Query 045487
Match_columns 729
No_of_seqs 435 out of 4494
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 03:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-84 3.8E-89 744.7 49.5 686 20-728 4-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.8E-70 2E-74 623.0 46.7 632 73-723 78-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-58 7.7E-63 523.5 51.6 583 78-723 10-623 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.5E-57 2.6E-61 511.0 48.4 571 71-675 24-623 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.1E-52 7.2E-57 468.1 44.0 531 77-675 17-561 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-52 8.6E-57 467.5 42.9 535 76-700 15-560 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.4E-52 4.9E-57 469.5 39.5 515 195-725 34-563 (606)
8 4eco_A Uncharacterized protein 100.0 6.8E-53 2.3E-57 470.6 26.1 518 25-699 27-601 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 7.1E-50 2.4E-54 447.6 41.7 519 71-676 31-560 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-48 4.3E-53 451.4 41.4 518 95-674 23-560 (844)
11 3j0a_A TOLL-like receptor 5; m 100.0 7.8E-49 2.7E-53 453.1 38.9 530 101-699 9-561 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 9E-49 3.1E-53 442.9 32.0 507 24-626 265-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 2.9E-46 9.8E-51 415.7 39.9 491 96-678 28-535 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 2.2E-46 7.4E-51 416.7 34.2 512 174-727 12-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-45 4.5E-50 408.1 34.5 492 59-674 3-510 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-44 5.6E-49 399.3 34.5 493 194-726 5-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-43 5.6E-48 399.4 41.9 523 87-698 45-580 (635)
18 4eco_A Uncharacterized protein 100.0 8.1E-45 2.8E-49 405.4 23.5 328 380-723 239-601 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 1.2E-43 4.1E-48 401.1 30.4 403 228-721 435-863 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 5E-43 1.7E-47 384.3 28.2 459 75-652 3-483 (520)
21 2z7x_B TOLL-like receptor 1, v 100.0 6.7E-43 2.3E-47 383.3 25.6 455 197-699 3-482 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 2E-40 6.9E-45 374.1 42.6 564 72-724 52-630 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-40 9.9E-45 365.2 24.1 460 194-698 31-510 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-39 9.5E-44 357.3 27.5 456 75-652 34-512 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 3E-38 1E-42 340.5 31.3 380 294-702 13-412 (455)
26 1ogq_A PGIP-2, polygalacturona 100.0 8.2E-39 2.8E-43 324.8 18.8 293 24-351 2-302 (313)
27 3v47_A TOLL-like receptor 5B a 100.0 4.2E-37 1.4E-41 331.5 31.1 384 269-678 13-412 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 2.6E-37 8.8E-42 329.3 25.0 422 216-727 9-434 (454)
29 1jl5_A Outer protein YOPM; leu 100.0 3.4E-37 1.2E-41 328.4 23.7 425 194-708 11-439 (454)
30 1o6v_A Internalin A; bacterial 100.0 1.5E-34 5.2E-39 311.4 31.3 345 315-699 45-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 1.6E-33 5.5E-38 303.4 34.2 379 265-710 45-434 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 6.4E-34 2.2E-38 303.4 29.3 366 254-706 30-395 (457)
33 3bz5_A Internalin-J, INLJ; leu 100.0 7.3E-34 2.5E-38 303.0 28.0 413 229-728 29-449 (457)
34 2id5_A Lingo-1, leucine rich r 100.0 1.8E-32 6.1E-37 296.9 29.5 320 319-674 14-333 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 1.2E-32 4.3E-37 298.1 26.9 322 343-700 14-335 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 2.6E-32 9E-37 287.2 24.8 348 51-451 4-352 (390)
37 4fmz_A Internalin; leucine ric 100.0 4.2E-31 1.4E-35 273.6 29.0 306 337-722 41-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 1.5E-31 5.2E-36 296.8 25.9 346 51-452 10-359 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 1.4E-30 4.7E-35 274.0 29.6 331 339-722 44-374 (390)
40 4fmz_A Internalin; leucine ric 100.0 3.7E-30 1.3E-34 266.5 30.2 305 314-698 42-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 1E-30 3.6E-35 290.1 27.0 312 339-701 50-361 (597)
42 4fcg_A Uncharacterized protein 100.0 1.4E-31 4.9E-36 273.0 16.9 280 24-329 23-314 (328)
43 1ogq_A PGIP-2, polygalacturona 100.0 5.3E-31 1.8E-35 267.3 19.0 252 438-723 50-306 (313)
44 1z7x_W Ribonuclease inhibitor; 100.0 6.2E-33 2.1E-37 299.6 -2.8 360 293-674 5-411 (461)
45 1xku_A Decorin; proteoglycan, 100.0 1.6E-28 5.4E-33 252.0 29.2 269 438-720 52-330 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-32 5.4E-37 296.4 -0.7 379 339-722 2-440 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 1E-28 3.5E-33 253.5 27.4 288 413-720 34-331 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 6E-28 2.1E-32 247.7 26.6 288 341-696 34-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 1E-27 3.5E-32 245.9 27.0 249 97-407 32-282 (330)
50 3ogk_B Coronatine-insensitive 100.0 1.4E-29 4.7E-34 282.6 3.6 379 264-676 110-528 (592)
51 2z80_A TOLL-like receptor 2, v 99.9 1.4E-27 4.8E-32 247.3 16.1 287 52-403 22-316 (353)
52 3ogk_B Coronatine-insensitive 99.9 1.6E-29 5.5E-34 282.0 1.5 376 315-700 111-528 (592)
53 2z66_A Variable lymphocyte rec 99.9 2.2E-26 7.4E-31 233.4 22.1 276 415-727 10-292 (306)
54 4fcg_A Uncharacterized protein 99.9 1.6E-26 5.3E-31 235.7 20.1 203 515-722 103-314 (328)
55 2z66_A Variable lymphocyte rec 99.9 2.7E-26 9.3E-31 232.7 20.3 283 391-709 10-298 (306)
56 2z80_A TOLL-like receptor 2, v 99.9 1.1E-26 3.6E-31 240.7 16.7 279 411-702 30-318 (353)
57 3zyj_A Leucine-rich repeat-con 99.9 3.5E-25 1.2E-29 236.5 23.9 246 440-697 45-291 (440)
58 3o53_A Protein LRIM1, AGAP0063 99.9 6.3E-27 2.2E-31 238.0 9.5 245 437-726 33-280 (317)
59 3zyi_A Leucine-rich repeat-con 99.9 4.4E-25 1.5E-29 236.5 24.1 247 440-722 56-303 (452)
60 1ozn_A Reticulon 4 receptor; N 99.9 4.1E-25 1.4E-29 221.4 22.1 252 465-727 14-266 (285)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-25 6.2E-30 224.0 18.8 268 415-719 14-284 (285)
62 1wwl_A Monocyte differentiatio 99.9 9.4E-27 3.2E-31 236.2 8.7 203 514-723 93-310 (312)
63 2p1m_B Transport inhibitor res 99.9 7.7E-28 2.6E-32 268.6 -1.8 394 315-719 104-541 (594)
64 1wwl_A Monocyte differentiatio 99.9 2.5E-26 8.7E-31 233.0 6.5 247 96-401 43-309 (312)
65 3zyj_A Leucine-rich repeat-con 99.9 7E-24 2.4E-28 226.3 25.7 228 438-674 64-292 (440)
66 2p1m_B Transport inhibitor res 99.9 5.7E-27 2E-31 261.6 1.4 225 264-494 103-346 (594)
67 3zyi_A Leucine-rich repeat-con 99.9 8.1E-24 2.8E-28 226.7 25.5 228 438-674 75-303 (452)
68 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-24 5E-29 237.6 19.1 286 51-408 13-304 (622)
69 3oja_A Leucine-rich immune mol 99.9 4E-25 1.4E-29 237.7 12.7 236 437-717 33-270 (487)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-23 7.9E-28 228.2 25.3 269 388-709 40-308 (622)
71 2o6q_A Variable lymphocyte rec 99.9 1.9E-23 6.4E-28 207.2 20.7 217 57-304 2-218 (270)
72 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-24 4.2E-29 221.1 12.2 196 512-722 54-250 (317)
73 3rfs_A Internalin B, repeat mo 99.9 9.2E-24 3.1E-28 209.5 17.0 210 482-709 37-246 (272)
74 2o6q_A Variable lymphocyte rec 99.9 8.4E-23 2.9E-27 202.5 22.2 202 518-723 18-219 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 3.9E-23 1.3E-27 205.9 19.4 207 518-726 30-241 (276)
76 3oja_A Leucine-rich immune mol 99.9 7.2E-24 2.4E-28 228.0 11.0 237 410-693 32-270 (487)
77 1p9a_G Platelet glycoprotein I 99.9 3.5E-22 1.2E-26 199.5 20.6 177 542-722 32-208 (290)
78 2z62_A TOLL-like receptor 4, v 99.9 7.8E-22 2.7E-26 196.5 19.6 213 87-354 21-238 (276)
79 3rfs_A Internalin B, repeat mo 99.9 9.4E-22 3.2E-26 195.0 18.8 223 487-729 20-242 (272)
80 4glp_A Monocyte differentiatio 99.9 6E-22 2E-26 200.7 17.5 227 487-723 65-308 (310)
81 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.1E-28 220.6 4.3 251 453-724 23-318 (386)
82 3goz_A Leucine-rich repeat-con 99.9 6.3E-23 2.2E-27 212.7 9.1 260 442-703 2-302 (362)
83 3m19_A Variable lymphocyte rec 99.9 2.6E-21 9E-26 189.4 19.6 181 516-700 14-194 (251)
84 3m19_A Variable lymphocyte rec 99.9 1.5E-21 5.2E-26 191.1 17.2 192 58-281 3-194 (251)
85 3goz_A Leucine-rich repeat-con 99.9 9.4E-23 3.2E-27 211.4 8.7 260 416-679 2-302 (362)
86 2ast_B S-phase kinase-associat 99.9 7.9E-23 2.7E-27 210.4 8.0 251 439-727 48-311 (336)
87 1p9a_G Platelet glycoprotein I 99.9 8.1E-21 2.8E-25 189.6 20.5 202 459-698 7-208 (290)
88 2ca6_A RAN GTPase-activating p 99.9 9.8E-23 3.3E-27 213.7 5.7 253 436-702 30-320 (386)
89 1h6u_A Internalin H; cell adhe 99.9 8.3E-21 2.8E-25 191.6 18.1 146 542-699 86-231 (308)
90 2ast_B S-phase kinase-associat 99.8 8.6E-22 2.9E-26 202.6 8.0 254 412-706 47-314 (336)
91 2xwt_C Thyrotropin receptor; s 99.8 1.2E-20 4E-25 183.5 14.8 197 517-720 32-237 (239)
92 2xwt_C Thyrotropin receptor; s 99.8 1.5E-20 5E-25 182.8 14.1 184 540-727 30-222 (239)
93 1h6u_A Internalin H; cell adhe 99.8 8.5E-20 2.9E-24 184.2 18.6 192 437-675 40-231 (308)
94 2o6s_A Variable lymphocyte rec 99.8 6.2E-20 2.1E-24 174.1 14.7 175 542-727 29-203 (208)
95 2o6s_A Variable lymphocyte rec 99.8 1.6E-19 5.5E-24 171.3 15.6 175 545-729 11-185 (208)
96 4glp_A Monocyte differentiatio 99.8 5.4E-20 1.9E-24 186.3 12.3 134 120-279 64-210 (310)
97 3cvr_A Invasion plasmid antige 99.8 2.9E-19 1E-23 193.1 14.8 188 487-709 60-254 (571)
98 3cvr_A Invasion plasmid antige 99.8 2.9E-19 9.8E-24 193.2 14.3 207 51-289 34-253 (571)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 9.1E-19 3.1E-23 167.0 16.1 153 544-699 14-167 (220)
100 2v9t_B SLIT homolog 2 protein 99.8 1.1E-18 3.6E-23 166.6 16.1 152 544-698 14-165 (220)
101 4ay9_X Follicle-stimulating ho 99.8 4.6E-18 1.6E-22 175.1 17.9 201 99-329 12-215 (350)
102 3e6j_A Variable lymphocyte rec 99.8 4.8E-18 1.6E-22 163.2 16.4 155 542-700 20-174 (229)
103 2xot_A Amphoterin-induced prot 99.8 2.7E-18 9.2E-23 177.6 14.5 158 566-723 40-203 (361)
104 1h6t_A Internalin B; cell adhe 99.8 6.7E-18 2.3E-22 168.6 16.9 173 512-699 42-214 (291)
105 4ay9_X Follicle-stimulating ho 99.8 8E-18 2.7E-22 173.3 17.2 202 512-719 50-256 (350)
106 4ezg_A Putative uncharacterize 99.8 4.7E-18 1.6E-22 159.4 12.9 155 562-723 41-195 (197)
107 3e6j_A Variable lymphocyte rec 99.7 1.4E-17 4.7E-22 160.0 15.7 163 51-255 10-172 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 1.9E-17 6.4E-22 157.9 16.3 154 519-676 14-168 (220)
109 2v9t_B SLIT homolog 2 protein 99.7 2E-17 6.8E-22 157.7 16.1 152 519-674 14-165 (220)
110 1h6t_A Internalin B; cell adhe 99.7 9.9E-18 3.4E-22 167.4 14.5 187 466-675 28-214 (291)
111 1m9s_A Internalin B; cell inva 99.7 4.7E-17 1.6E-21 178.1 18.5 172 460-676 41-212 (605)
112 1m9s_A Internalin B; cell inva 99.7 2.9E-17 1E-21 179.8 15.6 189 466-701 25-213 (605)
113 4b8c_D Glucose-repressible alc 99.7 1.6E-18 5.3E-23 195.0 5.5 229 26-309 130-359 (727)
114 2xot_A Amphoterin-induced prot 99.7 2.4E-17 8.2E-22 170.4 13.7 157 542-698 40-202 (361)
115 4ezg_A Putative uncharacterize 99.7 4E-17 1.4E-21 153.0 13.8 150 542-699 45-195 (197)
116 1xeu_A Internalin C; cellular 99.7 2.7E-17 9.3E-22 161.4 11.5 167 517-699 20-186 (263)
117 1w8a_A SLIT protein; signaling 99.7 2.5E-16 8.5E-21 146.6 13.4 157 568-728 11-168 (192)
118 1w8a_A SLIT protein; signaling 99.7 1.8E-16 6.2E-21 147.6 11.5 176 542-724 9-185 (192)
119 2ell_A Acidic leucine-rich nuc 99.7 2.5E-16 8.6E-21 143.5 11.3 132 565-698 24-160 (168)
120 1xeu_A Internalin C; cellular 99.7 1E-16 3.4E-21 157.4 9.3 124 542-676 64-187 (263)
121 1dce_A Protein (RAB geranylger 99.7 2.8E-18 9.6E-23 186.8 -3.3 122 590-716 442-567 (567)
122 3sb4_A Hypothetical leucine ri 99.7 2.4E-16 8.2E-21 160.8 10.6 103 588-692 225-328 (329)
123 2ell_A Acidic leucine-rich nuc 99.7 4.4E-16 1.5E-20 141.8 11.2 137 588-727 23-164 (168)
124 1dce_A Protein (RAB geranylger 99.6 7.7E-18 2.6E-22 183.3 -1.7 197 513-727 346-551 (567)
125 2je0_A Acidic leucine-rich nuc 99.6 6E-16 2.1E-20 137.8 10.3 127 589-717 17-148 (149)
126 3sb4_A Hypothetical leucine ri 99.6 3.5E-16 1.2E-20 159.6 9.3 228 184-418 83-327 (329)
127 2wfh_A SLIT homolog 2 protein 99.6 2.9E-15 1E-19 139.2 14.1 128 568-699 13-140 (193)
128 2je0_A Acidic leucine-rich nuc 99.6 7.4E-16 2.5E-20 137.2 9.2 127 565-693 17-148 (149)
129 4b8c_D Glucose-repressible alc 99.6 2.5E-16 8.4E-21 177.2 6.9 177 516-703 173-359 (727)
130 2o6r_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 136.3 13.5 134 566-702 8-141 (177)
131 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.7E-19 134.1 14.5 129 543-675 12-140 (193)
132 4fs7_A Uncharacterized protein 99.6 2E-13 6.9E-18 142.8 23.6 147 559-714 247-393 (394)
133 2o6r_A Variable lymphocyte rec 99.6 2.4E-14 8.2E-19 131.5 14.2 134 542-678 8-141 (177)
134 4fdw_A Leucine rich hypothetic 99.5 3.8E-13 1.3E-17 139.8 22.7 264 411-720 112-381 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5.1E-19 132.6 10.7 133 561-698 15-153 (176)
136 1ds9_A Outer arm dynein; leuci 99.5 2.5E-16 8.5E-21 147.7 -5.0 153 564-723 17-186 (198)
137 1a9n_A U2A', U2A'; complex (nu 99.5 4.2E-14 1.4E-18 129.6 9.8 133 584-722 14-153 (176)
138 4fdw_A Leucine rich hypothetic 99.5 2.1E-12 7E-17 134.2 22.1 247 437-727 112-363 (401)
139 4fs7_A Uncharacterized protein 99.5 3.8E-12 1.3E-16 133.1 23.4 150 562-719 227-376 (394)
