BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045487
(729 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 176/587 (29%), Positives = 254/587 (43%), Gaps = 76/587 (12%)
Query: 65 ITCDIYGNRVTSLTIPDLG---LTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTK 121
I+ D+ +R +L D+ + IP +LG+ S+LQ L +S N SG R I T+
Sbjct: 190 ISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 122 LKELRLRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDFSNNSL 181
LK L + N+ G IP P + +L +S + N
Sbjct: 249 LKLLNISSNQFVGPIP-----------------------PLPLKSLQYLS----LAENKF 281
Query: 182 TGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRD-LGN 240
TG PD + L GL +S N F G +P C L S +LS N F+G LP D L
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 241 LTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTN 300
+ LK L L FN GE+PE S+ NLS+ L LD ++
Sbjct: 342 MRGLKVLDLSFNEFSGELPE------------------------SLTNLSASLLTLDLSS 377
Query: 301 NSLTGSFPDDTCHGLPR--LKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPR 358
N+ +G + C P+ L+ LY+ N F G IP L +C +L ++ LSFN +G IP
Sbjct: 378 NNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 359 DLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILS 418
LG+ +KL+ L L LN L GEIPQE+ ++ LE L +D ++L G +P + N + L +S
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 419 LFNNTFSGNLPSSKXXXXXXXXXXXXXXXXXFSGSIPSFCFNASKLYALELGYNSFSGLI 478
L NN +G +P K FSG+IP+ + L L+L N F+G I
Sbjct: 497 LSNNRLTGEIP--KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 479 PEAXXXXXXXXXX---------------XXXXXXXTSSTSELMSFFSALVNCKSLKVIVL 523
P A + E S +N S +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 524 SENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSXXXXXXXXXXXXXXXXXXPM 583
+ + G S +++ S+ + M + G IPKEIGS P
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 584 TLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIP 630
+G L+ L L L +NK +G IPQ + L E+D++ N LSG IP
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 164/573 (28%), Positives = 241/573 (42%), Gaps = 97/573 (16%)
Query: 174 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGR 233
LD S N L+G F + LK L +S NQF GPIP K L SL+ N+FTG
Sbjct: 228 LDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE 284
Query: 234 LPRDL-GNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSM 292
+P L G L L L N+ G +P G+ + LE L L+SN +G +P
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 293 LTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKD----LSTVSLS 348
L LD + N +G P+ + L L +S N F GPI NL C++ L + L
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQ 402
Query: 349 FNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTI 408
N FTG+IP L N ++L SLHL N L G IP +G+L L L + + L G +P +
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 409 LNISTLKILSLFNNTFSGNLPSSKXXXXXXXXXXXXXXXXXFSGSIPSFCFNASKLYALE 468
+ + TL+ L L N +G +PS +G IP + L L+
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 469 LGYNSFSGLIPEAXXXXXXXXXXXXXXXXXTSSTSELMSFFSALVNCKSLKVIVLSENPL 528
L NSFSG IP + L +C+SL + L+ N
Sbjct: 521 LSNNSFSGNIP------------------------------AELGDCRSLIWLDLNTNLF 550
Query: 529 DGVLPSSIGNHSVSVE------EIYMY--------KCNIHGRIPKEIGSXXXXXXXXXXX 574
+G +P+++ S + + Y+Y +C+ G + + G
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG------------ 598
Query: 575 XXXXXXXPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLG 634
L RL + + + G F + + +DM+ N LSG IP +G
Sbjct: 599 -----IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 635 DXXXXXXXXXXXXXXTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSW 694
+P F + N ++GS+P E+G+L+ + +DLS
Sbjct: 654 S-----------------MPYLFI-------LNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 695 NRLSGNIPSTIVGLKNLQRLSLKHNKLQGPIPE 727
N+L G IP + L L + L +N L GPIPE
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 200/747 (26%), Positives = 307/747 (41%), Gaps = 81/747 (10%)
Query: 17 SVIVAAAANISRDQDALLSVKAHIINDNPRNILAQNWTSNTSVCSWMGITCDIYGNRVTS 76
S + + ++ R+ L+S K + + N L +W+SN + C++ G+TC ++VTS
Sbjct: 1 SFQASPSQSLYREIHQLISFKDVLPDKN----LLPDWSSNKNPCTFDGVTC--RDDKVTS 54
Query: 77 LTIPDLGLT---GTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQ 133
+ + L + S L +L+ L++L LS++ +G++ L L L N L
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLS 113
Query: 134 GEIPXXXXXXXXXXXXXXXXXXXTGTIPASI---FNLSSISTGLDFSNNSLTGSFPDD-- 188
G + T P + L+S+ LD S NS++G+
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV-LDLSANSISGANVVGWV 172
Query: 189 MCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLY 248
+ +G LK L +S N+ G + ++ C L +S N F+ +P LG+ + L+ L
Sbjct: 173 LSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229
Query: 249 LGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFP 308
+ N L G+ + EL++L ++SN G IP L S L L N TG P
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKS-LQYLSLAENKFTGEIP 286
Query: 309 DDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRD-LGNSTKLK 367
D L GL +S N F G +P C L +++LS N F+G +P D L LK
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 368 SLHLGLNNLIGEIPQEIGNLR-NLEILGIDQSNLVG-FVPDTILN-ISTLKILSLFNNTF 424
L L N GE+P+ + NL +L L + +N G +P+ N +TL+ L L NN F
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 425 SGNLPSSKXXXXXXXXXXXXXXXXXFSGSIPSFCFNASKLYALELGYNSFSGLIPEAXXX 484
+G +P + SG+IPS + SKL L+L N G IP+
Sbjct: 407 TGKIPPT--LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ---- 460
Query: 485 XXXXXXXXXXXXXXTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVE 544
ELM K+L+ ++L N L G +PS + N ++
Sbjct: 461 -------------------ELMYV-------KTLETLILDFNDLTGEIPSGLSN-CTNLN 493
Query: 545 EIYMYKCNIHGRIPKEIGSXXXXXXXXXXXXXXXXXXPMTLGRLKKLQGLYLQNNKFEGP 604
I + + G IPK IG P LG + L L L N F G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 605 IPQE-----------FCHFSRLYEVDMNGNK-----------LSGSIPSCLGDXXXXXXX 642
IP F R + +G K G L
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 643 XXXXXXXTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIP 702
TF N ++ D S N L+G +P EIG++ + ++L N +SG+IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 703 STIVGLKNLQRLSLKHNKLQGPIPESF 729
+ L+ L L L NKL G IP++
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAM 700
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 157/338 (46%), Gaps = 26/338 (7%)
Query: 67 CDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELR 126
C N + L + + G TG IP L N S L +L LS N+ SGTIP +G+L+KL++L+
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 127 LRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDFSNNSLTGSFP 186
L N L+GEIP TG IP+ + N ++++ + SNN LTG P
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW-ISLSNNRLTGEIP 507
Query: 187 DDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLP----RDLGNLT 242
+ L L L +S N F G IP L C+ L L+ N F G +P + G +
Sbjct: 508 KWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
Query: 243 R---------------LKSLYLGFNNLI---GEIPEELGNLAELEMLVLTSNLLTGAIPA 284
+K G NL+ G E+L L+ +TS + G
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626
Query: 285 SIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLST 344
+ N SM+ LD + N L+G P + +P L L + +N G IP+ + + L+
Sbjct: 627 TFDNNGSMM-FLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 345 VSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQ 382
+ LS N+ GRIP+ + T L + L NNL G IP+
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 176/587 (29%), Positives = 254/587 (43%), Gaps = 76/587 (12%)
Query: 65 ITCDIYGNRVTSLTIPDLG---LTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTK 121
I+ D+ +R +L D+ + IP +LG+ S+LQ L +S N SG R I T+
Sbjct: 187 ISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 122 LKELRLRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDFSNNSL 181
LK L + N+ G IP P + +L +S + N
Sbjct: 246 LKLLNISSNQFVGPIP-----------------------PLPLKSLQYLS----LAENKF 278
Query: 182 TGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRD-LGN 240
TG PD + L GL +S N F G +P C L S +LS N F+G LP D L
