Query 045487
Match_columns 729
No_of_seqs 435 out of 4494
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 02:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-66 4.1E-71 610.5 45.7 603 1-696 1-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.9E-58 1.7E-62 537.5 38.2 537 96-721 69-606 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 3E-40 6.6E-45 312.5 -15.5 482 194-722 45-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 1.8E-36 3.8E-41 299.9 5.9 370 97-496 79-449 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 6.2E-40 1.3E-44 310.4 -17.9 494 98-698 47-541 (565)
6 KOG4194 Membrane glycoprotein 100.0 3E-36 6.6E-41 298.3 6.6 389 293-717 54-447 (873)
7 KOG0618 Serine/threonine phosp 100.0 6.8E-36 1.5E-40 311.8 -1.5 507 125-719 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 4.8E-34 1E-38 298.1 -4.1 475 184-720 12-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 8.5E-32 1.8E-36 268.7 -4.8 363 318-698 9-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.5E-31 5.4E-36 265.4 -5.7 338 73-423 33-373 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2.7E-22 5.9E-27 236.1 27.5 346 260-648 552-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 5.2E-22 1.1E-26 233.7 29.3 340 310-672 552-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 5.4E-24 1.2E-28 202.4 -4.0 203 510-719 268-498 (498)
14 KOG4237 Extracellular matrix p 99.8 6.2E-23 1.3E-27 195.3 -2.8 415 219-671 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.2E-19 9.1E-24 193.4 16.5 266 388-706 201-466 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 6.3E-19 1.4E-23 192.0 17.2 266 364-682 201-466 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 1.3E-19 2.8E-24 186.1 4.4 240 482-721 47-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 2E-17 4.3E-22 181.8 17.5 335 24-425 59-428 (754)
19 PRK15370 E3 ubiquitin-protein 99.7 2.3E-17 5E-22 181.2 13.8 247 412-698 178-428 (754)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.8E-18 8.2E-23 175.2 2.8 254 467-723 3-292 (319)
21 KOG0617 Ras suppressor protein 99.7 1.4E-18 3E-23 146.4 -3.6 160 562-727 30-190 (264)
22 KOG0617 Ras suppressor protein 99.6 7E-18 1.5E-22 142.2 -3.2 157 92-255 29-186 (264)
23 PLN03150 hypothetical protein; 99.5 5.6E-14 1.2E-18 154.5 11.2 139 22-167 366-513 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 2.1E-13 4.5E-18 137.0 -4.5 195 515-720 74-271 (722)
25 KOG1909 Ran GTPase-activating 99.2 3.4E-12 7.4E-17 121.1 1.3 190 508-697 84-310 (382)
26 KOG1909 Ran GTPase-activating 99.1 8.7E-12 1.9E-16 118.4 0.5 237 482-721 26-310 (382)
27 PLN03150 hypothetical protein; 99.1 1.3E-10 2.9E-15 128.0 9.1 110 590-699 419-529 (623)
28 KOG1259 Nischarin, modulator o 99.1 2.3E-11 4.9E-16 112.7 2.1 130 588-723 283-413 (490)
29 KOG1259 Nischarin, modulator o 99.1 3.3E-11 7.2E-16 111.6 1.6 134 561-700 280-414 (490)
30 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3.1E-15 103.7 5.6 125 562-691 16-146 (175)
31 COG4886 Leucine-rich repeat (L 99.1 2.1E-10 4.5E-15 121.1 7.7 152 566-724 141-292 (394)
32 PF14580 LRR_9: Leucine-rich r 99.1 1.5E-10 3.2E-15 103.6 5.2 126 586-716 16-147 (175)
33 KOG4658 Apoptotic ATPase [Sign 99.0 1.6E-10 3.5E-15 129.8 5.7 83 95-179 544-628 (889)
34 KOG3207 Beta-tubulin folding c 99.0 4.6E-11 9.9E-16 116.8 1.1 88 437-529 120-210 (505)
35 KOG0532 Leucine-rich repeat (L 99.0 1.6E-11 3.5E-16 123.7 -3.1 175 94-304 73-247 (722)
36 COG4886 Leucine-rich repeat (L 99.0 5.2E-10 1.1E-14 118.1 6.2 193 100-304 97-290 (394)
37 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.3E-15 114.2 0.7 211 409-626 118-339 (505)
38 KOG4658 Apoptotic ATPase [Sign 98.9 8.4E-10 1.8E-14 124.1 5.7 151 94-273 521-675 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 3.9E-09 8.5E-14 77.4 3.0 58 615-672 3-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 7.1E-09 1.5E-13 76.0 3.5 59 662-720 2-60 (61)
41 KOG0531 Protein phosphatase 1, 98.6 3.4E-09 7.4E-14 111.9 -1.8 245 437-726 71-322 (414)
42 KOG0531 Protein phosphatase 1, 98.6 4.6E-09 1E-13 110.9 -1.5 170 542-722 119-290 (414)
43 KOG1859 Leucine-rich repeat pr 98.5 2.1E-09 4.5E-14 111.7 -6.3 126 591-722 166-292 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.5 3.3E-09 7.2E-14 98.6 -5.6 180 439-624 186-374 (419)
45 KOG1859 Leucine-rich repeat pr 98.5 1.3E-09 2.8E-14 113.2 -9.3 127 566-698 165-292 (1096)
46 PF08263 LRRNT_2: Leucine rich 98.5 1.8E-07 3.8E-12 62.4 4.0 40 27-68 2-43 (43)
47 KOG4341 F-box protein containi 98.4 6E-09 1.3E-13 101.7 -6.2 253 460-716 188-459 (483)
48 KOG2120 SCF ubiquitin ligase, 98.4 1.8E-08 3.9E-13 93.8 -3.9 179 539-719 183-373 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.3 2.4E-07 5.2E-12 85.3 2.2 241 460-722 28-316 (388)
50 COG5238 RNA1 Ran GTPase-activa 98.3 2.2E-07 4.8E-12 85.6 1.6 249 437-699 29-317 (388)
51 KOG4579 Leucine-rich repeat (L 98.1 1.9E-07 4.1E-12 76.8 -2.3 117 562-682 50-167 (177)
52 KOG2982 Uncharacterized conser 98.1 1.1E-06 2.5E-11 82.1 1.3 187 240-427 69-264 (418)
53 KOG4341 F-box protein containi 98.0 1.4E-07 3.1E-12 92.3 -5.4 89 484-576 292-383 (483)
54 PRK15386 type III secretion pr 98.0 1.4E-05 2.9E-10 80.9 8.0 132 542-696 53-188 (426)
55 KOG4579 Leucine-rich repeat (L 98.0 4.7E-07 1E-11 74.5 -2.4 138 566-707 28-168 (177)
56 KOG2982 Uncharacterized conser 98.0 2.5E-06 5.3E-11 79.9 1.8 205 484-717 69-287 (418)
57 PRK15386 type III secretion pr 98.0 2.5E-05 5.4E-10 79.1 8.2 137 512-671 48-187 (426)
58 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.7E-10 53.5 3.4 37 120-157 1-37 (44)
59 PF12799 LRR_4: Leucine Rich r 97.7 3.9E-05 8.5E-10 51.1 3.1 17 633-649 20-36 (44)
60 KOG1644 U2-associated snRNP A' 97.7 8.2E-05 1.8E-09 66.1 5.7 105 566-672 43-151 (233)
61 KOG3665 ZYG-1-like serine/thre 97.7 1.4E-05 2.9E-10 88.3 1.0 136 516-653 122-266 (699)
62 KOG3665 ZYG-1-like serine/thre 97.7 9.9E-06 2.1E-10 89.4 -0.2 127 588-716 147-282 (699)
63 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.5E-09 65.2 6.2 126 568-697 22-152 (233)
64 PF13306 LRR_5: Leucine rich r 97.6 0.00018 3.9E-09 62.3 6.9 121 585-711 8-128 (129)
65 PF13306 LRR_5: Leucine rich r 97.4 0.00033 7.2E-09 60.6 6.7 122 560-687 7-128 (129)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00062 1.3E-08 63.5 3.0 87 563-651 41-130 (260)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00085 1.8E-08 62.6 2.5 110 608-719 38-153 (260)
68 KOG1947 Leucine rich repeat pr 96.7 0.00022 4.8E-09 77.9 -2.2 113 410-527 186-306 (482)
69 KOG1947 Leucine rich repeat pr 96.6 0.00019 4.1E-09 78.4 -3.3 237 437-699 187-441 (482)
70 KOG2123 Uncharacterized conser 96.2 0.00026 5.6E-09 66.1 -4.2 79 440-527 21-99 (388)
71 KOG2123 Uncharacterized conser 95.9 0.00049 1.1E-08 64.4 -3.8 100 612-715 18-123 (388)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0078 1.7E-07 33.1 0.8 19 687-706 2-20 (22)
73 KOG4308 LRR-containing protein 95.0 0.00017 3.6E-09 76.3 -11.9 89 488-578 89-185 (478)
74 KOG4308 LRR-containing protein 94.8 0.0002 4.3E-09 75.7 -11.8 83 518-601 89-184 (478)
75 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.4E-07 32.5 0.7 19 122-141 2-20 (22)
76 KOG0473 Leucine-rich repeat pr 91.7 0.0053 1.2E-07 56.1 -6.1 85 70-157 40-124 (326)
77 PF13504 LRR_7: Leucine rich r 91.7 0.12 2.6E-06 26.2 1.4 13 145-157 2-14 (17)
78 KOG3864 Uncharacterized conser 89.8 0.047 1E-06 49.2 -2.0 80 543-622 103-185 (221)
79 KOG3864 Uncharacterized conser 89.6 0.046 9.9E-07 49.3 -2.1 35 565-599 151-186 (221)
80 PF13516 LRR_6: Leucine Rich r 88.6 0.12 2.6E-06 29.0 -0.2 19 685-703 2-20 (24)
81 smart00370 LRR Leucine-rich re 87.9 0.45 9.8E-06 27.3 2.0 19 144-163 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 87.9 0.45 9.8E-06 27.3 2.0 19 144-163 2-20 (26)
83 KOG0473 Leucine-rich repeat pr 86.6 0.024 5.2E-07 52.0 -5.8 84 611-697 40-123 (326)
84 smart00369 LRR_TYP Leucine-ric 86.4 0.67 1.5E-05 26.5 2.1 13 638-650 3-15 (26)
85 smart00370 LRR Leucine-rich re 86.4 0.67 1.5E-05 26.5 2.1 13 638-650 3-15 (26)
86 smart00364 LRR_BAC Leucine-ric 71.5 2.6 5.6E-05 24.1 1.2 17 709-726 2-18 (26)
87 smart00365 LRR_SD22 Leucine-ri 64.0 6.2 0.00013 22.7 1.8 12 662-673 3-14 (26)
88 smart00368 LRR_RI Leucine rich 59.6 4.4 9.6E-05 23.7 0.7 13 638-650 3-15 (28)
89 KOG4242 Predicted myosin-I-bin 54.1 40 0.00086 35.3 6.7 60 615-674 415-481 (553)
90 KOG4242 Predicted myosin-I-bin 45.9 98 0.0021 32.6 8.0 21 218-238 165-185 (553)
91 smart00367 LRR_CC Leucine-rich 42.2 18 0.0004 20.5 1.4 15 685-699 2-17 (26)
92 PRK09718 hypothetical protein; 30.5 92 0.002 33.0 5.2 13 661-673 228-240 (512)
93 KOG3763 mRNA export factor TAP 29.3 29 0.00062 37.1 1.4 66 611-676 216-285 (585)
94 KOG3763 mRNA export factor TAP 21.7 60 0.0013 34.8 2.1 37 460-496 216-254 (585)
95 PRK09718 hypothetical protein; 21.3 1.4E+02 0.0031 31.6 4.6 11 615-625 230-240 (512)
96 KOG1665 AFH1-interacting prote 20.4 80 0.0017 29.3 2.3 13 267-279 197-209 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-66 Score=610.46 Aligned_cols=603 Identities=35% Similarity=0.556 Sum_probs=394.6
Q ss_pred CCCCCCchHHHHHHHH-HHHHHhccCCHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCccceeEeeCCCCcEEEEEc
Q 045487 1 MGRSDPDLFVPYLILF-SVIVAAAANISRDQDALLSVKAHIINDNPRNILAQNWTSNTSVCSWMGITCDIYGNRVTSLTI 79 (729)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l 79 (729)
|+||-|..-..+++++ ++++-.+...++|+.+|++||+++ .+|.+.+ .+|....+||.|.||+|+. .++|+.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~-~~w~~~~~~c~w~gv~c~~-~~~v~~L~L 76 (968)
T PLN00113 1 MAKKGPQHCPYLIFMLFFLFLNFSMLHAEELELLLSFKSSI--NDPLKYL-SNWNSSADVCLWQGITCNN-SSRVVSIDL 76 (968)
T ss_pred CCCCCCCCCChHHHHHHHHHHHccCCCHHHHHHHHHHHHhC--CCCcccC-CCCCCCCCCCcCcceecCC-CCcEEEEEe
Confidence 8888776543322222 222222333567899999999999 5676666 8998888999999999985 569999999
Q ss_pred CCCCCccccCCCCCCCCCCCEEeCCCccCcccCCcccc-CCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCC
Q 045487 80 PDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIG-NLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTG 158 (729)
Q Consensus 80 ~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 158 (729)
+++.+.|.+++.+..+++|++|+|++|.+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+.+
T Consensus 77 ~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~ 154 (968)
T PLN00113 77 SGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSG 154 (968)
T ss_pred cCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccc
Confidence 99999999988999999999999999999888887654 899999999999999888775 568899999999999887
Q ss_pred CCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccc
Q 045487 159 TIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDL 238 (729)
Q Consensus 159 ~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 238 (729)
.+|..++++ ++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+
T Consensus 155 ~~p~~~~~l--------------------------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 208 (968)
T PLN00113 155 EIPNDIGSF--------------------------SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL 208 (968)
T ss_pred cCChHHhcC--------------------------CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH
Confidence 888777766 788888888888877888888888888888888888877788888
Q ss_pred cCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCC
Q 045487 239 GNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRL 318 (729)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L 318 (729)
+++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+..+++ |+.|++++|.+.+.+|..+. .+++|
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~-~l~~L 286 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN-LQYLFLYQNKLSGPIPPSIF-SLQKL 286 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC-CCEEECcCCeeeccCchhHh-hccCc
Confidence 88888888888888888778888888888888888888777777777666665 66666666666554444332 23345
Q ss_pred cEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccc
Q 045487 319 KGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQS 398 (729)
Q Consensus 319 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 398 (729)
++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 55555555555444544555555555555555554444444444444555555444444444444444444444444444
Q ss_pred cceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceecc
Q 045487 399 NLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLI 478 (729)
Q Consensus 399 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 478 (729)
.+.+..|..+.. +++|+.+++++|.+.+.+|..+..+++|+.+++++|.+++..
T Consensus 367 ~l~~~~p~~~~~--------------------------~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 367 NLTGEIPEGLCS--------------------------SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred eeEeeCChhHhC--------------------------cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 444443333333 344444444444444444444555555555555555555555
Q ss_pred CccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCC
Q 045487 479 PEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIP 558 (729)
Q Consensus 479 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 558 (729)
|..+..+++|+.+++++|.+.+. .+..+..+++|+.|++++|.+ .+.+|
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~n~~-------------------------~~~~p 469 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGR------INSRKWDMPSLQMLSLARNKF-------------------------FGGLP 469 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCc------cChhhccCCCCcEEECcCcee-------------------------eeecC
Confidence 54444444444444444443332 112222333333333333333 33333
Q ss_pred ccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCC
Q 045487 559 KEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNS 638 (729)
Q Consensus 559 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 638 (729)
..+ ..++|+.|++++|++++..|..+.++++|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++
T Consensus 470 ~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 548 (968)
T PLN00113 470 DSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548 (968)
T ss_pred ccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence 322 2356677777777777666666666777777777777777666666666777777777777777667766776777
Q ss_pred CCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCc
Q 045487 639 LRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNR 696 (729)
Q Consensus 639 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~ 696 (729)
|++|++++|++++.+|..+..+++|+.|++++|++.+.+|.. +.+..+....+.+|.
T Consensus 549 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred CCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 777777777777667776766677777777777776666643 223334444444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.9e-58 Score=537.54 Aligned_cols=537 Identities=35% Similarity=0.536 Sum_probs=395.0
Q ss_pred CCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCccccc-CCCCCCEEEccCCcCCCCCCccccccccccccc
Q 045487 96 SSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELG-NLAELEVLVLNNNLLTGTIPASIFNLSSISTGL 174 (729)
Q Consensus 96 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L 174 (729)
.+++.|+|+++.+.+.++..+..+++|++|+|++|.+.+.+|..+. ++++|++|++++|.+++.+|.. .+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~l------- 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SI------- 139 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc--cc-------
Confidence 3677888888888777777788888888888888888777776654 7788888888877776555531 11
Q ss_pred cccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcC
Q 045487 175 DFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNL 254 (729)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 254 (729)
++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus 140 -------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 140 -------------------PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred -------------------CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 6777777777777777777777777777777777777666676677777777777777776
Q ss_pred cccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCC
Q 045487 255 IGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPN 334 (729)
Q Consensus 255 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 334 (729)
.+.+|..++++++|++|++++|.+.+.+|..+..+ ++|++|++++|.+.+..|.