140 3g39_A Variable lymphocyte rec 99.4 4.2E-13 1.4E-17 121.8 11.5 108 590-700 10-117 (170)
141 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 4.8E-20 142.5 -5.2 133 560-699 43-186 (198)
142 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 119.5 11.8 105 592-699 15-119 (174)
143 3g39_A Variable lymphocyte rec 99.4 2.4E-12 8E-17 116.8 12.1 108 566-676 10-117 (170)
144 3un9_A NLR family member X1; l 99.4 3.7E-14 1.3E-18 145.9 -0.8 157 565-721 101-282 (372)
145 4gt6_A Cell surface protein; l 99.4 1.4E-10 4.8E-15 121.2 25.8 331 331-719 54-388 (394)
146 4gt6_A Cell surface protein; l 99.4 2.1E-10 7.3E-15 119.8 27.0 335 306-698 53-391 (394)
147 2r9u_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 115.0 12.1 106 567-675 14-119 (174)
148 3un9_A NLR family member X1; l 99.3 8.5E-14 2.9E-18 143.2 0.3 160 564-723 71-253 (372)
149 2ifg_A High affinity nerve gro 99.2 7.6E-11 2.6E-15 121.1 10.4 105 592-699 11-117 (347)
150 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.3E-15 118.8 10.5 105 568-675 11-117 (347)
151 4h09_A Hypothetical leucine ri 99.1 5.5E-08 1.9E-12 101.0 27.1 107 561-670 236-342 (379)
152 4h09_A Hypothetical leucine ri 99.0 7.4E-08 2.5E-12 100.0 25.4 319 359-712 41-359 (379)
153 2ra8_A Uncharacterized protein 98.9 7.3E-10 2.5E-14 112.7 5.9 215 485-720 106-341 (362)
154 2ra8_A Uncharacterized protein 98.9 6.5E-10 2.2E-14 113.1 5.3 160 561-723 135-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 1.2E-08 4.2E-13 93.4 4.3 116 583-698 30-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 2.7E-08 9.1E-13 91.2 2.7 116 559-674 30-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1.5E-07 5E-12 90.5 3.5 64 611-676 168-235 (267)
158 3rw6_A Nuclear RNA export fact 98.3 1.2E-07 4.1E-12 91.0 2.4 97 618-716 148-258 (267)
159 3e4g_A ATP synthase subunit S, 98.3 1.7E-07 5.9E-12 83.0 1.2 84 613-696 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 4.9E-07 1.7E-11 80.2 3.2 84 565-648 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 3.9E-05 1.3E-09 69.4 4.0 115 584-698 36-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 4.4E-05 1.5E-09 69.0 2.8 113 561-673 37-169 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0026 9E-08 53.5 6.7 57 640-698 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0036 1.2E-07 52.7 6.8 56 617-674 12-68 (130)
165 2lz0_A Uncharacterized protein 69.9 4.7 0.00016 31.5 4.1 47 624-671 7-53 (100)
166 2lz0_A Uncharacterized protein 53.9 29 0.00098 26.9 6.0 50 646-696 5-54 (100)
167 2w7z_A EFSQNR, pentapeptide re 24.3 80 0.0027 28.3 4.8 12 687-698 172-183 (214)
168 2xt2_A ALBG, MCBG-like protein 20.8 2.2E+02 0.0075 24.8 7.0 11 615-625 97-107 (200)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-84 Score=744.66 Aligned_cols=686 Identities=30% Similarity=0.470 Sum_probs=544.7
Q ss_pred HHhccCCHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCccceeEeeCCCCcEEEEEcCCCCCccc---cCCCCCCCC
Q 045487 20 VAAAANISRDQDALLSVKAHIINDNPRNILAQNWTSNTSVCSWMGITCDIYGNRVTSLTIPDLGLTGT---IPSYLGNLS 96 (729)
Q Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~---~~~~l~~l~ 96 (729)
.+++++.++|++||++||+++ .||. ++ .+|..+++||+|.||+|+ .+||++|++++.++.|. +++.+.+++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~--~~~~-~l-~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVL--PDKN-LL-PDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTC--SCTT-SS-TTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred CccccCCHHHHHHHHHHHhhC--CCcc-cc-cCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccC
Confidence 345566788999999999999 5777 66 899988999999999999 68999999999999998 888999999
Q ss_pred CCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcc--cccCCCCCCEEEccCCcCCCCCCccc-ccccccccc
Q 045487 97 SLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPE--ELGNLAELEVLVLNNNLLTGTIPASI-FNLSSISTG 173 (729)
Q Consensus 97 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~ll~~ 173 (729)
+|+.++++.+.+. .+|..++++++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .+++++ ++
T Consensus 78 ~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L-~~ 155 (768)
T 3rgz_A 78 GLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL-EV 155 (768)
T ss_dssp TCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC-SE
T ss_pred cccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC-CE
Confidence 9999999998775 4678899999999999999999988998 99999999999999999988888766 677666 88
Q ss_pred ccccccccccCCCcch--hccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEccc
Q 045487 174 LDFSNNSLTGSFPDDM--CEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGF 251 (729)
Q Consensus 174 L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 251 (729)
|++++|.+.+..+..+ +..+++|++|++++|.+++..+. ..+++|++|++++|.+.+.+|. ++++++|++|++++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 232 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCS
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcC
Confidence 8888888887666553 55668888888888888765543 7788888888888888877666 88888888888888
Q ss_pred CcCcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCC
Q 045487 252 NNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGP 331 (729)
Q Consensus 252 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 331 (729)
|.+++.+|..++++++|++|++++|.+.+.+|.. .+++ |++|++++|.+.+.+|..+...+++|++|++++|.+.+.
T Consensus 233 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~-L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTT-CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCC-CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 8888888888888888888888888887777654 4555 888888888888788877776667788888888888877
Q ss_pred CCCCCCCCCCCCEEEccccccccccCcC-ccCCCCCcEEEeeCccccccccccccCCC-CccEEEcccccceeeCCcccc
Q 045487 332 IPNNLWHCKDLSTVSLSFNQFTGRIPRD-LGNSTKLKSLHLGLNNLIGEIPQEIGNLR-NLEILGIDQSNLVGFVPDTIL 409 (729)
Q Consensus 332 ~~~~l~~~~~L~~L~L~~~~l~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~ 409 (729)
.|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+..+..+.
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 7888888888888888888887777655 77788888888888888777787777776 788888888888877777666
Q ss_pred C--CCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCC
Q 045487 410 N--ISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRN 487 (729)
Q Consensus 410 ~--l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 487 (729)
. +++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSN--CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGG--CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hcccCCccEEECCCCccccccCHHHhc--CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 5 677888888888887776655443 778888888888888777888888888888888888888777878888888
Q ss_pred CcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCc
Q 045487 488 LKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINL 567 (729)
Q Consensus 488 L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 567 (729)
|++|++++|++++. ++..+..+++|++|++++|.+.+.+|.++...+ +|+.|++++|.+.+.+|..+..+++|
T Consensus 468 L~~L~L~~N~l~~~------~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 468 LETLILDFNDLTGE------IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp CCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred ceEEEecCCcccCc------CCHHHhcCCCCCEEEccCCccCCcCChHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCC
Confidence 88888888887765 345677778888888888888888888777766 78888888888888888888888888
Q ss_pred cEEEccCCcccccCCccccccccCceEecCCC----------------------cccccCChhccCCCCCCEEECcCCcc
Q 045487 568 TTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNN----------------------KFEGPIPQEFCHFSRLYEVDMNGNKL 625 (729)
Q Consensus 568 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n----------------------~l~~~~~~~~~~l~~L~~L~l~~n~~ 625 (729)
++|++++|++++.+|..+..+..+..+++... .+.+..+..+..++.++.++++.|.+
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 88888888888777777665555444433321 12223333444455556666777777
Q ss_pred ccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccccccccc
Q 045487 626 SGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTI 705 (729)
Q Consensus 626 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l 705 (729)
.|.+|..+..+++|+.|++++|++++.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 77777777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCCCCCeeeccCCccccCCCCC
Q 045487 706 VGLKNLQRLSLKHNKLQGPIPES 728 (729)
Q Consensus 706 ~~l~~L~~l~l~~n~l~~~~p~~ 728 (729)
+.+++|++|++++|+++|.||++
T Consensus 701 ~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 701 SALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGCCCCSEEECCSSEEEEECCSS
T ss_pred hCCCCCCEEECcCCcccccCCCc
Confidence 88888888888888888888764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-70 Score=622.98 Aligned_cols=632 Identities=30% Similarity=0.404 Sum_probs=565.8
Q ss_pred cEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCc--cccCCCCCceeeccCCcCCCcCcccc-cCCCCCCEE
Q 045487 73 RVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPR--EIGNLTKLKELRLRYNKLQGEIPEEL-GNLAELEVL 149 (729)
Q Consensus 73 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~p~~~-~~l~~L~~L 149 (729)
+++.++++.+++. .+|+.++++++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|
T Consensus 78 ~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 78 GLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred cccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 3455555555543 3557899999999999999999998888 89999999999999999998888776 899999999
Q ss_pred EccCCcCCCCCCcc---ccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEecc
Q 045487 150 VLNNNLLTGTIPAS---IFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLS 226 (729)
Q Consensus 150 ~l~~~~~~~~~p~~---l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 226 (729)
++++|.+++..|.. +.+++++ +.|++++|.+.+.++. ..+++|++|++++|.+++.+|. ++++++|++|+++
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGEL-KHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTC-CEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECC
T ss_pred ECCCCccCCcCChhhhhhccCCCC-CEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECc
Confidence 99999999777766 6777777 9999999999987765 5569999999999999988887 9999999999999
Q ss_pred ccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCccccc
Q 045487 227 FNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGS 306 (729)
Q Consensus 227 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 306 (729)
+|.+.+.+|..++++++|++|++++|.+.+.+|.. .+++|++|++++|.+.+.+|..+......|++|++++|.+.+.
T Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 99999999999999999999999999999888765 8999999999999999999998887633499999999999987
Q ss_pred CCchhhccCCCCcEEEccccccCCCCCCC-CCCCCCCCEEEccccccccccCcCccCCC-CCcEEEeeCccccccccccc
Q 045487 307 FPDDTCHGLPRLKGLYMSYNQFKGPIPNN-LWHCKDLSTVSLSFNQFTGRIPRDLGNST-KLKSLHLGLNNLIGEIPQEI 384 (729)
Q Consensus 307 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~L~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~ 384 (729)
+|..+ ..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+
T Consensus 310 ~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 310 VPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred cchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 77765 45778999999999998777765 89999999999999999999999998887 99999999999999888888
Q ss_pred cC--CCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCC
Q 045487 385 GN--LRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNAS 462 (729)
Q Consensus 385 ~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 462 (729)
.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+..++
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS--LSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc--CCCCCEEECCCCcccCcCCHHHcCCC
Confidence 77 889999999999999999999999999999999999999888766544 89999999999999999999999999
Q ss_pred CCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccc
Q 045487 463 KLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVS 542 (729)
Q Consensus 463 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 542 (729)
+|+.|++++|.+.+..|..+..+++|++|++++|++++. ++..+..+++|++|++++|.+.+.+|..+..++ +
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~ 539 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE------IPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-S 539 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-T
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc------CChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-C
Confidence 999999999999999999999999999999999999876 457788899999999999999999999999887 9
Q ss_pred cceEecccCcccccCCccccCCCCccEEEccCC----------------------cccccCCccccccccCceEecCCCc
Q 045487 543 VEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDN----------------------NLSGSLPMTLGRLKKLQGLYLQNNK 600 (729)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~----------------------~~~~~~~~~l~~l~~L~~L~l~~n~ 600 (729)
|+.|++++|.+.+.+|..+.....+..+++..+ .+.+..+..+..++.++.++++.+.
