~~~~~~~i~~~~~~~~p~~~~~v~~y-~~~~plF~~y~ie~~i~~~l~~~ 283 (489)
T PRK11712 205 TRYQLYGELALAQRVLRDFVGAELDRIRVDSRLTYEELKEFTSEYIPEMTDKLEHY-SGRQPIFDLYDVENEIQRALERK 283 (489)
T ss_pred CCeEEEcCCcHHHHHHHHhccCCCCEEEECCHHHHHHHHHHHHHhCccccceeEEe-cCCCChhHhcCHHHHHHHHhcCc
Confidence 454544334555555555555555544422222345567777665432 113343 344678888887643111000 0
Q ss_pred CCcceeEEEEEecCCcEEEEEeecCCceeecC
Q 045485 125 LGVRSRRYALLAENGVVKVLNLEEGGAFTFSG 156 (164)
Q Consensus 125 ~~~~~p~~~lid~~G~I~~~~~~~~~~~~~~~ 156 (164)
+-++.-++++|++---+..+.++.+......+
T Consensus 284 V~L~sGg~lvIe~TeAlt~IDVnsGk~~~~~~ 315 (489)
T PRK11712 284 VELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 (489)
T ss_pred EEcCCCcEEEEeccccEEEEEecCCCCCCCCC
Confidence 11344457788877666667766543333333
No 357
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=30.41 E-value=1.7e+02 Score=21.27 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=32.0
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEE
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
+...+...+++++|+.++. .+.-+...+..++.+.++. .+++.
T Consensus 18 ~~~~~al~~l~~~g~~~~i-~TGR~~~~~~~~~~~~~~~--~~~I~ 60 (254)
T PF08282_consen 18 PETIEALKELQEKGIKLVI-ATGRSYSSIKRLLKELGID--DYFIC 60 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEE-ECSSTHHHHHHHHHHTTHC--SEEEE
T ss_pred HHHHHHHHhhcccceEEEE-EccCcccccccccccccch--hhhcc
Confidence 4555556678889998777 7888888899999988876 44443
No 358
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=30.39 E-value=1.2e+02 Score=27.21 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=16.9
Q ss_pred HHHHHHhCCCCceEEEEeCc----chHHHHhCCc
Q 045485 86 KAWKENLGINDEVLLLSDGN----GVFTKAIGCE 115 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~l~D~~----~~~~~~~gv~ 115 (164)
-+.+++.|+. ..+++..+ ..++++.|+.
T Consensus 450 I~~Lr~~GI~--vvMiTGDn~~TA~aIA~elGI~ 481 (673)
T PRK14010 450 FRELREMGIE--TVMCTGDNELTAATIAKEAGVD 481 (673)
T ss_pred HHHHHHCCCe--EEEECCCCHHHHHHHHHHcCCc
Confidence 3445666776 66666543 4566777764
No 359
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=30.30 E-value=67 Score=25.62 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=15.6
Q ss_pred EEEEecCCcEEEEEeec
Q 045485 132 YALLAENGVVKVLNLEE 148 (164)
Q Consensus 132 ~~lid~~G~I~~~~~~~ 148 (164)
.|+||++|+++|....+
T Consensus 107 vf~vd~~G~~vy~~~~d 123 (295)
T COG3322 107 VFVVDPSGKLVYSKLVD 123 (295)
T ss_pred EEEECCCCCEEEEeeec
Confidence 89999999999999873
No 360
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=30.21 E-value=1.1e+02 Score=23.38 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=27.8
Q ss_pred hHHHhHHHHHhCCCcEEEEEecC---CHHHHHHH-HHHhCCC--CceEEEE
Q 045485 58 GFVEKSAELKSKGVDIVACISVN---DAFVMKAW-KENLGIN--DEVLLLS 102 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d---~~~~~~~~-~~~~~~~--~~~~~l~ 102 (164)
...++.+.++++|+.+.. |+.- ..+...++ ++.+|++ ..|.++.
T Consensus 118 Ga~elL~~L~~~G~~I~i-VTnR~~~k~~~t~~~Llk~~gip~~~~f~vil 167 (237)
T PRK11009 118 VARQLIDMHVKRGDSIYF-ITGRTATKTETVSKTLADDFHIPADNMNPVIF 167 (237)
T ss_pred HHHHHHHHHHHCCCeEEE-EeCCCCcccHHHHHHHHHHcCCCcccceeEEE
Confidence 378888999899998777 6652 23444444 4458883 2344443
No 361
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=30.05 E-value=67 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=18.0
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHHhCCCc
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVD 72 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~ 72 (164)
|.+..|..||+|... ...++...+--+..|+.
T Consensus 49 I~lisGPGCPVCVtp-~~~ID~ai~LA~~~~vi 80 (355)
T PF01924_consen 49 IELISGPGCPVCVTP-QGDIDAAIELAKRPGVI 80 (355)
T ss_dssp EEEEE-S--TTTTS--HHHHHHHHHHHTT--EE
T ss_pred cEEecCCCCccEECc-HHHHHHHHHHhCCCCeE
Confidence 345558889999986 77777776655456653
No 362
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=29.80 E-value=2e+02 Score=22.11 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=25.5
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
...+..+..++.+.|+.|++++|...+.-..-| +++|++
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w-~~Lgi~ 233 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDMGSNNISLW-RELGIS 233 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCcchHHHH-HHcCCC
Confidence 455677778899999999995555454444333 445554
No 363
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=29.67 E-value=96 Score=18.10 Aligned_cols=10 Identities=20% Similarity=0.414 Sum_probs=7.4
Q ss_pred CCCCcCCCcC
Q 045485 45 GAFTPTCSQK 54 (164)
Q Consensus 45 ~~~cp~C~~~ 54 (164)
..+||.|.+-
T Consensus 6 ~~~~p~~~rv 15 (71)
T cd03037 6 YEHCPFCVKA 15 (71)
T ss_pred cCCCcHhHHH
Confidence 3579999873
No 364
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=29.41 E-value=1.9e+02 Score=20.81 Aligned_cols=36 Identities=8% Similarity=-0.008 Sum_probs=27.1
Q ss_pred HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 59 FVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 59 l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..++.+.++++|+.+.. +|..+...+...++.+|+.
T Consensus 111 ~~~~L~~l~~~g~~~~i-~T~~~~~~~~~~l~~~gl~ 146 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAV-VTGRPRKDAAKFLTTHGLE 146 (197)
T ss_pred HHHHHHHHHHcCCcEEE-ECCCCHHHHHHHHHHcCch
Confidence 36677778888887544 7777777788888888875
No 365
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=29.41 E-value=1.6e+02 Score=19.79 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=27.8
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLG 93 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~ 93 (164)
.+.+.++.+.++++|+.+.. +|.. .++.....++..+
T Consensus 31 ~~gv~e~L~~Lk~~g~~l~i-~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGFLLAL-ASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHCCeEEEE-EeCCCCHHHHHHHHHhcc
Confidence 57888999999999987555 7777 6666666666665
No 366
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=29.37 E-value=1.5e+02 Score=23.35 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=33.9
Q ss_pred cCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC---HHHHHHHHHHhCCC
Q 045485 49 PTCSQKHLPGFVEKSAELKSKGVDIVACISVND---AFVMKAWKENLGIN 95 (164)
Q Consensus 49 p~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~---~~~~~~~~~~~~~~ 95 (164)
..|. .+|...++++.++++|+.|+. ||.=+ .+...+++++.|++
T Consensus 142 ~~Ap--Alp~al~ly~~l~~~G~kIf~-VSgR~e~~r~aT~~NL~kaGy~ 188 (275)
T TIGR01680 142 GEAP--ALPETLKNYNKLVSLGFKIIF-LSGRLKDKQAVTEANLKKAGYH 188 (275)
T ss_pred ccCC--CChHHHHHHHHHHHCCCEEEE-EeCCchhHHHHHHHHHHHcCCC
Confidence 3444 489999999999999999988 66533 34467889999986
No 367
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=29.29 E-value=2e+02 Score=24.37 Aligned_cols=39 Identities=10% Similarity=0.235 Sum_probs=32.4
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+..|.++.++++++|+.++. ...++.+.+.+++++++.+
T Consensus 54 ~esL~~L~~~L~~~G~~L~v-~~G~p~~vl~~l~~~~~~~ 92 (471)
T TIGR03556 54 IGCLQELQQRYQQAGSQLLI-LQGDPVQLIPQLAQQLGAK 92 (471)
T ss_pred HHHHHHHHHHHHHCCCCeEE-EECCHHHHHHHHHHHcCCC
Confidence 46678888999999999877 7778888888888888876
No 368
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=29.22 E-value=58 Score=17.57 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=14.5
Q ss_pred CCcCCCcCchhhHHHhHHHHH
Q 045485 47 FTPTCSQKHLPGFVEKSAELK 67 (164)
Q Consensus 47 ~cp~C~~~~l~~l~~~~~~~~ 67 (164)
.|+.|.+..-.+|+++...+.
T Consensus 15 dC~~C~~~G~CeLQ~~~~~~g 35 (41)
T PF10588_consen 15 DCPTCDKNGNCELQDLAYEYG 35 (41)
T ss_dssp -TTT-TTGGG-HHHHHHHHH-
T ss_pred cCcCCCCCCCCHHHHHHHHhC
Confidence 599998877889999887763
No 369
>PLN02887 hydrolase family protein
Probab=29.17 E-value=2.3e+02 Score=24.95 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=27.6
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+.-.+...+++++|+.++. .+.-+...+..++++.++.
T Consensus 328 ~~t~eAI~kl~ekGi~~vI-ATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 328 ETNAKALKEALSRGVKVVI-ATGKARPAVIDILKMVDLA 365 (580)
T ss_pred HHHHHHHHHHHHCCCeEEE-EcCCCHHHHHHHHHHhCcc
Confidence 4444556778889998777 6777777788888877754
No 370
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=29.11 E-value=36 Score=21.99 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=25.2
Q ss_pred CCCcCCCcCchhhHHHhHHHHHhCCCcE--EEEEecC-CHHHHHHHHHHhCCCCceEEEEeCcchH
Q 045485 46 AFTPTCSQKHLPGFVEKSAELKSKGVDI--VACISVN-DAFVMKAWKENLGINDEVLLLSDGNGVF 108 (164)
Q Consensus 46 ~~cp~C~~~~l~~l~~~~~~~~~~~v~v--i~~is~d-~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 108 (164)
.+||.|++. . + .+.++|+.. +- +..+ .+ ..|++-.-.. ..|++.|.+..+
T Consensus 20 g~cpf~~rv-r-----l--~L~eKgi~ye~~~-vd~~~~p---~~~~~~nP~g-~vPvL~~~~~~i 72 (91)
T cd03061 20 GNCPFCQRL-F-----M--VLWLKGVVFNVTT-VDMKRKP---EDLKDLAPGT-QPPFLLYNGEVK 72 (91)
T ss_pred CCChhHHHH-H-----H--HHHHCCCceEEEE-eCCCCCC---HHHHHhCCCC-CCCEEEECCEEe
Confidence 358888864 2 2 233456553 33 3322 23 2344433332 488888865433
No 371
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=29.08 E-value=1.3e+02 Score=25.84 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=41.0
Q ss_pred hhhHHHhHHHHHhCCC-cEEEEEecCCHHHHHHHHHHhCCCCceEEE-EeCcchHHHHhCC
Q 045485 56 LPGFVEKSAELKSKGV-DIVACISVNDAFVMKAWKENLGINDEVLLL-SDGNGVFTKAIGC 114 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v-~vi~~is~d~~~~~~~~~~~~~~~~~~~~l-~D~~~~~~~~~gv 114 (164)
.|...+..++++++|+ .+.. +|.|+....++.+++.|+...|.-. .+....+.++++.
T Consensus 364 ~~~~~e~i~~L~~~Gi~~v~v-vTgd~~~~a~~i~~~lgi~~~f~~~~p~~K~~~i~~l~~ 423 (536)
T TIGR01512 364 RPDAAEAIAELKALGIEKVVM-LTGDRRAVAERVARELGIDEVHAELLPEDKLEIVKELRE 423 (536)
T ss_pred hHHHHHHHHHHHHcCCCcEEE-EcCCCHHHHHHHHHHcCChhhhhccCcHHHHHHHHHHHh
Confidence 4777888899999999 7666 8999999999999999986223221 2223455555553
No 372
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=29.02 E-value=1.6e+02 Score=18.92 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=16.4
Q ss_pred EEEEecCCHHHHHHHHHHhCCC
Q 045485 74 VACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 74 i~~is~d~~~~~~~~~~~~~~~ 95 (164)
+. +..++.++..+.++..|..