T Consensus 201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--------------------------~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL--------------------------TSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred cCcCChHHcCcCCccEEECcCCccCCcCChhHhcC--------------------------CCCCEEECcCceeccccCh
Confidence 66666666666666666666666655555444333 2355555555555555566
Q ss_pred CCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCC
Q 045487 335 NLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTL 414 (729)
Q Consensus 335 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 414 (729)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 66666677777777766666666666666666666666666666666666666666666666666555555555555555
Q ss_pred cEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEecc
Q 045487 415 KILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLR 494 (729)
Q Consensus 415 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 494 (729)
+.|++++|. +.+.+|..+..+++|+.+++++|.+.+..|..+..+++|+.++++
T Consensus 335 ~~L~L~~n~--------------------------l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 335 QVLQLWSNK--------------------------FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred CEEECcCCC--------------------------CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 555555544 444444555555566666666666666666666666666666666
Q ss_pred CCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccC
Q 045487 495 RNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGD 574 (729)
Q Consensus 495 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 574 (729)
+|.+.+. ++..+..+++|+.+++++|.+.+..|..+...+ .++.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 389 ~n~l~~~------~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 389 SNSLEGE------IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP-LVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEeccc------CCHHHhCCCCCCEEECcCCEeeeECChhHhcCC-CCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 6666554 335667788999999999999988888887776 899999999999888888888889999999999
Q ss_pred CcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCC
Q 045487 575 NNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIP 654 (729)
Q Consensus 575 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 654 (729)
|++.+.+|..+ ..++|+.|++++|++++..|..+..+++|+.|++++|.+.+.+|..+.++++|++|++++|.+++.+|
T Consensus 462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 99888777665 35789999999999988888888889999999999999998899889899999999999999999999
Q ss_pred hhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCcc
Q 045487 655 STFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKL 721 (729)
Q Consensus 655 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l 721 (729)
..|..+++|+.|+|++|++++.+|..+.++++|+.|++++|++.+.+|.. +.+..+....+.+|+.
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNID 606 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcc
Confidence 99999999999999999999899988988999999999999999888865 4455566667777763
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3e-40 Score=312.48 Aligned_cols=482 Identities=28% Similarity=0.396 Sum_probs=287.8
Q ss_pred CCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEe
Q 045487 194 PRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVL 273 (729)
Q Consensus 194 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 273 (729)
..|+.+.+++|.+. .+.+.+.++..|.++++.+|+.+ ..|++++.+..++.++.+.|++. .+|..+....+|..+++
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 56666777777665 44445666666777777777666 45666666667777777766665 55666666667777777
Q ss_pred ecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccc
Q 045487 274 TSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFT 353 (729)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~ 353 (729)
+.|.+. .+|++++.+.. ++.++..+|++. ..|..++. +.++..+++.+|.+....+..+. ++.|+++|.-.|-++
T Consensus 122 s~n~~~-el~~~i~~~~~-l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLD-LEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE 196 (565)
T ss_pred ccccee-ecCchHHHHhh-hhhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh
Confidence 776666 66666666666 666666666666 55554443 22355556666655543333333 555555555555554
Q ss_pred cccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccc
Q 045487 354 GRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKN 433 (729)
Q Consensus 354 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 433 (729)
.+|+.++.+.+|..|++..|++. .+| .|.++..|++++++.|.+.-...+...+++++..||+++|++. +.|....
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 44555555555555555555554 444 4555555555555555543322222335555555555555554 3344333
Q ss_pred cCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccC--CCcEEe-------ccCCcccCCc--
Q 045487 434 LIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLR--NLKRLG-------LRRNYLTSST-- 502 (729)
Q Consensus 434 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~-------l~~~~l~~~~-- 502 (729)
. +.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+...-.+.+..-+ -|++|. ++..+-....
T Consensus 273 l--LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 273 L--LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred H--hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 3 455555555555554 234444444 455555555544211111110000 000000 0000000000
Q ss_pred chhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCcc-cc--CCCCccEEEccCCcccc
Q 045487 503 SELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKE-IG--SLINLTTLGLGDNNLSG 579 (729)
Q Consensus 503 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~~~ 579 (729)
+.....+....... +.+.|++++-+++ .+|.. |. .-.-.+..++++|++.
T Consensus 349 t~~~~~~~~~~~~i-------------------------~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~- 401 (565)
T KOG0472|consen 349 TLPSESFPDIYAII-------------------------TTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC- 401 (565)
T ss_pred CCCCCcccchhhhh-------------------------hhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-
Confidence 00000001111222 4445555544433 23322 21 1123677889999887
Q ss_pred cCCccccccccCce-EecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhh
Q 045487 580 SLPMTLGRLKKLQG-LYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFW 658 (729)
Q Consensus 580 ~~~~~l~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 658 (729)
.+|..+..++.+.+ +.+++|.+. .+|..++.+++|..|++++|.+. .+|..+..+..|++|+++.|++. ..|.++.
T Consensus 402 elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y 478 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY 478 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh
Confidence 67777777766655 445555554 77888888999999999988887 77888888888999999999886 5888888
Q ss_pred ccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccc
Q 045487 659 NLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 659 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~ 722 (729)
.+..++.+-.++|++....|..+.++.+|..|||.+|.+. .+|..+++|.+|++|++.||+++
T Consensus 479 ~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 479 ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888888878888888777777889999999999999988 78888999999999999999987
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-36 Score=299.94 Aligned_cols=370 Identities=24% Similarity=0.268 Sum_probs=306.3
Q ss_pred CCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccc
Q 045487 97 SLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDF 176 (729)
Q Consensus 97 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l 176 (729)
.-++|++++|++...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|...-.+.+..
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~---------- 147 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSA---------- 147 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHh----------
Confidence 5677888888888877888888888888888888888 77876667777888888888777322223333
Q ss_pred cccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcc
Q 045487 177 SNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIG 256 (729)
Q Consensus 177 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 256 (729)
++.|+.|||+.|.++..--..+..-.++++|++++|.++......|..+.+|..|.|+.|+++.
T Consensus 148 ----------------l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 148 ----------------LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred ----------------HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 3788888888888774444456666788888888888887777788888889999999999887
Q ss_pred cCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCC
Q 045487 257 EIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNL 336 (729)
Q Consensus 257 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 336 (729)
..+..|.++++|+.|+|..|++.-.--..+..+++ |+.|.+..|.+. .+.+..|-.+.+++.|+++.|+++..-..|+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S-l~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS-LQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchh-hhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccc
Confidence 77778888999999999988886322334556666 899999999888 7778888888889999999999988888899
Q ss_pred CCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcE
Q 045487 337 WHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKI 416 (729)
Q Consensus 337 ~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 416 (729)
.+++.|+.|++++|.|....+..+..+++|++|++++|.++...+..|..+..|+.|++++|.+.......|..+++|++
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 99999999999999999888888888999999999999999888888999999999999999998877778889999999
Q ss_pred EECcCccCcccCCC-ccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccC
Q 045487 417 LSLFNNTFSGNLPS-SKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRR 495 (729)
Q Consensus 417 L~l~~n~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 495 (729)
||+++|.+.+.+.. ...+.+++.|+.|.+.+|++..+....+.++..|+.|++.+|.+....+..|..+ .|++|.+..
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 99999998876554 3346779999999999999987777788899999999999999998889999988 888888765
Q ss_pred C
Q 045487 496 N 496 (729)
Q Consensus 496 ~ 496 (729)
-
T Consensus 449 s 449 (873)
T KOG4194|consen 449 S 449 (873)
T ss_pred c
Confidence 4
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.2e-40 Score=310.37 Aligned_cols=494 Identities=28% Similarity=0.398 Sum_probs=265.0
Q ss_pred CCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCcccccccccccccccc
Q 045487 98 LQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFS 177 (729)
Q Consensus 98 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~ 177 (729)
++.+++++|.+. .+...+.++..|.+|++++|.+. .+|++++.+..++.++.++|.+. .+|..++.+
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~---------- 113 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSL---------- 113 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhh----------
Confidence 455566666554 34445666666677777777666 66666777666777777766666 666666555
Q ss_pred ccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCccc
Q 045487 178 NNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGE 257 (729)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 257 (729)
.+|++++.++|.+. .+|+.++.+-.|+.++..+|+++ ..|+++.++.+|..+++.+|++...
T Consensus 114 ----------------~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l 175 (565)
T KOG0472|consen 114 ----------------ISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL 175 (565)
T ss_pred ----------------hhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC
Confidence 66666667666665 56666777777777777777766 5666677777777777777777644
Q ss_pred CChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCC
Q 045487 258 IPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLW 337 (729)
Q Consensus 258 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 337 (729)
.|+.+. ++.|++|+...|.++ .+|+.++.+.+ |+.|++..|++. .+| .|.+++.|+++.++.|++.........
T Consensus 176 ~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~-L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~ 249 (565)
T KOG0472|consen 176 PENHIA-MKRLKHLDCNSNLLE-TLPPELGGLES-LELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPAEHLK 249 (565)
T ss_pred CHHHHH-HHHHHhcccchhhhh-cCChhhcchhh-hHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHHHHhc
Confidence 444343 777777777777665 77777777666 777777777665 455 234455566666666655533333344
Q ss_pred CCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEE
Q 045487 338 HCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKIL 417 (729)
Q Consensus 338 ~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 417 (729)
.++++..||+..|++. .+|..++.+.+|..|++++|.++ .+|..++++ .|+.|.+.+|.+...-.+.+.. .
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~-g----- 320 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISK-G----- 320 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcc-c-----
Confidence 5555555555555555 45555555555555555555554 344455555 5555555555443221111100 0
Q ss_pred ECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCc
Q 045487 418 SLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNY 497 (729)
Q Consensus 418 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 497 (729)
.... ++.|+. .+..-.+... .-+.. ..-+. ..+.. .......+.+.|++++-+
T Consensus 321 ------------T~~v---LKyLrs-~~~~dglS~s---e~~~e---~~~t~----~~~~~-~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 321 ------------TQEV---LKYLRS-KIKDDGLSQS---EGGTE---TAMTL----PSESF-PDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ------------HHHH---HHHHHH-hhccCCCCCC---ccccc---ccCCC----CCCcc-cchhhhhhhhhhcccccc
Confidence 0000 001110 0000000000 00000 00000 00000 112345566777777777
Q ss_pred ccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCc-cEEEccCCc
Q 045487 498 LTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINL-TTLGLGDNN 576 (729)
Q Consensus 498 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~ 576 (729)
++..++++++... -.-...++++.|++. ++|..+.. +..+ +.+.+++|.
T Consensus 374 lt~VPdEVfea~~----~~~Vt~VnfskNqL~-elPk~L~~-------------------------lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 374 LTLVPDEVFEAAK----SEIVTSVNFSKNQLC-ELPKRLVE-------------------------LKELVTDLVLSNNK 423 (565)
T ss_pred cccCCHHHHHHhh----hcceEEEecccchHh-hhhhhhHH-------------------------HHHHHHHHHhhcCc
Confidence 7777666544221 122456666666654 23333322 2222 223334433
Q ss_pred ccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChh
Q 045487 577 LSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPST 656 (729)
Q Consensus 577 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 656 (729)
+. -+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|+|. ..|.++..+..++.+-.++|.+....|++
T Consensus 424 is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 424 IS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred cc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHH
Confidence 33 44444555555566666555554 44555555555666666666555 55555555555555555555555555555
Q ss_pred hhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccc
Q 045487 657 FWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 657 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~ 698 (729)
+..+..|+.|||.+|.+. .+|..++++++|++|++++|+|.
T Consensus 501 l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 556666666666666655 45555666666666666666665
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3e-36 Score=298.29 Aligned_cols=389 Identities=22% Similarity=0.238 Sum_probs=227.5
Q ss_pred cceEEcccCcccccCCchhh--ccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEE
Q 045487 293 LTALDFTNNSLTGSFPDDTC--HGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLH 370 (729)
Q Consensus 293 L~~L~l~~~~l~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~ 370 (729)
-.-|+++++.+. .+..... -.++.-+.|++++|.+....+..|.++++|+++++.+|.++ .+|.......+++.|+
T Consensus 54 ~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence 455666666554 2211111 01223455777777766666666666777777777776666 5555545555567777
Q ss_pred eeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcC
Q 045487 371 LGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNF 450 (729)
Q Consensus 371 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 450 (729)
+.+|.+...-.+.+..++.|+.|+++.|.+.......|..-.++++|++++|.++.. +...+.++.+|..|.|+.|++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l--~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL--ETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc--ccccccccchheeeecccCcc
Confidence 776666655555666666667777766666665555555556666666666666533 223344456666666666666
Q ss_pred cccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccc
Q 045487 451 SGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDG 530 (729)
Q Consensus 451 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 530 (729)
+...+..+.++++|+.|++..|++.-.-...|..+++|+.|.+..|.+...++ ..|..+.++++++++.|++..
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D------G~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD------GAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC------cceeeecccceeecccchhhh
Confidence 65555555556666666666666643333455666666666666666665543 445556666666666665543
Q ss_pred cCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhcc
Q 045487 531 VLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFC 610 (729)
Q Consensus 531 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 610 (729)
.-. .++-++++|+.|++|+|.+...-++.++.+++|++|+|++|+++...+..|.
T Consensus 284 vn~-------------------------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 284 VNE-------------------------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred hhc-------------------------ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 333 3344555666666666666555555555566666666666666655555555
Q ss_pred CCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCC---hhhhccCCCCEEeCCCCcCcccCCccCcCCCCC
Q 045487 611 HFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIP---STFWNLEDILSFDFSSNSLNGSLPLEIGNLKAV 687 (729)
Q Consensus 611 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 687 (729)
.+..|++|+|++|++......+|..+++|++|||++|.+...+. ..|..+++|+.|++.+|++....-++|..++.|
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 56666666666666665555556666666666666666554432 345556666666666666654444556666666
Q ss_pred CEEeCCCCccccccccccccCCCCCeeecc
Q 045487 688 VNIDLSWNRLSGNIPSTIVGLKNLQRLSLK 717 (729)
Q Consensus 688 ~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~ 717 (729)
|+|||.+|.|...-|++|..+ .|++|.+.
T Consensus 419 E~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ceecCCCCcceeecccccccc-hhhhhhhc
Confidence 666666666665556666665 55555543
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-36 Score=311.80 Aligned_cols=507 Identities=26% Similarity=0.301 Sum_probs=317.9
Q ss_pred eeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeec
Q 045487 125 LRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYN 204 (729)
Q Consensus 125 L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 204 (729)
+|++.+.++ .+|..+-.-..++.|+++.|.+. ..|-++....-+|+.|++++|
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l--------------------------~~pl~~~~~~v~L~~l~lsnn 55 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLL--------------------------SRPLEFVEKRVKLKSLDLSNN 55 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccc--------------------------cCchHHhhheeeeEEeecccc
Confidence 445555555 55555544444555555555433 223333333467999999999
Q ss_pred CCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccCh
Q 045487 205 QFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPA 284 (729)
Q Consensus 205 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 284 (729)
++. ..|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|..|... ..|..+..+++|+.|+++.|.+. .+|.
T Consensus 56 ~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl 131 (1081)
T KOG0618|consen 56 QIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL 131 (1081)
T ss_pred ccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch
Confidence 887 88999999999999999999887 66788899999999999988876 78899999999999999999998 8998
Q ss_pred hhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCC
Q 045487 285 SIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNST 364 (729)
Q Consensus 285 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~ 364 (729)
.+..+.. ++.+..++|.....++.. .++.+++..|.+.+.++..+..++. .+++.+|.+. . -.+..++
T Consensus 132 ~i~~lt~-~~~~~~s~N~~~~~lg~~------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~ 199 (1081)
T KOG0618|consen 132 VIEVLTA-EEELAASNNEKIQRLGQT------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLA 199 (1081)
T ss_pred hHHhhhH-HHHHhhhcchhhhhhccc------cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhcc
Confidence 8888887 888888888322222221 1566666666666665555555554 5677776664 1 1344555
Q ss_pred CCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEE
Q 045487 365 KLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLN 444 (729)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 444 (729)
+|+.+....|.+... ...-++|+.|+.++|.+....+. .. ..+|++++
T Consensus 200 ~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~--------------------------p~nl~~~d 247 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PV--------------------------PLNLQYLD 247 (1081)
T ss_pred chhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cc--------------------------cccceeee
Confidence 666665555544311 11224455555555555432221 11 33444445
Q ss_pred CCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEcc
Q 045487 445 LGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLS 524 (729)
Q Consensus 445 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 524 (729)
++.+++.. +|.++..+.+|+.++..+|.++ ..|..+....+|+.+.+..|++... +......++|+.|++.
T Consensus 248 is~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-------p~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 248 ISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-------PPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-------CCcccccceeeeeeeh
Confidence 54444442 2344445555555555555542 3344444445555555555544433 1222334455555555
Q ss_pred CCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCccccc
Q 045487 525 ENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGP 604 (729)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 604 (729)
.|.+....+..+.....++..+..+.+.+.......=...+.|+.|.+.+|.++......+.++++|+.|+|++|++...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 55443222111111111244444444433321111123455678888888888876666777788888888888888744
Q ss_pred CChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcc-cCCccCcC
Q 045487 605 IPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNG-SLPLEIGN 683 (729)
Q Consensus 605 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~ 683 (729)
....+.+++.|++|++|+|+++ .+|.++.++..|++|...+|.+.. .| .+..++.|+.+|+|.|+++. .+|....