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 619 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence 999999999999999988877666555443331 1334455566777888889999999
Q ss_pred ccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCcc
Q 045487 601 FEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLE 680 (729)
Q Consensus 601 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 680 (729)
+.+.+|..++.+++|+.|++++|+++|.+|..+.++++|+.|++++|.+++.+|..++.+++|+.|||++|+++|.+|..
T Consensus 620 ~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred ecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCc-ccc
Q 045487 681 IGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNK-LQG 723 (729)
Q Consensus 681 l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~-l~~ 723 (729)
+.++++|++|++++|+++|.+|.. ..+.++....+.||+ +.|
T Consensus 700 l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred HhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 999999999999999999999976 556677778888886 444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-58 Score=523.52 Aligned_cols=583 Identities=23% Similarity=0.234 Sum_probs=366.0
Q ss_pred EcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCC
Q 045487 78 TIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLT 157 (729)
Q Consensus 78 ~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 157 (729)
+.++.++. .+|..+. +++++|+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.++
T Consensus 10 ~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp ECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred ECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence 33444443 4565554 68999999999999888888999999999999999999888889999999999999999888
Q ss_pred CCCCc-cccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCc
Q 045487 158 GTIPA-SIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPR 236 (729)
Q Consensus 158 ~~~p~-~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 236 (729)
.+|. .++++ ++|++|++++|.+++..|..++++++|++|++++|.+.+..+.
T Consensus 87 -~l~~~~~~~l--------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 87 -QLSDKTFAFC--------------------------TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp -CCCTTTTTTC--------------------------TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred -ccChhhhccC--------------------------CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence 4443 35544 7777788887777766666777788888888888877777777
Q ss_pred cccCCCCCCEEEcccCcCcccCChhhh--CCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhc-
Q 045487 237 DLGNLTRLKSLYLGFNNLIGEIPEELG--NLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCH- 313 (729)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~- 313 (729)
.++++++|++|++++|.+++..+..+. .+++|++|++++|.+.+..|..+..+.. |+.+++.++.+.+........
T Consensus 140 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~~~ 218 (680)
T 1ziw_A 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLE 218 (680)
T ss_dssp SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSE-ECEEECTTCCCHHHHHHHHHHH
T ss_pred hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhh-hhhhhccccccChhhHHHHHHH
Confidence 777788888888888877766665543 4577888888888777666666666666 777777777655322222111
Q ss_pred -cCCCCcEEEccccccCCCCCCCCCCCCC--CCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCc
Q 045487 314 -GLPRLKGLYMSYNQFKGPIPNNLWHCKD--LSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNL 390 (729)
Q Consensus 314 -~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 390 (729)
..++|+.|++++|.+.+..+.++..++. |++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 219 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298 (680)
T ss_dssp HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred hhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence 1256888888888887777777776644 8888888888887777778888888888888888887777788888888
Q ss_pred cEEEccccccee-----eCC----ccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCccc--CCcchh
Q 045487 391 EILGIDQSNLVG-----FVP----DTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGS--IPSFCF 459 (729)
Q Consensus 391 ~~L~l~~~~~~~-----~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~ 459 (729)
++|+++++...+ .+| ..+..+++|++|++++|.+.+..+.. +.++++|++|++++|.+... ....+.
T Consensus 299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~~~~~~l~~~~f~ 376 (680)
T 1ziw_A 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM--FTGLINLKYLSLSNSFTSLRTLTNETFV 376 (680)
T ss_dssp CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT--TTTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH--hccccCCcEEECCCCchhhhhcchhhhc
Confidence 888887654332 111 24556666666666666665543332 23366666666666653321 111111
Q ss_pred --cCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchh
Q 045487 460 --NASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIG 537 (729)
Q Consensus 460 --~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 537 (729)
..++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+... ...+..+++|+++++++|.+.
T Consensus 377 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~~l~~L~~L~Ls~n~l~-------- 443 (680)
T 1ziw_A 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT-----GQEWRGLENIFEIYLSYNKYL-------- 443 (680)
T ss_dssp GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC-----SGGGTTCTTCCEEECCSCSEE--------
T ss_pred ccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC-----cccccCcccccEEecCCCCcc--------
Confidence 12355666666666555555555555555555555555443100 023444455555555555544
Q ss_pred cCccccceEecccCcccccCCccccCCCCccEEEccCCccc--ccCCccccccccCceEecCCCcccccCChhccCCCCC
Q 045487 538 NHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLS--GSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRL 615 (729)
Q Consensus 538 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 615 (729)
+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..+..+..+++|
T Consensus 444 -----------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 444 -----------------QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp -----------------ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred -----------------eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc
Confidence 444444445555555555555543 2344455555555555555555554444445555555
Q ss_pred CEEECcCCccccccC--------hhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCC
Q 045487 616 YEVDMNGNKLSGSIP--------SCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAV 687 (729)
Q Consensus 616 ~~L~l~~n~~~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 687 (729)
++|++++|++++..+ ..+..+++|++|++++|.++...+..|..+++|++|++++|++++..+..+..+++|
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence 555555555543211 124455555555555555554433445555555555555555554444444555555
Q ss_pred CEEeCCCCccccccccccc-cCCCCCeeeccCCcccc
Q 045487 688 VNIDLSWNRLSGNIPSTIV-GLKNLQRLSLKHNKLQG 723 (729)
Q Consensus 688 ~~L~ls~n~~~~~~p~~l~-~l~~L~~l~l~~n~l~~ 723 (729)
+.|++++|++++..|..+. .+++|+++++++|++.+
T Consensus 587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 5555555555555444444 45555555555555544
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.5e-57 Score=511.00 Aligned_cols=571 Identities=21% Similarity=0.205 Sum_probs=438.7
Q ss_pred CCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEE
Q 045487 71 GNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLV 150 (729)
Q Consensus 71 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 150 (729)
..++++|+++++.+.+..+..+.++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..|+++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35899999999999877666899999999999999999999999999999999999999999955555799999999999
Q ss_pred ccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEecccccc
Q 045487 151 LNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQF 230 (729)
Q Consensus 151 l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 230 (729)
+++|.+.+..|..++++ ++|++|++++|.+++..|..+.++++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l--------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQ--------------------------KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CCSSCCCCCCSCTTTTC--------------------------TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCCccCccChhHcccc--------------------------CCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 99999884444555555 8899999999999888888889999999999999998
Q ss_pred CCCCCcccc--CCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhhh---hhccccceEEcccCcccc
Q 045487 231 TGRLPRDLG--NLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIF---NLSSMLTALDFTNNSLTG 305 (729)
Q Consensus 231 ~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~ 305 (729)
++..+..++ .+++|++|++++|.+.+..+..+..+++|+.+++.++.+.+.....+. .... |++|++++|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~-L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLST 236 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSC-CCEEECTTSCCCE
T ss_pred cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcc-ccEEEccCCcccc
Confidence 877666654 558899999999999988888899999999999998877643322221 1234 9999999999986
Q ss_pred cCCchhhccC-CCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccc-----c
Q 045487 306 SFPDDTCHGL-PRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIG-----E 379 (729)
Q Consensus 306 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-----~ 379 (729)
..|..+.... ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+ .
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 6665543321 359999999999998888899999999999999999998888899999999999999875443 2
Q ss_pred ccc----cccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCcccc--CCCCCCcEEECCCCcCccc
Q 045487 380 IPQ----EIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNL--IGLPNLELLNLGLNNFSGS 453 (729)
Q Consensus 380 ~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~ 453 (729)
+|. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.........+ ...++|+.|++++|++.+.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 332 6788999999999999999988888999999999999999754322111111 1236899999999999998
Q ss_pred CCcchhcCCCCcEEEccCCcceeccC-ccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCccc--c
Q 045487 454 IPSFCFNASKLYALELGYNSFSGLIP-EALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLD--G 530 (729)
Q Consensus 454 ~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~ 530 (729)
.+..+..+++|+.|++++|.+.+..+ ..+..+++|+++++++|++..... ..+..+++|+.+++++|.+. +
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR------NSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT------TTTTTCTTCCEEECTTSCCBCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh------hhhhcCcccccchhccccccccc
Confidence 88899999999999999999987665 789999999999999999877633 56778899999999998775 3
Q ss_pred cCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCC--------ccccccccCceEecCCCccc
Q 045487 531 VLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLP--------MTLGRLKKLQGLYLQNNKFE 602 (729)
Q Consensus 531 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------~~l~~l~~L~~L~l~~n~l~ 602 (729)
..|..+..+. +|+.|++++|.+.+..+..+..+++|++|++++|++++..+ ..+.++++|++|++++|+++
T Consensus 471 ~~p~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 471 SSPSPFQPLR-NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp CSSCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred cCCcccccCC-CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 4555555444 66666666666665555556666666666666666553211 12455566666666666665
Q ss_pred ccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhh-ccCCCCEEeCCCCcCcc
Q 045487 603 GPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFW-NLEDILSFDFSSNSLNG 675 (729)
Q Consensus 603 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 675 (729)
...+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+. .+++|+.|++++|++..
T Consensus 550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 33333455666666666666666654445555666666666666666665555555 45666666666666553
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-52 Score=468.13 Aligned_cols=531 Identities=22% Similarity=0.219 Sum_probs=328.7
Q ss_pred EEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcC
Q 045487 77 LTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLL 156 (729)
Q Consensus 77 l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 156 (729)
++.++.++. .+|..+.. ++++|++++|.+++..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+
T Consensus 17 ~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 333444443 45554543 789999999999988888999999999999999999888888899999999999999998
Q ss_pred CCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCc
Q 045487 157 TGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPR 236 (729)
Q Consensus 157 ~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 236 (729)
++..|..++++ ++|++|++++|.+++..+..++.+++|++|++++|.+.+..+.
T Consensus 94 ~~~~~~~~~~l--------------------------~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (606)
T 3t6q_A 94 IFMAETALSGP--------------------------KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147 (606)
T ss_dssp SEECTTTTSSC--------------------------TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cccChhhhccc--------------------------ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc
Confidence 86667666666 6666666666666655455666677777777777766653333
Q ss_pred cccCCCCCCEEEcccCcCcccCChhhhCCCCCc--EEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhcc
Q 045487 237 DLGNLTRLKSLYLGFNNLIGEIPEELGNLAELE--MLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHG 314 (729)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 314 (729)
.+..+++|++|++++|.+.+..+..++.+++|+ +|++++|.+.+..|. .+.... |++|++++|... +. .+..
T Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~~~~~-L~~L~l~~~~~~---~~-~~~~ 221 (606)
T 3t6q_A 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG-AFDSAV-FQSLNFGGTQNL---LV-IFKG 221 (606)
T ss_dssp TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT-TTTTCE-EEEEECTTCSCH---HH-HHHH
T ss_pred cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChh-Hhhhcc-ccccccCCchhH---HH-Hhhh
Confidence 344467777777777777666666667777776 666677766644333 333344 677777666411 11 1111
Q ss_pred CCCC--cEEEccccc---cCCCCCCCCCCCC--CCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCC
Q 045487 315 LPRL--KGLYMSYNQ---FKGPIPNNLWHCK--DLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNL 387 (729)
Q Consensus 315 ~~~L--~~L~l~~~~---~~~~~~~~l~~~~--~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 387 (729)
+..+ +.+.+.... .....+..+..+. +|+.+++++|.+++..+..|..+++|++|++++|.+. .+|..+..+
T Consensus 222 l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l 300 (606)
T 3t6q_A 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300 (606)
T ss_dssp TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSC
T ss_pred ccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccc
Confidence 2222 222222111 0001111122221 5677777777776666666777777777777777666 566667777
Q ss_pred CCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccC--CcchhcCCCCc
Q 045487 388 RNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSI--PSFCFNASKLY 465 (729)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~ 465 (729)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++.. .+..+++|++|++++|.+.+.. +..+..+++|+
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG-CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh-hhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence 77777777777777666666777777777777777665444432 1333666666666666665443 44455556666
Q ss_pred EEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccce
Q 045487 466 ALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEE 545 (729)
Q Consensus 466 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 545 (729)
.|++++|.+.+..+..+..+++|+.|++++|++...... ..+..++ +|+.
T Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~-------------------------~L~~ 429 (606)
T 3t6q_A 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ-----SPFQNLH-------------------------LLKV 429 (606)
T ss_dssp EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC-----CTTTTCT-------------------------TCCE
T ss_pred EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc-----hhhhCcc-------------------------cCCE
Confidence 666666665555554444444555544444444332100 1122333 3444
Q ss_pred EecccCcccccCCccccCCCCccEEEccCCccccc---CCccccccccCceEecCCCcccccCChhccCCCCCCEEECcC
Q 045487 546 IYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGS---LPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNG 622 (729)
Q Consensus 546 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 622 (729)
|++++|.+.+..|..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 44444444444444555666677777777766542 224466666777777777776666666666667777777777
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcc
Q 045487 623 NKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNG 675 (729)
Q Consensus 623 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 675 (729)
|++++..|..+..+++| +|++++|.+++..|..+..+++|+.|++++|++..