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 241 LTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTN 300
+ LK L L FN GE+PE S+ NLS+ L LD ++
Sbjct: 339 MRGLKVLDLSFNEFSGELPE------------------------SLTNLSASLLTLDLSS 374
Query: 301 NSLTGSFPDDTCHGLPR--LKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPR 358
N+ +G + C P+ L+ LY+ N F G IP L +C +L ++ LSFN +G IP
Sbjct: 375 NNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 359 DLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILS 418
LG+ +KL+ L L LN L GEIPQE+ ++ LE L +D ++L G +P + N + L +S
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 419 LFNNTFSGNLPSSKXXXXXXXXXXXXXXXXXFSGSIPSFCFNASKLYALELGYNSFSGLI 478
L NN +G +P K FSG+IP+ + L L+L N F+G I
Sbjct: 494 LSNNRLTGEIP--KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 479 PEAXXXXXXXXXX---------------XXXXXXXTSSTSELMSFFSALVNCKSLKVIVL 523
P A + E S +N S +
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 524 SENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSXXXXXXXXXXXXXXXXXXPM 583
+ + G S +++ S+ + M + G IPKEIGS P
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 584 TLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIP 630
+G L+ L L L +NK +G IPQ + L E+D++ N LSG IP
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 164/565 (29%), Positives = 238/565 (42%), Gaps = 81/565 (14%)
Query: 174 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGR 233
LD S N L+G F + LK L +S NQF GPIP K L SL+ N+FTG
Sbjct: 225 LDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE 281
Query: 234 LPRDL-GNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSM 292
+P L G L L L N+ G +P G+ + LE L L+SN +G +P
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 293 LTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKD----LSTVSLS 348
L LD + N +G P+ + L L +S N F GPI NL C++ L + L
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQ 399
Query: 349 FNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTI 408
N FTG+IP L N ++L SLHL N L G IP +G+L L L + + L G +P +
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 409 LNISTLKILSLFNNTFSGNLPSSKXXXXXXXXXXXXXXXXXFSGSIPSFCFNASKLYALE 468
+ + TL+ L L N +G +PS +G IP + L L+
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 469 LGYNSFSGLIPEAXXXXXXXXXXXXXXXXXTSSTSELMSFFSALVNCKSLKVIVLSENPL 528
L NSFSG IP + L +C+SL + L+ N
Sbjct: 518 LSNNSFSGNIP------------------------------AELGDCRSLIWLDLNTNLF 547
Query: 529 DGVLPSSIGNHSVSVE------EIYMYKCNIHGRIPKEIGSXXXXXXXXXXXXXXXXXXP 582
+G +P+++ S + + Y+Y N + KE
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKN--DGMKKECHGAGNLLEFQGIRSE------ 599
Query: 583 MTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDXXXXXXX 642
L RL + + + G F + + +DM+ N LSG IP +G
Sbjct: 600 -QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS------- 651
Query: 643 XXXXXXXTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIP 702
+P F + N ++GS+P E+G+L+ + +DLS N+L G IP
Sbjct: 652 ----------MPYLFI-------LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 703 STIVGLKNLQRLSLKHNKLQGPIPE 727
+ L L + L +N L GPIPE
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 199/742 (26%), Positives = 305/742 (41%), Gaps = 81/742 (10%)
Query: 22 AAANISRDQDALLSVKAHIINDNPRNILAQNWTSNTSVCSWMGITCDIYGNRVTSLTIPD 81
+ ++ R+ L+S K + + N L +W+SN + C++ G+TC ++VTS+ +
Sbjct: 3 GSQSLYREIHQLISFKDVLPDKN----LLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSS 56
Query: 82 LGLT---GTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPX 138
L + S L +L+ L++L LS++ +G++ L L L N L G +
Sbjct: 57 KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTT 115
Query: 139 XXXXXXXXXXXXXXXXXXTGTIPASI---FNLSSISTGLDFSNNSLTGSFPDD--MCEGL 193
T P + L+S+ LD S NS++G+ + +G
Sbjct: 116 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV-LDLSANSISGANVVGWVLSDGC 174
Query: 194 PRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNN 253
LK L +S N+ G + ++ C L +S N F+ +P LG+ + L+ L + N
Sbjct: 175 GELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 231
Query: 254 LIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCH 313
L G+ + EL++L ++SN G IP L S L L N TG PD
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKS-LQYLSLAENKFTGEIPDFLSG 288
Query: 314 GLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRD-LGNSTKLKSLHLG 372
L GL +S N F G +P C L +++LS N F+G +P D L LK L L
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 373 LNNLIGEIPQEIGNLR-NLEILGIDQSNLVG-FVPDTILN-ISTLKILSLFNNTFSGNLP 429
N GE+P+ + NL +L L + +N G +P+ N +TL+ L L NN F+G +P
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 430 SSKXXXXXXXXXXXXXXXXXFSGSIPSFCFNASKLYALELGYNSFSGLIPEAXXXXXXXX 489
+ SG+IPS + SKL L+L N G IP+
Sbjct: 409 PT--LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--------- 457
Query: 490 XXXXXXXXXTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMY 549
ELM K+L+ ++L N L G +PS + N ++ I +
Sbjct: 458 --------------ELMYV-------KTLETLILDFNDLTGEIPSGLSN-CTNLNWISLS 495
Query: 550 KCNIHGRIPKEIGSXXXXXXXXXXXXXXXXXXPMTLGRLKKLQGLYLQNNKFEGPIPQE- 608
+ G IPK IG P LG + L L L N F G IP
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 609 ----------FCHFSRLYEVDMNGNK-----------LSGSIPSCLGDXXXXXXXXXXXX 647
F R + +G K G L
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 648 XXTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVG 707
TF N ++ D S N L+G +P EIG++ + ++L N +SG+IP +
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 675
Query: 708 LKNLQRLSLKHNKLQGPIPESF 729
L+ L L L NKL G IP++
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAM 697
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 157/338 (46%), Gaps = 26/338 (7%)
Query: 67 CDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELR 126
C N + L + + G TG IP L N S L +L LS N+ SGTIP +G+L+KL++L+
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 127 LRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDFSNNSLTGSFP 186
L N L+GEIP TG IP+ + N ++++ + SNN LTG P
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW-ISLSNNRLTGEIP 504
Query: 187 DDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLP----RDLGNLT 242
+ L L L +S N F G IP L C+ L L+ N F G +P + G +
Sbjct: 505 KWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 563
Query: 243 R---------------LKSLYLGFNNLI---GEIPEELGNLAELEMLVLTSNLLTGAIPA 284
+K G NL+ G E+L L+ +TS + G
Sbjct: 564 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 623
Query: 285 SIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLST 344
+ N SM+ LD + N L+G P + +P L L + +N G IP+ + + L+
Sbjct: 624 TFDNNGSMM-FLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 681
Query: 345 VSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQ 382
+ LS N+ GRIP+ + T L + L NNL G IP+
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 15/238 (6%)
Query: 160 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKG 219
IP+S+ NL ++ N+L G P + + L +L LY+++ G IP+ L K
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 220 LSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAEL-EMLVLTSNLL 278
L + S+N +G LP + +L L + N + G IP+ G+ ++L + ++ N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 279 TGAIPASIFNLSSMLTALDFTNNSLTGS----FPDDTCHGLPRLKGLYMSYNQFKGPIPN 334
TG IP + NL+ L +D + N L G F D + ++++ N +
Sbjct: 187 TGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDK-----NTQKIHLAKNSLAFDL-G 238
Query: 335 NLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEI 392
+ K+L+ + L N+ G +P+ L L SL++ NNL GEIPQ GNL+ ++
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDV 295
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 116/302 (38%), Gaps = 59/302 (19%)
Query: 28 RDQDALLSVKAHIINDNPRNILAQNWTSNTSVC--SWMGITCDIYGN--RVTSLTIPDLG 83
+D+ ALL +K + NP + +W T C +W+G+ CD RV +L + L
Sbjct: 6 QDKQALLQIKKDL--GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 84 L---------------------------TGTIPSYLGNLSSLQTLVLSHNWFSGTIPREI 116
L G IP + L+ L L ++H SG IP +
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 117 GNLTKLKELRLRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDF 176