T Consensus 62 ~~-~~v~dvd~~~~~l~~~G~~ 82 (120)
T cd08350 62 CC-LRLPDVAALHAEFRAAGLP 82 (120)
T ss_pred EE-EEeCCHHHHHHHHHHhCcc
Confidence 44 6778888888888888876
No 373
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=28.94 E-value=28 Score=20.38 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=6.2
Q ss_pred CCCCcCCCc
Q 045485 45 GAFTPTCSQ 53 (164)
Q Consensus 45 ~~~cp~C~~ 53 (164)
..+||.|.+
T Consensus 6 ~~~~~~~~~ 14 (73)
T cd03056 6 FPLSGNCYK 14 (73)
T ss_pred CCCCccHHH
Confidence 456888875
No 374
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=28.70 E-value=1.4e+02 Score=25.94 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=32.8
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|...+..++++++|+.+.. +|.|+....++.++++|++
T Consensus 407 ~~~a~e~i~~Lk~~Gi~v~i-lSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 407 RPEAKEVIQALKRRGIEPVM-LTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred cHHHHHHHHHHHHcCCeEEE-EcCCCHHHHHHHHHHcCCc
Confidence 46777888889999998665 8999988889999999886
No 375
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=28.56 E-value=1.7e+02 Score=24.21 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=34.1
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLL 101 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l 101 (164)
.|.+.++.+.+++.|+.+.. +|..+.+.+...++.+|+...|..+
T Consensus 218 ~pGa~ElL~~Lk~~GiklaI-aSn~~~~~~~~~L~~lgL~~yFd~I 262 (381)
T PLN02575 218 RTGSQEFVNVLMNYKIPMAL-VSTRPRKTLENAIGSIGIRGFFSVI 262 (381)
T ss_pred CcCHHHHHHHHHHCCCeEEE-EeCCCHHHHHHHHHHcCCHHHceEE
Confidence 57778888888888987444 8888888888889999876444333
No 376
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=28.56 E-value=75 Score=21.07 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=22.1
Q ss_pred EEEEecCCHHHHHHHHHHhCCCCceEEEEeC
Q 045485 74 VACISVNDAFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 74 i~~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
+- +.-++.|+..+|++++|+. |.|..-.
T Consensus 51 v~-l~F~skE~Ai~yaer~G~~--Y~V~~p~ 78 (101)
T PF04800_consen 51 VR-LKFDSKEDAIAYAERNGWD--YEVEEPK 78 (101)
T ss_dssp CE-EEESSHHHHHHHHHHCT-E--EEEE-ST
T ss_pred eE-eeeCCHHHHHHHHHHcCCe--EEEeCCC
Confidence 44 6789999999999999999 9887544
No 377
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=28.55 E-value=1.8e+02 Score=19.36 Aligned_cols=55 Identities=18% Similarity=0.078 Sum_probs=36.9
Q ss_pred CCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEe
Q 045485 69 KGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNL 146 (164)
Q Consensus 69 ~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~ 146 (164)
.++.-++ +..++.++..+-+++.|.. ++..+.. ..+ +. +..|+-|++|.+....-
T Consensus 68 ~g~~hia-~~V~Dvda~~~~l~~~G~~----v~~~p~~---~~~-------------~~--~~~~i~dp~G~~ie~~~ 122 (136)
T cd08342 68 DGVCDVA-FRVDDAAAAYERAVARGAK----PVQEPVE---EPG-------------EL--KIAAIKGYGDSLHTLVD 122 (136)
T ss_pred CceEEEE-EEeCCHHHHHHHHHHcCCe----EccCcee---cCC-------------eE--EEEEEeccCCcEEEEEe
Confidence 4565677 7888898888888888866 3334332 111 12 45899999999876554
No 378
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=28.45 E-value=1.7e+02 Score=18.96 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=14.0
Q ss_pred eEEEEEecCCcEEEEEe
Q 045485 130 RRYALLAENGVVKVLNL 146 (164)
Q Consensus 130 p~~~lid~~G~I~~~~~ 146 (164)
+..++.|++|.++....
T Consensus 104 ~~~~f~DPdG~~iEl~~ 120 (123)
T cd08351 104 RGVYFLDPDGHLLEIIT 120 (123)
T ss_pred eEEEEECCCCCEEEEEe
Confidence 66999999999876654
No 379
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=28.40 E-value=94 Score=24.43 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=17.9
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhC
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSK 69 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~ 69 (164)
...+..|||.|-. .-..+.+.+.+.+.
T Consensus 12 ~~~~~~~CpGCg~--~i~~~~v~~al~e~ 38 (277)
T PRK09628 12 DKMPTLWCWGCGD--GVILKSIIRAIDKL 38 (277)
T ss_pred CCCCCCcCCCCCC--chHHHHHHHHHHHh
Confidence 3457789999974 34556666666544
No 380
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=28.35 E-value=1.7e+02 Score=18.98 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=32.5
Q ss_pred HhHHHHHhCCCcEEEEEecCCHHH----HHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 61 EKSAELKSKGVDIVACISVNDAFV----MKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 61 ~~~~~~~~~~v~vi~~is~d~~~~----~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
+....++...+..|. ++.|.++. ...+.+.++++ +-.+.....++.+..|..
T Consensus 23 ~v~kai~~gkaklVi-iA~D~~~~~~~~i~~~c~~~~Ip--~~~~~~tk~eLG~a~Gk~ 78 (99)
T PRK01018 23 RTIKAIKLGKAKLVI-VASNCPKDIKEDIEYYAKLSGIP--VYEYEGSSVELGTLCGKP 78 (99)
T ss_pred HHHHHHHcCCceEEE-EeCCCCHHHHHHHHHHHHHcCCC--EEEECCCHHHHHHHhCCC
Confidence 444555555566666 77775443 34456667777 655545667888888864
No 381
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=28.21 E-value=49 Score=23.77 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=18.3
Q ss_pred cCCCCcCCCcCchhhHHHhHHHHHh
Q 045485 44 PGAFTPTCSQKHLPGFVEKSAELKS 68 (164)
Q Consensus 44 ~~~~cp~C~~~~l~~l~~~~~~~~~ 68 (164)
+-+|||.|.. -+.+..+.+.+.+
T Consensus 3 ~~~~c~gc~~--~~~~~~l~~~l~~ 25 (178)
T cd02008 3 PPGLCPGCPH--RPSFYALRKAFKK 25 (178)
T ss_pred CCCcCCCCCC--hHHHHHHHHHhcC
Confidence 3578999993 6899999888864
No 382
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=28.21 E-value=1.6e+02 Score=18.67 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=30.0
Q ss_pred EecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 77 ISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 77 is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
+..++.+++.+.++..|++ + ..++ ...+ ....++.||+|..+.++.+
T Consensus 63 ~~~~d~~~~~~~l~~~Gi~--~--~~~~-----~~~~---------------~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 63 IFEDDFAAFARHLEAAGVA--L--AAAP-----PGAD---------------PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred eEhhhHHHHHHHHHHcCCc--e--ecCC-----CcCC---------------CCEEEEECCCCCEEEEecC
Confidence 3456777777777777776 3 2221 0111 1348999999999888764
No 383
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=28.17 E-value=1.5e+02 Score=21.00 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=18.5
Q ss_pred hHHHhHHHHHhCCCcEEEEEecCC
Q 045485 58 GFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
.+++..+++++.|.+-|.+++.|.
T Consensus 72 ~L~~w~~~l~~~GFkhV~~lT~D~ 95 (142)
T PF10673_consen 72 RLNDWCEELKESGFKHVFYLTSDS 95 (142)
T ss_pred HHHHHHHHHHhcCCcEEEEEecCc
Confidence 367777888888888777688875
No 384
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=27.87 E-value=72 Score=20.33 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=13.6
Q ss_pred EEEEEecCCcEEEEEee
Q 045485 131 RYALLAENGVVKVLNLE 147 (164)
Q Consensus 131 ~~~lid~~G~I~~~~~~ 147 (164)
+..++|++++|++....
T Consensus 11 ~i~~vD~~~~I~~~n~~ 27 (106)
T PF13596_consen 11 GIIFVDRNLRIRYFNPA 27 (106)
T ss_dssp EEEEEETTSBEEEE-SC
T ss_pred CEEEEcCCCeEEEeChh
Confidence 47999999999987654
No 385
>PRK04011 peptide chain release factor 1; Provisional
Probab=27.87 E-value=1.4e+02 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=13.0
Q ss_pred hHHHhHHHHHhCCCcEEEEEecCCH
Q 045485 58 GFVEKSAELKSKGVDIVACISVNDA 82 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d~~ 82 (164)
.+..+.+..++.|..|.. ||.+++
T Consensus 368 ~v~~l~e~a~~~g~~v~i-is~~~e 391 (411)
T PRK04011 368 IIEELSELAEQSGTKVEV-ISTDTE 391 (411)
T ss_pred HHHHHHHHHHHcCCEEEE-ECCCCh
Confidence 344455555566666555 555543
No 386
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=27.85 E-value=1.4e+02 Score=22.24 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=40.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCc--eEEEEe------Cc----chHHHHhCCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDE--VLLLSD------GN----GVFTKAIGCE 115 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~--~~~l~D------~~----~~~~~~~gv~ 115 (164)
.|.+.++.+.++++|+.+.. +|..+.+.+...++..++... ..+.+| |+ ..+.+++|+.
T Consensus 95 ~~g~~e~L~~Lk~~g~~~~i-~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~ 165 (224)
T PRK14988 95 REDTVPFLEALKASGKRRIL-LTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLK 165 (224)
T ss_pred CCCHHHHHHHHHhCCCeEEE-EeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCC
Confidence 57888899999999988444 777777777777887876422 334444 22 2345777764
No 387
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=27.83 E-value=16 Score=20.36 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=16.6
Q ss_pred CCCcCCCcCchhhHHHhHHHHH
Q 045485 46 AFTPTCSQKHLPGFVEKSAELK 67 (164)
Q Consensus 46 ~~cp~C~~~~l~~l~~~~~~~~ 67 (164)
-.|.+|+.- ++.+.++.+++.
T Consensus 17 GkC~PCR~G-t~~l~~~l~~i~ 37 (46)
T PF10589_consen 17 GKCTPCREG-TRQLAEILEKIV 37 (46)
T ss_dssp S--HHHHCC-CCHHHHHHHHHT
T ss_pred CCCCCcHhH-HHHHHHHHHHHH
Confidence 469999986 999999998885
No 388
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.77 E-value=2.3e+02 Score=23.72 Aligned_cols=38 Identities=8% Similarity=-0.011 Sum_probs=32.0
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..|..+.+++++.|..++. ...++.+.+.+++++++..
T Consensus 78 esL~~L~~~L~~~g~~L~v-~~g~~~~~l~~l~~~~~i~ 115 (454)
T TIGR00591 78 GGLDEVANECERLIIPFHL-LDGPPKELLPYFVDLHAAA 115 (454)
T ss_pred HHHHHHHHHHHHcCCceEE-eecChHHHHHHHHHHcCCC
Confidence 4667888899999999877 7788888899999998886
No 389
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=27.68 E-value=3.2e+02 Score=21.86 Aligned_cols=92 Identities=11% Similarity=0.135 Sum_probs=54.3
Q ss_pred EEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC------------CHHH----HHHHHHHhCCCCceEEE
Q 045485 38 AILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN------------DAFV----MKAWKENLGINDEVLLL 101 (164)
Q Consensus 38 vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d------------~~~~----~~~~~~~~~~~~~~~~l 101 (164)
+||-|- .||..... .+.+. ..|.+.|+++|+|..+. ++++ .++++++.+++....++
T Consensus 37 TVv~~h---GsPGSH~D-FkYi~---~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~~~~i~~ 109 (297)
T PF06342_consen 37 TVVAFH---GSPGSHND-FKYIR---PPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDELGIKGKLIFL 109 (297)
T ss_pred eEEEec---CCCCCccc-hhhhh---hHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHcCCCCceEEE
Confidence 454443 37777665 55555 45667899999954332 2333 34566777887333333
Q ss_pred Ee-CcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 102 SD-GNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 102 ~D-~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
.- ...+-+-++.+.. |.-+..+|++=|--.+..+.
T Consensus 110 gHSrGcenal~la~~~-----------~~~g~~lin~~G~r~HkgIr 145 (297)
T PF06342_consen 110 GHSRGCENALQLAVTH-----------PLHGLVLINPPGLRPHKGIR 145 (297)
T ss_pred EeccchHHHHHHHhcC-----------ccceEEEecCCccccccCcC
Confidence 33 3345555555532 33458899998877666654
No 390
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=27.65 E-value=2e+02 Score=21.02 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=27.2
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+...+...+++++|+.++. .+.-+...+..+.+..++.
T Consensus 21 ~~~~~~i~~l~~~g~~~~~-~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 21 ERAIEAIRKAEKKGIPVSL-VTGNTVPFARALAVLIGTS 58 (215)
T ss_pred HHHHHHHHHHHHCCCEEEE-EcCCcchhHHHHHHHhCCC
Confidence 3444556667778988777 7777777778888887765
No 391
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=27.62 E-value=1.4e+02 Score=27.03 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=28.3
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+...+..+++++.|+.++. ++.|.+...++..++.|+.
T Consensus 445 ~~a~~aI~~l~~aGI~v~m-iTGD~~~tA~~IA~~lGI~ 482 (755)
T TIGR01647 445 HDTKETIERARHLGVEVKM-VTGDHLAIAKETARRLGLG 482 (755)
T ss_pred hhHHHHHHHHHHCCCeEEE-ECCCCHHHHHHHHHHcCCC
Confidence 3345556677778888777 8888888888888888875
No 392
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=27.58 E-value=1.9e+02 Score=21.88 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=25.5
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHH-HHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAW-KENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~-~~~~~~~ 95 (164)
.|.+.++...++++|+++.. +|..=. .+..+ ....|++
T Consensus 90 T~Gi~eLv~~L~~~~~~v~l-iSGGF~-~~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 90 TPGIRELVSRLHARGTQVYL-ISGGFR-QLIEPVAEQLGIP 128 (227)
T ss_pred CCCHHHHHHHHHHcCCeEEE-EcCChH-HHHHHHHHHhCCc
Confidence 46777888888999999877 776532 23333 3445666
No 393
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=27.50 E-value=87 Score=20.84 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=37.8
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-EecC--CHHHHHHHHHHhCCCCce-EEEEeCcchHHHHhCCc
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-ISVN--DAFVMKAWKENLGINDEV-LLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is~d--~~~~~~~~~~~~~~~~~~-~~l~D~~~~~~~~~gv~ 115 (164)
+|....|..|++. ... +++.|+.+..+ +..+ +.+++..|++..|++ . .=+....+..++.++..