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p- 474 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALP- 474 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCC-
Confidence 4445677888888888888888 777888888888888888888764 45 77788888888888888764 3444433
Q ss_pred CCCCCEEeCCCCccccccccccccCCCCCeeeccCC
Q 045487 684 LKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHN 719 (729)
Q Consensus 684 l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n 719 (729)
.++|++||+++|.-....-..|..+.++..+++.-|
T Consensus 475 ~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 378888888888865555566666677776666655
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=4.8e-34 Score=298.07 Aligned_cols=475 Identities=27% Similarity=0.303 Sum_probs=345.1
Q ss_pred CCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhh
Q 045487 184 SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELG 263 (729)
Q Consensus 184 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 263 (729)
.||..++.. ..++.|++..|-+-...-+.+.+.-+|+.|++++|+++ ..|..+..+.+|+.|+++.|-+. ..|...+
T Consensus 12 ~ip~~i~~~-~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~ 88 (1081)
T KOG0618|consen 12 LIPEQILNN-EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCS 88 (1081)
T ss_pred ccchhhccH-HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhh
Confidence 455555544 55888888888665333344555666888899888877 66777888888888888888776 5667788
Q ss_pred CCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCC
Q 045487 264 NLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLS 343 (729)
Q Consensus 264 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 343 (729)
++.+|+++.|.+|.+. ..|.++..+.. |+.|+++.|.+. .+|. .+..+..++
T Consensus 89 ~~~~l~~lnL~~n~l~-~lP~~~~~lkn-l~~LdlS~N~f~-~~Pl-------------------------~i~~lt~~~ 140 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQ-SLPASISELKN-LQYLDLSFNHFG-PIPL-------------------------VIEVLTAEE 140 (1081)
T ss_pred hhhcchhheeccchhh-cCchhHHhhhc-ccccccchhccC-CCch-------------------------hHHhhhHHH
Confidence 8888888888888777 77877777666 677777766665 4443 333344444
Q ss_pred EEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCcc
Q 045487 344 TVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNT 423 (729)
Q Consensus 344 ~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 423 (729)
.+..++|..... ++... ++.+++..+.+.+.++..+..+.. .+++++|.+.. ..+..+++|+.+....|+
T Consensus 141 ~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ 210 (1081)
T KOG0618|consen 141 ELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQ 210 (1081)
T ss_pred HHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcc
Confidence 455555511111 11111 556666666666666655555554 57777776651 235566777777777776
Q ss_pred CcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcc
Q 045487 424 FSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTS 503 (729)
Q Consensus 424 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 503 (729)
+.... ..-++++.|+.+.|.++... ......+|+.++++.|.+++. |+|+..+.+|+.+...+|.++..
T Consensus 211 ls~l~------~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~l-- 279 (1081)
T KOG0618|consen 211 LSELE------ISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVAL-- 279 (1081)
T ss_pred cceEE------ecCcchheeeeccCcceeec--cccccccceeeecchhhhhcc-hHHHHhcccceEecccchhHHhh--
Confidence 64211 11567888888888887332 233457899999999999865 59999999999999999999664
Q ss_pred hhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCC-ccEEEccCCcccccCC
Q 045487 504 ELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLIN-LTTLGLGDNNLSGSLP 582 (729)
Q Consensus 504 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~ 582 (729)
+......++|+.+.+..|++.. +|....... +++.|++..|++....+..+..... +..|..+.+++.....
T Consensus 280 -----p~ri~~~~~L~~l~~~~nel~y-ip~~le~~~-sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 280 -----PLRISRITSLVSLSAAYNELEY-IPPFLEGLK-SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred -----HHHHhhhhhHHHHHhhhhhhhh-CCCcccccc-eeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 4555667889999999998763 444444344 8999999999876543334444444 7778888888763322
Q ss_pred ccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCC
Q 045487 583 MTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLED 662 (729)
Q Consensus 583 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 662 (729)
..=...+.|+.|++.+|.+++.....+.++.+|+.|++++|++.......+.++..|++|++++|+++. +|.++..+..
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~ 431 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGR 431 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhh
Confidence 222346789999999999999888889999999999999999995555678999999999999999985 7899999999
Q ss_pred CCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCc
Q 045487 663 ILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNK 720 (729)
Q Consensus 663 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~ 720 (729)
|++|....|++. ..| .+..+++|+.+|+|.|+++...-.....-+.|++||++||.
T Consensus 432 L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999999998 788 88999999999999999986543322233899999999996
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=8.5e-32 Score=268.73 Aligned_cols=363 Identities=26% Similarity=0.414 Sum_probs=262.7
Q ss_pred CcEEEccccccC-CCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcc
Q 045487 318 LKGLYMSYNQFK-GPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGID 396 (729)
Q Consensus 318 L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 396 (729)
.+-+++++|.++ +..|.....++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence 566677777776 356667777788888888887776 67888888888888888888876 445567778888888888
Q ss_pred ccccee-eCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcce
Q 045487 397 QSNLVG-FVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFS 475 (729)
Q Consensus 397 ~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 475 (729)
.|++.. -+|..+.++..|+.||+++|++. ..|..... -.++-+|++++|++..+....+.++..|-.|++++|++.
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~--AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY--AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhh--hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 887754 45677788888888899988887 44544333 677888899998888665566778888888999998887
Q ss_pred eccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCccc-ccCCcchhcCccccceEecccCccc
Q 045487 476 GLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLD-GVLPSSIGNHSVSVEEIYMYKCNIH 554 (729)
Q Consensus 476 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~ 554 (729)
. .|....++..|+.|++++|.+... ....+..+++|+.|.+++.+-+ ..+|.++.... +|..++++.|++.
T Consensus 164 ~-LPPQ~RRL~~LqtL~Ls~NPL~hf------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~-NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 164 M-LPPQIRRLSMLQTLKLSNNPLNHF------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH-NLRDVDLSENNLP 235 (1255)
T ss_pred h-cCHHHHHHhhhhhhhcCCChhhHH------HHhcCccchhhhhhhcccccchhhcCCCchhhhh-hhhhccccccCCC
Confidence 4 455688888899999988877654 2245566778888888877432 34555555544 6677777766654
Q ss_pred ccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCcccc-ccChhh
Q 045487 555 GRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSG-SIPSCL 633 (729)
Q Consensus 555 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l 633 (729)
.+|..+-.+++|+.|+||+|+++ ......+...+|++|++|.|+++ .+|+.++.+++|+.|++.+|+++- -+|..+
T Consensus 236 -~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 46666667777777777777776 33334455667777777777777 667777777777777777777652 366777
Q ss_pred cCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccc
Q 045487 634 GDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 634 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~ 698 (729)
+.+..|+.+..++|.+. ..|+++..|..|+.|.|++|++. .+|+++.-++.|+.||+..|.-.
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 77777777777776664 56777777777777777777776 67777777777777777777655
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.5e-31 Score=265.40 Aligned_cols=338 Identities=25% Similarity=0.401 Sum_probs=166.3
Q ss_pred cEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCC-CcCcccccCCCCCCEEEc
Q 045487 73 RVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQ-GEIPEELGNLAELEVLVL 151 (729)
Q Consensus 73 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~l 151 (729)
+++.|.+...++. .+|+.++.+.+|++|.+++|++. .+...++.++.||.++++.|.+. ..+|..+-++..|.+|||
T Consensus 33 ~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred heeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 3444444444443 44555555555555555555543 33344455555555555555442 234555555555555555
Q ss_pred cCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccC
Q 045487 152 NNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFT 231 (729)
Q Consensus 152 ~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 231 (729)
|+|++. .+|..+.+..++ -.|+||+|++. +||..++.++..|-.|||++|++. .+|+.+..+.+|+.|.+++|.+.
T Consensus 111 ShNqL~-EvP~~LE~AKn~-iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 111 SHNQLR-EVPTNLEYAKNS-IVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred chhhhh-hcchhhhhhcCc-EEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence 555555 555555544444 45555555555 555555555555555555555554 44555555555555555555443
Q ss_pred CCCCccccCCCCCCEEEcccCcCc-ccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCch
Q 045487 232 GRLPRDLGNLTRLKSLYLGFNNLI-GEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDD 310 (729)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 310 (729)
..--.-+..+++|+.|.+++..-+ ..+|..+..+.+|+.++++.|.+. .+|+.+..+.+ |+.|++++|+++ .+...
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~-LrrLNLS~N~it-eL~~~ 263 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRN-LRRLNLSGNKIT-ELNMT 263 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhh-hheeccCcCcee-eeecc
Confidence 222222334455555555544322 234455555555555555555554 55555555555 555555555544 22211
Q ss_pred hhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEcccccccc-ccCcCccCCCCCcEEEeeCccccccccccccCCCC
Q 045487 311 TCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTG-RIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRN 389 (729)
Q Consensus 311 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 389 (729)
.. ...+|+.|+++.|+++ ..|..++.++.|+.|.+.+|+++- -+|..++.+.+|+.+..++|.+. ..|+.++.|..
T Consensus 264 ~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 264 EG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred HH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH
Confidence 11 1223555555555554 444455555555555555554431 23444455555555544444433 44555555555
Q ss_pred ccEEEcccccceeeCCccccCCCCCcEEECcCcc
Q 045487 390 LEILGIDQSNLVGFVPDTILNISTLKILSLFNNT 423 (729)
Q Consensus 390 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 423 (729)
|+.|.++.|++.. +|+++.-++.|+.||++.|+
T Consensus 341 L~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 341 LQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence 5555555544433 34444444555555555543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.7e-22 Score=236.13 Aligned_cols=346 Identities=22% Similarity=0.259 Sum_probs=178.1
Q ss_pred hhhhCCCCCcEEEeecCc------CccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCC
Q 045487 260 EELGNLAELEMLVLTSNL------LTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIP 333 (729)
Q Consensus 260 ~~l~~l~~L~~L~l~~~~------~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 333 (729)
..|.++++|+.|.+..+. ....+|..+..++..|+.|.+.++.+. .+|..+ .+.+|+.|++.++.+. .++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccc
Confidence 456777788877776543 222455555555555777777766665 555544 2455666666666655 344
Q ss_pred CCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCC
Q 045487 334 NNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNIST 413 (729)
Q Consensus 334 ~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 413 (729)
..+..+++|+.++++++...+.+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 4555666666666666543334442 5556666666666665555566666666666666666655545455433 4566
Q ss_pred CcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEec
Q 045487 414 LKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGL 493 (729)
Q Consensus 414 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 493 (729)
|+.|++++|.....+|.. .++|+.|+++++.+. .+|..+ .+++|..|.+.++..
T Consensus 706 L~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~------------------- 759 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKS------------------- 759 (1153)
T ss_pred CCEEeCCCCCCccccccc-----cCCcCeeecCCCccc-cccccc-cccccccccccccch-------------------
Confidence 666666666443333321 345555555555543 223222 234444444443221
Q ss_pred cCCcccCCcchhhhh-hhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEc
Q 045487 494 RRNYLTSSTSELMSF-FSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGL 572 (729)
Q Consensus 494 ~~~~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 572 (729)
.......... ......+++|+.|++++|.....+|.++..+. +|+.|++++|...+.+|... .+++|+.|++
T Consensus 760 -----~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 760 -----EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred -----hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 1100000000 00111234555555555554445555544444 55555555555444444433 4555555555
Q ss_pred cCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCc
Q 045487 573 GDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNE 648 (729)
Q Consensus 573 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 648 (729)
++|.....+|.. .++|+.|++++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 833 SGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 555443333322 234555555555554 345555555555555555544333444444555555555555553
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=5.2e-22 Score=233.74 Aligned_cols=340 Identities=18% Similarity=0.231 Sum_probs=189.1
Q ss_pred hhhccCCCCcEEEcccccc------CCCCCCCCCCC-CCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccc
Q 045487 310 DTCHGLPRLKGLYMSYNQF------KGPIPNNLWHC-KDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQ 382 (729)
Q Consensus 310 ~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~-~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 382 (729)
..|..+++|+.|.+..+.. ...+|..+..+ .+|+.|++.++.+. .+|..+ ...+|++|++.++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 3444555566665544321 11233333333 34666666665554 344444 3456666666665544 3445
Q ss_pred cccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCC
Q 045487 383 EIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNAS 462 (729)
Q Consensus 383 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 462 (729)
.+..+++|+.++++++.....+| .+..+++|+.|++++|.....+|..+. .+++|+.|++++|...+.+|..+ +++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQ--YLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhh--ccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 55556666666666554444444 245556666666666554444444322 25566666666655444444433 456
Q ss_pred CCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCccccc------CCcch
Q 045487 463 KLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGV------LPSSI 536 (729)
Q Consensus 463 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~~ 536 (729)
+|+.|++++|......|. ..++|+.|+++++.+...+. ...+++|++|++.++..... .+...
T Consensus 705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~--------~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPS--------NLRLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccc--------cccccccccccccccchhhccccccccchhh
Confidence 666666666654333332 23456666666666554321 11345666666655432110 11111
Q ss_pred hcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCC
Q 045487 537 GNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLY 616 (729)
Q Consensus 537 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 616 (729)
...+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|... ++++|+.|++++|.....+|.. .++|+
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~ 849 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNIS 849 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccC
Confidence 2223467777777777666677777777777777777776544555544 5677777777776544344332 24677
Q ss_pred EEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCc
Q 045487 617 EVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNS 672 (729)
Q Consensus 617 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 672 (729)
.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 7777777776 566667777777777777655444466666667777777777775
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=5.4e-24 Score=202.41 Aligned_cols=203 Identities=22% Similarity=0.270 Sum_probs=129.5
Q ss_pred hhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccc
Q 045487 510 SALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLK 589 (729)
Q Consensus 510 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 589 (729)
..+..+++|+.+++++|++++.-+.++.... .+++|++.+|++...-...|..+..|+.|+|.+|+++...|..|..+.
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAA-ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchh-hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 3466677777777777777766555555555 777777777766554445567777778888888887766777777777
Q ss_pred cCceEecCCCcccccC-Chhc---------------cCCCCCCEEECcCCccccc---cCh---------hhcCCCCCCE
Q 045487 590 KLQGLYLQNNKFEGPI-PQEF---------------CHFSRLYEVDMNGNKLSGS---IPS---------CLGDLNSLRI 641 (729)
Q Consensus 590 ~L~~L~l~~n~l~~~~-~~~~---------------~~l~~L~~L~l~~n~~~~~---~~~---------~l~~l~~L~~ 641 (729)
+|..|++-.|.+.... .+++ +.-..++.+.+++..+... .|+ +-..++-+.+
T Consensus 347 ~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~t 426 (498)
T KOG4237|consen 347 SLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDT 426 (498)
T ss_pred eeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhh
Confidence 7777777666543210 0010 1122455566655543311 121 1122333333
Q ss_pred EECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCC
Q 045487 642 LSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHN 719 (729)
Q Consensus 642 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n 719 (729)
..=-.|.....+|..+. ..-.++++.+|.++ .+|.. .+.+| .+|+++|+++...-..|.+++.|.+|.|+||
T Consensus 427 VvRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 427 VVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hHhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 32222333334444332 34678999999998 67766 56778 9999999999888889999999999999987
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=6.2e-23 Score=195.26 Aligned_cols=415 Identities=24% Similarity=0.247 Sum_probs=205.0
Q ss_pred CCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeec-CcCccccChhhhhhccccceEE
Q 045487 219 GLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTS-NLLTGAIPASIFNLSSMLTALD 297 (729)
Q Consensus 219 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~ 297 (729)
.-..++|..|+++...+.+|+.+++|+.|+|+.|.|+.+.|++|.++++|..|.+.+ |+++ .+|...+..-..++.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 344556666666655556666666666666666666666666666666665555554 4444 44443333222245555
Q ss_pred cccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCcccc
Q 045487 298 FTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLI 377 (729)
Q Consensus 298 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 377 (729)
+.-|.+. .++...+..++++..|.+.+|.+...--..+..+..++.+.+..|.+-. .++++.+.. ..
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~ 213 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DL 213 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HH
Confidence 5444444 4444444444444444444444443222234444444444444333110 011111100 00
Q ss_pred ccccccccCCCCccEEEcccccceeeCCccccCCCCCcEE--ECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCC
Q 045487 378 GEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKIL--SLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIP 455 (729)
Q Consensus 378 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L--~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 455 (729)
-..|..+++.....-..+.+.++....+..|.. +++.+ .+........+-....+..+++|+++++++|+++.+-+
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 011222233333332333333332222222211 11111 11111111122223335556777777777777776666
Q ss_pred cchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccC-Cc
Q 045487 456 SFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVL-PS 534 (729)
Q Consensus 456 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~ 534 (729)
.++.+...++.|.+..|++...-...|.++..|+.|++++|+++... +..|....+|..+.+-.|++...- ..
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~------~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA------PGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe------cccccccceeeeeehccCcccCccchH
Confidence 67777777777777777766555566677777777777777776652 355666667777777766654211 11
Q ss_pred chhcCccccceEecccCcccccCCccccCCCCccEEEccCCccccc---CCc---------cccccccCceEecCCCccc
Q 045487 535 SIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGS---LPM---------TLGRLKKLQGLYLQNNKFE 602 (729)
Q Consensus 535 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~---------~l~~l~~L~~L~l~~n~l~ 602 (729)
|+..+ +.+....+..| -+....++.+.+++..+... .|+ +-..++-+.+..=..|+..
T Consensus 366 wl~~W--------lr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l 435 (498)
T KOG4237|consen 366 WLGEW--------LRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL 435 (498)
T ss_pred HHHHH--------HhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch
Confidence 11110 11111111111 12223444555555443211 111 1122344443322222333
Q ss_pred ccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCC
Q 045487 603 GPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSN 671 (729)
Q Consensus 603 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 671 (729)
..+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|++....-..|.+++.|.+|-|++|
T Consensus 436 k~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 436 KLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 34555443 23467888888888 55554 45677 8888888888777778888888888888876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.2e-19 Score=193.36 Aligned_cols=266 Identities=27% Similarity=0.402 Sum_probs=188.4
Q ss_pred CCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEE
Q 045487 388 RNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYAL 467 (729)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 467 (729)
..-..|+++++.+. .+|..+. ++|+.|++.+|+++. +|.. +++|++|++++|+++. +|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l-----p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL-----PPELRTLEVSGNQLTS-LPVL---PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC-----CCCCcEEEecCCccCc-ccCc---cccccee
Confidence 34567899988887 4566554 479999999998873 4431 6889999999998884 3432 4688899
Q ss_pred EccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEe
Q 045487 468 ELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIY 547 (729)
Q Consensus 468 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 547 (729)
++++|.+... |. .+++|+.|++++|+++..+. ..++|+.|++++|.+.+ +|. .+.+|+.|+
T Consensus 268 ~Ls~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~LP~----------~p~~L~~LdLS~N~L~~-Lp~----lp~~L~~L~ 328 (788)
T PRK15387 268 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----------LPPGLQELSVSDNQLAS-LPA----LPSELCKLW 328 (788)
T ss_pred eccCCchhhh-hh---chhhcCEEECcCCccccccc----------cccccceeECCCCcccc-CCC----Ccccccccc
Confidence 9999988643 32 23678888999988876522 23678899999988775 332 233677888
Q ss_pred cccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCcccc
Q 045487 548 MYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSG 627 (729)
Q Consensus 548 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 627 (729)
+++|.+.. +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++
T Consensus 329 Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt- 395 (788)
T PRK15387 329 AYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT- 395 (788)
T ss_pred cccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-
Confidence 88887754 4531 2478888888888873 4432 3467778888888773 4543 246788888888887
Q ss_pred ccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccc
Q 045487 628 SIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIV 706 (729)
Q Consensus 628 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~ 706 (729)
.+|.. .++|+.|++++|.+++ +|..+ .+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..|..+.