+ L L YN L G +P +G IP S + S + T +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 177 SNNSLTGSFP--------------DDMCEGLPRL--------KGLYVSYNQFKGPIPNNL 214
S N LTG P +M EG + + ++++ N + +
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKV 240
Query: 215 WHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLT 274
K L+ L N+ G LP+ L L L SL + FNNL GEIP+ GNL ++
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299
Query: 275 SN 276
+N
Sbjct: 300 NN 301
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 5/234 (2%)
Query: 174 LDFSNNSLTGSFP-DDMCEGLPRLKGLYVS-YNQFKGPIPNNLWHCKGLSSASLSFNQFT 231
LD S +L +P LP L LY+ N GPIP + L ++ +
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 232 GRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSS 291
G +P L + L +L +N L G +P + +L L + N ++GAIP S + S
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 292 MLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQ 351
+ T++ + N LTG P + L + +S N +G K+ + L+ N
Sbjct: 175 LFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 352 FTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVP 405
+ + +G S L L L N + G +PQ + L+ L L + +NL G +P
Sbjct: 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 109/277 (39%), Gaps = 61/277 (22%)
Query: 356 IPRDLGNSTKLKSLHLG-LNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTL 414
IP L N L L++G +NNL+G IP I L L L I +N+ G +PD + I TL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 415 KILSLFNNTFSGNLPSSKXXXXXXXXXXXXXXXXXFSGSIPSFCFNASKLY-ALELGYNS 473
L N SG LP S SG+IP + SKL+ ++ + N
Sbjct: 128 VTLDFSYNALSGTLPPS--ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 474 FSGLIPEAXXXXXXXXXXXXXXXXXTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLP 533
+G IP F+ L +L + LS N L+G
Sbjct: 186 LTGKIPPT---------------------------FANL----NLAFVDLSRNMLEGDAS 214
Query: 534 SSIGNHSVSVEEIYMYKCNIHGRIPKEIGSXXXXXXXXXXXXXXXXXXPMTLGRLKKLQG 593
G+ + ++I++ K ++ + K +G K L G
Sbjct: 215 VLFGSDK-NTQKIHLAKNSLAFDLGK-------------------------VGLSKNLNG 248
Query: 594 LYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIP 630
L L+NN+ G +PQ L+ ++++ N L G IP
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 26/150 (17%)
Query: 582 PMTLGRLKKLQGLYLQN-NKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDXXXXX 640
P +L L L LY+ N GPIP ++L+ + + +SG+IP L
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ----- 123
Query: 641 XXXXXXXXXTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGN 700
++ +++ DFS N+L+G+LP I +L +V I NR+SG
Sbjct: 124 -------------------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 701 IPSTIVGLKNL-QRLSLKHNKLQGPIPESF 729
IP + L +++ N+L G IP +F
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 8/205 (3%)
Query: 526 NPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSXXXXXXXXXXXXXXXXXXPMTL 585
N L G +P +I + + +Y+ N+ G IP + P ++
Sbjct: 87 NNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 586 GRLKKLQGLYLQNNKFEGPIPQEFCHFSRLY-EVDMNGNKLSGSIPSCLGDXXXXXXXXX 644
L L G+ N+ G IP + FS+L+ + ++ N+L+G IP +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205
Query: 645 XXXXX--TSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIP 702
S++ + N + I + NSL L ++G K + +DL NR+ G +P
Sbjct: 206 RNMLEGDASVLFGSDKNTQKI---HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP 261
Query: 703 STIVGLKNLQRLSLKHNKLQGPIPE 727
+ LK L L++ N L G IP+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 111/272 (40%), Gaps = 47/272 (17%)
Query: 56 NTSVCSWMGITCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPRE 115
N ++C G C N+ S+ LT IPS + + + L L N S +
Sbjct: 1 NEALCKKDGGVCSCNNNK-NSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKA 56
Query: 116 IGNLTKLKELRLRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFN-LSSISTGL 174
LTKL+ L L NKLQ T+PA IF L ++ T L
Sbjct: 57 FHRLTKLRLLYLNDNKLQ-------------------------TLPAGIFKELKNLET-L 90
Query: 175 DFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRL 234
++N L + P + + L L L + NQ K P L+ SL +N+ L
Sbjct: 91 WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-L 148
Query: 235 PRDL-GNLTRLKSLYLGFNNLIGEIPE-ELGNLAELEMLVLTSNLLTGAIPASIFNLSSM 292
P+ + LT LK L L +NN + +PE L EL+ L L +N L +P F+
Sbjct: 149 PKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEK 206
Query: 293 LTALDFTNNSLTGSFPDDTCHGLPRLKGLYMS 324
L L N D TC+G+ +YM+
Sbjct: 207 LKMLQLQENPW-----DCTCNGI-----IYMA 228
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 6/183 (3%)
Query: 245 KSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLT 304
K L L N L + L +L +L L N L +PA IF L L T+N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 305 GSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNS- 363
+ P L L L + NQ K P L+ +SL +N+ +P+ + +
Sbjct: 99 -ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKL 156
Query: 364 TKLKSLHLGLNNLIGEIPQ-EIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNN 422
T LK L L NN + +P+ L L+ L +D + L ++ LK+L L N
Sbjct: 157 TSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 423 TFS 425
+
Sbjct: 216 PWD 218
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 10/169 (5%)
Query: 160 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKG 219
IPA L STGL + D GL +L L + YNQ +
Sbjct: 33 IPADTEKLDLQSTGL--------ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84
Query: 220 LSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLT 279
L + L+ NQ +LT+L LYLG N L L +L+ L L +N L
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 280 GAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQF 328
+IPA F+ + L L + N L S P L +L+ + + NQF
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 91/247 (36%), Gaps = 63/247 (25%)
Query: 119 LTKLKELRLRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIF-NLSSISTGLDFS 177
LTKL L L YN+LQ T+ A +F +L+ + T L +
Sbjct: 58 LTKLTWLNLDYNQLQ-------------------------TLSAGVFDDLTELGT-LGLA 91
Query: 178 NNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRD 237
NN L S P + + L +L LY+ NQ K +P+ ++
Sbjct: 92 NNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFD--------------------- 128
Query: 238 LGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALD 297
LT+LK L L N L L L+ L L++N L ++P F+ L +
Sbjct: 129 --RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185
Query: 298 FTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIP 357
N F C L + + + N+ K NL D T S G++
Sbjct: 186 LFGN----QFDCSRCETLYLSQWIRENSNKVKDGTGQNLHESPDGVTCS------DGKVV 235
Query: 358 RDLGNST 364
R + N T
Sbjct: 236 RTVTNET 242
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 26/160 (16%)
Query: 265 LAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMS 324
L +L L L N L + A +F+ + L L NN L S P L +L LY+
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 325 YNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEI 384
NQ K +P+ + F++ T KLK L L N L
Sbjct: 116 GNQLK-SLPSGV------------FDRLT-----------KLKELRLNTNQLQSIPAGAF 151
Query: 385 GNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTF 424
L NL+ L + + L + L+ ++LF N F
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 10/169 (5%)
Query: 160 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKG 219
IPA L STGL + D GL +L L + YNQ +
Sbjct: 33 IPADTEKLDLQSTGL--------ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84
Query: 220 LSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLT 279
L + L+ NQ +LT+L LYLG N L L +L+ L L +N L
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 280 GAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQF 328
+IPA F+ + L L + N L S P L +L+ + + NQF
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 91/247 (36%), Gaps = 63/247 (25%)
Query: 119 LTKLKELRLRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIF-NLSSISTGLDFS 177
LTKL L L YN+LQ T+ A +F +L+ + T L +
Sbjct: 58 LTKLTWLNLDYNQLQ-------------------------TLSAGVFDDLTELGT-LGLA 91
Query: 178 NNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRD 237