T Consensus 3 iy~~~~C~t~rkA-~~~-------L~~~~i~~~~~di~~~p~t~~el~~~l~~~g~~--~~~~lin~~~~~~~~l~~~ 70 (114)
T TIGR00014 3 IYHNPRCSKSRNT-LAL-------LEDKGIEPEVVKYLKNPPTKSELEAIFAKLGLT--VAREMIRTKEALYKELGLS 70 (114)
T ss_pred EEECCCCHHHHHH-HHH-------HHHCCCCeEEEeccCCCcCHHHHHHHHHHcCCc--hHHHHHhcCCcHHHHcCCC
Confidence 4445678888874 432 33456665541 2222 678899999998765 2 11334556666776654
No 394
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=27.44 E-value=1.5e+02 Score=26.65 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=30.0
Q ss_pred hHHHhHHHHHhCCCcEEEEEecC-----------C----HHHHHHHHHHhCCCCceEEEEeCc----chHHHHhCCc
Q 045485 58 GFVEKSAELKSKGVDIVACISVN-----------D----AFVMKAWKENLGINDEVLLLSDGN----GVFTKAIGCE 115 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d-----------~----~~~~~~~~~~~~~~~~~~~l~D~~----~~~~~~~gv~ 115 (164)
.+.+..+++.++|..+++ +..+ + ..+.-+.+++.|+. ..+++..+ ..++++.|+.
T Consensus 413 ~~~~~~~~~a~~G~r~l~-va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~--v~miTGD~~~ta~~iA~~lGI~ 486 (675)
T TIGR01497 413 DLDQAVDQVARQGGTPLV-VCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIK--TIMITGDNRLTAAAIAAEAGVD 486 (675)
T ss_pred HHHHHHHHHHhCCCeEEE-EEECCEEEEEEEecccchhHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHcCCC
Confidence 455555666666665555 3322 1 22233445666776 66666543 4556677764
No 395
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=27.44 E-value=70 Score=18.80 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=6.3
Q ss_pred CCCCcCCCcC
Q 045485 45 GAFTPTCSQK 54 (164)
Q Consensus 45 ~~~cp~C~~~ 54 (164)
...||.|.+-
T Consensus 6 ~~~s~~~~~~ 15 (73)
T cd03049 6 SPTSPYVRKV 15 (73)
T ss_pred CCCCcHHHHH
Confidence 4567777753
No 396
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=27.39 E-value=2.2e+02 Score=24.33 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=33.2
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..++.+++.++++|+.++. ...|+.+.+.+++++.+.+
T Consensus 55 ~sL~~L~~~L~~~gi~L~v-~~~~~~~~l~~~~~~~~~~ 92 (461)
T COG0415 55 QSLQALQQSLAELGIPLLV-REGDPEQVLPELAKQLAAT 92 (461)
T ss_pred HHHHHHHHHHHHcCCceEE-EeCCHHHHHHHHHHHhCcc
Confidence 4588899999999999888 8889889999999999865
No 397
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=27.07 E-value=1.9e+02 Score=20.52 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=28.3
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCC-HHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVND-AFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~-~~~~~~~~~~~~~~ 95 (164)
.+.+.+..+.+++.|+.++. +|..+ ......+.+..++.
T Consensus 45 ~pgv~e~L~~Lk~~g~~l~I-~Sn~~~~~~~~~~~~~~gl~ 84 (170)
T TIGR01668 45 YPALRDWIEELKAAGRKLLI-VSNNAGEQRAKAVEKALGIP 84 (170)
T ss_pred ChhHHHHHHHHHHcCCEEEE-EeCCchHHHHHHHHHHcCCE
Confidence 57788888999999987655 77776 45555666667665
No 398
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=27.04 E-value=66 Score=24.35 Aligned_cols=41 Identities=7% Similarity=0.073 Sum_probs=32.8
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV 79 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~ 79 (164)
|-||||..| ...-|-|..- ...|+.+...| ..+.+|-+++.
T Consensus 111 gvwVvvhLy-~~gvp~c~Ll-~~~l~~la~kf--p~iKFVki~at 151 (240)
T KOG3170|consen 111 GVWVVVHLY-KQGVPLCALL-SHHLQSLACKF--PQIKFVKIPAT 151 (240)
T ss_pred ccEEEEEee-ccccHHHHHH-HHHHHHHhhcC--CcceEEecccc
Confidence 568888888 7789999987 78899999988 56777775544
No 399
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=26.79 E-value=1.2e+02 Score=22.77 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=29.3
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|.+.++.+.++++|+.+.. +|..+.+.+...++++++.
T Consensus 101 ~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~gl~ 139 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAALQ 139 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHHhc
Confidence 46667778888888887444 7877777778888887765
No 400
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=26.76 E-value=71 Score=26.26 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=23.0
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcE
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDI 73 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~v 73 (164)
|.+..|..||+|... ...+.+..+--...|+.+
T Consensus 54 ielisGPGCPVCVtp-~~~ID~ai~La~~~~vi~ 86 (364)
T PRK15062 54 IELIHGPGCPVCVTP-MGRIDAAIELASRPGVIL 86 (364)
T ss_pred cEEecCCCCCcEeCc-HHHHHHHHHHhCCCCeEE
Confidence 455568899999986 777777766444456543
No 401
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=26.73 E-value=2e+02 Score=19.17 Aligned_cols=58 Identities=10% Similarity=-0.056 Sum_probs=32.2
Q ss_pred hhHHHhHHHHHhCCCcEEEE-EecCCHHHHHHHHHHhCCCC-c-eEEEEeCcchHHHHhCCcc
Q 045485 57 PGFVEKSAELKSKGVDIVAC-ISVNDAFVMKAWKENLGIND-E-VLLLSDGNGVFTKAIGCEL 116 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~-is~d~~~~~~~~~~~~~~~~-~-~~~l~D~~~~~~~~~gv~~ 116 (164)
..|+++..+.++.|+.++.= +..++..+..+++++..-.. . -.+..| ..+.++|+|..
T Consensus 11 ~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~~~v~Id--P~~F~~y~I~~ 71 (113)
T PF09673_consen 11 ASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPCPGVQID--PRLFRQYNITA 71 (113)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCCcceeEC--hhHHhhCCceE
Confidence 45677777777667654431 12234444445555443221 1 345555 56899999984
No 402
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.60 E-value=2e+02 Score=19.10 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=35.9
Q ss_pred hCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEE
Q 045485 68 SKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVL 144 (164)
Q Consensus 68 ~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~ 144 (164)
..|+.-++ +..++.++..+.+++.|.. +. ..+. .+. . +. +..|+-||+|.++-+
T Consensus 85 ~~g~~hia-~~v~d~d~~~~~l~~~G~~--~~--~~~~-----~~~-~----------~~--r~~~~~DPdG~~iEl 138 (142)
T cd08353 85 ALGLRRVM-FAVDDIDARVARLRKHGAE--LV--GEVV-----QYE-N----------SY--RLCYIRGPEGILIEL 138 (142)
T ss_pred CCCceEEE-EEeCCHHHHHHHHHHCCCc--ee--CCce-----ecC-C----------Ce--EEEEEECCCCCEEEe
Confidence 34676788 8889999999999999877 32 1110 000 0 11 558899999988644
No 403
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=26.60 E-value=2.2e+02 Score=21.46 Aligned_cols=35 Identities=11% Similarity=0.340 Sum_probs=26.0
Q ss_pred HHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 60 VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 60 ~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.+...+++++|+.++. .+.-+...+..++++.++.
T Consensus 26 ~~ai~~~~~~G~~~~i-aTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 26 LEALARAREAGYKVII-VTGRHHVAIHPFYQALALD 60 (272)
T ss_pred HHHHHHHHHCCCEEEE-EcCCChHHHHHHHHhcCCC
Confidence 4555667889988766 6777777778888888776
No 404
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=26.57 E-value=1.9e+02 Score=22.94 Aligned_cols=59 Identities=22% Similarity=0.064 Sum_probs=39.5
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHH----hCCCCceEEEEe---Cc----chHHHHhCCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKEN----LGINDEVLLLSD---GN----GVFTKAIGCE 115 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~----~~~~~~~~~l~D---~~----~~~~~~~gv~ 115 (164)
.+.+++...+++++|+. ++|+|.++.+...+.+++ .++...|..+.. |+ ..+++.+|+.
T Consensus 33 ~~~~~e~L~~L~~~Gi~-lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~ 102 (320)
T TIGR01686 33 HKTLQEKIKTLKKQGFL-LALASKNDEDDAKKVFERRKDFILQAEDFDARSINWGPKSESLRKIAKKLNLG 102 (320)
T ss_pred HHHHHHHHHHHHhCCCE-EEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEecCchHHHHHHHHHHhCCC
Confidence 57889999999999986 554888888888888887 554423444322 22 3455667764
No 405
>PRK10976 putative hydrolase; Provisional
Probab=26.38 E-value=2.5e+02 Score=21.16 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=26.9
Q ss_pred HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 59 FVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 59 l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
-.+...+++++|+.++. .+.-+...+..++++.++.
T Consensus 24 ~~~ai~~l~~~G~~~~i-aTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 24 AKETLKLLTARGIHFVF-ATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred HHHHHHHHHHCCCEEEE-EcCCChHHHHHHHHhcCCC
Confidence 34455667789998777 7777777788888888876
No 406
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=26.31 E-value=73 Score=18.74 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=13.9
Q ss_pred EEEEecCCcEEEEEee
Q 045485 132 YALLAENGVVKVLNLE 147 (164)
Q Consensus 132 ~~lid~~G~I~~~~~~ 147 (164)
.|.||++|+|....+.
T Consensus 15 ~~~i~~~G~v~~~~i~ 30 (74)
T TIGR01352 15 RFTVDADGRVTSVSVL 30 (74)
T ss_pred EEEECCCCCEEEEEEE
Confidence 7999999999887765
No 407
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=26.31 E-value=2.4e+02 Score=19.85 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=31.8
Q ss_pred CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHh
Q 045485 45 GAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENL 92 (164)
Q Consensus 45 ~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~ 92 (164)
+..|-.|.+. .+|.+. -.+++++-++-+-.+.+.++...|+.+.
T Consensus 93 ~FGC~GCart--nEL~~~--lir~k~iPiLel~YP~~~ee~~~~V~~I 136 (143)
T PF09885_consen 93 AFGCMGCART--NELTKY--LIRQKGIPILELKYPTNEEEAIDFVNKI 136 (143)
T ss_pred cccccccccH--HHHHHH--HHhhcCCceEEeeCCCChHHHHHHHHHH
Confidence 4569999985 444433 3457899999966778888888887664
No 408
>PRK12359 flavodoxin FldB; Provisional
Probab=26.30 E-value=1.7e+02 Score=21.16 Aligned_cols=11 Identities=9% Similarity=0.154 Sum_probs=5.6
Q ss_pred HHHHHHHhCCC
Q 045485 85 MKAWKENLGIN 95 (164)
Q Consensus 85 ~~~~~~~~~~~ 95 (164)
+.+.+++.|..
T Consensus 104 l~~~l~~~Ga~ 114 (172)
T PRK12359 104 LHDKLAPKGVK 114 (172)
T ss_pred HHHHHHhCCCe
Confidence 44455555554
No 409
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.18 E-value=1.4e+02 Score=17.33 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEecC--CHHHHHHHHHHhCCCCceEEEEe
Q 045485 74 VACISVN--DAFVMKAWKENLGINDEVLLLSD 103 (164)
Q Consensus 74 i~~is~d--~~~~~~~~~~~~~~~~~~~~l~D 103 (164)
+.+++.+ +...+.+|++..|.. +....+
T Consensus 29 l~v~~d~~~~~~~i~~~~~~~g~~--~~~~~~ 58 (69)
T cd00291 29 LEVLLDDPGAVEDIPAWAKETGHE--VLEVEE 58 (69)
T ss_pred EEEEecCCcHHHHHHHHHHHcCCE--EEEEEE
Confidence 4434444 378889999999987 655544
No 410
>PF10150 RNase_E_G: Ribonuclease E/G family; InterPro: IPR019307 Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs []. RNA-binding protein AU-1 binds to RNA loop regions that are with AU-rich sequences [].; PDB: 2BX2_L 2VRT_D 2VMK_D 2C4R_L 1SMX_B 1SLJ_A 2C0B_L 1SN8_B.
Probab=26.12 E-value=1e+02 Score=24.06 Aligned_cols=100 Identities=15% Similarity=0.226 Sum_probs=45.7
Q ss_pred CCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCH---HHHHHHHHHhCCC--CceEEEEeCcchHHHHhCCccccCCC
Q 045485 47 FTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDA---FVMKAWKENLGIN--DEVLLLSDGNGVFTKAIGCELDLSDK 121 (164)
Q Consensus 47 ~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~---~~~~~~~~~~~~~--~~~~~l~D~~~~~~~~~gv~~~~~~~ 121 (164)
-||.|..+..+.+.+...++-..++.-|- .|+. +.+++|++..... ....++.|. ..+...|++.....+.