T Consensus 396 ~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 396 SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 35433 2568888888888875 45432 45777888888887 6777788888888888888888877776653
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=6.3e-19 Score=191.96 Aligned_cols=266 Identities=25% Similarity=0.327 Sum_probs=201.1
Q ss_pred CCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEE
Q 045487 364 TKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELL 443 (729)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 443 (729)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. +++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l-----p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL-----PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc-----cccccee
Confidence 34567899999887 6777664 479999999998876 343 2578999999999887 34431 5789999
Q ss_pred ECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEc
Q 045487 444 NLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVL 523 (729)
Q Consensus 444 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 523 (729)
++.+|.+.. +|.. .+.|+.|++++|.++.. |. .+++|+.|++++|+++..+. ...+|+.|++
T Consensus 268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----------lp~~L~~L~L 329 (788)
T PRK15387 268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----------LPSELCKLWA 329 (788)
T ss_pred eccCCchhh-hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC----------Cccccccccc
Confidence 999998874 3332 35788899999988753 32 35789999999998887532 1245788889
Q ss_pred cCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccc
Q 045487 524 SENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEG 603 (729)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 603 (729)
++|.+.+ +|. .+.+|+.|++++|.+.. +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|+++.
T Consensus 330 s~N~L~~-LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 330 YNNQLTS-LPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS 396 (788)
T ss_pred ccCcccc-ccc----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC
Confidence 9998864 443 33489999999998874 5542 357888999999988 45643 3578999999999884
Q ss_pred cCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCc
Q 045487 604 PIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIG 682 (729)
Q Consensus 604 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 682 (729)
+|.. .++|+.|++++|+++ .+|..+ .+|+.|++++|.++ .+|..+..+++|+.|+|++|++++..+..+.
T Consensus 397 -LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 397 -LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred -CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 4543 367999999999988 466543 46888999999997 5788899999999999999999988776653
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1.3e-19 Score=186.06 Aligned_cols=240 Identities=23% Similarity=0.313 Sum_probs=157.5
Q ss_pred ccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCc--cccceEecccCcccc----
Q 045487 482 LGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHS--VSVEEIYMYKCNIHG---- 555 (729)
Q Consensus 482 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~---- 555 (729)
+...++++.++++++.+.........+...+..+++|+.+++++|.+.+..+..+.... +++++|++++|.+.+
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence 33444555555555544321222222334555566777777777666544443333322 137777777776652
Q ss_pred cCCccccCC-CCccEEEccCCccccc----CCccccccccCceEecCCCccccc----CChhccCCCCCCEEECcCCccc
Q 045487 556 RIPKEIGSL-INLTTLGLGDNNLSGS----LPMTLGRLKKLQGLYLQNNKFEGP----IPQEFCHFSRLYEVDMNGNKLS 626 (729)
Q Consensus 556 ~~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~ 626 (729)
.+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 222334555 7889999999988743 344566678899999999988743 2333455678999999999887
Q ss_pred cc----cChhhcCCCCCCEEECcCCcCccCCChhhhc-----cCCCCEEeCCCCcCc----ccCCccCcCCCCCCEEeCC
Q 045487 627 GS----IPSCLGDLNSLRILSLSSNELTSIIPSTFWN-----LEDILSFDFSSNSLN----GSLPLEIGNLKAVVNIDLS 693 (729)
Q Consensus 627 ~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~ls 693 (729)
+. +...+..+++|++|++++|.+++.....+.. .+.|+.|++++|.++ ..+...+..+++|++++++
T Consensus 207 ~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 207 DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 43 3345667888999999999988643333332 378999999999986 2344556677899999999
Q ss_pred CCccccc----cccccccC-CCCCeeeccCCcc
Q 045487 694 WNRLSGN----IPSTIVGL-KNLQRLSLKHNKL 721 (729)
Q Consensus 694 ~n~~~~~----~p~~l~~l-~~L~~l~l~~n~l 721 (729)
+|.++.. ....+... +.|+++++.+|++
T Consensus 287 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 287 GNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 9999865 34444445 6899999998874
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=2e-17 Score=181.77 Aligned_cols=335 Identities=23% Similarity=0.334 Sum_probs=150.2
Q ss_pred cCCHHHHHHHHHHHhhccCCCCCCc--ccCCCCCCCCCCccce----------------eEeeCCCCcEEEEEcCCCCCc
Q 045487 24 ANISRDQDALLSVKAHIINDNPRNI--LAQNWTSNTSVCSWMG----------------ITCDIYGNRVTSLTIPDLGLT 85 (729)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~w~~~~~~c~w~g----------------v~c~~~~~~v~~l~l~~~~~~ 85 (729)
.+...|-..+++..+.+ ..|... -...|...+++|.-.. |.|. ++.|+.+.+.+....
T Consensus 59 ~~~~~~~~~~~~~~~~l--~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~ 134 (754)
T PRK15370 59 TASPEEIKSKFECLRML--AFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQA 134 (754)
T ss_pred CCCHHHHHHHHHHHHHh--cCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCccccccccccccc
Confidence 44566777888888888 445321 1145999999997544 4443 667888877653322
Q ss_pred cccCCCCCCCCCC-CEEeCC----CccCcccCC---cc---c--cCCCCCceeeccCCcCCCcCcccccCCCCCCEEEcc
Q 045487 86 GTIPSYLGNLSSL-QTLVLS----HNWFSGTIP---RE---I--GNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLN 152 (729)
Q Consensus 86 ~~~~~~l~~l~~L-~~L~Ls----~~~~~~~~~---~~---l--~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 152 (729)
...... ..- .+-..- .....+..+ .. + +--.+...|++++++++ .+|..+. ++|+.|+++
T Consensus 135 ~~~~~~----~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 135 SSASGS----KDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILD 207 (754)
T ss_pred ccCCCC----CChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEec
Confidence 111000 000 000000 000000000 00 0 11134566777777766 5565553 467777777
Q ss_pred CCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCC
Q 045487 153 NNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTG 232 (729)
Q Consensus 153 ~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 232 (729)
+|.++ .+|..+.. ++ +.|++++|++. .+|..+. .+|+.|++++|.+. .+|..+.
T Consensus 208 ~N~Lt-sLP~~l~~--nL-~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~----------------- 261 (754)
T PRK15370 208 NNELK-SLPENLQG--NI-KTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP----------------- 261 (754)
T ss_pred CCCCC-cCChhhcc--CC-CEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh-----------------
Confidence 77666 45544321 11 33333333333 2222211 23444444444443 3333222
Q ss_pred CCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhh
Q 045487 233 RLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTC 312 (729)
Q Consensus 233 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 312 (729)
++|+.|++++|++. .+|..+. ++|+.|++++|+++ .+|..+. ..|+.|++++|.+. .+|...
T Consensus 262 ---------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt-~LP~~l- 323 (754)
T PRK15370 262 ---------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT-ALPETL- 323 (754)
T ss_pred ---------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc-cCCccc-
Confidence 23444444444433 2222221 23444444444443 2332221 12444555555444 233222
Q ss_pred ccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccE
Q 045487 313 HGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEI 392 (729)
Q Consensus 313 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 392 (729)
+++|+.|++++|.+++ +|..+ +++|+.|++++|.++ .+|..+ .++|+.|++++|.+. .+|..+. ..|+.
T Consensus 324 --~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~ 392 (754)
T PRK15370 324 --PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQI 392 (754)
T ss_pred --cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHH
Confidence 1335555555555443 23222 245555555555554 233322 245556666665555 3343332 24555
Q ss_pred EEcccccceeeCCcc----ccCCCCCcEEECcCccCc
Q 045487 393 LGIDQSNLVGFVPDT----ILNISTLKILSLFNNTFS 425 (729)
Q Consensus 393 L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~n~~~ 425 (729)
|++++|.+.. +|.. ...++.+..+++.+|++.
T Consensus 393 LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 393 MQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6666655542 2322 223455666666666654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=2.3e-17 Score=181.25 Aligned_cols=247 Identities=23% Similarity=0.343 Sum_probs=163.4
Q ss_pred CCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEE
Q 045487 412 STLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRL 491 (729)
Q Consensus 412 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 491 (729)
.+...|+++++.++ .+|... .++++.|++++|+++. +|..+. ++|+.|++++|.++. +|..+ ..+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I----p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI----PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc----ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhh--hccccEE
Confidence 35678888888776 455432 4678899999998874 444433 578888888888874 34333 2478888
Q ss_pred eccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEE
Q 045487 492 GLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLG 571 (729)
Q Consensus 492 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 571 (729)
++++|.+...+. .+ .++|+.|++++|++. .+|..+. .+|+.|++++|.+.. +|..+. ++|+.|+
T Consensus 247 ~Ls~N~L~~LP~-------~l--~s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~ 310 (754)
T PRK15370 247 ELSINRITELPE-------RL--PSALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLN 310 (754)
T ss_pred ECcCCccCcCCh-------hH--hCCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHH
Confidence 888888776532 22 146888888888776 3555443 377788888777663 444332 4677778
Q ss_pred ccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCcc
Q 045487 572 LGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTS 651 (729)
Q Consensus 572 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 651 (729)
+++|.++. +|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++.
T Consensus 311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 311 VQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN 381 (754)
T ss_pred hcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC
Confidence 88877773 44433 3577777888877774 454443 57778888888776 4565543 577788888887774
Q ss_pred CCChhhhccCCCCEEeCCCCcCcccCCccC----cCCCCCCEEeCCCCccc
Q 045487 652 IIPSTFWNLEDILSFDFSSNSLNGSLPLEI----GNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 652 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~ls~n~~~ 698 (729)
+|..+. .+|+.|++++|++. .+|..+ ...+.+..|++.+|+++
T Consensus 382 -LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 -LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 455443 35777778888776 445443 33466777778777776
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=3.8e-18 Score=175.22 Aligned_cols=254 Identities=23% Similarity=0.280 Sum_probs=183.1
Q ss_pred EEccCCcce-eccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccc------cCCcchhcC
Q 045487 467 LELGYNSFS-GLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDG------VLPSSIGNH 539 (729)
Q Consensus 467 L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~~~~ 539 (729)
|++..+.+. ......+..+..|+.++++++.++... ...+...+...+.++.++++++.+.+ .++..+...
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~--~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA--AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHH--HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 444444443 233455566677888888888776432 22345667788899999999987752 122344443
Q ss_pred ccccceEecccCcccccCCccccCCC---CccEEEccCCccccc----CCcccccc-ccCceEecCCCccccc----CCh
Q 045487 540 SVSVEEIYMYKCNIHGRIPKEIGSLI---NLTTLGLGDNNLSGS----LPMTLGRL-KKLQGLYLQNNKFEGP----IPQ 607 (729)
Q Consensus 540 ~~~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~n~l~~~----~~~ 607 (729)
. ++++|++++|.+.+..+..+..+. +|++|++++|++.+. +...+..+ ++|+.|++++|.+++. ++.
T Consensus 81 ~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 C-GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred C-ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 3 999999999998765555454444 499999999998732 23445666 8999999999998843 334
Q ss_pred hccCCCCCCEEECcCCccccc----cChhhcCCCCCCEEECcCCcCccCC----ChhhhccCCCCEEeCCCCcCcccCCc
Q 045487 608 EFCHFSRLYEVDMNGNKLSGS----IPSCLGDLNSLRILSLSSNELTSII----PSTFWNLEDILSFDFSSNSLNGSLPL 679 (729)
Q Consensus 608 ~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~ 679 (729)
.+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|++++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 566778999999999999843 3344566789999999999987553 34556778999999999998853332
Q ss_pred cCc-----CCCCCCEEeCCCCcccc----ccccccccCCCCCeeeccCCcccc
Q 045487 680 EIG-----NLKAVVNIDLSWNRLSG----NIPSTIVGLKNLQRLSLKHNKLQG 723 (729)
Q Consensus 680 ~l~-----~l~~L~~L~ls~n~~~~----~~p~~l~~l~~L~~l~l~~n~l~~ 723 (729)
.+. ..+.|++|++++|.+++ .+...+..+++|+++++++|++..
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 322 24799999999999973 234455667899999999999874
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-18 Score=146.42 Aligned_cols=160 Identities=28% Similarity=0.510 Sum_probs=122.9
Q ss_pred cCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCE
Q 045487 562 GSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRI 641 (729)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 641 (729)
-.+.+.+.|.++.|+++ .+|..+..+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++. ..|..|++++-|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34566777778888877 56667777788888888888877 56777778888888888888877 77777888888888
Q ss_pred EECcCCcCcc-CCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCc
Q 045487 642 LSLSSNELTS-IIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNK 720 (729)
Q Consensus 642 L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~ 720 (729)
||+.+|++.. ..|+.|-.++.|+.|++++|.+. .+|...+++++|+.|.+..|.+. ..|..++.+..|+.|.++||+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 8888777753 46777777888888888888886 77777888888888888888877 677778888888888888888
Q ss_pred cccCCCC
Q 045487 721 LQGPIPE 727 (729)
Q Consensus 721 l~~~~p~ 727 (729)
++- +|+
T Consensus 185 l~v-lpp 190 (264)
T KOG0617|consen 185 LTV-LPP 190 (264)
T ss_pred eee-cCh
Confidence 754 443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=7e-18 Score=142.20 Aligned_cols=157 Identities=31% Similarity=0.524 Sum_probs=74.2
Q ss_pred CCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCcccccccccc
Q 045487 92 LGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSIS 171 (729)
Q Consensus 92 l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll 171 (729)
+.++.+++.|.||+|+++ .+|..++.+.+|++|++.+|+++ .+|.+++.+++|++|+++-|++. .+|..++.++.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l- 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL- 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh-
Confidence 344455555666666655 44445566666666666666665 55666666666666666655555 555555555222
Q ss_pred cccccccccccc-CCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcc
Q 045487 172 TGLDFSNNSLTG-SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLG 250 (729)
Q Consensus 172 ~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 250 (729)
+.||++.|++.. .+|..+|.. +.|+.|+++.|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.
T Consensus 105 evldltynnl~e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 222222222211 122222221 44444444444443 44444444444444444444433 334444444444444444
Q ss_pred cCcCc
Q 045487 251 FNNLI 255 (729)
Q Consensus 251 ~~~~~ 255 (729)
+|+++
T Consensus 182 gnrl~ 186 (264)
T KOG0617|consen 182 GNRLT 186 (264)
T ss_pred cceee
Confidence 44443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=5.6e-14 Score=154.47 Aligned_cols=139 Identities=34% Similarity=0.626 Sum_probs=119.0
Q ss_pred hccCCHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCC-----ccceeEeeCC--C--CcEEEEEcCCCCCccccCCCC
Q 045487 22 AAANISRDQDALLSVKAHIINDNPRNILAQNWTSNTSVC-----SWMGITCDIY--G--NRVTSLTIPDLGLTGTIPSYL 92 (729)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~--~--~~v~~l~l~~~~~~~~~~~~l 92 (729)
...+..+|.+||.++|+++ .+|.. .+|.. +.| .|.|+.|... . .+|+.|+|+++.+.|.+|+.+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~--~~~~~---~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i 438 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSL--GLPLR---FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDI 438 (623)
T ss_pred ccccCchHHHHHHHHHHhc--CCccc---CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHH
Confidence 3445667899999999998 34321 47964 344 7999999532 1 259999999999999999999
Q ss_pred CCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCcccccc
Q 045487 93 GNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNL 167 (729)
Q Consensus 93 ~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 167 (729)
.++++|+.|+|++|.+.+.+|..++.+++|++|+|++|.+++.+|..++++++|++|++++|.+++.+|..+...
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887653
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=2.1e-13 Score=137.01 Aligned_cols=195 Identities=31% Similarity=0.456 Sum_probs=124.3
Q ss_pred CCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceE
Q 045487 515 CKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGL 594 (729)
Q Consensus 515 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 594 (729)
+..-...|++.|++. ++|..++.+- .|+.+.+..|.+- .+|..+..+..|+.++|+.|+++ ..|..+..|+ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~-~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFV-SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHH-HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 344456677777765 4565555544 5666666655543 45666667777777777777776 4555555554 6777
Q ss_pred ecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCc
Q 045487 595 YLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 595 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 674 (729)
.+++|+++ .+|..++..++|..||.+.|.+. .+|..+.++.+|+.|.++.|++.. .|..+.. -.|..||+|+|+++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee
Confidence 77777776 56666666677777777777766 666666777777777777777664 4555553 33667777777776
Q ss_pred ccCCccCcCCCCCCEEeCCCCcccccccccc---ccCCCCCeeeccCCc
Q 045487 675 GSLPLEIGNLKAVVNIDLSWNRLSGNIPSTI---VGLKNLQRLSLKHNK 720 (729)
Q Consensus 675 ~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l---~~l~~L~~l~l~~n~ 720 (729)
.+|.+|.+++.|++|-|.+|.+. +-|..+ +..+=.|+|+.+-|+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 67777777777777777777775 223222 233556666666663
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=3.4e-12 Score=121.12 Aligned_cols=190 Identities=20% Similarity=0.299 Sum_probs=103.7
Q ss_pred hhhhhccCCCCcEEEccCCcccccCCcchhc---CccccceEecccCcccccC-------------CccccCCCCccEEE
Q 045487 508 FFSALVNCKSLKVIVLSENPLDGVLPSSIGN---HSVSVEEIYMYKCNIHGRI-------------PKEIGSLINLTTLG 571 (729)
Q Consensus 508 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~L~ 571 (729)
+..++..+++|+++++|+|-+....+..+.. ...+|++|++.+|.+...- ......-+.|+++.