NN L S P + + L +L LY+ NQ K +P+ ++
Sbjct: 92 NNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFD--------------------- 128
Query: 238 LGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALD 297
LT+LK L L N L L L+ L L++N L ++P F+ L +
Sbjct: 129 --RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185
Query: 298 FTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIP 357
N F C L + + + N+ K NL D T S G++
Sbjct: 186 LFGN----QFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCS------DGKVV 235
Query: 358 RDLGNST 364
R + N T
Sbjct: 236 RTVTNET 242
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 26/160 (16%)
Query: 265 LAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMS 324
L +L L L N L + A +F+ + L L NN L S P L +L LY+
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 325 YNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEI 384
NQ K +P+ + F++ T KLK L L N L
Sbjct: 116 GNQLK-SLPSGV------------FDRLT-----------KLKELRLNTNQLQSIPAGAF 151
Query: 385 GNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTF 424
L NL+ L + + L + L+ ++LF N F
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 195 RLKGLYVSYNQFKG-PIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNN 253
+++ +Y+ YN K P+ +L K L +NQ G+LP G+ +L SL L +N
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQ 364
Query: 254 LIGEIPEEL-GNLAELEMLVLTSNLLTGAIPASIFNLS--SMLTALDFTNNSL 303
I EIP G ++E L N L IP +IF+ S+ +A+DF+ N +
Sbjct: 365 -ITEIPANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVXSAIDFSYNEI 414
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 317 RLKGLYMSYNQFKG-PIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNN 375
+++ +Y+ YN K P+ +L K L + +NQ G++P G+ KL SL+L N
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQ 364
Query: 376 LIGEIP 381
I EIP
Sbjct: 365 -ITEIP 369
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 48/251 (19%)
Query: 96 SSLQTLVLSHNWFSGTIPRE--IGNLTKLKELRLRYNKLQGEIPXXXXXXXXXXXXXXXX 153
+Q + + +N T P E + KL L YN+L+G++P
Sbjct: 305 EKIQIIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLPAF-------------- 349
Query: 154 XXXTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNN 213
S L+S L+ + N +T P + C +++ L ++N+ K IPN
Sbjct: 350 --------GSEIKLAS----LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPN- 394
Query: 214 LWHCKGLSSAS---LSFNQFTGRLPRDLGNL--TRLKSLYLGF----NNLIGEIPEELGN 264
++ K +S S S+N+ ++ L T K + + NN I + P+EL +
Sbjct: 395 IFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454
Query: 265 LAE-LEMLVLTSNLLTGAIPASI------FNLSSMLTALDFTNNSLTGSFPDDTCHGLPR 317
L + L N LT S+ F + +LT++D N LT D LP
Sbjct: 455 TGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514
Query: 318 LKGLYMSYNQF 328
L G+ +SYN F
Sbjct: 515 LVGIDLSYNSF 525
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 32/187 (17%)
Query: 247 LYLGFNN--LIGEIPEELGNLAELEMLVLTSNLLTG-AIPASIFNLSSMLTALDFTNNSL 303
L+L F+N L + E G+L ELE L+L N L + A + L LD + NS
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS- 385
Query: 304 TGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNS 363
+SY++ KG W K L ++++S N T I R L
Sbjct: 386 -------------------VSYDEKKGDCS---W-TKSLLSLNMSSNILTDTIFRCLPPR 422
Query: 364 TKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILN-ISTLKILSLFNN 422
K+ LH +N I IP+++ L L+ L + SN + VPD I + +++L+ + L N
Sbjct: 423 IKVLDLH---SNKIKSIPKQVVKLEALQELNV-ASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Query: 423 TFSGNLP 429
+ + P
Sbjct: 479 PWDCSCP 485
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 62/196 (31%)
Query: 233 RLPRDLGNLTRLKSLYLGFNNLIGEI-PEELGNLAELEMLVLTSNLLTGAIPASIFNLSS 291
+P+DL T + ++ N I E+ ++ +L++L +L+++ N + + S+F +
Sbjct: 14 HVPKDLSQKTTILNIS---QNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQ 69
Query: 292 MLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKG-PIPNNLWHCKDLSTVSLSFN 350
L LD ++N L +CH LK L +S+N F PI CK
Sbjct: 70 ELEYLDLSHNKLVKI----SCHPTVNLKHLDLSFNAFDALPI------CK---------- 109
Query: 351 QFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNL--VGFVPDTI 408
E GN+ L+ LG+ ++L +P
Sbjct: 110 --------------------------------EFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 409 LNISTLKILSLFNNTF 424
LNIS K+L + T+
Sbjct: 138 LNIS--KVLLVLGETY 151
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 244 LKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSL 303
++ LY+GFN + P N+ L +LVL N L+ ++P IF+ + LT L +NN+L
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 159
Query: 304 TGSFPDDTCHGLPRLKGLYMSYNQF 328
DDT L+ L +S N+
Sbjct: 160 -ERIEDDTFQATTSLQNLQLSSNRL 183
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 30/142 (21%)
Query: 228 NQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIF 287
NQ T P +L LK LYLG N L GA+P +F
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQL-------------------------GALPVGVF 84
Query: 288 NLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSL 347
+ + LT LD N LT P L LK L+M N+ +P + L+ ++L
Sbjct: 85 DSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 348 SFNQFTGRIPRDLGNSTKLKSL 369
NQ IP G +L SL
Sbjct: 143 DQNQLKS-IPH--GAFDRLSSL 161
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 158 GTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHC 217
++PA I + I L +N +T P + + L LK LY+ NQ G +P ++
Sbjct: 32 ASVPAGIPTNAQI---LYLHDNQITKLEPG-VFDSLINLKELYLGSNQL-GALPVGVFDS 86
Query: 218 -KGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSN 276
L+ L NQ T L LK L++ N L E+P + L L L L N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 277 LLTGAIPASIFN-LSSMLTALDFTN 300
L +IP F+ LSS+ A F N
Sbjct: 146 QLK-SIPHGAFDRLSSLTHAYLFGN 169
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 315 LPRLKGLYMSYNQFKGPIPNNLWHC-KDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGL 373
L LK LY+ NQ G +P ++ L+ + L NQ T LK L +
Sbjct: 63 LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121
Query: 374 NNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNN 422
N L E+P+ I L +L L +DQ+ L +S+L LF N
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 70/190 (36%), Gaps = 43/190 (22%)
Query: 58 SVCSWMGITCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIG 117
S CS G T D R S +P+ G ++ Q L L N + P
Sbjct: 15 SQCSCSGTTVDCRSKRHAS-----------VPA--GIPTNAQILYLHDNQITKLEPGVFD 61
Query: 118 NLTKLKELRLRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDFS 177
+L LKEL L N+L G +P +F+ + T LD
Sbjct: 62 SLINLKELYLGSNQL-------------------------GALPVGVFDSLTQLTVLDLG 96
Query: 178 NNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRD 237
N LT P + + L LK L++ N+ +P + L+ +L NQ +P
Sbjct: 97 TNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPH- 152
Query: 238 LGNLTRLKSL 247
G RL SL
Sbjct: 153 -GAFDRLSSL 161
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 244 LKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSL 303
++ LY+GFN + P N+ L +LVL N L+ ++P IF+ + LT L +NN+L
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 153
Query: 304 TGSFPDDTCHGLPRLKGLYMSYNQF 328
DDT L+ L +S N+
Sbjct: 154 -ERIEDDTFQATTSLQNLQLSSNRL 177
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 32/170 (18%)
Query: 263 GNLAELEMLVLTSNLLTGAIPASIF--NLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKG 320
L L+ L+L N L ++ N+SS+ T LD + NSL D TC
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLET-LDVSLNSLNSHAYDRTC-------- 424
Query: 321 LYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEI 380
W + + ++LS N TG + R L K+ LH NN I I
Sbjct: 425 ---------------AW-AESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSI 465
Query: 381 PQEIGNLRNLEILGIDQSNLVGFVPDTILN-ISTLKILSLFNNTFSGNLP 429
P+++ +L+ L+ L + SN + VPD + + +++L+ + L +N + P
Sbjct: 466 PKDVTHLQALQELNV-ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 22/112 (19%)
Query: 285 SIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLST 344
IFN+S+ + DF L LY++ N +P + + +L
Sbjct: 235 QIFNISANIFKYDF-------------------LTRLYLNGNSL-TELPAEIKNLSNLRV 274
Query: 345 VSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGID 396