T Consensus 81 ~~P~LLy~~~~~~~~~lrd~~~~~~~~Ii---vd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~lf~~~~i~~~i~~~ 156 (271)
T PF10150_consen 81 KAPSLLYREPDLYERVLRDYLDEDVDEII---VDDKEIYEEIKEYLKEFSPDLKDKIELYKDE-EPLFELYGIEEAIEKA 156 (271)
T ss_dssp -STEEEE-STSHHHHHHHHH--TTEEEEE---ES-HHHHHHHHHHHHTT-GGGTTTEEE--SS-S-HHHHTT-HHHHHHT
T ss_pred CCCeEEEeCCChhhHHHhhcCcCCCCEEE---ECCcHHHHHHHHHHHHhCccccceEEEecCC-CChHHhCCHHHHHHHH
Confidence 35666655456667777777655554444 3443 4456666554321 125666654 7788888887431110
Q ss_pred CCC-CCcceeEEEEEecCCcEEEEEeecCC
Q 045485 122 PMG-LGVRSRRYALLAENGVVKVLNLEEGG 150 (164)
Q Consensus 122 ~~~-~~~~~p~~~lid~~G~I~~~~~~~~~ 150 (164)
... +-++.-++++|++---...+.++.+.
T Consensus 157 ~~~~v~l~~Gg~l~Ie~TeAlt~IDVNsg~ 186 (271)
T PF10150_consen 157 LSRRVWLPSGGYLVIEQTEALTVIDVNSGK 186 (271)
T ss_dssp TSSEEE-TTS-EEEEEE-SS-EEEEEE---
T ss_pred hCCeEEeCCCeEEEEecCceEEEEEecCCC
Confidence 000 01233457888876666666666543
No 411
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=26.10 E-value=40 Score=20.50 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=10.8
Q ss_pred EEEEecCCcEEEEE
Q 045485 132 YALLAENGVVKVLN 145 (164)
Q Consensus 132 ~~lid~~G~I~~~~ 145 (164)
.||+|++|+|+..-
T Consensus 56 ~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 56 AFIVDKNGTIIAHP 69 (81)
T ss_dssp EEEEETTSBBCE-S
T ss_pred EEEEECCCCEEEeC
Confidence 78999999987644
No 412
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=26.01 E-value=2.4e+02 Score=20.46 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=29.2
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~~ 95 (164)
.|...++.+.++++|..+.. +|.. .....+..++..++.
T Consensus 47 ~pGv~elL~~Lk~~G~~l~I-~Sn~~~~~~~~~~L~~~~l~ 86 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGTYLAT-ASWNDVPEWAYEILGTFEIT 86 (174)
T ss_pred cccHHHHHHHHHHCCCEEEE-EeCCCChHHHHHHHHhCCcC
Confidence 46777888889989988555 7766 777777777877764
No 413
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=26.00 E-value=96 Score=19.32 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=9.5
Q ss_pred EEEEEecCCCCcCCCcC
Q 045485 38 AILFAVPGAFTPTCSQK 54 (164)
Q Consensus 38 vvl~f~~~~~cp~C~~~ 54 (164)
+.|+.+ ..||.|.+-
T Consensus 19 ~~Ly~~--~~sp~~~kv 33 (89)
T cd03055 19 IRLYSM--RFCPYAQRA 33 (89)
T ss_pred EEEEeC--CCCchHHHH
Confidence 444443 469999864
No 414
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=25.96 E-value=68 Score=15.46 Aligned_cols=9 Identities=22% Similarity=0.656 Sum_probs=7.2
Q ss_pred CCcCCCcCch
Q 045485 47 FTPTCSQKHL 56 (164)
Q Consensus 47 ~cp~C~~~~l 56 (164)
-||+|... +
T Consensus 3 ~CPiC~~~-v 11 (26)
T smart00734 3 QCPVCFRE-V 11 (26)
T ss_pred cCCCCcCc-c
Confidence 49999876 5
No 415
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=25.90 E-value=1.5e+02 Score=20.66 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=21.2
Q ss_pred hHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 62 KSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 62 ~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..++++++|+.+.. +|..+.......++.+++.
T Consensus 36 ~i~~Lk~~G~~i~I-vTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 36 GIRCALKSGIEVAI-ITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred HHHHHHHCCCEEEE-EECCCCHHHHHHHHHcCCC
Confidence 34566667776444 6666666666777777765
No 416
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=25.90 E-value=87 Score=18.38 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.7
Q ss_pred ceeEEEEEecCCcEEEEE
Q 045485 128 RSRRYALLAENGVVKVLN 145 (164)
Q Consensus 128 ~~p~~~lid~~G~I~~~~ 145 (164)
|.|-.+.+|.+|+|..+.
T Consensus 41 ~dRLnv~~D~~g~I~~v~ 58 (60)
T PF11720_consen 41 PDRLNVEVDDDGVITRVR 58 (60)
T ss_pred CCcEEEEECCCCcEEEEe
Confidence 447799999999998764
No 417
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=25.89 E-value=1.5e+02 Score=26.70 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=27.2
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
-+...+..++++++|+.++. ++.|+....+++.++.|+.
T Consensus 570 r~~a~~~i~~L~~~gi~~~l-lTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 570 RADARQAISELKALGIKGVM-LTGDNPRAAAAIAGELGID 608 (741)
T ss_pred chhHHHHHHHHHHCCCEEEE-EcCCCHHHHHHHHHHcCCC
Confidence 34556666677777777665 7777777777777777775
No 418
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=25.81 E-value=42 Score=20.20 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=8.8
Q ss_pred HHHHhCCCCceEEEEeCc
Q 045485 88 WKENLGINDEVLLLSDGN 105 (164)
Q Consensus 88 ~~~~~~~~~~~~~l~D~~ 105 (164)
|.+-.... ..|++.|.+
T Consensus 43 ~~~inP~g-~vP~L~~~g 59 (73)
T cd03052 43 FMRLNPTG-EVPVLIHGD 59 (73)
T ss_pred HHHhCcCC-CCCEEEECC
Confidence 44433332 477777644
No 419
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=25.74 E-value=1.8e+02 Score=18.38 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=7.1
Q ss_pred hhhHHHhHHHHHhCCCc
Q 045485 56 LPGFVEKSAELKSKGVD 72 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~ 72 (164)
+..|..+.+..+++|..
T Consensus 61 l~~L~~~~~~~~~~~~~ 77 (108)
T TIGR00377 61 LGVLLGRYKQVRRVGGQ 77 (108)
T ss_pred HHHHHHHHHHHHhcCCE
Confidence 34444444444444433
No 420
>PF14768 RPA_interact_C: Replication protein A interacting C-terminal
Probab=25.58 E-value=33 Score=21.65 Aligned_cols=8 Identities=25% Similarity=0.841 Sum_probs=6.9
Q ss_pred CCcCCCcC
Q 045485 47 FTPTCSQK 54 (164)
Q Consensus 47 ~cp~C~~~ 54 (164)
|||+|.+.
T Consensus 1 iCPVC~~~ 8 (82)
T PF14768_consen 1 ICPVCQKG 8 (82)
T ss_pred CCCccCCC
Confidence 79999985
No 421
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=25.57 E-value=2.7e+02 Score=23.33 Aligned_cols=67 Identities=9% Similarity=0.133 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCC--ceEEEEeCcchHHHHhCCccccCCCC-CCCCcceeEEEEEecCCcEEEEEeecCC
Q 045485 83 FVMKAWKENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKP-MGLGVRSRRYALLAENGVVKVLNLEEGG 150 (164)
Q Consensus 83 ~~~~~~~~~~~~~~--~~~~l~D~~~~~~~~~gv~~~~~~~~-~~~~~~~p~~~lid~~G~I~~~~~~~~~ 150 (164)
+++++|+....... ...++.+ ...+...|++......-. .-+-+|.-++++|++-=-+..+.++.+.
T Consensus 228 ~~~~~~~~~~~p~~~~~v~~y~~-~~~lf~~y~ie~~i~~~l~~~V~L~~Gg~lvIe~TEALtvIDVNsG~ 297 (414)
T TIGR00757 228 EEAKEFIQLYAPELVSKLKLYRG-SDPLFEGFQIEKQIDKATQRKVWLPSGGYIVIDQTEALTTIDVNSGR 297 (414)
T ss_pred HHHHHHHHHhCcccccceEEecC-CCChhHhhCHHHHHHHhcCCcEECCCCeEEEEecCccEEEEEecCCC
Confidence 44555666554220 1333333 356777888764311100 0012344568888887777777776543
No 422
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=25.36 E-value=2e+02 Score=23.02 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=35.8
Q ss_pred CCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC------CHHHHHHHHHH------hCCCCceEEEEeC
Q 045485 45 GAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN------DAFVMKAWKEN------LGINDEVLLLSDG 104 (164)
Q Consensus 45 ~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d------~~~~~~~~~~~------~~~~~~~~~l~D~ 104 (164)
..|=-....+++.+|+++.+.-++.+|.++-.||+. ..++.+..+++ .|.+ .|.++.|.
T Consensus 44 ~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr-~FailfDD 114 (306)
T PF07555_consen 44 SKWREPYPEEELAELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLGVR-SFAILFDD 114 (306)
T ss_dssp TTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEEE-TS
T ss_pred hhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcCCC-EEEEeecC
Confidence 345444444558999999999999999977768874 23444444444 3554 69999884
No 423
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.31 E-value=4.2e+02 Score=22.45 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=48.7
Q ss_pred CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC-----HHHHHHHHHHhCCCCceEEEEeCcchH
Q 045485 34 SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND-----AFVMKAWKENLGINDEVLLLSDGNGVF 108 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~-----~~~~~~~~~~~~~~~~~~~l~D~~~~~ 108 (164)
++++-||.|. +-.-..= .-..-+++..++.+|..+.. +..|+ -+.++++..+-+.+ .|--+.+.+...
T Consensus 98 K~kpsVimfV-GLqG~GK----TTtc~KlA~y~kkkG~K~~L-vcaDTFRagAfDQLkqnA~k~~iP-~ygsyte~dpv~ 170 (483)
T KOG0780|consen 98 KGKPSVIMFV-GLQGSGK----TTTCTKLAYYYKKKGYKVAL-VCADTFRAGAFDQLKQNATKARVP-FYGSYTEADPVK 170 (483)
T ss_pred cCCCcEEEEE-eccCCCc----ceeHHHHHHHHHhcCCceeE-EeecccccchHHHHHHHhHhhCCe-eEecccccchHH
Confidence 5677777776 2211111 12223555667778888777 77775 34566677777766 223333445444
Q ss_pred HHHhCCccccCCCCCCCCcceeEEEEEecCCcE
Q 045485 109 TKAIGCELDLSDKPMGLGVRSRRYALLAENGVV 141 (164)
Q Consensus 109 ~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I 141 (164)
...-|+.....+ + --.+|+|-.|+-
T Consensus 171 ia~egv~~fKke-----~---fdvIIvDTSGRh 195 (483)
T KOG0780|consen 171 IASEGVDRFKKE-----N---FDVIIVDTSGRH 195 (483)
T ss_pred HHHHHHHHHHhc-----C---CcEEEEeCCCch
Confidence 444444322000 0 126777777764
No 424
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=25.31 E-value=2.2e+02 Score=21.07 Aligned_cols=79 Identities=8% Similarity=0.070 Sum_probs=40.6
Q ss_pred CcCCCcC--chhhHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCC
Q 045485 48 TPTCSQK--HLPGFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMG 124 (164)
Q Consensus 48 cp~C~~~--~l~~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~ 124 (164)
++.|-.. ....|.+.++.++..|..++. .-.= +...++.+.+.. .. ..+++++..--....|...
T Consensus 37 ~~~c~l~~~aA~aL~~a~~~l~~~G~~L~I-~D~yRP~~aq~~~w~~~-~~--~~yVA~p~~~S~HsrG~AV-------- 104 (184)
T PRK10178 37 EARCLLHKDAEAALRKAVSIAQLAGLTLRI-YDAYRPQQAQQVLWDAC-PD--PQYVADLGRGSNHSRGTAI-------- 104 (184)
T ss_pred CCeEEECHHHHHHHHHHHHHHHhCCCeEEE-EeccCCHHHHHHHHHhC-CC--cCeeeCCCCCCCCCCceEE--------
Confidence 5666442 144566778888888887555 3332 334444444433 22 3455555321122333221
Q ss_pred CCcceeEEEEEecCCcEEEE
Q 045485 125 LGVRSRRYALLAENGVVKVL 144 (164)
Q Consensus 125 ~~~~~p~~~lid~~G~I~~~ 144 (164)
-.-|+|.+|+.+-+
T Consensus 105 ------DLTL~d~~G~~ldM 118 (184)
T PRK10178 105 ------DLTLVDAHGNILDM 118 (184)
T ss_pred ------EEEEECCCCCEecC
Confidence 25688888877443
No 425
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=25.21 E-value=1.8e+02 Score=25.12 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=29.5
Q ss_pred hhhHHHhHHHHHhCC-CcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKG-VDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~-v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|...+..+.++++| +.+.. +|.|+.....+.+++.|++
T Consensus 386 ~~g~~e~l~~L~~~g~i~v~i-vTgd~~~~a~~i~~~lgi~ 425 (556)
T TIGR01525 386 RPEAKEAIAALKRAGGIKLVM-LTGDNRSAAEAVAAELGID 425 (556)
T ss_pred hHhHHHHHHHHHHcCCCeEEE-EeCCCHHHHHHHHHHhCCC
Confidence 466777777788888 76555 7888887778888888875
No 426
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=25.11 E-value=2.5e+02 Score=21.17 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=28.1
Q ss_pred HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 59 FVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 59 l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
-.+...+++++|+.++. ++.-+...+..++++.++.