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 77766666666666767 77777777776666666666677777777776654
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.5e-52 Score=467.50 Aligned_cols=535 Identities=19% Similarity=0.196 Sum_probs=341.0
Q ss_pred EEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCc
Q 045487 76 SLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNL 155 (729)
Q Consensus 76 ~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 155 (729)
.++.++.+++ .+|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 3455555554 4565444 689999999999998888899999999999999999997778889999999999999999
Q ss_pred CCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCC-CC
Q 045487 156 LTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTG-RL 234 (729)
Q Consensus 156 ~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~ 234 (729)
+++..|..++++ ++|++|++++|.+++..+..++++++|++|++++|.+.+ .+
T Consensus 92 l~~~~p~~~~~l--------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l 145 (606)
T 3vq2_A 92 IQSFSPGSFSGL--------------------------TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145 (606)
T ss_dssp CCCCCTTSSTTC--------------------------TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCC
T ss_pred ccccChhhcCCc--------------------------ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceec
Confidence 886667777666 778888888888776666778888888888888888775 45
Q ss_pred CccccCCCCCCEEEcccCcCcccCChhhhCCCCCc----EEEeecCcCccccChhhhhhccccceEEcccCcccccCCch
Q 045487 235 PRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELE----MLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDD 310 (729)
Q Consensus 235 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 310 (729)
|..++++++|++|++++|.+++..+..++.+++|+ +|++++|.+. .++...+...+ |++|++++|.+.+.....
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~~-L~~L~L~~n~~~~~~~~~ 223 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK-LHELTLRGNFNSSNIMKT 223 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTCE-EEEEEEESCCSCHHHHHH
T ss_pred hHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCce-eeeeeccCCccchhHHHH
Confidence 77788888888888888888877777676665554 6888888777 45545555554 777777777766444444
Q ss_pred hhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEe-eCccccccccccccCCCC
Q 045487 311 TCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHL-GLNNLIGEIPQEIGNLRN 389 (729)
Q Consensus 311 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~~~l~~ 389 (729)
.+..++.++.+++..+.+.+.. .+.. +....+..+..+ .++.+++ ..+.+.+..|. +..+++
T Consensus 224 ~~~~l~~L~~l~l~~~~~~~~~--------~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~ 286 (606)
T 3vq2_A 224 CLQNLAGLHVHRLILGEFKDER--------NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLAN 286 (606)
T ss_dssp HHHTTTTCEEEEEEEECCTTSC--------CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTT
T ss_pred HhccccccccccccccccccCC--------cccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCC
Confidence 4555666666666554433210 0100 000111111111 3445555 34455555554 556666
Q ss_pred ccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEc
Q 045487 390 LEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALEL 469 (729)
Q Consensus 390 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 469 (729)
|+.++++++.+.. ++ .+..+++|++|++++|.+ +.+|.. .+++|++|++++|...+.. .+..+++|+.|++
T Consensus 287 L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~----~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 357 (606)
T 3vq2_A 287 VSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTL----DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL 357 (606)
T ss_dssp CSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCC----CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEEC
T ss_pred CCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccC----CCCccceeeccCCcCccch--hhccCCCCCEEEC
Confidence 6666666666543 22 455566666666666666 344422 3566666666666443322 2334555555555
Q ss_pred cCCcceecc--CccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEe
Q 045487 470 GYNSFSGLI--PEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIY 547 (729)
Q Consensus 470 ~~n~~~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 547 (729)
++|.+.+.. +..+..+++|++|++++|.++..+ ..+..++ +|++|+
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~~~l~-------------------------~L~~L~ 405 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-------ANFMGLE-------------------------ELQHLD 405 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-------CCCTTCT-------------------------TCCEEE
T ss_pred cCCccCCCcchhhhhccCCcccEeECCCCccccch-------hhccCCC-------------------------CCCeeE
Confidence 555554331 333444444444444444333211 1222233 344444
Q ss_pred cccCcccccCC-ccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccc-cCChhccCCCCCCEEECcCCcc
Q 045487 548 MYKCNIHGRIP-KEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEG-PIPQEFCHFSRLYEVDMNGNKL 625 (729)
Q Consensus 548 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~ 625 (729)
+++|.+.+..| ..+..+++|++|++++|++++..|..++++++|++|++++|.+++ ..|..++.+++|++|++++|++
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 44444444333 345666777777777777776666667777777777777777765 3566667777777777777777
Q ss_pred ccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCC-CCCEEeCCCCccccc
Q 045487 626 SGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLK-AVVNIDLSWNRLSGN 700 (729)
Q Consensus 626 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ls~n~~~~~ 700 (729)
++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+..++ +|+.|++++|++...
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 7666666777777777777777777766777777777777777777776 5555566665 477777777777643
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-52 Score=469.49 Aligned_cols=515 Identities=20% Similarity=0.199 Sum_probs=294.3
Q ss_pred CccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEee
Q 045487 195 RLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLT 274 (729)
Q Consensus 195 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 274 (729)
.+++|++++|.+++..|..+.++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..|..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCC--EEEcccccc
Q 045487 275 SNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLS--TVSLSFNQF 352 (729)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~L~~~~l 352 (729)
+|.+.+..+..+..+++ |++|++++|.+.+....... .+++|+.|++++|.+.+..+..+..+++|+ .+++++|.+
T Consensus 114 ~n~i~~l~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKT-LESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TSCCSCGGGSCCTTCTT-CCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccCcccCCcchhccCCc-ccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 44444322333333333 44444444444421111111 144455555555554444444444455555 455555555
Q ss_pred ccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccc-----eeeCCccccCCC--CCcEEECcCccCc
Q 045487 353 TGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNL-----VGFVPDTILNIS--TLKILSLFNNTFS 425 (729)
Q Consensus 353 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----~~~~~~~~~~l~--~L~~L~l~~n~~~ 425 (729)
.+..|..+.. .+|+.|++++|.. .+..+..+..++...+....+ ....+..+..+. +|+.|++++|.+.
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 5444433322 3455555555431 111222222222111111100 001111122211 4555666665555
Q ss_pred ccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchh
Q 045487 426 GNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSEL 505 (729)
Q Consensus 426 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 505 (729)
+..+.. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.....
T Consensus 268 ~~~~~~--~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-- 342 (606)
T 3t6q_A 268 NISSNT--FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-- 342 (606)
T ss_dssp SCCTTT--TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC--
T ss_pred ccCHHH--hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc--
Confidence 333222 223556666666666555 444455556666666666666655555556666666666666665542210
Q ss_pred hhhhhhhccCCCCcEEEccCCcccccC--CcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCc
Q 045487 506 MSFFSALVNCKSLKVIVLSENPLDGVL--PSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPM 583 (729)
Q Consensus 506 ~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 583 (729)
...+..+++|++|++++|.+.+.. +..+...+ +|++|++++|.+.+..|..+..+++|++|++++|++.+..+.
T Consensus 343 ---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 343 ---TGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp ---SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred ---hhhhhccCcCCEEECCCCccccccCcchhcccCC-CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 123555666666666666665443 44444444 677777777777666677777788888888888887766543
Q ss_pred -cccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccc---cChhhcCCCCCCEEECcCCcCccCCChhhhc
Q 045487 584 -TLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGS---IPSCLGDLNSLRILSLSSNELTSIIPSTFWN 659 (729)
Q Consensus 584 -~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 659 (729)
.+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|.+++..|..|..
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 498 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc
Confidence 377788888888888888777777777888888888888887752 2356777888888888888888877888888
Q ss_pred cCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccccCC
Q 045487 660 LEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQGPI 725 (729)
Q Consensus 660 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~~~~ 725 (729)
+++|++|++++|++++..|..+.+++.| .|++++|++++..|..+..+++|+++++++|++.+..
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 8888888888888888888888888888 8888888888777777788888888888888887644
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.8e-53 Score=470.59 Aligned_cols=518 Identities=19% Similarity=0.275 Sum_probs=287.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCcc-------cCCCCCCCCCCcc---ceeEeeCCCCcEEEEEcCCCCCccccCCCCCC
Q 045487 25 NISRDQDALLSVKAHIINDNPRNIL-------AQNWTSNTSVCSW---MGITCDIYGNRVTSLTIPDLGLTGTIPSYLGN 94 (729)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~w~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~ 94 (729)
+...|+.||.++++++. ++.... ..+|+.++++|.| .||+|+.. +||++|+++++++.|.+|+.+++
T Consensus 27 ~~~~d~~aL~~~~~~~~--~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 27 EYIKDYLALKEIWDALN--GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp HHHHHHHHHHHHHHHTT--GGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGG
T ss_pred hHHHHHHHHHHHHHHcC--CCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhc
Confidence 34568999999999984 332211 1489999999999 99999864 89999999999999999999999
Q ss_pred CCCCCEEeCCCccCc------c------cCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCc
Q 045487 95 LSSLQTLVLSHNWFS------G------TIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPA 162 (729)
Q Consensus 95 l~~L~~L~Ls~~~~~------~------~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~ 162 (729)
+++|++|+|++|.+. + .+|... +..|| ++++++.+.+..|..+.
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~--------------------- 159 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS--------------------- 159 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC---------------------
T ss_pred CccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHH---------------------
Confidence 999999999999762 1 112111 23344 44444444444443333
Q ss_pred cccccccccccccccccccccCCCcchhccCCCccEEEe--eecCCcCCCCccccccCCCCeEeccccccCCC-------
Q 045487 163 SIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV--SYNQFKGPIPNNLWHCKGLSSASLSFNQFTGR------- 233 (729)
Q Consensus 163 ~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l--~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~------- 233 (729)
.+..-+..+++....+.. .....++.+.+ ..|.+++ +|..++++++|++|++++|.+++.
T Consensus 160 ---~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 160 ---DLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228 (636)
T ss_dssp ---HHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred ---HHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc
Confidence 211111111111111000 00011222212 1344555 566666666666666666666653
Q ss_pred ----------CCcccc--CCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCc-Ccc-ccChhhhhhccccceEEcc
Q 045487 234 ----------LPRDLG--NLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNL-LTG-AIPASIFNLSSMLTALDFT 299 (729)
Q Consensus 234 ----------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~~~~L~~L~l~ 299 (729)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+..
T Consensus 229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~-------- 300 (636)
T 4eco_A 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD-------- 300 (636)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHH--------
T ss_pred ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhc--------
Confidence 666666 67777777777776666666667777777777777766 665 56655554311
Q ss_pred cCcccccCCchhhccCCCCcEEEccccccCCCCCC--CCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCcccc
Q 045487 300 NNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPN--NLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLI 377 (729)
Q Consensus 300 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 377 (729)
+..+++|++|++++|.+. .+|. .+..+++|++|++++|.++|.+| .+..+++|++|++++|
T Consensus 301 ------------~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N--- 363 (636)
T 4eco_A 301 ------------APVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN--- 363 (636)
T ss_dssp ------------SGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS---
T ss_pred ------------cccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC---
Confidence 001233555555555544 3444 44555555555555555554444 4444444445544444
Q ss_pred ccccccccCCCCccEEEcccccceeeCCccccCCCC-CcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCc
Q 045487 378 GEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNIST-LKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPS 456 (729)
Q Consensus 378 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 456 (729)
.+. .+|..+..+++ |+.|++++|.+. .+|.......+++|++|++++|.+.+..|.
T Consensus 364 ---------------------~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 364 ---------------------QIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp ---------------------EEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred ---------------------ccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 444 33444455555 555555555554 444433332234566666666665554444
Q ss_pred chh-------cCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCccc
Q 045487 457 FCF-------NASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLD 529 (729)
Q Consensus 457 ~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 529 (729)
.+. .+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~------------------------------~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPK------------------------------ELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCT------------------------------HHHHTTCCCSEEECCSSCCS
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCH------------------------------HHHccCCCCCEEECCCCCCC
Confidence 333 23334444444443332111 12233445555555555444
Q ss_pred ccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCcccc--ccccCceEecCCCcccccCCh
Q 045487 530 GVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLG--RLKKLQGLYLQNNKFEGPIPQ 607 (729)
Q Consensus 530 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~ 607 (729)
.+|...... .+..+..+++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|.
T Consensus 471 -~i~~~~~~~-----------------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~ 530 (636)
T 4eco_A 471 -EIPKNSLKD-----------------ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530 (636)
T ss_dssp -BCCSSSSEE-----------------TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred -CcCHHHhcc-----------------ccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cCh
Confidence 222221110 0011223446666666666666 4555554 56666666666666664 555
Q ss_pred hccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCC
Q 045487 608 EFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAV 687 (729)
Q Consensus 608 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 687 (729)
.+..+++|++|++++|+ ++++|.+.+.+|..+..+++|++|++++|++ +.+|..+. ++|
T Consensus 531 ~~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L 589 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNI 589 (636)
T ss_dssp GGGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTC
T ss_pred hhhcCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcC
Confidence 66666666666665443 3355666666777777777777777777777 46666554 677
Q ss_pred CEEeCCCCcccc
Q 045487 688 VNIDLSWNRLSG 699 (729)
Q Consensus 688 ~~L~ls~n~~~~ 699 (729)
+.|++++|++..
T Consensus 590 ~~L~Ls~N~l~~ 601 (636)
T 4eco_A 590 SVLDIKDNPNIS 601 (636)
T ss_dssp CEEECCSCTTCE
T ss_pred CEEECcCCCCcc
Confidence 777777776553
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.1e-50 Score=447.64 Aligned_cols=519 Identities=22% Similarity=0.208 Sum_probs=351.3
Q ss_pred CCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEE
Q 045487 71 GNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLV 150 (729)
Q Consensus 71 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 150 (729)
..+++.|+++++.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 45799999999999988777999999999999999999988899999999999999999999988899999999999999
Q ss_pred ccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcC-CCCccccccCCCCeEeccccc
Q 045487 151 LNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKG-PIPNNLWHCKGLSSASLSFNQ 229 (729)
Q Consensus 151 l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~ 229 (729)
+++|.+++..|..++++ ++|++|++++|.+.+ .+|..++++++|++|++++|.