+ LS N+ T +P +LG+ +LK + +N++ +P E GNL NL+ LG++
Sbjct: 275 LDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVE 324
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 210 IPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELE 269
+P + + L LS N+ T LP +LG+ +LK Y F+N++ +P E GNL L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQ 319
Query: 270 MLVLTSNLL 278
L + N L
Sbjct: 320 FLGVEGNPL 328
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 212 NNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEML 271
+ LWH LS+ + FN D LTRL YL N+L E+P E+ NL+ L +L
Sbjct: 223 DQLWHALDLSNLQI-FNISANIFKYDF--LTRL---YLNGNSLT-ELPAEIKNLSNLRVL 275
Query: 272 VLTSNLLTGAIPASI 286
L+ N LT ++PA +
Sbjct: 276 DLSHNRLT-SLPAEL 289
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 88 IPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLK 123
+P+ + NLS+L+ L LSHN + ++P E+G+ +LK
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 90 SYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPXXXXXXXXXXXX 149
S L L++L L+L+ N LT LKEL L N+LQ +P
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 150 XXXXXXXTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP 209
++P +F+ + T LD NN L S P+ + + L +LK L ++ NQ K
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKS- 195
Query: 210 IPNNLW 215
+P+ ++
Sbjct: 196 VPDGVF 201
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 27/205 (13%)
Query: 218 KGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNL 277
K L + L N+ + P L +L+ LYL N L E+PE++ L+ L + N
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENE 132
Query: 278 LTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTC---------------------HGLP 316
+T + S+FN + + ++ N L S ++ GLP
Sbjct: 133 IT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 317 -RLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNN 375
L L++ N+ +L +L+ + LSFN + L N+ L+ LHL N
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 376 LIGEIPQEIGNLRNLEILGIDQSNL 400
L+ ++P + + + ++++ + +N+
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 100/267 (37%), Gaps = 21/267 (7%)
Query: 68 DIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRL 127
D+ N++T + D NL +L TL+L +N S P L KL+ L L
Sbjct: 58 DLQNNKITEIKDGDFK----------NLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107
Query: 128 RYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDFSNNSLTGS-FP 186
N+L+ E+P + S+FN + ++ N L S
Sbjct: 108 SKNQLK-ELPEKMPKTLQELRVHENEIT---KVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
Query: 187 DDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKS 246
+ +G+ +L + ++ IP L L+ L N+ T L L L
Sbjct: 164 NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 247 LYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGS 306
L L FN++ L N L L L +N L +P + + + + NN+++
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD-HKYIQVVYLHNNNISAI 278
Query: 307 FPDDTC-HGLPRLKGLYMSYNQFKGPI 332
+D C G K Y + F P+
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPV 305
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 12/203 (5%)
Query: 225 LSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEI-PEELGNLAELEMLVLTSNLLTGAIP 283
L N+ T D NL L +L L NN I +I P L +LE L L+ N L +P
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISPGAFAPLVKLERLYLSKNQLK-ELP 116
Query: 284 ASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGP-IPNNLWH-CKD 341
+ L L N +T +GL ++ + + N K I N + K
Sbjct: 117 EK---MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 342 LSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLV 401
LS + ++ T IP+ L S L LHL N + + L NL LG+ +++
Sbjct: 173 LSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 402 GFVPDTILNISTLKILSLFNNTF 424
++ N L+ L L NN
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 27/205 (13%)
Query: 218 KGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNL 277
K L + L N+ + P L +L+ LYL N L E+PE++ L+ L + N
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENE 132
Query: 278 LTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTC---------------------HGLP 316
+T + S+FN + + ++ N L S ++ GLP
Sbjct: 133 IT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 317 -RLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNN 375
L L++ N+ +L +L+ + LSFN + L N+ L+ LHL N
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 376 LIGEIPQEIGNLRNLEILGIDQSNL 400
L+ ++P + + + ++++ + +N+
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 100/267 (37%), Gaps = 21/267 (7%)
Query: 68 DIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRL 127
D+ N++T + D NL +L TL+L +N S P L KL+ L L
Sbjct: 58 DLQNNKITEIKDGDFK----------NLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107
Query: 128 RYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDFSNNSLTGS-FP 186
N+L+ E+P + S+FN + ++ N L S
Sbjct: 108 SKNQLK-ELPEKMPKTLQELRVHENEIT---KVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
Query: 187 DDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKS 246
+ +G+ +L + ++ IP L L+ L N+ T L L L
Sbjct: 164 NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 247 LYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGS 306
L L FN++ L N L L L +N L +P + + + + NN+++
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD-HKYIQVVYLHNNNISAI 278
Query: 307 FPDDTC-HGLPRLKGLYMSYNQFKGPI 332
+D C G K Y + F P+
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPV 305
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 12/203 (5%)
Query: 225 LSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEI-PEELGNLAELEMLVLTSNLLTGAIP 283
L N+ T D NL L +L L NN I +I P L +LE L L+ N L +P
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISPGAFAPLVKLERLYLSKNQLK-ELP 116
Query: 284 ASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGP-IPNNLWH-CKD 341
+ L L N +T +GL ++ + + N K I N + K
Sbjct: 117 EK---MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 342 LSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLV 401
LS + ++ T IP+ L S L LHL N + + L NL LG+ +++
Sbjct: 173 LSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 402 GFVPDTILNISTLKILSLFNNTF 424
++ N L+ L L NN
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKL 252
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 90 SYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPXXXXXXXXXXXX 149
S L L++L L+L+ N LT LKEL L N+LQ +P
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 150 XXXXXXXTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP 209
++P +F+ + T LD S N L S P+ + + L +LK L + NQ K
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS- 195
Query: 210 IPNNLW 215
+P+ ++
Sbjct: 196 VPDGVF 201
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 241 LTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTN 300
L ++ L LG N L L L L L+LT N L ++P +F+ + L L
Sbjct: 62 LPNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118
Query: 301 NSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLW-HCKDLSTVSLSFNQFTGRIPRD 359
N L S PD L L L +++NQ + +P ++ +L+ + LS+NQ
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 360 LGNSTKLKSLHLGLNNL 376
T+LK L L N L
Sbjct: 177 FDKLTQLKDLRLYQNQL 193
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 159 TIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLW-HC 217
++P +F+ + L N L S PD + + L L L +++NQ + +P ++
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKL 156
Query: 218 KGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEEL-GNLAELEMLVLTSN 276
L+ LS+NQ LT+LK L L + N + +P+ + L L+ + L N
Sbjct: 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 241 LTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTN 300
LT L LYLG N L L L L L++N L ++P +F+ + L L
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109
Query: 301 NSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLW 337
N L S PD L +LK L + NQ K +P+ ++
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVF 144
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