T Consensus 21 ~~~~i~~l~~~g~~~~~-~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 21 AKEVLERLQELGIPVIP-CTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHHHHHHHHCCCeEEE-EcCCCHHHHHHHHHHcCCC
Confidence 34555667778998877 7888888888999988875
No 427
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=25.07 E-value=3.4e+02 Score=21.28 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-EecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHh
Q 045485 35 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-ISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAI 112 (164)
Q Consensus 35 g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 112 (164)
+-++++|.+|+. + ..... ...+.++.+++ .+ ++++ -+..+.....+++...+-+ |.+++..+..+...+
T Consensus 127 ~lpv~iYn~P~~-t-g~~l~-~~~l~~L~~~~--pn--v~giK~ss~d~~~~~~~~~~~~~~--~~v~~G~d~~~~~~l 196 (294)
T TIGR02313 127 DFPIIIYNIPGR-A-AQEIA-PKTMARLRKDC--PN--IVGAKESNKDFEHLNHLFLEAGRD--FLLFCGIELLCLPML 196 (294)
T ss_pred CCCEEEEeCchh-c-CcCCC-HHHHHHHHhhC--CC--EEEEEeCCCCHHHHHHHHHhcCCC--eEEEEcchHHHHHHH
Confidence 568899987642 2 33333 45555554444 34 4552 3444567777777666656 999998876665444
No 428
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=24.97 E-value=3.2e+02 Score=22.85 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCc
Q 045485 82 AFVMKAWKENLGINDEVLLLSDGN 105 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~D~~ 105 (164)
++.+.+.+++.+.. +-+..|+|
T Consensus 224 l~~l~~~v~~~~ad--lGia~DgD 245 (448)
T PRK14315 224 PEALAKKVREVRAD--IGIALDGD 245 (448)
T ss_pred HHHHHHHHHHcCCC--EEEEEcCC
Confidence 44455555555555 55555554
No 429
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=24.66 E-value=46 Score=19.76 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=7.1
Q ss_pred EEecCCCCcCCCc
Q 045485 41 FAVPGAFTPTCSQ 53 (164)
Q Consensus 41 ~f~~~~~cp~C~~ 53 (164)
.+|....||.|.+
T Consensus 3 ~Ly~~~~s~~s~~ 15 (76)
T cd03053 3 KLYGAAMSTCVRR 15 (76)
T ss_pred EEEeCCCChhHHH
Confidence 3443445777765
No 430
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=24.60 E-value=1.1e+02 Score=23.76 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=30.6
Q ss_pred cEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEec-----------------CCHHHHHHHHHHhCC
Q 045485 37 KAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISV-----------------NDAFVMKAWKENLGI 94 (164)
Q Consensus 37 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~-----------------d~~~~~~~~~~~~~~ 94 (164)
..|+-.|.+-.|..|.-- -..|. ++.+++- ||+ +|. +..+++..|.+.++.
T Consensus 42 ~~VVELfTSQGCsSCPPA-d~~l~----k~a~~~~-vlA-LsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~ 109 (261)
T COG5429 42 LGVVELFTSQGCSSCPPA-DANLA----KLADDPG-VLA-LSYHVDYWDYLGWKDTLARKENTERQRAYARAFGA 109 (261)
T ss_pred ceEEEEeecCCcCCCChH-HHHHH----HhccCCC-EEE-EEEeecccccCCccccccchhhhHHHHHHHHhhcc
Confidence 356777778889888864 44444 4443332 677 553 235566666666654
No 431
>PF05742 NRDE: NRDE protein; InterPro: IPR008551 This family is found in eukaryotes, prokaryotes and viruses and has no known function. P54797 from SWISSPROT has been found to be expressed during early embryogenesis in Mus sp [].
Probab=24.47 E-value=1.1e+02 Score=23.87 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=19.9
Q ss_pred CCCcceeEEEEEecCCcEEEEEee
Q 045485 124 GLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 124 ~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
.+|+.+-+.++||++|+|.+....
T Consensus 234 ~YGTRssTvIlvd~~g~v~f~Er~ 257 (273)
T PF05742_consen 234 YYGTRSSTVILVDRDGKVTFIERT 257 (273)
T ss_pred CccCeeEEEEEEecCCCEEEEEEE
Confidence 346777789999999999998875
No 432
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=24.27 E-value=29 Score=23.27 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=27.1
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEE-EecC--CHHHHHHHHHHhCCC
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVAC-ISVN--DAFVMKAWKENLGIN 95 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~-is~d--~~~~~~~~~~~~~~~ 95 (164)
+|.-..|+.|+.. ... +.+.|+.+-.+ +..+ +.+++++|+++.|+.
T Consensus 4 iy~~p~C~~crkA-~~~-------L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~~ 52 (113)
T cd03033 4 FYEKPGCANNARQ-KAL-------LEAAGHEVEVRDLLTEPWTAETLRPFFGDLPVA 52 (113)
T ss_pred EEECCCCHHHHHH-HHH-------HHHcCCCcEEeehhcCCCCHHHHHHHHHHcCHH
Confidence 3335679999874 422 33445554331 2222 678899999977643
No 433
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=24.26 E-value=62 Score=20.28 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=17.8
Q ss_pred eEEEEEecCCcEEEEEeecCCceeecCHHHHHhh
Q 045485 130 RRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKA 163 (164)
Q Consensus 130 p~~~lid~~G~I~~~~~~~~~~~~~~~~~~~l~~ 163 (164)
|...++|.+|+++-...-. .++..++++.|..
T Consensus 43 P~L~l~d~~g~~~E~i~i~--~w~~d~i~efL~~ 74 (78)
T PF08806_consen 43 PELVLLDEDGEEVERINIE--KWKTDEIEEFLNE 74 (78)
T ss_dssp -EEEEE-SSS--SEEEE-S--SSSHCHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEcc--cCCHHHHHHHHHH
Confidence 6788999999975543322 3566677776653
No 434
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=24.25 E-value=1.5e+02 Score=20.84 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=21.9
Q ss_pred hCCCcEEEEEecCC---HHHHHHHHHHhCCCCceEE
Q 045485 68 SKGVDIVACISVND---AFVMKAWKENLGINDEVLL 100 (164)
Q Consensus 68 ~~~v~vi~~is~d~---~~~~~~~~~~~~~~~~~~~ 100 (164)
.+.+.++| +|.++ .....+|++++|+. -+|+
T Consensus 16 ~K~IAvVG-~S~~P~r~sy~V~kyL~~~GY~-ViPV 49 (140)
T COG1832 16 AKTIAVVG-ASDKPDRPSYRVAKYLQQKGYR-VIPV 49 (140)
T ss_pred CceEEEEe-cCCCCCccHHHHHHHHHHCCCE-EEee
Confidence 46677888 77763 56678899998876 3444
No 435
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=24.19 E-value=1.5e+02 Score=21.06 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=29.3
Q ss_pred EEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 38 AILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 38 vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.=+.+|.+..|.=|..+ +. .++..|++|=. +..|+-..++ +++|++
T Consensus 26 ~~~~vyksPnCGCC~~w-~~-------~mk~~Gf~Vk~-~~~~d~~alK---~~~gIp 71 (149)
T COG3019 26 TEMVVYKSPNCGCCDEW-AQ-------HMKANGFEVKV-VETDDFLALK---RRLGIP 71 (149)
T ss_pred eeEEEEeCCCCccHHHH-HH-------HHHhCCcEEEE-eecCcHHHHH---HhcCCC
Confidence 33455668899999975 53 34457777544 6777765554 446665
No 436
>PRK10200 putative racemase; Provisional
Probab=24.06 E-value=2.2e+02 Score=21.52 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=31.3
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEE
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
.+.|.+..+.+.+.|+..|. +..+++-....-+++ ..+ .|+++
T Consensus 61 ~~~l~~~~~~L~~~g~~~iv-iaCNTah~~~~~l~~-~~~--iPii~ 103 (230)
T PRK10200 61 GDILAEAALGLQRAGAEGIV-LCTNTMHKVADAIES-RCS--LPFLH 103 (230)
T ss_pred HHHHHHHHHHHHHcCCCEEE-ECCchHHHHHHHHHH-hCC--CCEee
Confidence 67888888999999999999 899987555443433 234 66665
No 437
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=24.05 E-value=80 Score=20.61 Aligned_cols=18 Identities=11% Similarity=0.475 Sum_probs=12.2
Q ss_pred EEEEecCCcEEEEEeecC
Q 045485 132 YALLAENGVVKVLNLEEG 149 (164)
Q Consensus 132 ~~lid~~G~I~~~~~~~~ 149 (164)
.-++|.||+|+|-.+.++
T Consensus 77 LAiv~~DsTiVYY~i~~G 94 (101)
T PF09631_consen 77 LAIVDDDSTIVYYKIHDG 94 (101)
T ss_dssp EEEE-TTS-EEEEEEE--
T ss_pred EEEEcCCCCEEEEEEeCC
Confidence 558899999999998764
No 438
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=24.05 E-value=69 Score=26.89 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=12.8
Q ss_pred EEEEecCCcEEEEE
Q 045485 132 YALLAENGVVKVLN 145 (164)
Q Consensus 132 ~~lid~~G~I~~~~ 145 (164)
.||+++||+|.|+.
T Consensus 92 ~fvva~dGkimYIS 105 (598)
T KOG3559|consen 92 IFVVAPDGKIMYIS 105 (598)
T ss_pred EEEEeCCCCEEEEe
Confidence 89999999999975
No 439
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=24.04 E-value=49 Score=17.66 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=16.1
Q ss_pred CCCcEEEEEecCCCCcCCCcC
Q 045485 34 SNKKAILFAVPGAFTPTCSQK 54 (164)
Q Consensus 34 ~g~~vvl~f~~~~~cp~C~~~ 54 (164)
+++.++|-..++-.|+.|-.+
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE~ 41 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGEE 41 (46)
T ss_pred CCEEEEEeCCCccccccCCCE
Confidence 567677778888889999753
No 440
>PF14903 WG_beta_rep: WG containing repeat
Probab=24.01 E-value=62 Score=16.01 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=10.1
Q ss_pred EEecCCcEEEEEee
Q 045485 134 LLAENGVVKVLNLE 147 (164)
Q Consensus 134 lid~~G~I~~~~~~ 147 (164)
+||.+|+++.-...
T Consensus 3 ~id~~G~~vi~~~y 16 (35)
T PF14903_consen 3 YIDKNGKIVIPPKY 16 (35)
T ss_pred EEeCCCCEEEEccc
Confidence 78999998764433
No 441
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=23.82 E-value=1.5e+02 Score=22.12 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=22.1
Q ss_pred CCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeC
Q 045485 69 KGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 69 ~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
.++.+|- |..++.......+.+||+. |.++-|.
T Consensus 32 ~~l~~i~-i~~~~lk~F~k~AkKyGV~--yav~kdk 64 (204)
T PF12687_consen 32 KGLKNIE-ITDEDLKEFKKEAKKYGVD--YAVKKDK 64 (204)
T ss_pred CCceEEe-cCHhhHHHHHHHHHHcCCc--eEEeecc
Confidence 4566666 6666666666777777777 7777654
No 442
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=23.79 E-value=1.4e+02 Score=23.83 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=27.2
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceE
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVL 99 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~ 99 (164)
-..|.++.+.|...|.. ...|-+++.+..+||.+ .|.
T Consensus 262 ~gAF~KlL~rLAaEGyd------ls~PiDLK~hWAKHGTN-ryv 298 (301)
T PF06217_consen 262 GGAFKKLLERLAAEGYD------LSNPIDLKDHWAKHGTN-RYV 298 (301)
T ss_pred HHHHHHHHHHHHhcccc------cCCccchHHHHHhcCCc-ceE
Confidence 46789999999888754 23466778888899976 343
No 443
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=23.76 E-value=88 Score=25.76 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=22.7
Q ss_pred EEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcE
Q 045485 40 LFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDI 73 (164)
Q Consensus 40 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~v 73 (164)
|.+..|..||+|... ...+....+--...|+.+
T Consensus 60 IelisGPGCPVCVtp-~~~ID~ai~LA~~~~vii 92 (369)
T TIGR00075 60 LELVHGPGCPVCVTP-MERIDEAIELATIPEIIF 92 (369)
T ss_pred cEEecCCCCCcEeCc-HHHHHHHHHHhCCCCeEE
Confidence 455668899999986 777777765443466543
No 444
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=23.76 E-value=2e+02 Score=18.18 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=22.1
Q ss_pred HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 59 FVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 59 l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+.++.+.|.+.|+.+++. +...+|++++|++
T Consensus 2 ~~~~a~~l~~lG~~i~AT------~gTa~~L~~~Gi~ 32 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIYAT------EGTAKFLKEHGIE 32 (95)
T ss_dssp HHHHHHHHHHTTSEEEEE------HHHHHHHHHTT--
T ss_pred HHHHHHHHHHCCCEEEEC------hHHHHHHHHcCCC
Confidence 456778888899998882 4446888889887
No 445
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=23.75 E-value=2.9e+02 Score=21.53 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=39.0
Q ss_pred hhHHHhHHHHHhC-C-CcEEEEEecCC-----HHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcce
Q 045485 57 PGFVEKSAELKSK-G-VDIVACISVND-----AFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRS 129 (164)
Q Consensus 57 ~~l~~~~~~~~~~-~-v~vi~~is~d~-----~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~ 129 (164)
--+.++...+..+ | ..|.. |+.|+ .+.+..|.+..+++ +....++ ..+.+.+.-...