T Consensus 111 L~~n~l~~~~~~~~~~l--------------------------~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 111 AVETKLASLESFPIGQL--------------------------ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CTTSCCCCSSSSCCTTC--------------------------TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ccCCccccccccccCCC--------------------------CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 99999985554666666 677777777777764 457777777777777777777
Q ss_pred cCCCCCccccCCCCCC----EEEcccCcCcccCChhhhCCCCCcEEEeecCcCc-cccChhhhhhccccceEEcccCccc
Q 045487 230 FTGRLPRDLGNLTRLK----SLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLT-GAIPASIFNLSSMLTALDFTNNSLT 304 (729)
Q Consensus 230 ~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~ 304 (729)
+.+..+..++.+++|+ +|++++|.+.+..+..+... +|++|++++|.+. +..|..+..+.. ++.+++..+.+.
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~-L~~l~l~~~~~~ 242 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAG-LHVHRLILGEFK 242 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTT-CEEEEEEEECCT
T ss_pred ceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccc-cccccccccccc
Confidence 7766666666555444 67777777776555544444 7777777777765 344555555555 666666544333
Q ss_pred ccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEc-cccccccccCcCccCCCCCcEEEeeCcccccccccc
Q 045487 305 GSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSL-SFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQE 383 (729)
Q Consensus 305 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L-~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 383 (729)
+... +..+ .. .....+..+ .++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .
T Consensus 243 ~~~~---------l~~~--~~-----~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~ 302 (606)
T 3vq2_A 243 DERN---------LEIF--EP-----SIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-D 302 (606)
T ss_dssp TSCC---------CSCC--CG-----GGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-C
T ss_pred cCCc---------cccc--Ch-----HHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-h
Confidence 1100 0000 00 000111111 2344444 34444444444 555666666666666554 334 5
Q ss_pred ccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCccc--CCcchhcC
Q 045487 384 IGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGS--IPSFCFNA 461 (729)
Q Consensus 384 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~ 461 (729)
+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|.+.+. .+..+..+
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch----hhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 55666666666666666 4444 33 6666666666666444332 233477777777777777654 36777788
Q ss_pred CCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCcc
Q 045487 462 SKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSV 541 (729)
Q Consensus 462 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 541 (729)
++|+.|++++|.+.+ .|..+..+++|+.|++++|++..... ...+..+++|++|++++|.+.+..
T Consensus 376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~--------- 440 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE-----FSAFLSLEKLLYLDISYTNTKIDF--------- 440 (606)
T ss_dssp SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT-----TTTTTTCTTCCEEECTTSCCEECC---------
T ss_pred CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC-----hhhhhccccCCEEECcCCCCCccc---------
Confidence 888888888888775 44678888899999998888776521 034566677777777766655443
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCccccc-CCccccccccCceEecCCCcccccCChhccCCCCCCEEEC
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGS-LPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDM 620 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 620 (729)
|..+..+++|++|++++|++++. +|..++.+++|++|++++|++++..|..+..+++|++|++
T Consensus 441 ----------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 441 ----------------DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp ----------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ----------------hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 44455566677777777776652 5666666777777777777777666666677777777777
Q ss_pred cCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccC-CCCEEeCCCCcCccc
Q 045487 621 NGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLE-DILSFDFSSNSLNGS 676 (729)
Q Consensus 621 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~ 676 (729)
++|++++..|..+..+++|++|++++|+++. +|..+..++ +|+.|++++|++...
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccC
Confidence 7777776666777777777777777777663 455566665 477777777776643
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-48 Score=451.41 Aligned_cols=518 Identities=22% Similarity=0.232 Sum_probs=303.7
Q ss_pred CCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcC-cccccCCCCCCEEEccCCcCCCCCCcccccccccccc
Q 045487 95 LSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEI-PEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTG 173 (729)
Q Consensus 95 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~ 173 (729)
.+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |..|+++++|++|+|++|.+.+..|..+.++.++ +.
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL-FE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC-CC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc-CE
Confidence 356777777777777777777777777777777777554444 6667777777777777777775566666666555 55
Q ss_pred ccccccccccCCCc-chhccCCCccEEEeeecCCcCCCC-ccccccCCCCeEeccccccCCCCCccccCC--CCCCEEEc
Q 045487 174 LDFSNNSLTGSFPD-DMCEGLPRLKGLYVSYNQFKGPIP-NNLWHCKGLSSASLSFNQFTGRLPRDLGNL--TRLKSLYL 249 (729)
Q Consensus 174 L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l 249 (729)
|++++|.+.+.++. ..+..+++|++|++++|.+++..+ ..++++++|++|++++|.+.+..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 55555555544333 234455777777777777765544 457777777777777777777667777666 67777777
Q ss_pred ccCcCcccCChhhhCCCC------CcEEEeecCcCccccChhhhhhc--cccceEEcccCcccccCCchhhccCCCCcEE
Q 045487 250 GFNNLIGEIPEELGNLAE------LEMLVLTSNLLTGAIPASIFNLS--SMLTALDFTNNSLTGSFPDDTCHGLPRLKGL 321 (729)
Q Consensus 250 ~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 321 (729)
++|.+.+..+..++.+++ |++|++++|.+.+..+..+.... ..++.+.+..+.....
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~--------------- 246 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG--------------- 246 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------
Confidence 777777666665555544 67777777766655555444321 1255555543222100
Q ss_pred EccccccCCCCCCCCCC--CCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEccccc
Q 045487 322 YMSYNQFKGPIPNNLWH--CKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSN 399 (729)
Q Consensus 322 ~l~~~~~~~~~~~~l~~--~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 399 (729)
...+.+.+.....+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 247 -~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 247 -FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp -SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred -ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 0011111112222222 2566666666666666666666666666666666666666666666666666666666666
Q ss_pred ceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccC
Q 045487 400 LVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIP 479 (729)
Q Consensus 400 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 479 (729)
+.+..+..+..+++|+.|++++|.+.+..+. .+.++++|++|++++|.+++. ..+++|+.+++++|.+... |
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~ 397 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ--TFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-P 397 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCCCCSS--CSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-C
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCccChh--hhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-c
Confidence 6666666666666666666666666533322 233366666666666666532 1255666666666666522 2
Q ss_pred ccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCc
Q 045487 480 EALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPK 559 (729)
Q Consensus 480 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 559 (729)
. ...+++.+++++|++..... ...+..+++|++|++++|.+.+..+...
T Consensus 398 ~---~~~~l~~L~ls~N~l~~l~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------- 446 (844)
T 3j0a_A 398 K---INLTANLIHLSENRLENLDI-----LYFLLRVPHLQILILNQNRFSSCSGDQT----------------------- 446 (844)
T ss_dssp C---CCTTCCEEECCSCCCCSSTT-----HHHHTTCTTCCEEEEESCCCCCCCSSSS-----------------------
T ss_pred c---cccccceeecccCccccCch-----hhhhhcCCccceeeCCCCcccccccccc-----------------------
Confidence 2 14556667777776665422 1234456667777777776654322211
Q ss_pred cccCCCCccEEEccCCccc-----ccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhc
Q 045487 560 EIGSLINLTTLGLGDNNLS-----GSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLG 634 (729)
Q Consensus 560 ~~~~l~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 634 (729)
+..+++|+.|++++|.+. +..+..+.++++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+.
T Consensus 447 -~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 447 -PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp -SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred -cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 222345555555555544 12233445555555666666655555555555555566666666655544444443
Q ss_pred CCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCc
Q 045487 635 DLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 635 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 674 (729)
++|+.|++++|.+++..|..|. +|+.|++++|++.
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFI 560 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCC
T ss_pred --ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcc
Confidence 5566666666666555554432 4555566655554
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.8e-49 Score=453.12 Aligned_cols=530 Identities=22% Similarity=0.239 Sum_probs=331.8
Q ss_pred EeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCC-Ccccccccccccccccccc
Q 045487 101 LVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTI-PASIFNLSSISTGLDFSNN 179 (729)
Q Consensus 101 L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~ll~~L~l~~~ 179 (729)
.+.++++++ .+|. -.++|++|+|++|.+++..|..|+++++|++|++++|...+.+ |..+.++
T Consensus 9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L------------ 72 (844)
T 3j0a_A 9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL------------ 72 (844)
T ss_dssp EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC------------
T ss_pred EEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCC------------
Confidence 344445554 3454 3478999999999999888899999999999999998655444 4444444
Q ss_pred ccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCcc--ccCCCCCCEEEcccCcCccc
Q 045487 180 SLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRD--LGNLTRLKSLYLGFNNLIGE 257 (729)
Q Consensus 180 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~ 257 (729)
++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+.. ++++++|++|++++|.+.+.
T Consensus 73 --------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 73 --------------PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp --------------TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred --------------CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 89999999999999888999999999999999999998766655 88999999999999999876
Q ss_pred CC-hhhhCCCCCcEEEeecCcCccccChhhhhh--ccccceEEcccCcccccCCchhhccC-----CCCcEEEccccccC
Q 045487 258 IP-EELGNLAELEMLVLTSNLLTGAIPASIFNL--SSMLTALDFTNNSLTGSFPDDTCHGL-----PRLKGLYMSYNQFK 329 (729)
Q Consensus 258 ~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~-----~~L~~L~l~~~~~~ 329 (729)
.+ ..++++++|++|++++|.+.+..+..+..+ .. |+.|++++|.+.+..+..+.... ..|+.|++++|.+.
T Consensus 139 ~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS-SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc-cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 55 578999999999999999988788777766 55 89999999888866655432211 13677777777666
Q ss_pred CCCCCCCCC---CCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCC--CCccEEEcccccceeeC
Q 045487 330 GPIPNNLWH---CKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNL--RNLEILGIDQSNLVGFV 404 (729)
Q Consensus 330 ~~~~~~l~~---~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~ 404 (729)
+..+..+.. ...++.+.+..+...... ..+.+.+.....+..+ ++|+.|++++|.+.+..
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~---------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAGF---------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCSS---------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred hhHHHHHHhhcCcccccceecccccccccc---------------cccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 555554432 245556665533221100 0111111112222222 44555555555555555
Q ss_pred CccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccc
Q 045487 405 PDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGN 484 (729)
Q Consensus 405 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 484 (729)
+..+..+++|+.|++++|.+.+..+.. +.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 360 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEA--FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTT--TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHH--hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence 555555555555555555554443322 223555555555555555554555555566666666666655555555666
Q ss_pred cCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCccccc-CCccccC
Q 045487 485 LRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGR-IPKEIGS 563 (729)
Q Consensus 485 l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~ 563 (729)
+++|+.|++++|.++.. ..+++|+.+++++|++. .+|.. ..+++.|++++|.+.+. .+..+..
T Consensus 361 l~~L~~L~Ls~N~l~~i-----------~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~ 424 (844)
T 3j0a_A 361 LEKLQTLDLRDNALTTI-----------HFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLR 424 (844)
T ss_dssp CCCCCEEEEETCCSCCC-----------SSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred CCCCCEEECCCCCCCcc-----------cCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhc
Confidence 66666666666665543 11455666666666654 22221 12455555555555432 1122446
Q ss_pred CCCccEEEccCCcccccCCc-cccccccCceEecCCCccc-----ccCChhccCCCCCCEEECcCCccccccChhhcCCC
Q 045487 564 LINLTTLGLGDNNLSGSLPM-TLGRLKKLQGLYLQNNKFE-----GPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLN 637 (729)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 637 (729)
+++|++|++++|++++..+. .+..+++|+.|++++|.++ +..+..+..+++|++|++++|++++..|..|..++
T Consensus 425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 504 (844)
T 3j0a_A 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504 (844)
T ss_dssp CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence 66777777777776643322 2344666777777777665 22334455566666666666666666666666666
Q ss_pred CCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccc
Q 045487 638 SLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 638 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
+|++|++++|++++..+..+. ++|+.|++++|++++..|..+ ++|+.|++++|++..
T Consensus 505 ~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence 666666666666665555544 566666666666666555443 346666666666553
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9e-49 Score=442.87 Aligned_cols=507 Identities=19% Similarity=0.264 Sum_probs=293.5
Q ss_pred cCCHHHHHHHHHHHhhccCCCCCCcccCCCCCCC-----CC--Ccc------------ceeEeeCCCCcEEEEEcCCCCC
Q 045487 24 ANISRDQDALLSVKAHIINDNPRNILAQNWTSNT-----SV--CSW------------MGITCDIYGNRVTSLTIPDLGL 84 (729)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~ 84 (729)
++..+|+.||++||+++ .+| +|+... ++ |.| .||+|+. .+||++|+|+++++
T Consensus 265 ~~~~~d~~ALl~~k~~l--~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEAL--DGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp CHHHHHHHHHHHHHHHT--TGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred ccchHHHHHHHHHHHHc--CCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 34467899999999999 444 575433 55 999 9999986 68999999999999
Q ss_pred ccccCCCCCCCCCCCEEeC-CCccCcccCCccc-----------------------------------------------
Q 045487 85 TGTIPSYLGNLSSLQTLVL-SHNWFSGTIPREI----------------------------------------------- 116 (729)
Q Consensus 85 ~~~~~~~l~~l~~L~~L~L-s~~~~~~~~~~~l----------------------------------------------- 116 (729)
.|.+|+.++++++|++|+| ++|.+.|..+-..