+ D S N L SLPL L A+ +D+S+NRL+ + GL LQ L LK N+L+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP L L +S+NQ + +P L+ +SFN+ T L L L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 253 NLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSL 303
L P L +LE L L +N LT +PA + N L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 293 LTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQF 352
LT LD + N LT S P GL L+ LY+ N+ K P L L +SL+ NQ
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 353 T 353
T
Sbjct: 161 T 161
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 172 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFT 231
T LD S N LT S P GL L+ LY+ N+ K P L L SL+ NQ T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 232 GRLPRDLGN-LTRLKSLYLGFNNL 254
LP L N L L +L L N+L
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
+ D S N L SLPL L A+ +D+S+NRL+ + GL LQ L LK N+L+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP L L +S+NQ + +P L+ +SFN+ T L L L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 253 NLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSL 303
L P L +LE L L +N LT +PA + N L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 293 LTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQF 352
LT LD + N LT S P GL L+ LY+ N+ K P L L +SL+ NQ
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 353 T 353
T
Sbjct: 161 T 161
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 172 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFT 231
T LD S N LT S P GL L+ LY+ N+ K P L L SL+ NQ T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 232 GRLPRDLGN-LTRLKSLYLGFNNL 254
LP L N L L +L L N+L
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
+ D S N L SLPL L A+ +D+S+NRL+ + GL LQ L LK N+L+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP L L +S+NQ + +P L+ +SFN+ T L L L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 253 NLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSL 303
L P L +LE L L +N LT +PA + N L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
+ D S N L SLPL L A+ +D+S+NRL+ + GL LQ L LK N+L+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP L L +S+NQ + +P L+ +SFN+ T L L L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 253 NLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSL 303
L P L +LE L L +N LT +PA + N L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
+ D S N L SLPL L A+ +D+S+NRL+ + GL LQ L LK N+L+
Sbjct: 82 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP L L +S+NQ + +P L+ +SFN+ T L L L+ LYL N
Sbjct: 77 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 253 NLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSL 303
L P L +LE L L +N LT +PA + N L L NSL
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
+ D S N L SLPL L A+ +D+S+NRL+ + GL LQ L LK N+L+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 188 DMCE--------GLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLG 239
D CE LP L L +S+NQ + +P L+ +SFN+ T L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 240 NLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFT 299
L L+ LYL N L P L +LE L L +N LT +PA + N L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQ 180
Query: 300 NNSL 303
NSL
Sbjct: 181 ENSL 184
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 293 LTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQF 352
LT LD + N LT S P GL L+ LY+ N+ K P L L +SL+ NQ
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 353 T 353
T
Sbjct: 161 T 161
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 172 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFT 231
T LD S N LT S P GL L+ LY+ N+ K P L L SL+ NQ T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 232 GRLPRDLGN-LTRLKSLYLGFNNL 254
LP L N L L +L L N+L
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
+ D S N L SLPL L A+ +D+S+NRL+ + GL LQ L LK N+L+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP L L +S+NQ + +P L+ +SFN+ T L L L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 253 NLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSL 303
L P L +LE L L +N LT +PA + N L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 184 SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGL---SSASLSFNQF--TGRLPRDL 238
P+D C +++GL S+N+ K IPN +++ K + S S+N+ GR
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPN-IFNAKSVYVXGSVDFSYNKIGSEGR----- 661
Query: 239 GNLTRLKSLYLGFN--------NLIGEIPEEL-GNLAELEMLVLTSNLLTGAIPASI--- 286
N++ Y G N N I + P EL + + ++L++NL T S+
Sbjct: 662 -NISCSXDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIPENSLKPK 720
Query: 287 ---FNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQF 328
+ + +LT +D N LT D LP L +SYN F
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNXDVSYNCF 765
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
+ D S N L SLPL L A+ +D+S+NRL+ + GL LQ L LK N+L+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 188 DMCE--------GLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLG 239
D CE LP L L +S+NQ + +P L+ +SFN+ T L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 240 NLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFT 299
L L+ LYL N L P L +LE L L +N LT +PA + N L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQ 180
Query: 300 NNSL 303
NSL
Sbjct: 181 ENSL 184
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 293 LTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQF 352
LT LD + N LT S P GL L+ LY+ N+ K P L L +SL+ NQ
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 353 T 353
T
Sbjct: 161 T 161
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 172 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFT 231
T LD S N LT S P GL L+ LY+ N+ K P L L SL+ NQ T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 232 GRLPRDLGN-LTRLKSLYLGFNNL 254
LP L N L L +L L N+L
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
+ D S N L SLPL L A+ +D+S+NRL+ + GL LQ L LK N+L+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP L L +S+NQ + +P L+ +SFN+ T L L L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 253 NLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSL 303
L P L +LE L L +N LT +PA + N L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
+ D S N L SLPL L A+ +D+S+NRL+ + GL LQ L LK N+L+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP L L +S+NQ + +P L+ +SFN+ T L L L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 253 NLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSL 303
L P L +LE L L +N LT +PA + N L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 652 IIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNL 711
I + FW L +L + S N L NL + +DLS+N + + +GL NL
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373
Query: 712 QRLSLKHNKLQGPIPE 727
+ L+L N+L+ +P+
Sbjct: 374 KELALDTNQLKS-VPD 388
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 219 GLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLL 278
G+ + LS ++ L + T L+ L L N + L L L L+ N L
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335
Query: 279 TGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLW- 337
G+I + +F L LD + N + + D + GLP LK L + NQ K +P+ ++
Sbjct: 336 -GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKS-VPDGIFD 392
Query: 338 HCKDLSTVSLSFNQFTGRIPR 358
L + L N + PR
Sbjct: 393 RLTSLQKIWLHTNPWDCSCPR 413
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 218 KGLSSA---SLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGN----LAELEM 270
+GLSS L +NQF L L+ L L NL G + GN L LEM
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEM 133
Query: 271 LVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDD 310
LVL N + PAS F LD T N + +D
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 651 SIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKN 710
+++P N + + D S+N ++ N+ ++ + LS+NRL P T GLK+
Sbjct: 44 TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103
Query: 711 LQRLSLKHNKLQGPIPE 727
L+ LSL N + +PE