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 4456677778888888888766544443321 1236666666666543211 11233455666776
Q ss_pred ccCCccccc----CCccccccccCceEecCCCccccc----CChhccCCCCCCEEECcCCccccc----cChhhcCCCCC
Q 045487 572 LGDNNLSGS----LPMTLGRLKKLQGLYLQNNKFEGP----IPQEFCHFSRLYEVDMNGNKLSGS----IPSCLGDLNSL 639 (729)
Q Consensus 572 l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L 639 (729)
..+|++... +...++..+.|+.+.+..|.+... ....+..+++|+.||+.+|.++.. +...++.+++|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 666666522 233455566666666666655422 223345566666666666666532 22345555666
Q ss_pred CEEECcCCcCccCCChhhh-----ccCCCCEEeCCCCcCcc----cCCccCcCCCCCCEEeCCCCcc
Q 045487 640 RILSLSSNELTSIIPSTFW-----NLEDILSFDFSSNSLNG----SLPLEIGNLKAVVNIDLSWNRL 697 (729)
Q Consensus 640 ~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~ls~n~~ 697 (729)
++|++++|.+.......|. ..++|++|.+.+|.++. .+..++...|.|+.|+|++|++
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6666666666555443332 23556666666666542 1222334455666666666665
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=8.7e-12 Score=118.41 Aligned_cols=237 Identities=17% Similarity=0.232 Sum_probs=163.9
Q ss_pred ccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCC---cccccCCcc-------hhcCccccceEecccC
Q 045487 482 LGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSEN---PLDGVLPSS-------IGNHSVSVEEIYMYKC 551 (729)
Q Consensus 482 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~---~~~~~~~~~-------~~~~~~~L~~L~l~~~ 551 (729)
.....+++.+++++|.+....... +...+...+.|+..++++- .....+|+. +..++ .|+.++++.|
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~--i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~-~L~~ldLSDN 102 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARA--IAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP-KLQKLDLSDN 102 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHH--HHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC-ceeEeecccc
Confidence 344566666666666655432222 3356666677777777654 222334433 33444 8999999999
Q ss_pred cccccCCc----cccCCCCccEEEccCCcccccCC-------------ccccccccCceEecCCCcccccC----Chhcc
Q 045487 552 NIHGRIPK----EIGSLINLTTLGLGDNNLSGSLP-------------MTLGRLKKLQGLYLQNNKFEGPI----PQEFC 610 (729)
Q Consensus 552 ~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~-------------~~l~~l~~L~~L~l~~n~l~~~~----~~~~~ 610 (729)
.+....+. .+.++..|++|.|.+|.+...-. .-.++-+.|+++....|++.... ...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 87654443 35678999999999998762211 12344578999999999886432 23456
Q ss_pred CCCCCCEEECcCCccccc----cChhhcCCCCCCEEECcCCcCccCC----ChhhhccCCCCEEeCCCCcCcccCCccC-
Q 045487 611 HFSRLYEVDMNGNKLSGS----IPSCLGDLNSLRILSLSSNELTSII----PSTFWNLEDILSFDFSSNSLNGSLPLEI- 681 (729)
Q Consensus 611 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l- 681 (729)
..+.|+.+.++.|.|... +...+..+++|+.||++.|.++... ...+...+.|++|++++|.+......++
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 678999999999987632 2346788999999999999987653 3455667889999999999875544443
Q ss_pred ----cCCCCCCEEeCCCCccccccc----cccccCCCCCeeeccCCcc
Q 045487 682 ----GNLKAVVNIDLSWNRLSGNIP----STIVGLKNLQRLSLKHNKL 721 (729)
Q Consensus 682 ----~~l~~L~~L~ls~n~~~~~~p----~~l~~l~~L~~l~l~~n~l 721 (729)
...|+|+.|.+.+|.|+...- ......+.|+.|+|++|++
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 236899999999999975432 2334568999999999998
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=1.3e-10 Score=128.01 Aligned_cols=110 Identities=28% Similarity=0.516 Sum_probs=82.2
Q ss_pred cCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCC
Q 045487 590 KLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFS 669 (729)
Q Consensus 590 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 669 (729)
.++.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 35667777777777777777777778888888887777777777777777888888777777777777777777777777
Q ss_pred CCcCcccCCccCcCC-CCCCEEeCCCCcccc
Q 045487 670 SNSLNGSLPLEIGNL-KAVVNIDLSWNRLSG 699 (729)
Q Consensus 670 ~n~l~~~~~~~l~~l-~~L~~L~ls~n~~~~ 699 (729)
+|++++.+|..+... .++..+++.+|....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 777777777776553 356677777776543
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=2.3e-11 Score=112.70 Aligned_cols=130 Identities=25% Similarity=0.308 Sum_probs=59.0
Q ss_pred cccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEe
Q 045487 588 LKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFD 667 (729)
Q Consensus 588 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 667 (729)
++.|+.+++++|.++ .+.+...-+|.++.|++++|++.... .++.+.+|+.||+++|.++. +.++=..+-+++.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 344455555555544 23333344455555555555554221 14444555555555554442 222333444455555
Q ss_pred CCCCcCcccCCccCcCCCCCCEEeCCCCcccccc-ccccccCCCCCeeeccCCcccc
Q 045487 668 FSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNI-PSTIVGLKNLQRLSLKHNKLQG 723 (729)
Q Consensus 668 L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~-p~~l~~l~~L~~l~l~~n~l~~ 723 (729)
|+.|.+. .-..++++=+|+.||+++|+|...- -.+++++|-|+.+.+.+|++.+
T Consensus 359 La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 5555442 1123444445555555555554211 1234455555555555555544
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=3.3e-11 Score=111.64 Aligned_cols=134 Identities=25% Similarity=0.379 Sum_probs=112.4
Q ss_pred ccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCC
Q 045487 561 IGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLR 640 (729)
Q Consensus 561 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 640 (729)
+..+..|+.+|+++|.++ .+.+...-.|.++.|++++|.+... +.++.+++|+.||+++|.++ .+..+-..+.+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 344567899999999998 5667777789999999999999843 34888999999999999998 5656666788999
Q ss_pred EEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccC-CccCcCCCCCCEEeCCCCccccc
Q 045487 641 ILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSL-PLEIGNLKAVVNIDLSWNRLSGN 700 (729)
Q Consensus 641 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ls~n~~~~~ 700 (729)
+|.++.|.+.+. ++++.+-+|..||+++|++...- -..++++|.||++.|.+|++.+.
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999998755 78899999999999999986321 24689999999999999999854
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.4e-10 Score=103.68 Aligned_cols=125 Identities=26% Similarity=0.367 Sum_probs=37.5
Q ss_pred cCCCCccEEEccCCcccccCCcccc-ccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhh-cCCCCC
Q 045487 562 GSLINLTTLGLGDNNLSGSLPMTLG-RLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCL-GDLNSL 639 (729)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L 639 (729)
.+...+++|+|++|.++. + +.++ .+.+|+.|++++|.++.. +++..++.|++|++++|+++. +.+.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 344456777777777662 2 2343 456677777777776643 355666677777777777763 33333 346667
Q ss_pred CEEECcCCcCccCC-ChhhhccCCCCEEeCCCCcCcccCC---ccCcCCCCCCEEe
Q 045487 640 RILSLSSNELTSII-PSTFWNLEDILSFDFSSNSLNGSLP---LEIGNLKAVVNID 691 (729)
Q Consensus 640 ~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~ 691 (729)
++|++++|++.... -..+..+++|+.|++.+|++....- ..+..+|+|+.||
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 77777777665431 2445556666666666666653211 1134456666665
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=2.1e-10 Score=121.14 Aligned_cols=152 Identities=36% Similarity=0.556 Sum_probs=70.0
Q ss_pred CccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECc
Q 045487 566 NLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLS 645 (729)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 645 (729)
+|+.|++++|.+. .+|..+..+++|+.|++++|+++ .++...+..+.|+.|++++|++. .+|........|++++++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 4555555555544 23233444555555555555554 22333224445555555555554 333332233335555555
Q ss_pred CCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccccC
Q 045487 646 SNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQGP 724 (729)
Q Consensus 646 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ 724 (729)
+|++. ..+..+..++.+..+.+.+|++. ..+..++.+++++.|++++|.++.. +. +..+.+++.+++++|.+...
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCcccccc
Confidence 55322 13344444455555555555544 2233444445555555555555522 22 44455555555555555443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.5e-10 Score=103.62 Aligned_cols=126 Identities=22% Similarity=0.280 Sum_probs=37.7
Q ss_pred cccccCceEecCCCcccccCChhcc-CCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhh-hccCCC
Q 045487 586 GRLKKLQGLYLQNNKFEGPIPQEFC-HFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTF-WNLEDI 663 (729)
Q Consensus 586 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L 663 (729)
.++.++++|+|.+|.++.. +.++ .+.+|+.|++++|+++. ++ .+..++.|++|++++|+++... +.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence 3444566666666666632 2343 35666667777776663 22 3556666667777776666532 233 346666
Q ss_pred CEEeCCCCcCcccCC-ccCcCCCCCCEEeCCCCcccccc---ccccccCCCCCeeec
Q 045487 664 LSFDFSSNSLNGSLP-LEIGNLKAVVNIDLSWNRLSGNI---PSTIVGLKNLQRLSL 716 (729)
Q Consensus 664 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~ls~n~~~~~~---p~~l~~l~~L~~l~l 716 (729)
++|++++|++...-. ..+..+++|+.|++.+|++...- ...+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 677777666653111 34455666666777766666331 122345666666653
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=1.6e-10 Score=129.81 Aligned_cols=83 Identities=24% Similarity=0.326 Sum_probs=55.4
Q ss_pred CCCCCEEeCCCcc--CcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccc
Q 045487 95 LSSLQTLVLSHNW--FSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSIST 172 (729)
Q Consensus 95 l~~L~~L~Ls~~~--~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~ 172 (729)
.+.|++|-+.++. +.......|..++.|++|||++|.--+.+|..|+.|.+||+|+++++.+. .+|..+.++..+ .
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L-~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL-I 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh-h
Confidence 3467777777664 44344445677788888888777665677888888888888888877777 777777777433 4
Q ss_pred ccccccc
Q 045487 173 GLDFSNN 179 (729)
Q Consensus 173 ~L~l~~~ 179 (729)
+|++..+
T Consensus 622 ~Lnl~~~ 628 (889)
T KOG4658|consen 622 YLNLEVT 628 (889)
T ss_pred eeccccc
Confidence 4444433
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.6e-11 Score=116.76 Aligned_cols=88 Identities=23% Similarity=0.246 Sum_probs=46.9
Q ss_pred CCCCcEEECCCCcCcccCC-cchhcCCCCcEEEccCCcceeccC--ccccccCCCcEEeccCCcccCCcchhhhhhhhhc
Q 045487 437 LPNLELLNLGLNNFSGSIP-SFCFNASKLYALELGYNSFSGLIP--EALGNLRNLKRLGLRRNYLTSSTSELMSFFSALV 513 (729)
Q Consensus 437 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~ 513 (729)
+..|+++.++++....... .....|++++.|+++.|-+....+ .....+++|+.|+++.|++....... ...
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-----~~~ 194 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-----TTL 194 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-----chh
Confidence 5667777777776543221 345566777777777766543222 33445666666666666555432211 111
Q ss_pred cCCCCcEEEccCCccc
Q 045487 514 NCKSLKVIVLSENPLD 529 (729)
Q Consensus 514 ~~~~L~~L~l~~~~~~ 529 (729)
.+++|+.|.+++|.++
T Consensus 195 ~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLS 210 (505)
T ss_pred hhhhhheEEeccCCCC
Confidence 3445555555555544
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.6e-11 Score=123.69 Aligned_cols=175 Identities=33% Similarity=0.477 Sum_probs=99.9
Q ss_pred CCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCcccccccccccc
Q 045487 94 NLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTG 173 (729)
Q Consensus 94 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~ 173 (729)
.+..-...||+.|++. .+|..++.+..|+.+.+..|.+. .+|..++++..|.+||++.|++. .+|..++.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l------ 143 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL------ 143 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC------
Confidence 3444556777777776 66777777777777788777777 77777888888888888888777 667666655
Q ss_pred ccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCc
Q 045487 174 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNN 253 (729)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 253 (729)
-|++|-+++|+++ .+|+.++...+|..|+.+.|.+. .+|.-++++.+|+.|.+..|+
T Consensus 144 ---------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 144 ---------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred ---------------------cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhh
Confidence 2444444444444 44444444444455555544444 334444444455555444444
Q ss_pred CcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCccc
Q 045487 254 LIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLT 304 (729)
Q Consensus 254 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 304 (729)
+. .+|..+..+ .|..||++.|++. .+|..+..+.. |++|.|.+|.+.
T Consensus 201 l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~-Lq~l~LenNPLq 247 (722)
T KOG0532|consen 201 LE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRH-LQVLQLENNPLQ 247 (722)
T ss_pred hh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhh-heeeeeccCCCC
Confidence 43 233333322 3444445544444 44444444444 555555554444
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=5.2e-10 Score=118.15 Aligned_cols=193 Identities=33% Similarity=0.486 Sum_probs=91.6
Q ss_pred EEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCC-CCCEEEccCCcCCCCCCccccccccccccccccc
Q 045487 100 TLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLA-ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSN 178 (729)
Q Consensus 100 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~-~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~ 178 (729)
.+++..+.+.. ....+..++.++.|++.++.++ .+|...+.+. +|++|++++|.+. .+|..+..++.+ +.|++++
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L-~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNL-KNLDLSF 172 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccc-cccccCC
Confidence 35555554421 1223344466666666666666 5555555553 6666666666665 554455555333 4444444
Q ss_pred cccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccC
Q 045487 179 NSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEI 258 (729)
Q Consensus 179 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 258 (729)
|++. .++.... ..+.|+.|++++|.+. .+|..+.....|+++.+++|... ..+..+.+++++..+.+..|++.. .
T Consensus 173 N~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 173 NDLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred chhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence 4443 2222111 1145555555555554 34443334444555555555322 233334455555555554444432 1
Q ss_pred ChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCccc
Q 045487 259 PEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLT 304 (729)
Q Consensus 259 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 304 (729)
+..++.++.++.|++++|.++ .++. +..... ++.|+++++.+.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~-l~~L~~s~n~~~ 290 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQIS-SISS-LGSLTN-LRELDLSGNSLS 290 (394)
T ss_pred cchhccccccceecccccccc-cccc-ccccCc-cCEEeccCcccc
Confidence 334445555555555555554 2222 333333 455555544444
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.1e-10 Score=114.20 Aligned_cols=211 Identities=22% Similarity=0.204 Sum_probs=131.0
Q ss_pred cCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcc--cCCcchhcCCCCcEEEccCCcceeccC-cccccc
Q 045487 409 LNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSG--SIPSFCFNASKLYALELGYNSFSGLIP-EALGNL 485 (729)
Q Consensus 409 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l 485 (729)
+++.+|+.+.+.++....... ......|++++.|+++.|-+.. .+-..+..+++|+.|+++.|.+..... ..-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 357889999999988753321 1334459999999999997764 223456688999999999998853332 222367
Q ss_pred CCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCccccc-CCccccCC
Q 045487 486 RNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGR-IPKEIGSL 564 (729)
Q Consensus 486 ~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l 564 (729)
+.|+.|.+++|.++-.+ +...+..+|+|+.|++++|.......... ..+..|++|++++|++... .-...+.+
T Consensus 197 ~~lK~L~l~~CGls~k~-----V~~~~~~fPsl~~L~L~~N~~~~~~~~~~-~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKD-----VQWILLTFPSLEVLYLEANEIILIKATST-KILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCCCCHHH-----HHHHHHhCCcHHHhhhhcccccceecchh-hhhhHHhhccccCCcccccccccccccc
Confidence 88999999999988331 23556678999999999985221111111 1222677777777765542 12335666
Q ss_pred CCccEEEccCCccccc-CCcc-----ccccccCceEecCCCccccc-CChhccCCCCCCEEECcCCccc
Q 045487 565 INLTTLGLGDNNLSGS-LPMT-----LGRLKKLQGLYLQNNKFEGP-IPQEFCHFSRLYEVDMNGNKLS 626 (729)
Q Consensus 565 ~~L~~L~l~~~~~~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~ 626 (729)
+.|+.|.++.|.+... .|++ ...+++|++|+++.|++.+- ....+..+++|+.|.+..|.++
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6777777777766532 2332 34456666666666665421 1122333455555555555554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=8.4e-10 Score=124.13 Aligned_cols=151 Identities=28% Similarity=0.262 Sum_probs=94.8
Q ss_pred CCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCc--CCCcCcccccCCCCCCEEEccCCcCCCCCCcccccccccc
Q 045487 94 NLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNK--LQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSIS 171 (729)
Q Consensus 94 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~--~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll 171 (729)
+....|...+-++.+. .++... .++.|++|-+..|. +....+..|..++.|++|||++|.--+.+|..|+++
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L---- 594 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL---- 594 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh----
Confidence 3356667766666554 222222 23468888777775 442334457778888888888877666788888777
Q ss_pred ccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEccc
Q 045487 172 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGF 251 (729)
Q Consensus 172 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 251 (729)
-+||.|+++++.+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+..