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 8887665522110
Q ss_pred ----cCCCCCceeeccC--CcCCCcCcccccCCCCCCEEEccCCcCCC-CCCccccccccccccccccccccccCCCcch
Q 045487 117 ----GNLTKLKELRLRY--NKLQGEIPEELGNLAELEVLVLNNNLLTG-TIPASIFNLSSISTGLDFSNNSLTGSFPDDM 189 (729)
Q Consensus 117 ----~~l~~L~~L~L~~--~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~ 189 (729)
.....++.+.+.. |.+++ +|..|+++++|++|+|++|.+++ .+|..+... +.+...+.+|..+
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~---------s~n~~~g~iP~~l 485 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA---------NSDYAKQYENEEL 485 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT---------TSHHHHHHTTSCC
T ss_pred ccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccc---------ccccccccCChhh
Confidence 1112233333333 66665 77778888888888888887775 222211110 1111222233333
Q ss_pred -hccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccc-cCC-CCCccccCCCCCCEEEcccCcCcccCChhhhCCC
Q 045487 190 -CEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQ-FTG-RLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLA 266 (729)
Q Consensus 190 -~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 266 (729)
+..+++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..+++++ ..+..++
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-----------------~~~~~l~ 548 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-----------------DDEDTGP 548 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------HCTTTTT
T ss_pred hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh-----------------hcccccC
Confidence 2233555555555555555555555555555555555554 444 4444443333 0001112
Q ss_pred CCcEEEeecCcCccccCh--hhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCC-CC
Q 045487 267 ELEMLVLTSNLLTGAIPA--SIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKD-LS 343 (729)
Q Consensus 267 ~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~ 343 (729)
+|++|++++|.+. .+|. .+..+++ |+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+
T Consensus 549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~-L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 549 KIQIFYMGYNNLE-EFPASASLQKMVK-LGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622 (876)
T ss_dssp TCCEEECCSSCCC-BCCCHHHHTTCTT-CCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred CccEEEeeCCcCC-ccCChhhhhcCCC-CCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence 4455555554444 4444 4444444 555555555444 444 2334455666666666665 55556666666 77
Q ss_pred EEEccccccccccCcCccCCCC--CcEEEeeCccccccccccc---c--CCCCccEEEcccccceeeCCccccCCCCCcE
Q 045487 344 TVSLSFNQFTGRIPRDLGNSTK--LKSLHLGLNNLIGEIPQEI---G--NLRNLEILGIDQSNLVGFVPDTILNISTLKI 416 (729)
Q Consensus 344 ~L~L~~~~l~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~~~---~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 416 (729)
.|++++|.++ .+|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.+....+..+..+++|+.
T Consensus 623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701 (876)
T ss_dssp EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence 7777777766 55655555433 7777777777665544321 1 2346777777777776432223346677777
Q ss_pred EECcCccCcccCCCcccc------CCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcE
Q 045487 417 LSLFNNTFSGNLPSSKNL------IGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKR 490 (729)
Q Consensus 417 L~l~~n~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 490 (729)
|++++|.+. .+|..... .++++|+.|++++|++. .+|..+. ...+++|+.
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~----------------------~~~l~~L~~ 757 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR----------------------ATTLPYLSN 757 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS----------------------TTTCTTCCE
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhh----------------------hccCCCcCE
Confidence 777777666 34432211 01124555555555444 3333332 014455555
Q ss_pred EeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEE
Q 045487 491 LGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTL 570 (729)
Q Consensus 491 L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 570 (729)
|++++|+++.. +..+..+++|+.|++++|+ ++++|.+.+.+|..+..+++|+.|
T Consensus 758 L~Ls~N~L~~l-------p~~l~~L~~L~~L~Ls~N~-------------------~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 758 MDVSYNCFSSF-------PTQPLNSSQLKAFGIRHQR-------------------DAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp EECCSSCCSSC-------CCGGGGCTTCCEEECCCCB-------------------CTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred EEeCCCCCCcc-------chhhhcCCCCCEEECCCCC-------------------CcccccccccChHHHhcCCCCCEE
Confidence 55555544442 1334455666666666553 334555566667777777788888
Q ss_pred EccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccc
Q 045487 571 GLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLS 626 (729)
Q Consensus 571 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 626 (729)
++++|++ +.+|..+. ++|+.|+|++|++....+..++....+..+.+.+|+..
T Consensus 812 ~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 812 QIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp ECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred ECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 8888887 46666654 57888888888776655555554444445555555443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-46 Score=415.71 Aligned_cols=491 Identities=20% Similarity=0.201 Sum_probs=265.9
Q ss_pred CCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCcccccccccccccc
Q 045487 96 SSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLD 175 (729)
Q Consensus 96 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~ 175 (729)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..+.++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------- 99 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-------- 99 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC--------
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc--------
Confidence 467888888888777777777888888888888888776666777888888888888887764444445544
Q ss_pred ccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCC-CCCccccCCCCCCEEEcccCcC
Q 045487 176 FSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTG-RLPRDLGNLTRLKSLYLGFNNL 254 (729)
Q Consensus 176 l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~ 254 (729)
++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+
T Consensus 100 ------------------~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 100 ------------------SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp ------------------TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred ------------------cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 555566666555554433345566666666666665554 2455566666666666666666
Q ss_pred cccCChhhhCCCCC----cEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCC
Q 045487 255 IGEIPEELGNLAEL----EMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKG 330 (729)
Q Consensus 255 ~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 330 (729)
.+..+..++.+++| +++++++|.+.+..+..+ .... |+.|++++|.............++.++...+....+..
T Consensus 162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~-~~~~-L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCE-EEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred ceecHHHccchhccchhhhhcccCCCCceecCHHHh-ccCc-ceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 55555555555555 556666665553333322 2223 66666655533221112222233334443333222111
Q ss_pred ------CCCCCCCCCC--CCCEEEcccc-ccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccce
Q 045487 331 ------PIPNNLWHCK--DLSTVSLSFN-QFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLV 401 (729)
Q Consensus 331 ------~~~~~l~~~~--~L~~L~L~~~-~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 401 (729)
.....+..+. .++.+++.++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+.
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc
Confidence 0001111111 1233444443 333344444444444555555444443 344444444 4444444444443
Q ss_pred eeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceecc--C
Q 045487 402 GFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLI--P 479 (729)
Q Consensus 402 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~ 479 (729)
. +|. .. +++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+.. +
T Consensus 318 ~-l~~--~~--------------------------l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~ 366 (570)
T 2z63_A 318 Q-FPT--LK--------------------------LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCS 366 (570)
T ss_dssp S-CCB--CB--------------------------CSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEE
T ss_pred c-cCc--cc--------------------------ccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccc
Confidence 1 121 23 44455555555444433322 34455555555555554332 4
Q ss_pred ccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCc
Q 045487 480 EALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPK 559 (729)
Q Consensus 480 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 559 (729)
..+..+++|+.|++++|.+.... ..+..+++|++|++++|.+.+..+. .
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~------------------------~ 415 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMS-------SNFLGLEQLEHLDFQHSNLKQMSEF------------------------S 415 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEE-------EEEETCTTCCEEECTTSEEESCTTS------------------------C
T ss_pred ccccccCccCEEECCCCcccccc-------ccccccCCCCEEEccCCccccccch------------------------h
Confidence 45566666666666666555431 1244455555555555544322211 2
Q ss_pred cccCCCCccEEEccCCcccccCCccccccccCceEecCCCccc-ccCChhccCCCCCCEEECcCCccccccChhhcCCCC
Q 045487 560 EIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFE-GPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNS 638 (729)
Q Consensus 560 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 638 (729)
.+..+++|++|++++|.+.+..|..+.++++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 2445556666666666666555666666666666666666665 345556666666666666666666555666666666
Q ss_pred CCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCC
Q 045487 639 LRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLP 678 (729)
Q Consensus 639 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 678 (729)
|++|++++|.+++..+..|..+++|+.|++++|++++..|
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 6666666666666655566666666666666666655444
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-46 Score=416.71 Aligned_cols=512 Identities=18% Similarity=0.200 Sum_probs=340.5
Q ss_pred ccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCc
Q 045487 174 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNN 253 (729)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 253 (729)
++.++..++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+..+..|+++++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EECCSSCCS-SCCSSSC---SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEeCCCCcc-ccCCCcc---ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 344444443 4554332 467777777777776666677777777777777777766666667777777777777777
Q ss_pred CcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccc-cCCchhhccCCCCcEEEccccccCCCC
Q 045487 254 LIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTG-SFPDDTCHGLPRLKGLYMSYNQFKGPI 332 (729)
Q Consensus 254 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~ 332 (729)
+.+..+..++++++|++|++++|.+.+..+..+..+.+ |++|++++|.+.+ .+|.. +..+++|++|++++|.+.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT-CCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEEC
T ss_pred CCccCHhhhcCccccccccccccccccCCCcccccccc-ccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceec
Confidence 77666666777777777777777666322223444444 6666666655543 23332 223444555555555554444
Q ss_pred CCCCCCCCCC----CEEEccccccccccCcCccCCCCCcEEEeeCcccc-ccccccccCCCCccEEEcccccceeeCCcc
Q 045487 333 PNNLWHCKDL----STVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLI-GEIPQEIGNLRNLEILGIDQSNLVGFVPDT 407 (729)
Q Consensus 333 ~~~l~~~~~L----~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 407 (729)
+..+..+++| +.+++++|.+.+..+..+... +|+.|++++|... ..++..+..++.++...+....+..
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~----- 239 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----- 239 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-----
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC-----
Confidence 4444444444 455555555554444444333 4555555544221 1223333444444443332211100
Q ss_pred ccCCCCCcEEECcCccCcccCCCccccCCCC--CCcEEECCCC-cCcccCCcchhcCCCCcEEEccCCcceeccCccccc
Q 045487 408 ILNISTLKILSLFNNTFSGNLPSSKNLIGLP--NLELLNLGLN-NFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGN 484 (729)
Q Consensus 408 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 484 (729)
...++. +... .+.+++ .++.+++.++ .+.+..+..+..+++|+.+++++|.+. .+|..+..
T Consensus 240 ---~~~l~~--~~~~----------~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~ 303 (570)
T 2z63_A 240 ---EGNLEK--FDKS----------ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN 303 (570)
T ss_dssp ---CSSCEE--CCTT----------TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC
T ss_pred ---chhhhh--cchh----------hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc
Confidence 001100 0000 001111 3455666666 555666777777788888888888776 35666667
Q ss_pred cCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccC--Ccccc
Q 045487 485 LRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRI--PKEIG 562 (729)
Q Consensus 485 l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~ 562 (729)
+ +|+.|++++|.+...+. ..+++|+.+++++|.+.+..+. ... ++|++|++++|.+.+.. +..+.
T Consensus 304 ~-~L~~L~l~~n~~~~l~~---------~~l~~L~~L~l~~n~~~~~~~~--~~~-~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 304 F-GWQHLELVNCKFGQFPT---------LKLKSLKRLTFTSNKGGNAFSE--VDL-PSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp C-CCSEEEEESCBCSSCCB---------CBCSSCCEEEEESCBSCCBCCC--CBC-TTCCEEECCSSCCBEEEEEEHHHH
T ss_pred C-CccEEeeccCcccccCc---------ccccccCEEeCcCCcccccccc--ccC-CCCCEEeCcCCccCcccccccccc
Confidence 7 88888888887775421 3567888888888877665554 223 38888888888876543 56678
Q ss_pred CCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCC-hhccCCCCCCEEECcCCccccccChhhcCCCCCCE
Q 045487 563 SLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIP-QEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRI 641 (729)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 641 (729)
.+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 88899999999998885544 48889999999999999887655 46788899999999999998888888888999999
Q ss_pred EECcCCcCc-cCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCc
Q 045487 642 LSLSSNELT-SIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNK 720 (729)
Q Consensus 642 L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~ 720 (729)
|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..|..+++|++|++++|+
T Consensus 450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999999987 5688888899999999999999998888889999999999999999998888888899999999999999
Q ss_pred cccCCCC
Q 045487 721 LQGPIPE 727 (729)
Q Consensus 721 l~~~~p~ 727 (729)
+.|.+|.
T Consensus 530 ~~~~~~~ 536 (570)
T 2z63_A 530 WDCSCPR 536 (570)
T ss_dssp BCCCTTT
T ss_pred ccCCCcc
Confidence 9988775
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-45 Score=408.08 Aligned_cols=492 Identities=18% Similarity=0.177 Sum_probs=269.1
Q ss_pred CCccceeEeeCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcc
Q 045487 59 VCSWMGITCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPE 138 (729)
Q Consensus 59 ~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~ 138 (729)
.|.|.|+ |+....++ + .+|+.+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|.
T Consensus 3 ~C~~~~~-c~~~~~~l----------~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDGRSRSF----------T-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EECTTSCC----------S-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EECCCCcc----------c-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4899998 87543333 2 4565443 6899999999999988889999999999999999999988888
Q ss_pred cccCCCCCCEEEccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcC-CCCcccccc
Q 045487 139 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKG-PIPNNLWHC 217 (729)
Q Consensus 139 ~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l 217 (729)
.|+++++|++|++++|.+++..|..++++ ++|++|++++|.+++ ..|..++++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--------------------------~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPL--------------------------SSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTC--------------------------TTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hccccccCCEEECCCCccCccCHHHhccC--------------------------CCCcEEECCCCcccccchhhhhhcc
Confidence 89999999999999999885444445555 788888888888775 345677778
Q ss_pred CCCCeEeccccccCCCCC-ccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhhhh-hccccce
Q 045487 218 KGLSSASLSFNQFTGRLP-RDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFN-LSSMLTA 295 (729)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~ 295 (729)
++|++|++++|...+.++ ..++++++|++|++++|.+.+..|..++++++|++|+++.|... .+|..+.. +++ |++
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~-L~~ 200 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSS-VRY 200 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTT-BSE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhccc-ccE
Confidence 888888888877443443 56777788888888888877777777777777777777777664 44443322 222 555
Q ss_pred EEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccC----cCccCCCCCcEEEe
Q 045487 296 LDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIP----RDLGNSTKLKSLHL 371 (729)
Q Consensus 296 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~----~~~~~l~~L~~L~l 371 (729)
|++++|.+.+... ........+++|+.|++++|.+++..+ ..+..+++|+.+++
T Consensus 201 L~L~~n~l~~~~~----------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 201 LELRDTNLARFQF----------------------SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EEEESCBCTTCCC----------------------CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred EEccCCccccccc----------------------cccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 5555554432100 001112235566666666666554322 22344556666666
Q ss_pred eCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccC-----CCccccCCCCCCcEEECC
Q 045487 372 GLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNL-----PSSKNLIGLPNLELLNLG 446 (729)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~~~~L~~L~l~ 446 (729)
++|.+.+.... +. .....+..+++++.|++.++.+.... +... ...++|+.++++
T Consensus 259 ~~~~~~~~~~~-----~~-------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~--~~~~~L~~L~l~ 318 (549)
T 2z81_A 259 DDCTLNGLGDF-----NP-------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY--SLLEKVKRITVE 318 (549)
T ss_dssp ESCEEECCSCC-----CC-------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH--HHSTTCCEEEEE
T ss_pred ccccccccccc-----cc-------------cchhhhhhhcccccccccccccchhhhcccchhhh--hhcccceEEEec
Confidence 66654431100 00 00112334455555655555432110 0000 013455555555
Q ss_pred CCcCcccCCcch-hcCCCCcEEEccCCcceeccC---ccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEE
Q 045487 447 LNNFSGSIPSFC-FNASKLYALELGYNSFSGLIP---EALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIV 522 (729)
Q Consensus 447 ~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 522 (729)
+|.+. .+|..+ ..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|+++.... ....+..+++|++|+
T Consensus 319 ~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK----TGEILLTLKNLTSLD 393 (549)
T ss_dssp SSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH----HHHHGGGCTTCCEEE
T ss_pred cCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc----chhhhhcCCCCCEEE
Confidence 55544 333333 345555555555555544332 123344444444444444433210 001233333344444
Q ss_pred ccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCccc
Q 045487 523 LSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFE 602 (729)
Q Consensus 523 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 602 (729)
+++|.+. .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|+++
T Consensus 394 Ls~N~l~--------------------------~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 394 ISRNTFH--------------------------PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444 (549)
T ss_dssp CTTCCCC--------------------------CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCS
T ss_pred CCCCCCc--------------------------cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChh
Confidence 4333322 12223334444555555555544 222221 134444444444444
Q ss_pred ccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCc
Q 045487 603 GPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 603 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 674 (729)
+.. ..+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++.