Sbjct: 104 LRLLSLHGNDI-SVVPE 119
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 677 LPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQGPIPESF 729
+P E+ N K + IDLS NR+S + + L L L +N+L+ P +F
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 255 IGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHG 314
+ ++P++L + +L LT N L +PA+ F S LT+LD N+++ P + C
Sbjct: 26 LTQVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQK 81
Query: 315 LPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFN 350
LP LK L + +N+ C +L+ + L N
Sbjct: 82 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 117
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 255 IGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHG 314
+ ++P++L + +L LT N L +PA+ F S LT+LD N+++ P + C
Sbjct: 21 LTQVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQK 76
Query: 315 LPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFN 350
LP LK L + +N+ C +L+ + L N
Sbjct: 77 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 112
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 255 IGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHG 314
+ ++P++L + +L LT N L +PA+ F S LT+LD N+++ P + C
Sbjct: 16 LTQVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQK 71
Query: 315 LPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFN 350
LP LK L + +N+ C +L+ + L N
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 210 IPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNL---A 266
+P+ GL + +L+ N LP + +L RL+ L + + E+PE L +
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 267 ELEMLVLTSNL---LTG--AIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGL 321
E + LV +L TG ++PASI NL + L +L N+ L+ P H LP+L+ L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQN-LKSLKIRNSPLSALGP--AIHHLPKLEEL 234
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 82/210 (39%), Gaps = 19/210 (9%)
Query: 92 LGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPXXXXXXXXXXXXXX 151
L N + L L ++ + P I NLT L L L YN+++ P
Sbjct: 151 LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV 208
Query: 152 XXXXXTGTIP-ASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPI 210
T P A+ L+S+ G NN +T P L +L L + NQ
Sbjct: 209 NQI--TDITPVANXTRLNSLKIG----NNKITDLSP---LANLSQLTWLEIGTNQISDI- 258
Query: 211 PNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEM 270
N + L ++ NQ + L NL++L SL+L N L E E +G L L
Sbjct: 259 -NAVKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTT 315
Query: 271 LVLTSNLLTGAIPASIFNLSSMLTALDFTN 300
L L+ N +T P + S + DF N
Sbjct: 316 LFLSQNHITDIRPLASL---SKXDSADFAN 342
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 33/197 (16%)
Query: 238 LGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSM----- 292
L NLT L+ LYL +N+ P L NL + L L +N NLS +
Sbjct: 106 LQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGAN----------HNLSDLSPLSN 153
Query: 293 LTALDFTNNSLTGSFPDDTC--HGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFN 350
T L++ ++T S D L L L ++YNQ + P L L + N
Sbjct: 154 XTGLNYL--TVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209
Query: 351 QFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEIL--GIDQSNLVGFVPDTI 408
Q T P + N T+L SL +G N + P + NL L L G +Q + + V D
Sbjct: 210 QITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKD-- 263
Query: 409 LNISTLKILSLFNNTFS 425
++ LK L++ +N S
Sbjct: 264 --LTKLKXLNVGSNQIS 278
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 106/281 (37%), Gaps = 68/281 (24%)
Query: 79 IPDLGLTGT----IPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQG 134
+ +L LT T +PS L LS+L+ LVLS N F N L L ++ N +
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339
Query: 135 EIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMC---- 190
E+ TG + NL ++ LD S++ + S D C
Sbjct: 340 EL-------------------GTGCLE----NLENLRE-LDLSHDDIETS---DCCNLQL 372
Query: 191 EGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRD-LGNLTRLKSLYL 249
L L+ L +SYN+ C L L+F + + + NL LK L L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432
Query: 250 GFN-------------------NLIG--------EIPEELGNLAELEMLVLTSNLLTGAI 282
+ NL G + L L LE+LVL+ L+ +I
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SI 491
Query: 283 PASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYM 323
F M+ +D ++N LT S + L LKG+Y+
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSS----SIEALSHLKGIYL 528
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 214 LWHCKGLSSASLSFNQFTGR----LPRDLGNLTRLKSLYLGFN-NLIGEIPEE--LGNLA 266
+ HC+G + TGR +PRD+ L + L N N +G I + G L
Sbjct: 5 MCHCEGTTV------DCTGRGLKEIPRDIP----LHTTELLLNDNELGRISSDGLFGRLP 54
Query: 267 ELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYN 326
L L L N LTG P + F +S + L N + + GL +LK L + N
Sbjct: 55 HLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDN 112
Query: 327 QFKGPIPNNLWHCKDLSTVSLSFNQF 352
Q +P + H L++++L+ N F
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 681 IGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722
G L +V ++L N+L+G P+ G ++Q L L NK++
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 78/208 (37%), Gaps = 30/208 (14%)
Query: 95 LSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPXXXXXXXXXXXXXXXXX 154
L+SL TL L NW + L+KL+EL LR N ++
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE--------------------- 160
Query: 155 XXTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNL 214
+IP+ FN LD + EGL LK L + K +P NL
Sbjct: 161 ----SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NL 214
Query: 215 WHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPE-ELGNLAELEMLVL 273
GL +S N F P L+ LK L++ N+ + I LA L L L
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV-MNSQVSLIERNAFDGLASLVELNL 273
Query: 274 TSNLLTGAIPASIFNLSSMLTALDFTNN 301
N L+ ++P +F L L +N
Sbjct: 274 AHNNLS-SLPHDLFTPLRYLVELHLHHN 300
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 174 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSAS---LSFNQF 230
L +N+L + PDD L L L++ N+ +P + +GL S L N+
Sbjct: 133 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS-VPERAF--RGLHSLDRLLLHQNRV 188
Query: 231 TGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSN 276
P +L RL +LYL NNL E L L L+ L L N
Sbjct: 189 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 174 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSAS---LSFNQF 230
L +N+L + PDD L L L++ N+ +P + +GL S L N+
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS-VPERAF--RGLHSLDRLLLHQNRV 189
Query: 231 TGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSN 276
P +L RL +LYL NNL E L L L+ L L N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 24/149 (16%)
Query: 70 YGNRVTSLTIPDLGLTGTIPSYLGNLS------SLQTLVLSHNWF-----SGTIPREIGN 118
+ + SL DL + YL N + SLQTLVLS N +G I + N
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388
Query: 119 LTKLKELRLRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDFSN 178
LT L R ++ + T IP ++ LD SN
Sbjct: 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-CIPQTL-------EVLDVSN 440
Query: 179 NSLTGSFPDDMCEGLPRLKGLYVSYNQFK 207
N+L D LPRL+ LY+S N+ K
Sbjct: 441 NNL-----DSFSLFLPRLQELYISRNKLK 464
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 217 CKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSN 276
C A L + +P + TRL L LG N + +E + LE L L N
Sbjct: 9 CSAQDRAVLCHRKRFVAVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNEN 66
Query: 277 LLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNL 336
+++ P + NL ++ T L +N L P GL L L +S N+
Sbjct: 67 IVSAVEPGAFNNLFNLRT-LGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI-------- 116
Query: 337 WHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGID 396
+ L + + +DL N LKSL +G N+L+ + L +LE L ++
Sbjct: 117 -------VILLDY------MFQDLYN---LKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160
Query: 397 QSNLVGFVPDTILNISTLKILSL 419
+ NL + + ++ L +L L
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRL 183
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 24/149 (16%)