T Consensus 595 ----------------------i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 595 ----------------------VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ----------------------hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 66777777777766 7777777888888888777655444555556677788777765
Q ss_pred CcC--cccCChhhhCCCCCcEEEe
Q 045487 252 NNL--IGEIPEELGNLAELEMLVL 273 (729)
Q Consensus 252 ~~~--~~~~~~~l~~l~~L~~L~l 273 (729)
... ....-..+.++.+|+.+..
T Consensus 652 s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 652 SALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccccchhhHHhhhcccchhhhee
Confidence 431 1122223344444444444
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=3.9e-09 Score=77.39 Aligned_cols=58 Identities=40% Similarity=0.595 Sum_probs=25.4
Q ss_pred CCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCc
Q 045487 615 LYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNS 672 (729)
Q Consensus 615 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 672 (729)
|++|++++|+++...+..|..+++|++|++++|.++...+++|..+++|+.|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444444444443333344444444444444444444444444444444444444443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=7.1e-09 Score=76.02 Aligned_cols=59 Identities=34% Similarity=0.460 Sum_probs=31.7
Q ss_pred CCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCc
Q 045487 662 DILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNK 720 (729)
Q Consensus 662 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~ 720 (729)
+|++|++++|+++...+..|..+++|+.|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554444445555555555555555554445555555555555555554
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=3.4e-09 Score=111.88 Aligned_cols=245 Identities=27% Similarity=0.255 Sum_probs=149.1
Q ss_pred CCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCC
Q 045487 437 LPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCK 516 (729)
Q Consensus 437 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~ 516 (729)
+..++.+.+..|.+.. +-..+..+.+++.+++.+|.+.... ..+..+++|+++++++|.++.. .++..++
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--------~~l~~l~ 140 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--------EGLSTLT 140 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--------cchhhcc
Confidence 4455555555555442 1122344455555555555554221 1144455555555555555544 3334444
Q ss_pred CCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCC-ccccccccCceEe
Q 045487 517 SLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLP-MTLGRLKKLQGLY 595 (729)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ 595 (729)
.|+.|++++| .+... ..+..+++|+.+++++|++...-+ . ...+.+++.+.
T Consensus 141 ~L~~L~l~~N-------------------------~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~ 192 (414)
T KOG0531|consen 141 LLKELNLSGN-------------------------LISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELD 192 (414)
T ss_pred chhhheeccC-------------------------cchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHh
Confidence 4444444444 44321 224557889999999999884433 2 56788899999
Q ss_pred cCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCC--CCEEECcCCcCccCCChhhhccCCCCEEeCCCCcC
Q 045487 596 LQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNS--LRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSL 673 (729)
Q Consensus 596 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 673 (729)
+.+|.+... ..+..+..+..+++.+|.++..-+ +..+.. |+.+++++|++.. .+..+..+..+..+++..|++
T Consensus 193 l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 193 LGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccc
Confidence 999987743 334444555666888888874332 233333 8899999999875 335667778889999999988
Q ss_pred cccCCccCcCCCCCCEEeCCCCccccc---cccc-cccCCCCCeeeccCCccccCCC
Q 045487 674 NGSLPLEIGNLKAVVNIDLSWNRLSGN---IPST-IVGLKNLQRLSLKHNKLQGPIP 726 (729)
Q Consensus 674 ~~~~~~~l~~l~~L~~L~ls~n~~~~~---~p~~-l~~l~~L~~l~l~~n~l~~~~p 726 (729)
... ..+...+.+..+....+.+... .... ....+.+..+.+.+|+.....+
T Consensus 268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 632 3355567777788888887622 1221 3556888999999998877554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=4.6e-09 Score=110.89 Aligned_cols=170 Identities=28% Similarity=0.311 Sum_probs=110.3
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECc
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMN 621 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 621 (729)
+|+.|++++|.+....+ +..++.|+.|++++|.+... ..+..++.|+.+++++|.+...-+.....+.+++.+++.
T Consensus 119 ~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 119 NLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred cchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 44444444444433222 45556688888888888732 345557888888888888875433104667788888888
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCC--CCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccc
Q 045487 622 GNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLED--ILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 622 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
+|.+... ..+..+..+..+++..|.++.. ..+..+.. |+.+++++|++. ..+..+..++.++.|+++.|++..
T Consensus 195 ~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 195 GNSIREI--EGLDLLKKLVLLSLLDNKISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred CCchhcc--cchHHHHHHHHhhcccccceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence 8887732 2334445555667788877654 22333333 888999999987 343567778888999999888875
Q ss_pred ccccccccCCCCCeeeccCCccc
Q 045487 700 NIPSTIVGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 700 ~~p~~l~~l~~L~~l~l~~n~l~ 722 (729)
. ..+...+.+..+....|++.
T Consensus 270 ~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 270 L--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred c--ccccccchHHHhccCcchhc
Confidence 4 23445566777777777654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=2.1e-09 Score=111.68 Aligned_cols=126 Identities=25% Similarity=0.275 Sum_probs=55.4
Q ss_pred CceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCC
Q 045487 591 LQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSS 670 (729)
Q Consensus 591 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 670 (729)
|.+.+.++|.++ .....+.-++.|+.|+|++|+++... .+..|+.|++|||+.|.+....--.-..+. |..|.|.+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 344444444444 22333444444555555555544222 344445555555555544432111111222 55555555
Q ss_pred CcCcccCCccCcCCCCCCEEeCCCCcccccc-ccccccCCCCCeeeccCCccc
Q 045487 671 NSLNGSLPLEIGNLKAVVNIDLSWNRLSGNI-PSTIVGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 671 n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~-p~~l~~l~~L~~l~l~~n~l~ 722 (729)
|.++. -..+.++.+|+.||+++|-+.+-- -.-+..+.+|+.|+|.||++-
T Consensus 242 N~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 55431 123444555555555555554321 111234455666666666553
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.3e-09 Score=98.63 Aligned_cols=180 Identities=19% Similarity=0.152 Sum_probs=106.7
Q ss_pred CCcEEECCCCcCcc-cCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCC
Q 045487 439 NLELLNLGLNNFSG-SIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKS 517 (729)
Q Consensus 439 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~ 517 (729)
.|+++|++...++. .....+..|.+|+.+.+.++++.+.+...+..-.+|+.++++.|.-..... ....+.+|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~----~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA----LQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH----HHHHHHhhhh
Confidence 46666666665543 233455667777888888887777777777777888888888765322211 2245677888
Q ss_pred CcEEEccCCccccc-CCcchhcCccccceEecccCccc--c-cCCccccCCCCccEEEccCCcccc-cCCccccccccCc
Q 045487 518 LKVIVLSENPLDGV-LPSSIGNHSVSVEEIYMYKCNIH--G-RIPKEIGSLINLTTLGLGDNNLSG-SLPMTLGRLKKLQ 592 (729)
Q Consensus 518 L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~--~-~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~ 592 (729)
|.+|+++.|..... +...+.....++..|++++|.-. . .+.-....+++|..||+++|.... .....+-.++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 88888888865433 22333444457777777776421 1 111123566777777777776432 1223344566777
Q ss_pred eEecCCCcccccCChh---ccCCCCCCEEECcCCc
Q 045487 593 GLYLQNNKFEGPIPQE---FCHFSRLYEVDMNGNK 624 (729)
Q Consensus 593 ~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~ 624 (729)
+|.++.|.. .+|.. +...|+|.+|++.+|-
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 777776652 33333 2445666666666554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=1.3e-09 Score=113.21 Aligned_cols=127 Identities=25% Similarity=0.306 Sum_probs=75.8
Q ss_pred CccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECc
Q 045487 566 NLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLS 645 (729)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 645 (729)
.|.+.+.+.|.++ .....+.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+....-....+|. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4556666666666 4445566666677777777776643 3555666777777777766632222233334 6777777
Q ss_pred CCcCccCCChhhhccCCCCEEeCCCCcCcccCC-ccCcCCCCCCEEeCCCCccc
Q 045487 646 SNELTSIIPSTFWNLEDILSFDFSSNSLNGSLP-LEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 646 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~ls~n~~~ 698 (729)
+|-++.. .++.++.+|+.||+++|-+.+.-. .-+..+.+|..|.|.+|++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7766543 556666777777777776553211 22445566667777777664
No 46
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.48 E-value=1.8e-07 Score=62.37 Aligned_cols=40 Identities=38% Similarity=0.959 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCC--CCCCccceeEee
Q 045487 27 SRDQDALLSVKAHIINDNPRNILAQNWTSN--TSVCSWMGITCD 68 (729)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~ 68 (729)
.+|+++|++||+++. .+|.+.+ .+|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~-~~~~~~l-~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLN-NDPSGVL-SSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT--SC-CCC-TT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcc-cccCccc-ccCCCcCCCCCeeeccEEeC
Confidence 578999999999995 3565666 899986 799999999996
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.41 E-value=6e-09 Score=101.68 Aligned_cols=253 Identities=18% Similarity=0.094 Sum_probs=140.7
Q ss_pred cCCCCcEEEccCCc-ceeccCc-cccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCccc-ccCCcch
Q 045487 460 NASKLYALELGYNS-FSGLIPE-ALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLD-GVLPSSI 536 (729)
Q Consensus 460 ~~~~L~~L~l~~n~-~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~ 536 (729)
.|+.|+++++..|. ++...-+ .-..+++|++++++.|.-..... +-...+++..++.+...+|.-. ...-..+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g----v~~~~rG~~~l~~~~~kGC~e~~le~l~~~ 263 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG----VQALQRGCKELEKLSLKGCLELELEALLKA 263 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc----chHHhccchhhhhhhhcccccccHHHHHHH
Confidence 44555555555532 2221111 23356666666666654322211 1123344555666655555321 1111122
Q ss_pred hcCccccceEecccCcccccCCc--cccCCCCccEEEccCCcccccCC-ccc-cccccCceEecCCCc-ccccCChhc-c
Q 045487 537 GNHSVSVEEIYMYKCNIHGRIPK--EIGSLINLTTLGLGDNNLSGSLP-MTL-GRLKKLQGLYLQNNK-FEGPIPQEF-C 610 (729)
Q Consensus 537 ~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~l-~~l~~L~~L~l~~n~-l~~~~~~~~-~ 610 (729)
......+.++++..|........ .-..+..|+.|+.++|...+..+ ..+ .++.+|++|.+.+|+ +++.....+ .
T Consensus 264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 22222456666667754443321 12456788888888887643321 222 567889999998886 443333333 3
Q ss_pred CCCCCCEEECcCCcccc--ccChhhcCCCCCCEEECcCCcCcc-CCC----hhhhccCCCCEEeCCCCcCc-ccCCccCc
Q 045487 611 HFSRLYEVDMNGNKLSG--SIPSCLGDLNSLRILSLSSNELTS-IIP----STFWNLEDILSFDFSSNSLN-GSLPLEIG 682 (729)
Q Consensus 611 ~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~-~~~----~~~~~l~~L~~L~L~~n~l~-~~~~~~l~ 682 (729)
+++.|+.+++.++.... .+...-.+++.|+++.+++|.... ... ..-..+..|+.+.|++++.+ +..-+.+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 57889999998887541 122223567889999999886532 211 12234577889999999864 33334567
Q ss_pred CCCCCCEEeCCCCccccc--cccccccCCCCCeeec
Q 045487 683 NLKAVVNIDLSWNRLSGN--IPSTIVGLKNLQRLSL 716 (729)
Q Consensus 683 ~l~~L~~L~ls~n~~~~~--~p~~l~~l~~L~~l~l 716 (729)
.++.||++++-.|+--.. +-..-+.+|+++..-+
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 788999999888875322 1222345677665543
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.8e-08 Score=93.83 Aligned_cols=179 Identities=17% Similarity=0.131 Sum_probs=111.0
Q ss_pred CccccceEecccCccccc-CCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCc-ccccCC-hhccCCCCC
Q 045487 539 HSVSVEEIYMYKCNIHGR-IPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNK-FEGPIP-QEFCHFSRL 615 (729)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L 615 (729)
..+.++.++++...++.. +...+..|..|+.|.+.++++.+.+...+..-.+|+.|+++.|. ++.... --+.+++.|
T Consensus 183 frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 183 FRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 333577777776665442 22234566777777777777766665666666777777777664 332211 123566777
Q ss_pred CEEECcCCccccccChh-h-cCCCCCCEEECcCCcC--ccC-CChhhhccCCCCEEeCCCCc-CcccCCccCcCCCCCCE
Q 045487 616 YEVDMNGNKLSGSIPSC-L-GDLNSLRILSLSSNEL--TSI-IPSTFWNLEDILSFDFSSNS-LNGSLPLEIGNLKAVVN 689 (729)
Q Consensus 616 ~~L~l~~n~~~~~~~~~-l-~~l~~L~~L~l~~n~l--~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~ 689 (729)
.+|+++.|.+....... . .--+.|+.|++++++- ... +..-...++.|..||||+|. ++...-.++.+++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 77777777665332111 1 1125567777776641 111 11123467899999999987 44444456788899999
Q ss_pred EeCCCCccccccccc---cccCCCCCeeeccCC
Q 045487 690 IDLSWNRLSGNIPST---IVGLKNLQRLSLKHN 719 (729)
Q Consensus 690 L~ls~n~~~~~~p~~---l~~l~~L~~l~l~~n 719 (729)
|.++.|... +|+. +...|+|.+|++-|+
T Consensus 343 lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 999999864 5554 456689999998775
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=2.4e-07 Score=85.33 Aligned_cols=241 Identities=20% Similarity=0.249 Sum_probs=135.3
Q ss_pred cCCCCcEEEccCCcceeccCc----cccccCCCcEEeccCCcccCCcchh----hhhhhhhccCCCCcEEEccCCccccc
Q 045487 460 NASKLYALELGYNSFSGLIPE----ALGNLRNLKRLGLRRNYLTSSTSEL----MSFFSALVNCKSLKVIVLSENPLDGV 531 (729)
Q Consensus 460 ~~~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~ 531 (729)
.+..+..+++++|.+...... .+.+-.+|+..+++.-......+++ .-+...+-.|+.|+.+++|+|-|...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356677778888777544333 3344566777666654322222222 22344556677777777777766555
Q ss_pred CCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCccccc----CCcc---------ccccccCceEecCC
Q 045487 532 LPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGS----LPMT---------LGRLKKLQGLYLQN 598 (729)
Q Consensus 532 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~---------l~~l~~L~~L~l~~ 598 (729)
.|+.+. ..+++-+.|.+|.+++|.+... +..+ ..+-|.|++.....
T Consensus 108 ~~e~L~---------------------d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 108 FPEELG---------------------DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred cchHHH---------------------HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 444332 1245566788888888876521 1111 12346777777777
Q ss_pred CcccccCChh-----ccCCCCCCEEECcCCccccccC-----hhhcCCCCCCEEECcCCcCccCCChhhh----ccCCCC
Q 045487 599 NKFEGPIPQE-----FCHFSRLYEVDMNGNKLSGSIP-----SCLGDLNSLRILSLSSNELTSIIPSTFW----NLEDIL 664 (729)
Q Consensus 599 n~l~~~~~~~-----~~~l~~L~~L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~ 664 (729)
|++.. .+.. +..-..|+++.+..|.|.-... ..+..+.+|+.||+..|.++-.....++ .-+.|+
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 77653 2222 2222467777777777662211 1234567778888887777654333222 224577
Q ss_pred EEeCCCCcCcccCCccC------cCCCCCCEEeCCCCccccccccc-----c--ccCCCCCeeeccCCccc
Q 045487 665 SFDFSSNSLNGSLPLEI------GNLKAVVNIDLSWNRLSGNIPST-----I--VGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 665 ~L~L~~n~l~~~~~~~l------~~l~~L~~L~ls~n~~~~~~p~~-----l--~~l~~L~~l~l~~n~l~ 722 (729)
+|.+.+|-++.....++ ...|+|..|...+|-+.+.+-.. + .++|-|..|.+.||++.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 77777777664333222 12467777777777765433211 1 24566777777777664
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=2.2e-07 Score=85.56 Aligned_cols=249 Identities=17% Similarity=0.166 Sum_probs=136.9
Q ss_pred CCCCcEEECCCCcCcccCCcc----hhcCCCCcEEEccCCcce---ecc-------CccccccCCCcEEeccCCcccCCc
Q 045487 437 LPNLELLNLGLNNFSGSIPSF----CFNASKLYALELGYNSFS---GLI-------PEALGNLRNLKRLGLRRNYLTSST 502 (729)
Q Consensus 437 ~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~---~~~-------~~~~~~l~~L~~L~l~~~~l~~~~ 502 (729)
+..+..+++++|.+......+ +.+-.+|+..++++-... +.+ ...+..|+.|+.++++.|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 567777888888776543333 334456666666543211 111 123456778888888887766543
Q ss_pred chhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccC-
Q 045487 503 SELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSL- 581 (729)
Q Consensus 503 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~- 581 (729)
.+. +...+.+.+.|..|.+++|.+-...-..++. .|++| ..+ .....-|.|++.....|++..-.
T Consensus 109 ~e~--L~d~is~~t~l~HL~l~NnGlGp~aG~rigk---al~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 109 PEE--LGDLISSSTDLVHLKLNNNGLGPIAGGRIGK---ALFHL--AYN-------KKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred chH--HHHHHhcCCCceeEEeecCCCCccchhHHHH---HHHHH--HHH-------hhhccCCCceEEEeccchhccCcH
Confidence 322 2244566677777777777543221111111 11111 111 11234466777777777765211
Q ss_pred ---CccccccccCceEecCCCccccc-----CChhccCCCCCCEEECcCCccccc----cChhhcCCCCCCEEECcCCcC
Q 045487 582 ---PMTLGRLKKLQGLYLQNNKFEGP-----IPQEFCHFSRLYEVDMNGNKLSGS----IPSCLGDLNSLRILSLSSNEL 649 (729)
Q Consensus 582 ---~~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l 649 (729)
...+.+-..|+++.+..|.+.-. ...++..+++|+.||+.+|.++.. +..++...+.|+.|.+..|-+
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 11223335777777777766522 112234567788888888877632 223345556678888887777
Q ss_pred ccCCChhhh------ccCCCCEEeCCCCcCcccCCcc-------CcCCCCCCEEeCCCCcccc
Q 045487 650 TSIIPSTFW------NLEDILSFDFSSNSLNGSLPLE-------IGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 650 ~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~-------l~~l~~L~~L~ls~n~~~~ 699 (729)
+......+- ..++|..|-..+|...+.+-.. =.++|-|..|.+.+|++..