T Consensus 445 ~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 445 SFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred hhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 321 23444444444444444 3332 233444444444444444444444444444444444444444
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-44 Score=399.30 Aligned_cols=493 Identities=19% Similarity=0.199 Sum_probs=338.4
Q ss_pred CCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEe
Q 045487 194 PRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVL 273 (729)
Q Consensus 194 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 273 (729)
+...+.+.+++.++ .+|..+. ++|++|++++|.+++..|..++++++|++|++++|.+.+..+..++++++|++|++
T Consensus 5 ~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp CTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 33444566666666 5665554 57788888888777666777777788888888887777777777777777777777
Q ss_pred ecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccc
Q 045487 274 TSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFT 353 (729)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~ 353 (729)
++|.+.+..+..+..+++ |++|++++|.+.+. ..+..+..+++|++|++++|.+.
T Consensus 82 s~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~------------------------~~~~~~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSS-LKYLNLMGNPYQTL------------------------GVTSLFPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp TTSCCCSCCHHHHTTCTT-CCEEECTTCCCSSS------------------------CSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCccCccCHHHhccCCC-CcEEECCCCccccc------------------------chhhhhhccCCccEEECCCCccc
Confidence 777776444444554444 55555555554421 22344555666666666666532
Q ss_pred ccc-CcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCC-Cc
Q 045487 354 GRI-PRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLP-SS 431 (729)
Q Consensus 354 ~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~ 431 (729)
+.+ +..+..+++|++|++++|.+.+..|..+..+++|++|+++.|.........+..+++|+.|++++|.+.+... ..
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 216 (549)
T 2z81_A 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216 (549)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC
T ss_pred cccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccccc
Confidence 233 2456666666666666666666666666666666666666665543222223446666666666666654210 11
Q ss_pred cccCCCCCCcEEECCCCcCcccCC----cchhcCCCCcEEEccCCcceecc------CccccccCCCcEEeccCCcccCC
Q 045487 432 KNLIGLPNLELLNLGLNNFSGSIP----SFCFNASKLYALELGYNSFSGLI------PEALGNLRNLKRLGLRRNYLTSS 501 (729)
Q Consensus 432 ~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~l~~~~l~~~ 501 (729)
.....+++|+.|++++|.+.+..+ ..+..+++|+.+++++|.+.+.. ...+..+++++.+.+.++.+...
T Consensus 217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~ 296 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296 (549)
T ss_dssp SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG
T ss_pred chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchh
Confidence 111235677777777776654322 23345667777777777765432 12345677888888888766543
Q ss_pred cchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCC---ccccCCCCccEEEccCCccc
Q 045487 502 TSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIP---KEIGSLINLTTLGLGDNNLS 578 (729)
Q Consensus 502 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~ 578 (729)
.. ...+.......++|+.+++++|.+. .+|..+....++|++|++++|.+.+.+| ..+..+++|++|++++|+++
T Consensus 297 ~~-~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 374 (549)
T 2z81_A 297 YL-FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374 (549)
T ss_dssp GG-SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred hh-cccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence 10 0001122344578899999998875 5777665433489999999999887664 34678899999999999998
Q ss_pred ccCC--ccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChh
Q 045487 579 GSLP--MTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPST 656 (729)
Q Consensus 579 ~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 656 (729)
+..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+. ++|++|++++|.+++..
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~--- 447 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS--- 447 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC---
T ss_pred ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc---
Confidence 5432 45788999999999999998 67888888999999999999988 4454443 68999999999998753
Q ss_pred hhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccccCCC
Q 045487 657 FWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQGPIP 726 (729)
Q Consensus 657 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 726 (729)
..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|++|++++|++.|..|
T Consensus 448 -~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 -LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 46889999999999998 6775 4678999999999999998888889999999999999999988665
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.6e-43 Score=399.40 Aligned_cols=523 Identities=21% Similarity=0.207 Sum_probs=325.9
Q ss_pred ccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccc
Q 045487 87 TIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFN 166 (729)
Q Consensus 87 ~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 166 (729)
.+|+.+. +++++|+|++|.+++..+.+|+++++|++|+|++|.+++..|.+|+++++|++|+|++|+++ .+|.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~---- 117 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLAL---- 117 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECG----
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCH----
Confidence 4555442 37999999999999888889999999999999999999777778999999999999999988 3332
Q ss_pred cccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCC-CCCccccCCCCCC
Q 045487 167 LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTG-RLPRDLGNLTRLK 245 (729)
Q Consensus 167 l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~ 245 (729)
.++.++++|++|++++|.+++..+..++++++|++|++++|.+.+ ..|..++.+++|+
T Consensus 118 ---------------------~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 118 ---------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp ---------------------GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred ---------------------HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 223333888888888888886666678888888888888888765 4567778888888
Q ss_pred EEEcccCcCcccCChhhhCCCCCc----EEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEE
Q 045487 246 SLYLGFNNLIGEIPEELGNLAELE----MLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGL 321 (729)
Q Consensus 246 ~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 321 (729)
+|++++|.+.+..+..+..+.+++ .++++.|.+. .++........ ++.+++.+|.....++...+..+..++..
T Consensus 177 ~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~~~~-~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTCE-EEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred hhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCcccccchh-hhhhhhhcccccccccchhhcCCcccccc
Confidence 888888888877777766554443 5677777776 44444444444 67777777755544444444555555555
Q ss_pred EccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCcccc---ccccccccCCCCccEEEcccc
Q 045487 322 YMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLI---GEIPQEIGNLRNLEILGIDQS 398 (729)
Q Consensus 322 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~ 398 (729)
.+..+...... .+.......+.....+....+..+... ...+..+..+.+++.+.+..+
T Consensus 255 ~l~~~~~~~~~------------------~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (635)
T 4g8a_A 255 RLVLGEFRNEG------------------NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316 (635)
T ss_dssp EEEEECCTTSC------------------CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred ccccccccccc------------------ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence 54433221110 000011111222223333333222111 112223344455555555555
Q ss_pred cceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCccee--
Q 045487 399 NLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSG-- 476 (729)
Q Consensus 399 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-- 476 (729)
.+.... .+....+++.|++.+|.+....+ ..++.|+.+.+..+...... ....+++|+.+++++|.+..
T Consensus 317 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-----~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 317 TIERVK--DFSYNFGWQHLELVNCKFGQFPT-----LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp EEEECG--GGGSCCCCSEEEEESCEESSCCC-----CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEE
T ss_pred cccccc--ccccchhhhhhhcccccccCcCc-----ccchhhhhcccccccCCCCc--ccccccccccchhhcccccccc
Confidence 544332 23444556666666655432211 11455555555555443221 12234555555555554421
Q ss_pred ccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCccccc
Q 045487 477 LIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGR 556 (729)
Q Consensus 477 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 556 (729)
..+..+..+.+|+.+++..+..... ...+..+++|+.++++.+ .....
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~~~~-------~~~~~~l~~L~~l~l~~~-------------------------~~~~~ 435 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGVITM-------SSNFLGLEQLEHLDFQHS-------------------------NLKQM 435 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSEEEE-------CSCCTTCTTCCEEECTTS-------------------------EEEST
T ss_pred ccccchhhhhhhhhhhccccccccc-------cccccccccccchhhhhc-------------------------ccccc
Confidence 2223333444444444444433221 012223344444444333 33222
Q ss_pred C-CccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcc-cccCChhccCCCCCCEEECcCCccccccChhhc
Q 045487 557 I-PKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKF-EGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLG 634 (729)
Q Consensus 557 ~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 634 (729)
. +..+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+ ....|..+..+++|++|++++|++++..|..|.
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence 2 23356677778888888887777777777778888888887764 334566777777888888888888777777777
Q ss_pred CCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCC-CCCCEEeCCCCccc
Q 045487 635 DLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNL-KAVVNIDLSWNRLS 698 (729)
Q Consensus 635 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~ls~n~~~ 698 (729)
++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+ ++|+.|++++|++.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 78888888888888877777777778888888888888877777777776 57888888877775
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-45 Score=405.44 Aligned_cols=328 Identities=20% Similarity=0.269 Sum_probs=224.0
Q ss_pred cccccc--CCCCccEEEcccccceeeCCccccCCCCCcEEECcCcc-Ccc-cCCCcccc----CCCCCCcEEECCCCcCc
Q 045487 380 IPQEIG--NLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNT-FSG-NLPSSKNL----IGLPNLELLNLGLNNFS 451 (729)
Q Consensus 380 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~----~~~~~L~~L~l~~~~~~ 451 (729)
+|..++ .+++|++|++++|.+.+.+|..+.++++|+.|++++|. +.+ .+|..+.. ..+++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 444444 45555555555555555555455555555555555554 443 33322211 11255555555555555
Q ss_pred ccCCc--chhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCC-CcEEEccCCcc
Q 045487 452 GSIPS--FCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKS-LKVIVLSENPL 528 (729)
Q Consensus 452 ~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~ 528 (729)
.+|. .+.++++|+.|++++|.+.+.+| .+..+++|+.|++++|+++. ++..+..+++ |++|++++|.+
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-------IPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-------CCTTSEEECTTCCEEECCSSCC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-------ccHhhhhhcccCcEEEccCCcC
Confidence 4444 55555555555555555555555 55555666666666665552 2234555555 66666666666
Q ss_pred cccCCcchhcCc-cccceEecccCcccccCCcccc-------CCCCccEEEccCCcccccCCccccccccCceEecCCCc
Q 045487 529 DGVLPSSIGNHS-VSVEEIYMYKCNIHGRIPKEIG-------SLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNK 600 (729)
Q Consensus 529 ~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 600 (729)
. .+|..+.... .+|+.|++++|.+.+.+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 5 4555443321 2577777777777776666666 67789999999999984444445678999999999999
Q ss_pred ccccCChhc-cCC-------CCCCEEECcCCccccccChhhc--CCCCCCEEECcCCcCccCCChhhhccCCCCEEeC--
Q 045487 601 FEGPIPQEF-CHF-------SRLYEVDMNGNKLSGSIPSCLG--DLNSLRILSLSSNELTSIIPSTFWNLEDILSFDF-- 668 (729)
Q Consensus 601 l~~~~~~~~-~~l-------~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L-- 668 (729)
++ .+|... ... ++|++|++++|+++ .+|..+. .+++|++|++++|.+++ +|..+..+++|+.|++
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 98 445443 322 28999999999999 7777776 89999999999999998 8889999999999999
Q ss_pred ----CCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCcccc
Q 045487 669 ----SSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQG 723 (729)
Q Consensus 669 ----~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~~ 723 (729)
++|++.+.+|..+.++++|+.|++++|++ +.+|..+. ++|++|++++|++..
T Consensus 546 N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 56788899999999999999999999999 58888765 899999999998865
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-43 Score=401.14 Aligned_cols=403 Identities=17% Similarity=0.204 Sum_probs=209.0
Q ss_pred cccCCCCCccccCCCCCCEEEcccCcCcc-----------------cCChhhh--CCCCCcEEEeecCcCccccChhhhh
Q 045487 228 NQFTGRLPRDLGNLTRLKSLYLGFNNLIG-----------------EIPEELG--NLAELEMLVLTSNLLTGAIPASIFN 288 (729)
Q Consensus 228 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~ 288 (729)
|.+++ +|..++++++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+..