T Consensus 209 Tt~~kLa~~~~~~~g~~~V~l-i~~D~~r~~a~eql~~~~~~~~~p--~~~~~~~-~~l~~~l~~~~~------------ 272 (282)
T TIGR03499 209 TTLAKLAARFVLEHGNKKVAL-ITTDTYRIGAVEQLKTYAKILGVP--VKVARDP-KELRKALDRLRD------------ 272 (282)
T ss_pred HHHHHHHHHHHHHcCCCeEEE-EECCccchhHHHHHHHHHHHhCCc--eeccCCH-HHHHHHHHHccC------------
Confidence 3455666666544 4 55444 88887 56677788777877 7665554 334443332111
Q ss_pred eEEEEEecCC
Q 045485 130 RRYALLAENG 139 (164)
Q Consensus 130 p~~~lid~~G 139 (164)
...+|||--|
T Consensus 273 ~d~vliDt~G 282 (282)
T TIGR03499 273 KDLILIDTAG 282 (282)
T ss_pred CCEEEEeCCC
Confidence 2378888654
No 446
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=23.74 E-value=2.3e+02 Score=19.88 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=28.4
Q ss_pred hHHHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCCC
Q 045485 58 GFVEKSAELKSKGVDIVACISVN-DAFVMKAWKENLGIN 95 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~~ 95 (164)
.......++++.||..+. +|.. .++-++++++.+...
T Consensus 48 Di~rIL~dLk~~GVtl~~-ASRt~ap~iA~q~L~~fkvk 85 (144)
T KOG4549|consen 48 DIRRILVDLKKLGVTLIH-ASRTMAPQIASQGLETFKVK 85 (144)
T ss_pred chhHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHHhccC
Confidence 445667788999999777 7776 577788898887654
No 447
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=23.61 E-value=1e+02 Score=17.42 Aligned_cols=16 Identities=13% Similarity=-0.107 Sum_probs=13.3
Q ss_pred EEEEecCCcEEEEEee
Q 045485 132 YALLAENGVVKVLNLE 147 (164)
Q Consensus 132 ~~lid~~G~I~~~~~~ 147 (164)
.|.|++||+|.-.-.+
T Consensus 2 ~~~I~~dG~V~~~v~G 17 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEG 17 (48)
T ss_pred EEEECCCcEEEEEEEe
Confidence 4789999999887775
No 448
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.44 E-value=1.8e+02 Score=20.58 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=14.4
Q ss_pred CCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 47 FTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 47 ~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
+||.|.+- . + -|++.++.+-- +..+
T Consensus 15 t~~~C~~a-k----~---iL~~~~V~~~e-~DVs 39 (147)
T cd03031 15 TFEDCNNV-R----A---ILESFRVKFDE-RDVS 39 (147)
T ss_pred cChhHHHH-H----H---HHHHCCCcEEE-EECC
Confidence 89999863 2 2 23345666555 4443
No 449
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=23.34 E-value=1.8e+02 Score=21.97 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=31.7
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEec---CCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISV---NDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~---d~~~~~~~~~~~~~~~ 95 (164)
+|...+++..+.++|+.|+. ||. ...+...+.+++.|++
T Consensus 117 ip~a~~l~~~~~~~G~~V~~-iT~R~~~~r~~T~~nL~~~G~~ 158 (229)
T PF03767_consen 117 IPGALELYNYARSRGVKVFF-ITGRPESQREATEKNLKKAGFP 158 (229)
T ss_dssp ETTHHHHHHHHHHTTEEEEE-EEEEETTCHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHCCCeEEE-EecCCchhHHHHHHHHHHcCCC
Confidence 78888999999999999999 654 2356667888999886
No 450
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=23.28 E-value=1.7e+02 Score=17.26 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=22.2
Q ss_pred hHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 58 GFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.+.+++..++..|+.... .=+...+++|++..|+.
T Consensus 26 ~L~el~~~L~~~g~~~~~---~~~~~~l~~~lD~~gIt 60 (64)
T PF09494_consen 26 NLEELHAWLKASGIGFDR---KVDPSKLKEWLDSQGIT 60 (64)
T ss_pred cHHHHHHHHHHcCCCccc---eeCHHHHHHHHHHCCce
Confidence 345666666656653322 22456788999988876
No 451
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=23.05 E-value=2e+02 Score=19.90 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=24.9
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
.|.+.+..+.++++|+.+.. +|...... .....+.++.
T Consensus 87 ~~g~~~~l~~l~~~g~~~~i-~Tn~~~~~-~~~~~~~~l~ 124 (183)
T TIGR01509 87 LPGVEPLLEALRARGKKLAL-LTNSPRDH-AVLVQELGLR 124 (183)
T ss_pred CcCHHHHHHHHHHCCCeEEE-EeCCchHH-HHHHHhcCCH
Confidence 46677777888888887555 66666555 4444546664
No 452
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=23.00 E-value=21 Score=16.51 Aligned_cols=20 Identities=10% Similarity=0.315 Sum_probs=14.4
Q ss_pred CCcCCCcCchhhHHHhHHHHH
Q 045485 47 FTPTCSQKHLPGFVEKSAELK 67 (164)
Q Consensus 47 ~cp~C~~~~l~~l~~~~~~~~ 67 (164)
+|..|... ......+..-++
T Consensus 2 ~C~~C~~~-f~s~~~~~~H~~ 21 (25)
T PF12874_consen 2 YCDICNKS-FSSENSLRQHLR 21 (25)
T ss_dssp EETTTTEE-ESSHHHHHHHHT
T ss_pred CCCCCCCC-cCCHHHHHHHHC
Confidence 48999886 777777766553
No 453
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.98 E-value=92 Score=25.33 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=39.7
Q ss_pred ehhhhcCCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC---HHHHHHHH--HHhCCCCceEEEE
Q 045485 28 TVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND---AFVMKAWK--ENLGINDEVLLLS 102 (164)
Q Consensus 28 ~l~d~~~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~---~~~~~~~~--~~~~~~~~~~~l~ 102 (164)
.|.+++.+ -|.|..|..||+|..- ...++...+-.+.+++.+.. ..|- |-....++ +..|.+ ..+++
T Consensus 47 Gl~slLPe---Ni~~i~GPGCPVCVtp-~~~id~aiela~~~~~i~~T--fGDm~RVPgs~~SL~~~ka~G~D--VRiVY 118 (364)
T COG0409 47 GLRSLLPE---NVEFIHGPGCPVCVTP-MGRIDTAIELASSKDVIFCT--FGDMMRVPGSPGSLLDAKAEGAD--VRIVY 118 (364)
T ss_pred hHhhhCcc---ceEEecCCCCCeEeeE-HHHHHHHHHHhCCCCcEEEe--ccceeecCCCCcchhhhhcCCcc--EEEEe
Confidence 34445433 3566678999999987 78887776655466664333 2331 11112233 345666 77766
Q ss_pred eCc
Q 045485 103 DGN 105 (164)
Q Consensus 103 D~~ 105 (164)
.+.
T Consensus 119 S~~ 121 (364)
T COG0409 119 SPM 121 (364)
T ss_pred cHH
Confidence 553
No 454
>PF14435 SUKH-4: SUKH-4 immunity protein
Probab=22.97 E-value=2.8e+02 Score=19.64 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHhCCCCce-EEE-EeCc-----chHHHHhCCcc--ccCCCCCCCCcce-eEEEEEe-cCCcEEEEEeec-
Q 045485 81 DAFVMKAWKENLGINDEV-LLL-SDGN-----GVFTKAIGCEL--DLSDKPMGLGVRS-RRYALLA-ENGVVKVLNLEE- 148 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~l-~D~~-----~~~~~~~gv~~--~~~~~~~~~~~~~-p~~~lid-~~G~I~~~~~~~- 148 (164)
.++..++|+...|++... +++ .+.. ..+...+.... .....+..+|.-. -..+.|| ++|+|.+.....
T Consensus 27 ~~~~~~~fL~~~GlP~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vlG~~~~~~~i~ld~~tG~V~~~~~~~~ 106 (179)
T PF14435_consen 27 TPEETRRFLSEVGLPEDPPPFFRFDPEDDDPLPTLAEAFDEEGLPPDAGHYIVLGSDGSGGSICLDPATGAVYALDPDEE 106 (179)
T ss_pred CCHHHHHHHHhcCCCCCccceeeccCccccccCcHHHHhccccCccccCccEEEEEcCCCCeEEEECCCCeEEEecCCcc
Confidence 467889999999998422 222 2322 45555544311 1011111112211 3478888 789998877654
Q ss_pred -CCceeecCHHHHH
Q 045485 149 -GGAFTFSGAEDML 161 (164)
Q Consensus 149 -~~~~~~~~~~~~l 161 (164)
...+-.++++..+
T Consensus 107 ~~~~~vNssl~~f~ 120 (179)
T PF14435_consen 107 PEPVFVNSSLSSFA 120 (179)
T ss_pred ccceeccCCHHHHH
Confidence 1223344555544
No 455
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=22.96 E-value=2.3e+02 Score=22.09 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=33.5
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHH---HHHHHHHHhCCCCceEEEEeC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAF---VMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~---~~~~~~~~~~~~~~~~~l~D~ 104 (164)
..-++.+..+|.++|+.+|- |..+.-. .+.+.++..... |.++.|.
T Consensus 66 SSlVkall~~y~~~GLRlIe-v~k~~L~~l~~l~~~l~~~~~k--FIlf~DD 114 (249)
T PF05673_consen 66 SSLVKALLNEYADQGLRLIE-VSKEDLGDLPELLDLLRDRPYK--FILFCDD 114 (249)
T ss_pred HHHHHHHHHHHhhcCceEEE-ECHHHhccHHHHHHHHhcCCCC--EEEEecC
Confidence 46677889999999999999 7776533 344444445556 9999984
No 456
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.93 E-value=76 Score=16.63 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHhCCC
Q 045485 81 DAFVMKAWKENLGIN 95 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (164)
+..+++.|++.+|+.
T Consensus 5 s~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIP 19 (38)
T ss_pred CHHHHHHHHHHcCCC
Confidence 357789999999987
No 457
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=22.89 E-value=1e+02 Score=27.09 Aligned_cols=42 Identities=19% Similarity=0.386 Sum_probs=31.8
Q ss_pred HHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchH
Q 045485 64 AELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVF 108 (164)
Q Consensus 64 ~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 108 (164)
-.+...|+.||. +....-.....|.+.++++ +.+++|.|.+-
T Consensus 420 ~~L~~~gi~VI~-~~gs~~k~f~kf~~~~gI~--~~vitD~D~~g 461 (581)
T COG3593 420 IDLEKEGIIVIE-FAGSGLKPFIKFAEAMGIR--VHVITDGDEAG 461 (581)
T ss_pred cccccCcEEEEe-ecccCcHHHHHHhhccCce--EEEEecCCccc
Confidence 345567888888 6666666666699999998 99999987544
No 458
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.82 E-value=1.3e+02 Score=23.31 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=23.3
Q ss_pred HHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 60 VEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 60 ~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
..+..+|.+.|..|++ -+.. .+.+.+...+.|+.
T Consensus 22 ~ala~ef~~~G~~V~A-taR~-~e~M~~L~~~~gl~ 55 (289)
T KOG1209|consen 22 YALAKEFARNGYLVYA-TARR-LEPMAQLAIQFGLK 55 (289)
T ss_pred HHHHHHHHhCCeEEEE-Eccc-cchHhhHHHhhCCe
Confidence 3788899999999998 4433 34555566566653
No 459
>PRK10853 putative reductase; Provisional
Probab=22.65 E-value=79 Score=21.32 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=36.6
Q ss_pred EEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEe--cC--CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCc
Q 045485 41 FAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACIS--VN--DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCE 115 (164)
Q Consensus 41 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is--~d--~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (164)
.+|.-..|..|++. +. -+.+.|+.+-. +. .+ +.+++.+|+++.|+. - +....+..++.++..
T Consensus 3 ~iy~~~~C~t~rkA-~~-------~L~~~~i~~~~-~d~~k~p~s~~eL~~~l~~~g~~--~--l~n~~~~~~r~L~~~ 68 (118)
T PRK10853 3 TLYGIKNCDTIKKA-RR-------WLEAQGIDYRF-HDYRVDGLDSELLQGFIDELGWE--A--LLNTRGTTWRKLDET 68 (118)
T ss_pred EEEcCCCCHHHHHH-HH-------HHHHcCCCcEE-eehccCCcCHHHHHHHHHHcCHH--H--HHhcCCchHHhCCHh
Confidence 44545567777764 32 23345666555 32 22 678899999988865 2 334456666665543
No 460
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=22.65 E-value=20 Score=22.13 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=23.1
Q ss_pred EecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC
Q 045485 42 AVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN 80 (164)
Q Consensus 42 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d 80 (164)
|.-|.-||-|... +-..-+.+.+++.+-+|+.+
T Consensus 5 FIAGa~CP~C~~~------D~i~~~~e~~ve~vECV~CG 37 (71)
T PF09526_consen 5 FIAGAVCPKCQAM------DTIMMWRENGVEYVECVECG 37 (71)
T ss_pred EecCccCCCCcCc------cEEEEEEeCCceEEEecCCC
Confidence 6678889999974 22233456778888887765
No 461
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=22.60 E-value=1.5e+02 Score=22.24 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=29.3
Q ss_pred EEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecC---------------CHHHHHHHHHHhCCC
Q 045485 39 ILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVN---------------DAFVMKAWKENLGIN 95 (164)
Q Consensus 39 vl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d---------------~~~~~~~~~~~~~~~ 95 (164)
||-.|.+-.|..|.-- =..|.++.++ .+|-.++ ..+| -.+.+++|.+..+..