Query: 70 YGNRVTSLTIPDLGLTGTIPSYLGNLS------SLQTLVLSHNWF-----SGTIPREIGN 118
+ + SL DL + YL N + SLQTLVLS N +G I + N
Sbjct: 355 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 414
Query: 119 LTKLKELRLRYNKLQGEIPXXXXXXXXXXXXXXXXXXXTGTIPASIFNLSSISTGLDFSN 178
LT L R ++ + T IP ++ LD SN
Sbjct: 415 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-CIPQTL-------EVLDVSN 466
Query: 179 NSLTGSFPDDMCEGLPRLKGLYVSYNQFK 207
N+L D LPRL+ LY+S N+ K
Sbjct: 467 NNL-----DSFSLFLPRLQELYISRNKLK 490
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 218 KGLSSA---SLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGN----LAELEM 270
+GLSS L +NQF L L+ L L NL G + GN L LEM
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEM 133
Query: 271 LVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDD 310
LVL N + PAS F LD T N + +D
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 107/261 (40%), Gaps = 37/261 (14%)
Query: 167 LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLS 226
+S +T LD NN ++ DD +GL L L + N+ H K S
Sbjct: 52 ISPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISK------IHEKAFSP---- 100
Query: 227 FNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEEL-GNLAELEMLVLTSNLLTGAIPAS 285
L +L+ LY+ N+L+ EIP L +L EL + + +P
Sbjct: 101 --------------LRKLQKLYISKNHLV-EIPPNLPSSLVELRI----HDNRIRKVPKG 141
Query: 286 IFNLSSMLTALDFTNNSLTGS-FPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLST 344
+F+ + ++ N L S F GL +L L +S + G IP +L + L+
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNE 197
Query: 345 VSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFV 404
+ L N+ DL +KL L LG N + + L L L +D +N + V
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD-NNKLSRV 256
Query: 405 PDTILNISTLKILSLFNNTFS 425
P + ++ L+++ L N +
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT 277
>pdb|3IYH|A Chain A, P22 Procapsid Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYH|B Chain B, P22 Procapsid Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYH|C Chain C, P22 Procapsid Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYH|D Chain D, P22 Procapsid Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYH|E Chain E, P22 Procapsid Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYH|F Chain F, P22 Procapsid Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYI|A Chain A, P22 Expanded Head Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYI|B Chain B, P22 Expanded Head Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYI|C Chain C, P22 Expanded Head Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYI|D Chain D, P22 Expanded Head Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYI|E Chain E, P22 Expanded Head Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYI|F Chain F, P22 Expanded Head Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|3IYI|G Chain G, P22 Expanded Head Coat Protein Structures Reveal A Novel
Mechanism For Capsid Maturation: Stability Without
Auxiliary Proteins Or Chemical Cross-Links
pdb|2XYY|A Chain A, De Novo Model Of Bacteriophage P22 Procapsid Coat Protein
pdb|2XYY|B Chain B, De Novo Model Of Bacteriophage P22 Procapsid Coat Protein
pdb|2XYY|C Chain C, De Novo Model Of Bacteriophage P22 Procapsid Coat Protein
pdb|2XYY|D Chain D, De Novo Model Of Bacteriophage P22 Procapsid Coat Protein
pdb|2XYY|E Chain E, De Novo Model Of Bacteriophage P22 Procapsid Coat Protein
pdb|2XYY|F Chain F, De Novo Model Of Bacteriophage P22 Procapsid Coat Protein
pdb|2XYY|G Chain G, De Novo Model Of Bacteriophage P22 Procapsid Coat Protein
pdb|2XYZ|A Chain A, De Novo Model Of Bacteriophage P22 Virion Coat Protein
pdb|2XYZ|B Chain B, De Novo Model Of Bacteriophage P22 Virion Coat Protein
pdb|2XYZ|C Chain C, De Novo Model Of Bacteriophage P22 Virion Coat Protein
pdb|2XYZ|D Chain D, De Novo Model Of Bacteriophage P22 Virion Coat Protein
pdb|2XYZ|E Chain E, De Novo Model Of Bacteriophage P22 Virion Coat Protein
pdb|2XYZ|F Chain F, De Novo Model Of Bacteriophage P22 Virion Coat Protein
pdb|2XYZ|G Chain G, De Novo Model Of Bacteriophage P22 Virion Coat Protein
Length = 430
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 71 GNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWF--SGTIPREIG 117
G + TS +IPD+GL G I + G++S+L L W+ + T P IG
Sbjct: 375 GMKTTSFSIPDVGLNG-IFATQGDISTLSGLCRIALWYGVNATRPEAIG 422
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP+L+ LY+ N+ L L + SL NQ + +P L LT+L++LYL N
Sbjct: 128 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 253 NL 254
++
Sbjct: 184 HI 185
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 92 LGNLSSLQTLVLSHNWF-SGTIPREIGNLTKLKELRLRYNKLQG 134
+G+L +L+ L ++HN S +P NLT L+ L L NK+Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 92 LGNLSSLQTLVLSHNWF-SGTIPREIGNLTKLKELRLRYNKLQG 134
+G+L +L+ L ++HN S +P NLT L+ L L NK+Q
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 188 DMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSL 247
D+ EGL L+ LY+++N P H L SL+ N+ T DL L+ L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531
Query: 248 YLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSF 307
+ N L+ P+ +L+ L+ +T N LS+ + L+ TN ++ G
Sbjct: 532 DISRNQLLAPNPDVFVSLSVLD---ITHNKFICEC-----ELSTFINWLNHTNVTIAGPP 583
Query: 308 PDDTC 312
D C
Sbjct: 584 ADIYC 588
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 92 LGNLSSLQTLVLSHNWF-SGTIPREIGNLTKLKELRLRYNKLQG 134
+G+L +L+ L ++HN S +P NLT L+ L L NK+Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 92 LGNLSSLQTLVLSHNWF-SGTIPREIGNLTKLKELRLRYNKLQ 133
+G+L +L+ L ++HN S +P NLT L+ L L NK+Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 92 LGNLSSLQTLVLSHNWF-SGTIPREIGNLTKLKELRLRYNKLQG 134
+G+L +L+ L ++HN S +P NLT L+ L L NK+Q
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 92 LGNLSSLQTLVLSHNWF-SGTIPREIGNLTKLKELRLRYNKLQG 134
+G+L +L+ L ++HN S +P NLT L+ L L NK+Q
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP+L+ LY+ N+ L L + SL NQ + +P L LT+L++LYL N
Sbjct: 151 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 253 NL 254
++
Sbjct: 207 HI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP+L+ LY+ N+ L L + SL NQ + +P L LT+L++LYL N
Sbjct: 151 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 253 NL 254
++
Sbjct: 207 HI 208
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP+L+ LY+ N+ L L + SL NQ + +P L LT+L++LYL N
Sbjct: 151 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 253 NL 254
++
Sbjct: 207 HI 208
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 92 LGNLSSLQTLVLSHNWF-SGTIPREIGNLTKLKELRLRYNKLQG 134
+G+L +L+ L ++HN S +P NLT L+ L L NK+Q
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP+L+ LY+ N+ L L + SL NQ + +P L LT+L++LYL N
Sbjct: 153 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208
Query: 253 NL 254
++
Sbjct: 209 HI 210
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 92 LGNLSSLQTLVLSHNWF-SGTIPREIGNLTKLKELRLRYNKLQG 134
+G+L +L+ L ++HN S +P NLT L+ L L NK+Q
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP+L+ LY+ N+ L L + SL NQ + +P L LT+L++LYL N
Sbjct: 131 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 253 NL 254
++
Sbjct: 187 HI 188
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 193 LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFN 252
LP+L+ LY+ N+ L L + SL NQ + +P L LT+L++LYL N
Sbjct: 133 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 253 NL 254
++
Sbjct: 189 HI 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,967,495
Number of Sequences: 62578
Number of extensions: 726138
Number of successful extensions: 2115
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1444
Number of HSP's gapped (non-prelim): 479
length of query: 729
length of database: 14,973,337
effective HSP length: 106
effective length of query: 623
effective length of database: 8,340,069
effective search space: 5195862987
effective search space used: 5195862987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)