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 655444332 2366777777777654322222 1346667777777777763
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=1.9e-07 Score=76.81 Aligned_cols=117 Identities=19% Similarity=0.283 Sum_probs=62.1
Q ss_pred cCCCCccEEEccCCcccccCCccc-cccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCC
Q 045487 562 GSLINLTTLGLGDNNLSGSLPMTL-GRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLR 640 (729)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 640 (729)
.....|+..+|++|.+. .+|..| ..++.++.|++++|+++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++.
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 34445666666666665 444444 33456666666666666 44555666666666666666666 4444444466666
Q ss_pred EEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCc
Q 045487 641 ILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIG 682 (729)
Q Consensus 641 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 682 (729)
.|+..+|.+..+..+ +-.-+.....++.++++.+.-+..++
T Consensus 127 ~Lds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 127 MLDSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred HhcCCCCccccCcHH-HhccccHHHHHhcCCcccccCccccc
Confidence 666666655432222 22112222333444555544444433
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=1.1e-06 Score=82.10 Aligned_cols=187 Identities=20% Similarity=0.162 Sum_probs=83.0
Q ss_pred CCCCCCEEEcccCcCcc--cCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCC
Q 045487 240 NLTRLKSLYLGFNNLIG--EIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPR 317 (729)
Q Consensus 240 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 317 (729)
..+.++++||.+|.++. .+..-+.++++|++|+++.|++...+...-....+ |+.|.+.+..+.-.-.......+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n-l~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN-LRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc-eEEEEEcCCCCChhhhhhhhhcchh
Confidence 34555666666665542 22223455666666666666554222211112222 5555555554443333333334444
Q ss_pred CcEEEccccccCCC--CCCCC-CCCCCCCEEEcccccccc--ccCcCccCCCCCcEEEeeCcccccc-ccccccCCCCcc
Q 045487 318 LKGLYMSYNQFKGP--IPNNL-WHCKDLSTVSLSFNQFTG--RIPRDLGNSTKLKSLHLGLNNLIGE-IPQEIGNLRNLE 391 (729)
Q Consensus 318 L~~L~l~~~~~~~~--~~~~l-~~~~~L~~L~L~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~ 391 (729)
++.+.++.|.+... ..... ..-+.++++.+-.|...- ..-..-.-++++..+.+..|++... .......++.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 55555555532110 00000 011233333333332210 0000011245566666666655432 223344555566
Q ss_pred EEEcccccceee-CCccccCCCCCcEEECcCccCccc
Q 045487 392 ILGIDQSNLVGF-VPDTILNISTLKILSLFNNTFSGN 427 (729)
Q Consensus 392 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~ 427 (729)
.|+++.+++..- -.+.+.++++|..|.++++++.+.
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 666666655431 123455666677777766665433
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.05 E-value=1.4e-07 Score=92.28 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=37.4
Q ss_pred ccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCc-ccccCCcchhcCccccceEecccCcccc--cCCcc
Q 045487 484 NLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENP-LDGVLPSSIGNHSVSVEEIYMYKCNIHG--RIPKE 560 (729)
Q Consensus 484 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~ 560 (729)
.+..|+.++.+++..... .. +..--.++.+|+.+.+++|+ |+......+....+.|+.+++.+|.... .+...
T Consensus 292 ~c~~lq~l~~s~~t~~~d-~~---l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITD-EV---LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred hhhHhhhhcccCCCCCch-HH---HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 355566666655543211 00 11112345666666666663 3333333333333344444444443211 11222
Q ss_pred ccCCCCccEEEccCCc
Q 045487 561 IGSLINLTTLGLGDNN 576 (729)
Q Consensus 561 ~~~l~~L~~L~l~~~~ 576 (729)
-.+++.|+++.++.|.
T Consensus 368 s~~C~~lr~lslshce 383 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCE 383 (483)
T ss_pred ccCCchhccCChhhhh
Confidence 2344444444444443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=1.4e-05 Score=80.94 Aligned_cols=132 Identities=19% Similarity=0.305 Sum_probs=81.2
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECc
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMN 621 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 621 (729)
.++.|++++|.+. .+|. -.++|++|.+++|.-...+|+.+ .++|+.|++++|.....+| ++|+.|+++
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~ 120 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIK 120 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEEeC
Confidence 7888999988554 4452 23468999998876555666655 3588899998884222333 357777777
Q ss_pred CCccc--cccChhhcCCCCCCEEECcCCc-Cc-cCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCc
Q 045487 622 GNKLS--GSIPSCLGDLNSLRILSLSSNE-LT-SIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNR 696 (729)
Q Consensus 622 ~n~~~--~~~~~~l~~l~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~ 696 (729)
++... +.+| ++|+.|.+.+++ .. ..+|.. -.++|+.|++++|... ..|..+. .+|+.|+++.+.
T Consensus 121 ~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 121 GSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 66543 1233 346677765432 11 111111 1267888888888865 3444444 578888887763
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=4.7e-07 Score=74.54 Aligned_cols=138 Identities=21% Similarity=0.282 Sum_probs=97.2
Q ss_pred CccEEEccCCccccc--CCccccccccCceEecCCCcccccCChhcc-CCCCCCEEECcCCccccccChhhcCCCCCCEE
Q 045487 566 NLTTLGLGDNNLSGS--LPMTLGRLKKLQGLYLQNNKFEGPIPQEFC-HFSRLYEVDMNGNKLSGSIPSCLGDLNSLRIL 642 (729)
Q Consensus 566 ~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 642 (729)
.+..++|+.|++... .+..+.....|+..+|++|.+. .+|..|. .++.++.+++++|.+. .+|+.+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 345578888877522 2233455567788899999988 4455554 4568899999999998 666678999999999
Q ss_pred ECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccccccccccc
Q 045487 643 SLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVG 707 (729)
Q Consensus 643 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~ 707 (729)
+++.|++.. .|..+..+.++-.|+...|.+. .+|..+.-....-..++.++.+.+.-+..++.
T Consensus 106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 106 NLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred ccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 999999874 6777777888888998888876 45544433333444456677777666655443
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=2.5e-06 Score=79.95 Aligned_cols=205 Identities=17% Similarity=0.161 Sum_probs=107.2
Q ss_pred ccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccC
Q 045487 484 NLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGS 563 (729)
Q Consensus 484 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 563 (729)
.++.++.+++.+|.+++... +...+.++|.|+.|+++.|++...+- ..| ..
T Consensus 69 ~~~~v~elDL~~N~iSdWse----I~~ile~lP~l~~LNls~N~L~s~I~----------------------~lp---~p 119 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE----IGAILEQLPALTTLNLSCNSLSSDIK----------------------SLP---LP 119 (418)
T ss_pred HhhhhhhhhcccchhccHHH----HHHHHhcCccceEeeccCCcCCCccc----------------------cCc---cc
Confidence 45667777777777765422 33455666777777777776543221 111 12
Q ss_pred CCCccEEEccCCccccc-CCccccccccCceEecCCCcccccC--ChhccCC-CCCCEEECcCCccccc--cChhhcCCC
Q 045487 564 LINLTTLGLGDNNLSGS-LPMTLGRLKKLQGLYLQNNKFEGPI--PQEFCHF-SRLYEVDMNGNKLSGS--IPSCLGDLN 637 (729)
Q Consensus 564 l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l-~~L~~L~l~~n~~~~~--~~~~l~~l~ 637 (729)
..+|++|.+.+..+.=. ....+..+|.++.|.++.|.+.... ....... +.+++|+...|....- .-.--.-++
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 34566666665554311 1223344556666666666432211 1111112 2455555555543310 001112245
Q ss_pred CCCEEECcCCcCccCC-ChhhhccCCCCEEeCCCCcCcc-cCCccCcCCCCCCEEeCCCCccccccccc------cccCC
Q 045487 638 SLRILSLSSNELTSII-PSTFWNLEDILSFDFSSNSLNG-SLPLEIGNLKAVVNIDLSWNRLSGNIPST------IVGLK 709 (729)
Q Consensus 638 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~ls~n~~~~~~p~~------l~~l~ 709 (729)
++..+-+..|++.... .+.+...+.+.-|+|+.|++.. .--+++..+++|..|.++++++.+....+ ++.++
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 6666677777665442 2455566666677777777652 11145667777777777777776554322 34566
Q ss_pred CCCeeecc
Q 045487 710 NLQRLSLK 717 (729)
Q Consensus 710 ~L~~l~l~ 717 (729)
+++.|+-+
T Consensus 280 ~v~vLNGs 287 (418)
T KOG2982|consen 280 KVQVLNGS 287 (418)
T ss_pred ceEEecCc
Confidence 66666543
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=2.5e-05 Score=79.08 Aligned_cols=137 Identities=18% Similarity=0.274 Sum_probs=61.0
Q ss_pred hccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccC
Q 045487 512 LVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKL 591 (729)
Q Consensus 512 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 591 (729)
+..+..++.|++++|.+.. +| ..+.+|++|.+++|.....+|..+ .++|++|++++|.....+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------ccc
Confidence 3344555555555554332 22 234456666666555544455433 2356666666653221233 234
Q ss_pred ceEecCCCcccccCChhccCC-CCCCEEECcCCccc--cccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeC
Q 045487 592 QGLYLQNNKFEGPIPQEFCHF-SRLYEVDMNGNKLS--GSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDF 668 (729)
Q Consensus 592 ~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 668 (729)
+.|+++++.... +..+ ++|+.|.+.+++.. ..+|..++ ++|++|++++|.... .|+.+. .+|+.|++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNII-LPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCccc-Cccccc--ccCcEEEe
Confidence 555554443221 1111 23455555432211 01111111 456666666665442 333322 45666666
Q ss_pred CCC
Q 045487 669 SSN 671 (729)
Q Consensus 669 ~~n 671 (729)
+.|
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 655
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.3e-05 Score=53.46 Aligned_cols=37 Identities=43% Similarity=0.697 Sum_probs=25.8
Q ss_pred CCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCC
Q 045487 120 TKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLT 157 (729)
Q Consensus 120 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 157 (729)
++|++|++++|+++ .+|..+++|++|++|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46777777777777 56666777777888877777766
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=3.9e-05 Score=51.10 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=6.6
Q ss_pred hcCCCCCCEEECcCCcC
Q 045487 633 LGDLNSLRILSLSSNEL 649 (729)
Q Consensus 633 l~~l~~L~~L~l~~n~l 649 (729)
+.++++|++|++++|++
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 33333333333333333
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=8.2e-05 Score=66.12 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=55.0
Q ss_pred CccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCcccccc-ChhhcCCCCCCEEEC
Q 045487 566 NLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSI-PSCLGDLNSLRILSL 644 (729)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l 644 (729)
....+|+++|.+... +.|..++.|.+|.+++|.++.+.|.--..+++|+.|.+.+|.+.... -.-+..|+.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 445566666666522 24555666666666666666444433334556666666666654221 122455566666666
Q ss_pred cCCcCccCCC---hhhhccCCCCEEeCCCCc
Q 045487 645 SSNELTSIIP---STFWNLEDILSFDFSSNS 672 (729)
Q Consensus 645 ~~n~l~~~~~---~~~~~l~~L~~L~L~~n~ 672 (729)
-+|+++...- -.+..+++|+.||+.+=.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 6666543311 123345555555555443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=1.4e-05 Score=88.33 Aligned_cols=136 Identities=23% Similarity=0.319 Sum_probs=82.8
Q ss_pred CCCcEEEccCCc-ccccCCcchhcCccccceEecccCcccc-cCCccccCCCCccEEEccCCcccccCCccccccccCce
Q 045487 516 KSLKVIVLSENP-LDGVLPSSIGNHSVSVEEIYMYKCNIHG-RIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQG 593 (729)
Q Consensus 516 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 593 (729)
.+|+.|+|++.. +...+|..++...|+|+.|.+.+-.+.. .+.....++|+|..||+|+++++.. .+++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 456666666652 3334445555555566666666644422 2233356778888888888888743 56777888888
Q ss_pred EecCCCcccc-cCChhccCCCCCCEEECcCCcccccc------ChhhcCCCCCCEEECcCCcCccCC
Q 045487 594 LYLQNNKFEG-PIPQEFCHFSRLYEVDMNGNKLSGSI------PSCLGDLNSLRILSLSSNELTSII 653 (729)
Q Consensus 594 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~l~~l~~L~~L~l~~n~l~~~~ 653 (729)
|.+.+=.+.. .....+-++++|+.||+|..+..... -++-..++.|+.||.++..+.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 8777766653 22234556788888888777654221 123344677777777776665543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=9.9e-06 Score=89.37 Aligned_cols=127 Identities=23% Similarity=0.308 Sum_probs=63.7
Q ss_pred cccCceEecCCCccccc-CChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCcc-CCChhhhccCCCCE
Q 045487 588 LKKLQGLYLQNNKFEGP-IPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTS-IIPSTFWNLEDILS 665 (729)
Q Consensus 588 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 665 (729)
+|+|+.|.+++-.+... ..+...++|+|..||+|+++++.. .+++.+++|+.|.+.+=.+.. ..-..+-.+++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 45555555555444321 122233455666666666665522 445555666666555544432 12233445566666
Q ss_pred EeCCCCcCcccC------CccCcCCCCCCEEeCCCCcccccccccccc-CCCCCeeec
Q 045487 666 FDFSSNSLNGSL------PLEIGNLKAVVNIDLSWNRLSGNIPSTIVG-LKNLQRLSL 716 (729)
Q Consensus 666 L~L~~n~l~~~~------~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~-l~~L~~l~l 716 (729)
||+|........ -++-..+|.|+.||.|++.+....-+.+.+ -++|+.+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 666665543111 112233677777777777776554433332 345554443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=0.00012 Score=65.19 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=77.8
Q ss_pred cEEEccCCcccccCCccccc-cccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcC
Q 045487 568 TTLGLGDNNLSGSLPMTLGR-LKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSS 646 (729)
Q Consensus 568 ~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 646 (729)
+.+++++.++.... .++. ..+...+++++|.+... ..|..++.|.+|.+.+|+|+.+.|.--.-++.|+.|.+.+
T Consensus 22 ~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchh--hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 44566665554211 1211 34566778888877643 3566677788888888888866665555567788888888
Q ss_pred CcCccCC-ChhhhccCCCCEEeCCCCcCcccCC---ccCcCCCCCCEEeCCCCcc
Q 045487 647 NELTSII-PSTFWNLEDILSFDFSSNSLNGSLP---LEIGNLKAVVNIDLSWNRL 697 (729)
Q Consensus 647 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~ls~n~~ 697 (729)
|++.... -.-+..|+.|+.|.+-+|+....-. -.+..+|+|+.||+.+=..
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 8765431 2345567777788877777653222 1245667777777665443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.59 E-value=0.00018 Score=62.31 Aligned_cols=121 Identities=16% Similarity=0.222 Sum_probs=41.0
Q ss_pred ccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCC
Q 045487 585 LGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDIL 664 (729)
Q Consensus 585 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 664 (729)
|.++++|+.+.+.. .+.......|.++++|+.+++.++ +......+|.++++++.+++.. .+.......|..++.|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34444444444442 233233334444444555555443 3333334455554555555543 33333344455555555
Q ss_pred EEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCC
Q 045487 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNL 711 (729)
Q Consensus 665 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L 711 (729)
.+++..+ +.......+.+. .|+.+.+.. .+.......|.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555443 332333334443 555555544 2222333445555444
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.45 E-value=0.00033 Score=60.62 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=54.0
Q ss_pred cccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCC
Q 045487 560 EIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSL 639 (729)
Q Consensus 560 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 639 (729)
.|..+++|+.+.+.+ .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+......+|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 355566666666664 344344555666666777776654 4434444556666677777755 3333444556666777
Q ss_pred CEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCC
Q 045487 640 RILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAV 687 (729)
Q Consensus 640 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 687 (729)
+.+++..+ +.......|..+ .|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77777654 555555666665 677776665 3332334445555444
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00062 Score=63.54 Aligned_cols=87 Identities=23% Similarity=0.311 Sum_probs=35.8
Q ss_pred CCCCccEEEccCCcccccCCccccccccCceEecCCC--cccccCChhccCCCCCCEEECcCCccccc-cChhhcCCCCC
Q 045487 563 SLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNN--KFEGPIPQEFCHFSRLYEVDMNGNKLSGS-IPSCLGDLNSL 639 (729)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L 639 (729)
.+..|+.|++.++.++.. ..+..+++|++|.++.| +.++....-...+|+|+++++++|++... .-..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 333444444444444411 12333445555555555 33322222222335555555555554410 01123334445
Q ss_pred CEEECcCCcCcc
Q 045487 640 RILSLSSNELTS 651 (729)
Q Consensus 640 ~~L~l~~n~l~~ 651 (729)
..|++.+|..+.
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 555555554443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00085 Score=62.63 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=79.6
Q ss_pred hccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCC--cCccCCChhhhccCCCCEEeCCCCcCcc-cCCccCcCC
Q 045487 608 EFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSN--ELTSIIPSTFWNLEDILSFDFSSNSLNG-SLPLEIGNL 684 (729)
Q Consensus 608 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l 684 (729)
....+..|+.|.+.+++++. . ..+..++.|++|.++.| ++.+..+--...+++|+++++++|++.. .--..+..+
T Consensus 38 l~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 33455678888888888873 2 35677889999999999 7766666666677999999999999862 111245677
Q ss_pred CCCCEEeCCCCccccccc---cccccCCCCCeeeccCC
Q 045487 685 KAVVNIDLSWNRLSGNIP---STIVGLKNLQRLSLKHN 719 (729)
Q Consensus 685 ~~L~~L~ls~n~~~~~~p---~~l~~l~~L~~l~l~~n 719 (729)
.+|..|++.+|..+.... ..|.-+++|++++-...