T Consensus 1 vVELFTSQGCsSCPpA-D~~L~~l~~~---~~Vi~La-fHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~ 67 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPA-DRLLSELAAR---PDVIALA-FHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLR 67 (202)
T ss_dssp EEEEEE-TT-TT-HHH-HHHHHHHHHH---TSSEEEE-EE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S
T ss_pred CeeEecCCCCCCCcHH-HHHHHHhhcC---CCEEEEE-ecCCcccCCCCCCccCChhHHHHHHHHHHHhCCC
Confidence 3556668899999874 5666666554 4665555 5554 145567788877653
No 462
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=22.59 E-value=1.9e+02 Score=20.57 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=17.4
Q ss_pred EEEEecCCcEEEEEeecCCceeecCHHHH
Q 045485 132 YALLAENGVVKVLNLEEGGAFTFSGAEDM 160 (164)
Q Consensus 132 ~~lid~~G~I~~~~~~~~~~~~~~~~~~~ 160 (164)
.+++|..|+|.....++...+-..++|+.
T Consensus 111 lvimD~kGRiLtaslSPs~~iHk~~ie~~ 139 (154)
T PF11576_consen 111 LVIMDSKGRILTASLSPSHVIHKKSIEDA 139 (154)
T ss_dssp EEEEETTS-EEEEEEE--TTTS---HHHH
T ss_pred EEEEcCCCcEEeeccCchhhhccccHHHH
Confidence 67889999999999887655555555543
No 463
>PHA02762 hypothetical protein; Provisional
Probab=22.56 E-value=1.2e+02 Score=17.66 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.8
Q ss_pred EEEEecCCcEEEEEeec
Q 045485 132 YALLAENGVVKVLNLEE 148 (164)
Q Consensus 132 ~~lid~~G~I~~~~~~~ 148 (164)
++=||.+|+|.|+.+.+
T Consensus 31 tigide~g~iayisiep 47 (62)
T PHA02762 31 TIGIDENDKISYISIEP 47 (62)
T ss_pred EEeECCCCcEEEEEecc
Confidence 67899999999999864
No 464
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.50 E-value=1.3e+02 Score=19.72 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=17.4
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
.+++.+..+..+++|+.+|+ ++.+.
T Consensus 59 t~e~~~~~~~a~~~g~~vi~-iT~~~ 83 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVA-ITNVV 83 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEE-EECCC
Confidence 56667777777778888887 65543
No 465
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=22.36 E-value=2.2e+02 Score=20.15 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=28.7
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCC---------------HHHHHHHHHHhCCCCce
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVND---------------AFVMKAWKENLGINDEV 98 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~---------------~~~~~~~~~~~~~~~~~ 98 (164)
.|.+.+..+.++++|..++. +|..+ ...+.+.++.+|+. |
T Consensus 31 ~pgv~e~L~~L~~~g~~l~I-vSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--f 85 (161)
T TIGR01261 31 EKGVIPALLKLKKAGYKFVM-VTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--F 85 (161)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--e
Confidence 46677788888889988665 77642 23456678888888 7
No 466
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=22.33 E-value=3.4e+02 Score=22.83 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=56.9
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecC----CHHHHHHHHHHhCCCCceEEE----EeCc------------chHHHHhCCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVN----DAFVMKAWKENLGINDEVLLL----SDGN------------GVFTKAIGCE 115 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d----~~~~~~~~~~~~~~~~~~~~l----~D~~------------~~~~~~~gv~ 115 (164)
-|.+-.....|+..|+.++. |..| +++++.+.++++... +.++ ..|. -++++++++.
T Consensus 186 ~PtY~~~~~~~~~~g~~~~~-vp~d~~G~~~e~le~~~~~~~~k--~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~ 262 (459)
T COG1167 186 DPTYPGALQALEALGARVIP-VPVDEDGIDPEALEEALAQWKPK--AVYVTPTFQNPTGVTMSLERRKALLALAEKYDVL 262 (459)
T ss_pred CCCcHHHHHHHHHcCCcEEe-cCCCCCCCCHHHHHHHHhhcCCc--EEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCe
Confidence 57777888888889999999 7776 588888887776444 2222 2222 2457888876
Q ss_pred cccCCCCCCC---CcceeEEEEEecCCcEEEEEe
Q 045485 116 LDLSDKPMGL---GVRSRRYALLAENGVVKVLNL 146 (164)
Q Consensus 116 ~~~~~~~~~~---~~~~p~~~lid~~G~I~~~~~ 146 (164)
...+|-+..+ +.|.|...-.|++|+|.|+..
T Consensus 263 IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gS 296 (459)
T COG1167 263 IIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGS 296 (459)
T ss_pred EEeeCcchhhhcCCCCCCChHhhCCCCCEEEEee
Confidence 5433322111 234445778888999988763
No 467
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=22.29 E-value=2.3e+02 Score=21.16 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhCCCCceEEEEeC
Q 045485 82 AFVMKAWKENLGINDEVLLLSDG 104 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~D~ 104 (164)
.+++.+.+++++.+ +.++..-
T Consensus 67 ~~~~~~~l~~~~~D--liv~agy 87 (207)
T PLN02331 67 PDELVDALRGAGVD--FVLLAGY 87 (207)
T ss_pred hHHHHHHHHhcCCC--EEEEeCc
Confidence 34555667777777 7666653
No 468
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.28 E-value=39 Score=25.08 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=29.8
Q ss_pred CCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcc-hHHHHhCC
Q 045485 46 AFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNG-VFTKAIGC 114 (164)
Q Consensus 46 ~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~-~~~~~~gv 114 (164)
.+||+|.+- .+...++.-.+++.. +-.|+.+.-.+.+-... .|++.-.++ .+.+.+.+
T Consensus 7 dHCPfcvra------rmi~Gl~nipve~~v-L~nDDe~Tp~rmiG~Kq----VPiL~Kedg~~m~ESlDI 65 (215)
T COG2999 7 DHCPFCVRA------RMIFGLKNIPVELHV-LLNDDEETPIRMIGQKQ----VPILQKEDGRAMPESLDI 65 (215)
T ss_pred ccChHHHHH------HHHhhccCCChhhhe-eccCcccChhhhhcccc----cceEEccccccchhhhHH
Confidence 689999983 455555444455454 55565444444432222 455554332 33344443
No 469
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=22.26 E-value=1.4e+02 Score=22.26 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=42.0
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEe--------Cc----chHHHHhCCc
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGINDEVLLLSD--------GN----GVFTKAIGCE 115 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D--------~~----~~~~~~~gv~ 115 (164)
+|.+.++.+.++++|+.+.. .|..+.......++..|+...|..+.+ |+ ...++++|+.
T Consensus 88 ~pGv~~~l~~L~~~~i~~av-aS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~ 158 (221)
T COG0637 88 IPGVVELLEQLKARGIPLAV-ASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVD 158 (221)
T ss_pred CccHHHHHHHHHhcCCcEEE-ecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCC
Confidence 78889999999999876444 677777778888888887645655443 22 3446778765
No 470
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=22.24 E-value=46 Score=27.18 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=9.4
Q ss_pred EEEEecCCCCcCCCcC
Q 045485 39 ILFAVPGAFTPTCSQK 54 (164)
Q Consensus 39 vl~f~~~~~cp~C~~~ 54 (164)
-.++| +||.|+.+
T Consensus 365 ~~l~W---~CPsC~~W 377 (389)
T COG2956 365 HTLYW---HCPSCRAW 377 (389)
T ss_pred eeeee---eCCCcccc
Confidence 34555 69999985
No 471
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=22.17 E-value=1.3e+02 Score=19.64 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=31.7
Q ss_pred HHHHhCCCcEEEEEec-C---CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhC
Q 045485 64 AELKSKGVDIVACISV-N---DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIG 113 (164)
Q Consensus 64 ~~~~~~~v~vi~~is~-d---~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (164)
+-+++.|+.+-. +.. . +.+++.+|++..|.+ +.-+....+...+.++
T Consensus 14 ~~L~~~gi~~~~-~d~~k~p~s~~el~~~l~~~~~~--~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 14 KWLEENGIEYEF-IDYKKEPLSREELRELLSKLGNG--PDDLINTRSKTYKELG 64 (110)
T ss_dssp HHHHHTT--EEE-EETTTS---HHHHHHHHHHHTSS--GGGGB-TTSHHHHHTT
T ss_pred HHHHHcCCCeEe-ehhhhCCCCHHHHHHHHHHhccc--HHHHhcCccchHhhhh
Confidence 445567877666 433 2 578899999999977 6556677888888888
No 472
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=22.16 E-value=3.4e+02 Score=21.20 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=46.5
Q ss_pred eecCCCceeeeehhhhc-----CCCcEEEEEecCCCCcCCCcCchhhHHHhHHHHHhCCCcEEEEEecCC---HHHHHHH
Q 045485 17 YFDSAGELQTITVSDLT-----SNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVND---AFVMKAW 88 (164)
Q Consensus 17 ~~~~~g~~~~~~l~d~~-----~g~~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~v~vi~~is~d~---~~~~~~~ 88 (164)
..|+|++. ++-+.+. .+++.==-.| ..|.--.....+|...++.+.+.++|+.++. +|.-+ .+...++
T Consensus 79 V~DIDeTv--Ldns~y~~~~~~~~~~~~~~~w-~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~i-VTnR~~~~~~~T~~~ 154 (266)
T TIGR01533 79 VLDLDETV--LDNSPYQGYQVLNNKPFDPETW-DKWVQAAQAKPVAGALDFLNYANSKGVKIFY-VSNRSEKEKAATLKN 154 (266)
T ss_pred EEeCcccc--ccChHHHHHHhcCCCcCCHHHH-HHHHHcCCCCcCccHHHHHHHHHHCCCeEEE-EeCCCcchHHHHHHH
Confidence 46888876 5555441 1222000022 3445444444468888999999999998777 76643 4556688
Q ss_pred HHHhCCC
Q 045485 89 KENLGIN 95 (164)
Q Consensus 89 ~~~~~~~ 95 (164)
++++|++
T Consensus 155 Lkk~Gi~ 161 (266)
T TIGR01533 155 LKRFGFP 161 (266)
T ss_pred HHHcCcC
Confidence 8889986
No 473
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=22.02 E-value=2.2e+02 Score=17.96 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=31.8
Q ss_pred HhHHHHHhCCCcEEEEEecCCHHH----HHHHHHHhCCCCceEEEEeCcchHHHHhCCcc
Q 045485 61 EKSAELKSKGVDIVACISVNDAFV----MKAWKENLGINDEVLLLSDGNGVFTKAIGCEL 116 (164)
Q Consensus 61 ~~~~~~~~~~v~vi~~is~d~~~~----~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 116 (164)
+....++...+..|. ++.|..+. +..+.+.++++ + +......++.+..|+..
T Consensus 15 ~vlkaIk~gkakLVi-iA~Da~~~~~k~i~~~c~~~~Vp--v-~~~~t~~eLG~A~G~~v 70 (82)
T PRK13601 15 QTLKAITNCNVLQVY-IAKDAEEHVTKKIKELCEEKSIK--I-VYIDTMKELGVMCGIDV 70 (82)
T ss_pred HHHHHHHcCCeeEEE-EeCCCCHHHHHHHHHHHHhCCCC--E-EEeCCHHHHHHHHCCcc
Confidence 444555545566666 77774333 33445667777 7 34445678888888853
No 474
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=21.93 E-value=3.7e+02 Score=20.74 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=18.0
Q ss_pred eehhhhcCCCcEEEEEecC--CCCcCCCcCchhh
Q 045485 27 ITVSDLTSNKKAILFAVPG--AFTPTCSQKHLPG 58 (164)
Q Consensus 27 ~~l~d~~~g~~vvl~f~~~--~~cp~C~~~~l~~ 58 (164)
.++.|+ .|+..+.+|+.| --|+.|++.++.+
T Consensus 27 ~~~~d~-~g~~~~~vf~~GCnlrC~~C~N~~~~~ 59 (260)
T COG1180 27 KPLVDG-PGSIRLSVFLQGCNLRCPYCQNPEISQ 59 (260)
T ss_pred cCCcCC-CCcEEEEEEeCCCCCCCCCCCChhHhc
Confidence 677788 563334444422 2388898765444
No 475
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 2, which has a core 3-layer alpha/beta/alpha structure. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 1E3H_A 1E3P_A 2NN6_E 2WNR_A 3U1K_B 2BA0_H 2BA1_H 3M85_G 3M7N_H 3H1C_K ....
Probab=21.77 E-value=1.4e+02 Score=17.44 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=20.9
Q ss_pred EEEEEecCCcEEEEEeecCCc-eeecCHHHHHh
Q 045485 131 RYALLAENGVVKVLNLEEGGA-FTFSGAEDMLK 162 (164)
Q Consensus 131 ~~~lid~~G~I~~~~~~~~~~-~~~~~~~~~l~ 162 (164)
-++.++++|++.......+.. ++.+.+.++++
T Consensus 31 l~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~i~ 63 (68)
T PF03725_consen 31 LTLAVDGTGNICTLQKSGGGSELSEDQLEEAIE 63 (68)
T ss_dssp EEEEEETTSSEEEEEEEEESSEEEHHHHHHHHH
T ss_pred EEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHH
Confidence 378899999885544443333 77767777665
No 476
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=21.72 E-value=2e+02 Score=26.70 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=23.3
Q ss_pred hHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 58 GFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
...+..+++++.|++++. ++.|.+....+..++.|+.
T Consensus 554 ~a~~aI~~l~~aGI~v~m-iTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 554 SAAPAIAALRENGVAVKV-LTGDNPIVTAKICREVGLE 590 (903)
T ss_pred HHHHHHHHHHHCCCeEEE-ECCCCHHHHHHHHHHcCCC
Confidence 334455566666776666 6777766666666666664
No 477
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=21.70 E-value=1.7e+02 Score=23.92 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=8.9
Q ss_pred EEEEecCCcE
Q 045485 132 YALLAENGVV 141 (164)
Q Consensus 132 ~~lid~~G~I 141 (164)
+.+||++|+|
T Consensus 382 S~vidp~G~i 391 (391)
T TIGR00546 382 SAVIDPRGRT 391 (391)
T ss_pred eEEECCCCCC
Confidence 7999999986
No 478
>PLN02367 lactoylglutathione lyase
Probab=21.59 E-value=3.8e+02 Score=20.59 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=37.7
Q ss_pred CCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecCCcEEEEEee
Q 045485 69 KGVDIVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 147 (164)
Q Consensus 69 ~~v~vi~~is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~G~I~~~~~~ 147 (164)
.|..-|+ +..++.++..+.++..|.. +. ..+.. |- . .+-.|+-|+||.++.+.-.
T Consensus 168 ~G~~HIa-f~VdDVdaa~erL~a~Gv~--~v--~~P~~------g~-----------~--~riaFIkDPDGn~IEL~e~ 222 (233)
T PLN02367 168 RGFGHIG-ITVDDVYKACERFEELGVE--FV--KKPND------GK-----------M--KGIAFIKDPDGYWIEIFDL 222 (233)
T ss_pred CCceEEE-EEcCCHHHHHHHHHHCCCE--EE--eCCcc------CC-----------c--eEEEEEECCCCCEEEEEec
Confidence 4677788 8889988888888888877 43 23320 10 0 1347889999998776653
No 479
>PRK03094 hypothetical protein; Provisional
Probab=21.56 E-value=2.1e+02 Score=18.11 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=12.0
Q ss_pred hHHHhHHHHHhCCCcEEE
Q 045485 58 GFVEKSAELKSKGVDIVA 75 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~ 75 (164)
.|..+.+.|+++|.+|+-
T Consensus 9 ~Ls~i~~~L~~~GYeVv~ 26 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQ 26 (80)
T ss_pred CcHHHHHHHHHCCCEEEe
Confidence 455566677777777666
No 480
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=21.53 E-value=3e+02 Score=21.01 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=28.5
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+...+..++++++|+.++. .|.-+...+...+++.++.
T Consensus 24 ~~~~~ai~~l~~~Gi~~~i-aTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIP-CTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred HHHHHHHHHHHHCCCEEEE-EcCCCHHHHHHHHHHcCCC
Confidence 3344556777788998777 7888888888888888875
No 481
>PF05379 Peptidase_C23: Carlavirus endopeptidase ; InterPro: IPR008041 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C23 (clan CA). The type example is Carlavirus (apple stem pitting virus) endopeptidase, this thought to play a role in the post-translational cleavage of the high molecular weight primary translation products of the virus.; GO: 0003968 RNA-directed RNA polymerase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=21.53 E-value=1.9e+02 Score=18.56 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=42.6
Q ss_pred HHhHHHHHhCCCcEEEEEecC-CHHHHHHHHHHhCCCCceEEEEeCcchHHHHhCCccccCCCCCCCCcceeEEEEEecC
Q 045485 60 VEKSAELKSKGVDIVACISVN-DAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAEN 138 (164)
Q Consensus 60 ~~~~~~~~~~~v~vi~~is~d-~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~p~~~lid~~ 138 (164)
..+++.+..+...|+.|++.. ..+-......-.|++ ... =..+.+-|+|.... .-...++++|+.
T Consensus 8 ~AiA~aL~R~~~dVl~Vl~~~~~~~~~~~l~~G~Gl~--l~~----le~~f~~F~I~A~v--------~~~g~~~~lN~~ 73 (89)
T PF05379_consen 8 RAIAEALGRREQDVLAVLSRKCGEELLEELWSGEGLD--LED----LEELFELFDICAHV--------NFGGETFVLNEE 73 (89)
T ss_pred HHHHHHhCCCHHHHHHHHHhccCHHHHHHHHcCCCcC--HHH----HHHHHHHcCeEEEE--------EECCEEEEECCC
Confidence 455555554555555544432 333334444445655 211 14566777776431 122558999999
Q ss_pred CcEEEEEeecC
Q 045485 139 GVVKVLNLEEG 149 (164)
Q Consensus 139 G~I~~~~~~~~ 149 (164)
|+|...+.-.+
T Consensus 74 G~i~~~F~l~~ 84 (89)
T PF05379_consen 74 GRIKGSFRLED 84 (89)
T ss_pred CcEEEEEEEeC
Confidence 99988776543
No 482
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=21.42 E-value=70 Score=18.74 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=18.1
Q ss_pred EecCCHHHHHHHHHHhCCCCceEEEE
Q 045485 77 ISVNDAFVMKAWKENLGINDEVLLLS 102 (164)
Q Consensus 77 is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (164)
++.++++++.+|++...-. ||.-.
T Consensus 15 ~~L~t~eeI~~W~eERrk~--~PT~~ 38 (56)
T PF10453_consen 15 IKLQTPEEIAKWIEERRKN--YPTKA 38 (56)
T ss_pred eecCCHHHHHHHHHHHHHc--CCcHH
Confidence 3457999999999887666 76543
No 483
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=21.35 E-value=3e+02 Score=19.33 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=32.1
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHH---HHHHHHH-----hCCCCceEEEEeCcchH
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFV---MKAWKEN-----LGINDEVLLLSDGNGVF 108 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~---~~~~~~~-----~~~~~~~~~l~D~~~~~ 108 (164)
+...++..+++++|..++- +|.-+... .++|+++ ++++ .-+++.-+.+.+
T Consensus 30 ~~~~~a~~~l~~~G~~ivy-~TGRp~~~~~~t~~~l~~~~~~~~~lp-~g~li~~~g~~~ 87 (157)
T smart00775 30 PGVAKLYRDIQNNGYKILY-LTARPIGQADRTRSYLSQIKQDGHNLP-HGPVLLSPDRLF 87 (157)
T ss_pred HHHHHHHHHHHHcCCeEEE-EcCCcHHHHHHHHHHHHHhhhccccCC-CceEEEcCCcch
Confidence 6677888888989998777 66554333 3588888 4454 235555544433
No 484
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=21.26 E-value=2.3e+02 Score=23.66 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=21.6
Q ss_pred CcCCCcCch-----hh-HHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHh
Q 045485 48 TPTCSQKHL-----PG-FVEKSAELKSKGVDIVACISVNDAFVMKAWKENL 92 (164)
Q Consensus 48 cp~C~~~~l-----~~-l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~ 92 (164)
||.|-.+ + .. +..+.+..++.|..|.. ||.+.+ +-.++++.+
T Consensus 349 c~~~~~~-~~~~~~~~~ve~L~e~a~~~Ga~V~i-iS~~~e-eG~ql~~~f 396 (409)
T TIGR00108 349 CPACGQE-MDVVEERDLIEWLSELAENFGAKLEF-ISTESE-EGAQLLTAF 396 (409)
T ss_pred CcccCcc-ccchhhhhHHHHHHHHHHHcCCEEEE-ECCCCh-hHHHHHHhC
Confidence 6666544 3 12 24455556666776655 655553 223444444
No 485
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=21.24 E-value=2e+02 Score=26.68 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=28.7
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+...+..+++++.|+.++. ++.|.+....+..++.|+.
T Consensus 553 ~~a~~aI~~l~~aGI~v~m-iTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 553 ETTAPALKALKASGVTVKI-LTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred hhHHHHHHHHHHCCCEEEE-EcCCCHHHHHHHHHHcCCC
Confidence 3445566777778888777 8888888888888888875
No 486
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.15 E-value=81 Score=20.83 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=18.3
Q ss_pred hhhHHHhHHHHHhCCCcEEEEEecCC
Q 045485 56 LPGFVEKSAELKSKGVDIVACISVND 81 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~~is~d~ 81 (164)
.+++.+..+..+++|+.+|+ ++.+.
T Consensus 60 t~~~~~~~~~a~~~g~~vi~-iT~~~ 84 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIA-ITGNP 84 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEE-EeCCC
Confidence 56677777777888888888 66554
No 487
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=21.07 E-value=3.2e+02 Score=20.04 Aligned_cols=8 Identities=25% Similarity=0.268 Sum_probs=5.1
Q ss_pred eEEEEeCc
Q 045485 98 VLLLSDGN 105 (164)
Q Consensus 98 ~~~l~D~~ 105 (164)
+.++.|.|
T Consensus 74 ~vl~lDaD 81 (229)
T cd02511 74 WVLSLDAD 81 (229)
T ss_pred EEEEEeCC
Confidence 66666665
No 488
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.03 E-value=34 Score=19.55 Aligned_cols=12 Identities=25% Similarity=0.456 Sum_probs=5.7
Q ss_pred CCcCCCcCchhhH
Q 045485 47 FTPTCSQKHLPGF 59 (164)
Q Consensus 47 ~cp~C~~~~l~~l 59 (164)
.||.|.+. +..=
T Consensus 22 ~CPlC~r~-l~~e 33 (54)
T PF04423_consen 22 CCPLCGRP-LDEE 33 (54)
T ss_dssp E-TTT--E-E-HH
T ss_pred cCCCCCCC-CCHH
Confidence 59999886 6543
No 489
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=20.93 E-value=2.1e+02 Score=26.43 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=27.0
Q ss_pred hHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 58 GFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 58 ~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
...+..+++++.|+.++. ++.|.+...++..++.|+.
T Consensus 519 ~~~~aI~~l~~aGI~vvm-iTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 519 STKEAIAALFKNGINVKV-LTGDNEIVTARICQEVGID 555 (867)
T ss_pred hHHHHHHHHHHCCCEEEE-EcCCCHHHHHHHHHHcCCC
Confidence 445556677777888777 7888887777778877774
No 490
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=20.74 E-value=3e+02 Score=21.08 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=44.6
Q ss_pred hhhHHHhHHHHHhCCCcEEE------EEecC-CHHHHHHHHH--HhCCCCceEEEEeCc----chHHHHhCCccccCCCC
Q 045485 56 LPGFVEKSAELKSKGVDIVA------CISVN-DAFVMKAWKE--NLGINDEVLLLSDGN----GVFTKAIGCELDLSDKP 122 (164)
Q Consensus 56 l~~l~~~~~~~~~~~v~vi~------~is~d-~~~~~~~~~~--~~~~~~~~~~l~D~~----~~~~~~~gv~~~~~~~~ 122 (164)
...++.+...+.+.|+..-- -+-.+ ...+.-+++. ..+.+ +.++||.+ ..+-+.+|+... .
T Consensus 43 t~~m~~vl~~L~~~gvt~~~I~~~l~~ip~~pgm~~~l~~l~~~~~~~~--~~IiSDaNs~fI~~iL~~~gl~~~----f 116 (234)
T PF06888_consen 43 TEYMDRVLQLLHEQGVTPEDIRDALRSIPIDPGMKELLRFLAKNQRGFD--LIIISDANSFFIETILEHHGLRDC----F 116 (234)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCccHHHHHHHHHhcCCCce--EEEEeCCcHhHHHHHHHhCCCccc----c
Confidence 66777777778777744211 01112 2344555663 35777 99999987 455577776521 0
Q ss_pred CCCCcceeEEEEEecCCcEEE
Q 045485 123 MGLGVRSRRYALLAENGVVKV 143 (164)
Q Consensus 123 ~~~~~~~p~~~lid~~G~I~~ 143 (164)
.. -+.+|+ .+|.+|+++-
T Consensus 117 ~~-I~TNpa--~~~~~G~l~v 134 (234)
T PF06888_consen 117 SE-IFTNPA--CFDADGRLRV 134 (234)
T ss_pred ce-EEeCCc--eecCCceEEE
Confidence 01 133443 5677887653
No 491
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=20.36 E-value=2.2e+02 Score=26.31 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=31.7
Q ss_pred hhHHHhHHHHHhCCCcEEEEEecCCHHHHHHHHHHhCCC
Q 045485 57 PGFVEKSAELKSKGVDIVACISVNDAFVMKAWKENLGIN 95 (164)
Q Consensus 57 ~~l~~~~~~~~~~~v~vi~~is~d~~~~~~~~~~~~~~~ 95 (164)
+...+..+++++.|+.++. ++.|.++...+..++.|+.
T Consensus 531 ~~~~~~i~~l~~~Gi~v~m-iTGD~~~tA~~ia~~~Gi~ 568 (884)
T TIGR01522 531 PGVKEAVTTLITGGVRIIM-ITGDSQETAVSIARRLGMP 568 (884)
T ss_pred hHHHHHHHHHHHCCCeEEE-ECCCCHHHHHHHHHHcCCC
Confidence 5566777888889998777 8999999999999998875
No 492
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=20.23 E-value=57 Score=27.57 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=18.0
Q ss_pred CCcCCCcCchhhHHHhHHHHH
Q 045485 47 FTPTCSQKHLPGFVEKSAELK 67 (164)
Q Consensus 47 ~cp~C~~~~l~~l~~~~~~~~ 67 (164)
-||.|... ++.|..+...+.
T Consensus 17 lCPiC~~d-l~~~~~L~~H~d 36 (505)
T KOG1842|consen 17 LCPICLLD-LPNLSALNDHLD 36 (505)
T ss_pred cCchHhhh-hhhHHHHHHHHh
Confidence 49999998 999999988875
No 493
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.20 E-value=1.9e+02 Score=17.14 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHhCCCCceEEEEe
Q 045485 81 DAFVMKAWKENLGINDEVLLLSD 103 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~D 103 (164)
+.+.+.+|+++.|.. +....+
T Consensus 38 s~~di~~~~~~~g~~--~~~~~~ 58 (69)
T cd03423 38 TTRDIPKFCTFLGHE--LLAQET 58 (69)
T ss_pred hHHHHHHHHHHcCCE--EEEEEE
Confidence 467789999999877 655444
Done!