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 788899999999876332 33556788888876544
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.69 E-value=0.00022 Score=77.86 Aligned_cols=113 Identities=26% Similarity=0.169 Sum_probs=55.0
Q ss_pred CCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCC-cCcccC----CcchhcCCCCcEEEccCCc-ceeccCcccc
Q 045487 410 NISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLN-NFSGSI----PSFCFNASKLYALELGYNS-FSGLIPEALG 483 (729)
Q Consensus 410 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~ 483 (729)
.++.|+.+.+.++..............++.|+.|+++++ ...... ......+.+|+.++++.+. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367888888887743322111122334778888888773 211111 1223344566666666655 3322222222
Q ss_pred -ccCCCcEEeccCCc-ccCCcchhhhhhhhhccCCCCcEEEccCCc
Q 045487 484 -NLRNLKRLGLRRNY-LTSSTSELMSFFSALVNCKSLKVIVLSENP 527 (729)
Q Consensus 484 -~l~~L~~L~l~~~~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 527 (729)
.+++|+.|.+.+|. +++.. +......++.|++++++.|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~g-----l~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEG-----LVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhH-----HHHHHHhcCcccEEeeecCc
Confidence 25566666655554 23221 22333445556666665553
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.62 E-value=0.00019 Score=78.40 Aligned_cols=237 Identities=20% Similarity=0.139 Sum_probs=108.8
Q ss_pred CCCCcEEECCCCcCccc--CCcchhcCCCCcEEEccCC-cceecc----CccccccCCCcEEeccCCc-ccCCcchhhhh
Q 045487 437 LPNLELLNLGLNNFSGS--IPSFCFNASKLYALELGYN-SFSGLI----PEALGNLRNLKRLGLRRNY-LTSSTSELMSF 508 (729)
Q Consensus 437 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n-~~~~~~----~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~ 508 (729)
+++|+.+.+.++.-... .......++.|+.++++++ ...... ......+++|+.+++..+. +++..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~------ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG------ 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh------
Confidence 67778887777744332 2244556777777777763 111111 1233455667777777666 33321
Q ss_pred hhhh-ccCCCCcEEEccCCc-ccccCCcchhcCccccceEecccCccccc--CCccccCCCCccEEEccCCcccccCCcc
Q 045487 509 FSAL-VNCKSLKVIVLSENP-LDGVLPSSIGNHSVSVEEIYMYKCNIHGR--IPKEIGSLINLTTLGLGDNNLSGSLPMT 584 (729)
Q Consensus 509 ~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 584 (729)
...+ ..|++|+.+.+.+|. +++..-..+....+.|++|++++|..... +......+++++.|.+....-
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------- 333 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------- 333 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------
Confidence 1122 226667776666664 34333333333333455555555543211 111122333333332221111
Q ss_pred ccccccCceEecCCCccc---ccCChhccCCCCCCEEECcCCcccccc-ChhhcCCCCCCEEECcCCcCccCCChhhhcc
Q 045487 585 LGRLKKLQGLYLQNNKFE---GPIPQEFCHFSRLYEVDMNGNKLSGSI-PSCLGDLNSLRILSLSSNELTSIIPSTFWNL 660 (729)
Q Consensus 585 l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 660 (729)
++.++.+.+.++.-. .........+++++.+.+..+...... ...+.+++.|+ ..+.. .....
T Consensus 334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~ 400 (482)
T KOG1947|consen 334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRS 400 (482)
T ss_pred ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccC
Confidence 333333333333221 112223345677777777777733222 13334444441 11111 11111
Q ss_pred CCCCEEeCCCCcCccc-CCccCcC-CCCCCEEeCCCCcccc
Q 045487 661 EDILSFDFSSNSLNGS-LPLEIGN-LKAVVNIDLSWNRLSG 699 (729)
Q Consensus 661 ~~L~~L~L~~n~l~~~-~~~~l~~-l~~L~~L~ls~n~~~~ 699 (729)
..++.|+++.+..... .-..... +..++.+++.++....
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 2277888887774321 1111111 4566777777776643
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00026 Score=66.15 Aligned_cols=79 Identities=34% Similarity=0.399 Sum_probs=38.9
Q ss_pred CcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCc
Q 045487 440 LELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLK 519 (729)
Q Consensus 440 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 519 (729)
.+.|+..+|.+.++ ..+..++.|+.|.++-|.++...| +.+|++|++|+++.|.+.+.+. ...+.++++|+
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-----L~YLknlpsLr 91 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-----LEYLKNLPSLR 91 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-----HHHHhcCchhh
Confidence 33444444444322 233444555555555555544433 5556666666666666555422 13445555555
Q ss_pred EEEccCCc
Q 045487 520 VIVLSENP 527 (729)
Q Consensus 520 ~L~l~~~~ 527 (729)
.|-+..|+
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 55555554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.00049 Score=64.35 Aligned_cols=100 Identities=19% Similarity=0.224 Sum_probs=76.0
Q ss_pred CCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCC-ccCcCCCCCCEE
Q 045487 612 FSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLP-LEIGNLKAVVNI 690 (729)
Q Consensus 612 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L 690 (729)
+.+.+.|++.+|+++.+. ....++.|+.|.|+-|.|+.. ..|..|+.|++|+|..|.|..... .-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 567788999999988432 246678999999999999876 557889999999999999863222 235788999999
Q ss_pred eCCCCcccccccc-----ccccCCCCCeee
Q 045487 691 DLSWNRLSGNIPS-----TIVGLKNLQRLS 715 (729)
Q Consensus 691 ~ls~n~~~~~~p~-----~l~~l~~L~~l~ 715 (729)
.|..|+=.|..+. .+-.+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999988766543 244678888876
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.25 E-value=0.0078 Score=33.11 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=9.5
Q ss_pred CCEEeCCCCccccccccccc
Q 045487 687 VVNIDLSWNRLSGNIPSTIV 706 (729)
Q Consensus 687 L~~L~ls~n~~~~~~p~~l~ 706 (729)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.99 E-value=0.00017 Score=76.33 Aligned_cols=89 Identities=22% Similarity=0.245 Sum_probs=41.6
Q ss_pred CcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhc----CccccceEecccCccccc----CCc
Q 045487 488 LKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGN----HSVSVEEIYMYKCNIHGR----IPK 559 (729)
Q Consensus 488 L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~ 559 (729)
+..+.+.+|.+.+...+ .+...+...+.|..+++++|.+.+.....+.. ....+++|++..|.+... +..
T Consensus 89 l~~L~L~~~~l~~~~~~--~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAE--ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHH--HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34444444444433211 13345555556666666666554322211111 011444455555554432 333
Q ss_pred cccCCCCccEEEccCCccc
Q 045487 560 EIGSLINLTTLGLGDNNLS 578 (729)
Q Consensus 560 ~~~~l~~L~~L~l~~~~~~ 578 (729)
.+....+++.++++.|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHhcccchhHHHHHhcccc
Confidence 3445667777777777664
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.84 E-value=0.0002 Score=75.74 Aligned_cols=83 Identities=19% Similarity=0.192 Sum_probs=37.2
Q ss_pred CcEEEccCCcccccCCcchh----cCccccceEecccCccccc----CCccccCC-CCccEEEccCCccccc----CCcc
Q 045487 518 LKVIVLSENPLDGVLPSSIG----NHSVSVEEIYMYKCNIHGR----IPKEIGSL-INLTTLGLGDNNLSGS----LPMT 584 (729)
Q Consensus 518 L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~ 584 (729)
+..+.+.+|.+.......+. ..+ .++.|++++|.+.+. +...+... ..++.|++..|.+++. +...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~-~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLP-TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccc-cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 56666777766544332222 122 555555555554421 11112222 3344455555554422 2233
Q ss_pred ccccccCceEecCCCcc
Q 045487 585 LGRLKKLQGLYLQNNKF 601 (729)
Q Consensus 585 l~~l~~L~~L~l~~n~l 601 (729)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 33345555555555544
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.83 E-value=0.011 Score=32.48 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=8.7
Q ss_pred CceeeccCCcCCCcCccccc
Q 045487 122 LKELRLRYNKLQGEIPEELG 141 (729)
Q Consensus 122 L~~L~L~~~~~~~~~p~~~~ 141 (729)
|++||+++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444444444444 4444443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.72 E-value=0.0053 Score=56.06 Aligned_cols=85 Identities=16% Similarity=0.122 Sum_probs=69.2
Q ss_pred CCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEE
Q 045487 70 YGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVL 149 (729)
Q Consensus 70 ~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 149 (729)
+..+|+.||++.+.+. .+-..++.++.+..|+++.+.+. ..|..+.....++.+++.+|..+ ..|.+++..++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3568899998877654 23344666778888999988876 67888888899999999888888 889999999999999
Q ss_pred EccCCcCC
Q 045487 150 VLNNNLLT 157 (729)
Q Consensus 150 ~l~~~~~~ 157 (729)
++..+.++
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99888765
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.72 E-value=0.12 Score=26.21 Aligned_cols=13 Identities=54% Similarity=0.595 Sum_probs=5.2
Q ss_pred CCCEEEccCCcCC
Q 045487 145 ELEVLVLNNNLLT 157 (729)
Q Consensus 145 ~L~~L~l~~~~~~ 157 (729)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.78 E-value=0.047 Score=49.21 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=33.0
Q ss_pred cceEecccCcccccCCccccCCCCccEEEccCCcccccCC-ccc-cccccCceEecCCCc-ccccCChhccCCCCCCEEE
Q 045487 543 VEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLP-MTL-GRLKKLQGLYLQNNK-FEGPIPQEFCHFSRLYEVD 619 (729)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l-~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 619 (729)
++.++-+++.+...--..+..+++++.|.+.+|.-.+..- +.+ +-.++|+.|+|++|. |+.....++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3444444444433333334444455555555554221100 000 123455555555442 4443344444445555544
Q ss_pred CcC
Q 045487 620 MNG 622 (729)
Q Consensus 620 l~~ 622 (729)
+++
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 444
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.64 E-value=0.046 Score=49.25 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=17.9
Q ss_pred CCccEEEccCCc-ccccCCccccccccCceEecCCC
Q 045487 565 INLTTLGLGDNN-LSGSLPMTLGRLKKLQGLYLQNN 599 (729)
Q Consensus 565 ~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n 599 (729)
++|+.|++++|. ++..--.++..+++|+.|.+.+-
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 455556666554 33223344555566666655443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.56 E-value=0.12 Score=29.03 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=10.0
Q ss_pred CCCCEEeCCCCcccccccc
Q 045487 685 KAVVNIDLSWNRLSGNIPS 703 (729)
Q Consensus 685 ~~L~~L~ls~n~~~~~~p~ 703 (729)
++|+.|+|++|++++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4566666666666655443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.92 E-value=0.45 Score=27.27 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=10.8
Q ss_pred CCCCEEEccCCcCCCCCCcc
Q 045487 144 AELEVLVLNNNLLTGTIPAS 163 (729)
Q Consensus 144 ~~L~~L~l~~~~~~~~~p~~ 163 (729)
++|++|++++|.+. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666665 44443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.92 E-value=0.45 Score=27.27 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=10.8
Q ss_pred CCCCEEEccCCcCCCCCCcc
Q 045487 144 AELEVLVLNNNLLTGTIPAS 163 (729)
Q Consensus 144 ~~L~~L~l~~~~~~~~~p~~ 163 (729)
++|++|++++|.+. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666665 44443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.64 E-value=0.024 Score=51.96 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEE
Q 045487 611 HFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNI 690 (729)
Q Consensus 611 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 690 (729)
....-+.||++.|++- -.-..|+-++.|..|+++.|.+. ..|..+.+...+..+++..|.++ ..|..+...|.++.+
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3344445555555543 12222333444445555544443 34444444444444444444443 344444444444444
Q ss_pred eCCCCcc
Q 045487 691 DLSWNRL 697 (729)
Q Consensus 691 ~ls~n~~ 697 (729)
++.+|.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 4444443
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.37 E-value=0.67 Score=26.53 Aligned_cols=13 Identities=54% Similarity=0.756 Sum_probs=5.4
Q ss_pred CCCEEECcCCcCc
Q 045487 638 SLRILSLSSNELT 650 (729)
Q Consensus 638 ~L~~L~l~~n~l~ 650 (729)
+|++|++++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.37 E-value=0.67 Score=26.53 Aligned_cols=13 Identities=54% Similarity=0.756 Sum_probs=5.4
Q ss_pred CCCEEECcCCcCc
Q 045487 638 SLRILSLSSNELT 650 (729)
Q Consensus 638 ~L~~L~l~~n~l~ 650 (729)
+|++|++++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.54 E-value=2.6 Score=24.12 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=9.5
Q ss_pred CCCCeeeccCCccccCCC
Q 045487 709 KNLQRLSLKHNKLQGPIP 726 (729)
Q Consensus 709 ~~L~~l~l~~n~l~~~~p 726 (729)
++|++|++++|+++. +|
T Consensus 2 ~~L~~L~vs~N~Lt~-LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTS-LP 18 (26)
T ss_pred cccceeecCCCcccc-Cc
Confidence 345666666666544 44
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.03 E-value=6.2 Score=22.68 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=5.4
Q ss_pred CCCEEeCCCCcC
Q 045487 662 DILSFDFSSNSL 673 (729)
Q Consensus 662 ~L~~L~L~~n~l 673 (729)
+|+.|++++|++
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 344444444444
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.59 E-value=4.4 Score=23.70 Aligned_cols=13 Identities=62% Similarity=0.710 Sum_probs=6.7
Q ss_pred CCCEEECcCCcCc
Q 045487 638 SLRILSLSSNELT 650 (729)
Q Consensus 638 ~L~~L~l~~n~l~ 650 (729)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.08 E-value=40 Score=35.29 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCEEECcCCccccccC---hhhcCCCCCCEEECcCCcCccC----CChhhhccCCCCEEeCCCCcCc
Q 045487 615 LYEVDMNGNKLSGSIP---SCLGDLNSLRILSLSSNELTSI----IPSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 615 L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 674 (729)
+..+.++.|....... ..+..-+.+.+|++++|..... +|..++.-..++.+..+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 5566666666552211 1223346677777777765432 4455555556666666666543
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=45.92 E-value=98 Score=32.61 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=12.4
Q ss_pred CCCCeEeccccccCCCCCccc
Q 045487 218 KGLSSASLSFNQFTGRLPRDL 238 (729)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~~~l 238 (729)
+.+++++++.|.+....|-.+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 456667777776665544433
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.20 E-value=18 Score=20.49 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=10.1
Q ss_pred CCCCEEeCCCCc-ccc
Q 045487 685 KAVVNIDLSWNR-LSG 699 (729)
Q Consensus 685 ~~L~~L~ls~n~-~~~ 699 (729)
++|++|+|++|. +++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 567777777775 443
No 92
>PRK09718 hypothetical protein; Validated
Probab=30.55 E-value=92 Score=32.97 Aligned_cols=13 Identities=15% Similarity=0.026 Sum_probs=6.0
Q ss_pred CCCCEEeCCCCcC
Q 045487 661 EDILSFDFSSNSL 673 (729)
Q Consensus 661 ~~L~~L~L~~n~l 673 (729)
+.|+..|++.|.+
T Consensus 228 T~LkgVDFSdC~L 240 (512)
T PRK09718 228 VRISTGNFKDCIT 240 (512)
T ss_pred CcCCCcccccccc
Confidence 3444444444443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.30 E-value=29 Score=37.09 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=41.7
Q ss_pred CCCCCCEEECcCCccccccC--hhhcCCCCCCEEECcCCcCccCCChhhhcc--CCCCEEeCCCCcCccc
Q 045487 611 HFSRLYEVDMNGNKLSGSIP--SCLGDLNSLRILSLSSNELTSIIPSTFWNL--EDILSFDFSSNSLNGS 676 (729)
Q Consensus 611 ~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~ 676 (729)
+.+.+..+.+++|++..... .--...+.|+.|+|++|...-....++.++ ..|++|-+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 46778888899998763321 112335789999999983222222344433 4477888999987643
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.71 E-value=60 Score=34.82 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=20.0
Q ss_pred cCCCCcEEEccCCcceec--cCccccccCCCcEEeccCC
Q 045487 460 NASKLYALELGYNSFSGL--IPEALGNLRNLKRLGLRRN 496 (729)
Q Consensus 460 ~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~~ 496 (729)
+.+.+..+++++|++... ....-...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 455667777777776422 1112233455666666665
No 95
>PRK09718 hypothetical protein; Validated
Probab=21.34 E-value=1.4e+02 Score=31.64 Aligned_cols=11 Identities=0% Similarity=-0.088 Sum_probs=4.7
Q ss_pred CCEEECcCCcc
Q 045487 615 LYEVDMNGNKL 625 (729)
Q Consensus 615 L~~L~l~~n~~ 625 (729)
|+..|++.|.+
T Consensus 230 LkgVDFSdC~L 240 (512)
T PRK09718 230 ISTGNFKDCIT 240 (512)
T ss_pred CCCcccccccc
Confidence 44444444443
No 96
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=20.43 E-value=80 Score=29.27 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=5.5
Q ss_pred CCcEEEeecCcCc
Q 045487 267 ELEMLVLTSNLLT 279 (729)
Q Consensus 267 ~L~~L~l~~~~~~ 279 (729)
+++--.+.+|+++
T Consensus 197 N~eGA~L~gcNfe 209 (302)
T KOG1665|consen 197 NAEGASLKGCNFE 209 (302)
T ss_pred ccccccccCcCCC
Confidence 3333344444443
Done!