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 33443 44444444445555554444444 2555544 5555666666555555555555555
Q ss_pred hccccceEEcccCc-ccc-cCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCc--CccCCC
Q 045487 289 LSSMLTALDFTNNS-LTG-SFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPR--DLGNST 364 (729)
Q Consensus 289 ~~~~L~~L~l~~~~-l~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~--~~~~l~ 364 (729)
+++ |+.|++++|. +.+ .+|..+.... ..+..+++|+.|++++|.++ .+|. .+..++
T Consensus 514 L~~-L~~L~Ls~N~~lsg~~iP~~i~~L~------------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 514 LPE-LQSLNIACNRGISAAQLKADWTRLA------------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp CSS-CCEEECTTCTTSCHHHHHHHHHHHH------------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred CCC-CCEEECcCCCCcccccchHHHHhhh------------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 555 5555555554 544 4444322110 01112334444444444444 3343 444444
Q ss_pred CCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCC-CcEEECcCccCcccCCCccccCCCCCCcEE
Q 045487 365 KLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNIST-LKILSLFNNTFSGNLPSSKNLIGLPNLELL 443 (729)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 443 (729)
+|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|........++|+.|
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 4444444444444 444 4444555555555555544 34444555555 555555555554 34433332223345566
Q ss_pred ECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEc
Q 045487 444 NLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVL 523 (729)
Q Consensus 444 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 523 (729)
++++|.+.+.+|....... ...+++|+.|++++|++...+. ..+..+++|+.|++
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~-------------------~~~~~~L~~L~Ls~N~L~~lp~------~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMD-------------------DYKGINASTVTLSYNEIQKFPT------ELFATGSPISTIIL 704 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTT-------------------TCCCCCEEEEECCSSCCCSCCH------HHHHTTCCCSEEEC
T ss_pred ECcCCcCCCccccchhhhc-------------------cccCCCcCEEEccCCcCCccCH------HHHccCCCCCEEEC
Confidence 6666555543332110000 0012234444444444332211 12234455555555
Q ss_pred cCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCcccc--ccccCceEecCCCcc
Q 045487 524 SENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLG--RLKKLQGLYLQNNKF 601 (729)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~n~l 601 (729)
++|.+. .+|..+.... +..+.++++|+.|++++|+++ .+|..+. .+++|+.|++++|++
T Consensus 705 s~N~L~-~ip~~~~~~~-----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L 765 (876)
T 4ecn_A 705 SNNLMT-SIPENSLKPK-----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF 765 (876)
T ss_dssp CSCCCS-CCCTTSSSCT-----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChHHhccc-----------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCC
Confidence 555544 2332221100 011234456777777777776 5565554 667777777777777
Q ss_pred cccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccC
Q 045487 602 EGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEI 681 (729)
Q Consensus 602 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 681 (729)
++ +|..+..+++|+.|++++|+ ++++|.+.+.+|..+..+++|+.|+|++|++ +.+|..+
T Consensus 766 ~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 766 SS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp SS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred Cc-cchhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 65 56666667777777776655 4456777777777777788888888888887 5777665
Q ss_pred cCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCcc
Q 045487 682 GNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKL 721 (729)
Q Consensus 682 ~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l 721 (729)
. ++|+.|+|++|++....+..+.....+..+.+.+|+.
T Consensus 826 ~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 826 T--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp C--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred c--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 5 5788888888887766555555444455555555543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-43 Score=384.33 Aligned_cols=459 Identities=20% Similarity=0.208 Sum_probs=262.0
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCC
Q 045487 75 TSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNN 154 (729)
Q Consensus 75 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 154 (729)
+.++++++++. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 35677777776 4565554 67777777777777666667777777777777777777666677777777777777777
Q ss_pred cCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcC-CCCccccccCCCCeEeccccccCCC
Q 045487 155 LLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKG-PIPNNLWHCKGLSSASLSFNQFTGR 233 (729)
Q Consensus 155 ~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~ 233 (729)
.++ .+|.. .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+.+
T Consensus 80 ~l~-~lp~~--~l--------------------------~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~- 129 (520)
T 2z7x_B 80 KLV-KISCH--PT--------------------------VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK- 129 (520)
T ss_dssp CCC-EEECC--CC--------------------------CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-
T ss_pred cee-ecCcc--cc--------------------------CCccEEeccCCccccccchhhhccCCcceEEEecCcccch-
Confidence 666 44432 11 666666666666654 345555555555555555555443
Q ss_pred CCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcC--ccccChhhhhhccccceEEcccCcccccCCchh
Q 045487 234 LPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLL--TGAIPASIFNLSSMLTALDFTNNSLTGSFPDDT 311 (729)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 311 (729)
..+..+++| +|++|++++|.+ .+..|..+..+......+++++|.+.+.++...
T Consensus 130 --~~~~~l~~L----------------------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~ 185 (520)
T 2z7x_B 130 --SSVLPIAHL----------------------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185 (520)
T ss_dssp --GGGGGGTTS----------------------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCC
T ss_pred --hhccccccc----------------------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhh
Confidence 233344444 004444444444 334444333332223345555565555555555
Q ss_pred hccCCCCcEEEccccc-------cCCCCCCCCCCCCCCCEEEccccccccccCcCcc---CCCCCcEEEeeCcccccccc
Q 045487 312 CHGLPRLKGLYMSYNQ-------FKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLG---NSTKLKSLHLGLNNLIGEIP 381 (729)
Q Consensus 312 ~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~ 381 (729)
+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+.+..+..+. ..++|++|++++|.+.+.+|
T Consensus 186 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 264 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264 (520)
T ss_dssp CTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCC
T ss_pred hhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccc
Confidence 5555556666666654 332222 445556666666666655432111110 12456666666666655555
Q ss_pred ccc-----cCCCCccEEEcccccceeeCC-ccccCC---CCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcc
Q 045487 382 QEI-----GNLRNLEILGIDQSNLVGFVP-DTILNI---STLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSG 452 (729)
Q Consensus 382 ~~~-----~~l~~L~~L~l~~~~~~~~~~-~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 452 (729)
..+ ..+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+. .
T Consensus 265 ~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~--------------------------~ 316 (520)
T 2z7x_B 265 FRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV--------------------------H 316 (520)
T ss_dssp CCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC--------------------------C
T ss_pred cchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc--------------------------c
Confidence 555 5555566666555555 222 222222 34555555555443 2
Q ss_pred cCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccC
Q 045487 453 SIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVL 532 (729)
Q Consensus 453 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 532 (729)
.. ....+++|+.|++++|.+++..|..+..+++|++|++++|+++..+. ++..+..+++|++|++++|.+.+.+
T Consensus 317 ~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 317 ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK----IAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH----HHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc----chHHHhhCCCCCEEECCCCcCCccc
Confidence 11 01344455555555555555455555566666666666666554211 2345666777777777777665433
Q ss_pred CcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCC
Q 045487 533 PSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHF 612 (729)
Q Consensus 533 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 612 (729)
|.. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+
T Consensus 391 ~~~------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l 443 (520)
T 2z7x_B 391 KKG------------------------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKL 443 (520)
T ss_dssp GGC------------------------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred ccc------------------------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcC
Confidence 321 144556777777777777665555443 57777777777777 566666677
Q ss_pred CCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccC
Q 045487 613 SRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSI 652 (729)
Q Consensus 613 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 652 (729)
++|++|++++|+++...+..+..+++|++|++++|++...
T Consensus 444 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 7777788877777733333377777788888888877654
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.7e-43 Score=383.33 Aligned_cols=455 Identities=19% Similarity=0.197 Sum_probs=224.5
Q ss_pred cEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecC
Q 045487 197 KGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSN 276 (729)
Q Consensus 197 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 276 (729)
+++++++|.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46778888777 5666655 67788888888777666667777777888888777777776777777777777777777
Q ss_pred cCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEcccccccccc
Q 045487 277 LLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRI 356 (729)
Q Consensus 277 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~ 356 (729)
+++ .+|.. .+++ |++|++++|.+.+. ..|..+..+++|++|++++|.+.+
T Consensus 80 ~l~-~lp~~--~l~~-L~~L~L~~N~l~~~------------------------~~p~~~~~l~~L~~L~L~~n~l~~-- 129 (520)
T 2z7x_B 80 KLV-KISCH--PTVN-LKHLDLSFNAFDAL------------------------PICKEFGNMSQLKFLGLSTTHLEK-- 129 (520)
T ss_dssp CCC-EEECC--CCCC-CSEEECCSSCCSSC------------------------CCCGGGGGCTTCCEEEEEESSCCG--
T ss_pred cee-ecCcc--ccCC-ccEEeccCCccccc------------------------cchhhhccCCcceEEEecCcccch--
Confidence 766 45543 3333 55555555544421 233444455555555555555443
Q ss_pred CcCccCCCCC--cEEEeeCccc--cccccccccCCC-CccEEEcccccceeeCC-ccccCCCCCcEEECcCcc-------
Q 045487 357 PRDLGNSTKL--KSLHLGLNNL--IGEIPQEIGNLR-NLEILGIDQSNLVGFVP-DTILNISTLKILSLFNNT------- 423 (729)
Q Consensus 357 ~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~------- 423 (729)
..+..+++| ++|++++|.+ .+..|..+..+. ....+++++|.+.+..+ ..+..+++|+.+++++|.
T Consensus 130 -~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 130 -SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp -GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred -hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 123334444 5555555555 444444443333 12233344444333222 123344555555555443
Q ss_pred CcccCCCccccCCCCCCcEEECCCCcCcccCCcch---hcCCCCcEEEccCCcceeccCccc-----cccCCCcEEeccC
Q 045487 424 FSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFC---FNASKLYALELGYNSFSGLIPEAL-----GNLRNLKRLGLRR 495 (729)
Q Consensus 424 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~ 495 (729)
+.+.++ .+..+++|+.|++++|.+.+..+..+ ...++|+.|++++|.+.+..|..+ ..+++|+.+++++
T Consensus 209 ~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 209 FLSILA---KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285 (520)
T ss_dssp HHHHHH---GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred eecchh---hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence 222222 12224555555555554443211111 113456666666666665555555 5566666666666
Q ss_pred CcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCC
Q 045487 496 NYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDN 575 (729)
Q Consensus 496 ~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 575 (729)
|.+ ..+.. ....+....+|+.|++++|.+.... +....+++++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 286 n~~-~~p~~---~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 286 DVF-GFPQS---YIYEIFSNMNIKNFTVSGTRMVHML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358 (520)
T ss_dssp CCC-CSCTH---HHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS
T ss_pred cce-ecchh---hhhcccccCceeEEEcCCCcccccc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC
Confidence 655 22110 0011111245666666666543211 0011124444444444444444444444455555555555
Q ss_pred cccc--cCCccccccccCceEecCCCcccccCChh-ccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccC
Q 045487 576 NLSG--SLPMTLGRLKKLQGLYLQNNKFEGPIPQE-FCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSI 652 (729)
Q Consensus 576 ~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 652 (729)
++++ .+|..++.+++|++|++++|.+++.+|.. +..+++|++|++++|++++..|..+. ++|++|++++|.++ .
T Consensus 359 ~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ 435 (520)
T 2z7x_B 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-S 435 (520)
T ss_dssp CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-C
T ss_pred ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-c
Confidence 5443 22333444445555555555544423322 34444455555555544444433332 34455555555444 3
Q ss_pred CChhhhccCCCCEEeCCCCcCcccCCcc-CcCCCCCCEEeCCCCcccc
Q 045487 653 IPSTFWNLEDILSFDFSSNSLNGSLPLE-IGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 653 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~ls~n~~~~ 699 (729)
+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++..
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 4444444444555555555444 22322 4444444455555444443
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2e-40 Score=374.12 Aligned_cols=564 Identities=20% Similarity=0.194 Sum_probs=378.5
Q ss_pred CcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEc
Q 045487 72 NRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVL 151 (729)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 151 (729)
..++.|+++++.+++..+.+|.++++|++|+|++|.+++..+.+|+++++|++|+|++|++++..+..|+++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46899999999999766678999999999999999999888889999999999999999999666678999999999999
Q ss_pred cCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcC-CCCccccccCCCCeEecccccc
Q 045487 152 NNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKG-PIPNNLWHCKGLSSASLSFNQF 230 (729)
Q Consensus 152 ~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~ 230 (729)
++|.+++..+..++++ ++|++|++++|.+++ ..|..+..+++|++|++++|.+
T Consensus 132 s~N~l~~l~~~~~~~L--------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 132 VETNLASLENFPIGHL--------------------------KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TTSCCCCSTTCCCTTC--------------------------TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCcCCCCChhhhhcC--------------------------cccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 9999984333345555 778888888887764 3567777788888888888888
Q ss_pred CCCCCccccCCCCC----CEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccCh-hhhhhccccceEEcccCcccc
Q 045487 231 TGRLPRDLGNLTRL----KSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPA-SIFNLSSMLTALDFTNNSLTG 305 (729)
Q Consensus 231 ~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~ 305 (729)
.+..+..+..++++ ..++++.|.+....+..+ ....++.+++.++.....++. .+..+.. ++...+..+....
T Consensus 186 ~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~-l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 186 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAG-LEVHRLVLGEFRN 263 (635)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTT-CEEEEEEEECCTT
T ss_pred cccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcc-ccccccccccccc
Confidence 77666666554443 467777777775544433 334567777777755433332 2233333 4444443322110
Q ss_pred cCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccc---cccCcCccCCCCCcEEEeeCccccccccc
Q 045487 306 SFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFT---GRIPRDLGNSTKLKSLHLGLNNLIGEIPQ 382 (729)
Q Consensus 306 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 382 (729)
.. .+.......+.....+...++..+... ...+..+....+++.+.+.++.+....
T Consensus 264 ~~-------------------~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-- 322 (635)
T 4g8a_A 264 EG-------------------NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-- 322 (635)
T ss_dssp SC-------------------CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--
T ss_pred cc-------------------ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--
Confidence 00 000011111222222333333222111 122233444556666666666554322
Q ss_pred cccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcc--cCCcchhc
Q 045487 383 EIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSG--SIPSFCFN 460 (729)
Q Consensus 383 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~ 460 (729)
.+.....++.|++.+|.+....+ ..++.|+.+++..|...... ....+++|+.++++.|.+.. ..+.....
T Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 323 DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC----CCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc----ccccccccccchhhccccccccccccchhh
Confidence 23445566777777666554332 23566777777776654322 12237788888888887653 34556667
Q ss_pred CCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCc
Q 045487 461 ASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHS 540 (729)
Q Consensus 461 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 540 (729)
..+++.+++..+..... +..+..+++|+.+++..+....... ...+..+++++.++++.|.+
T Consensus 396 ~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~-----~~~~~~l~~l~~l~ls~n~l------------ 457 (635)
T 4g8a_A 396 TISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHT------------ 457 (635)
T ss_dssp CSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTS-----SCTTTTCTTCCEEECTTSCC------------
T ss_pred hhhhhhhhccccccccc-cccccccccccchhhhhcccccccc-----cccccccccccccccccccc------------
Confidence 78889999888887654 4467788999999998887655421 13345556566666655544
Q ss_pred cccceEecccCcccccCCccccCCCCccEEEccCCccc-ccCCccccccccCceEecCCCcccccCChhccCCCCCCEEE
Q 045487 541 VSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLS-GSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVD 619 (729)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 619 (729)
.+..+..+..+++++.|++++|+.. +..|..+..+++|++|++++|++++..|..|.++++|++|+
T Consensus 458 -------------~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 458 -------------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp -------------EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred -------------ccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 3444555777889999999999855 35788899999999999999999999999999999999999
Q ss_pred CcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhcc-CCCCEEeCCCCcCcccCC-ccCcCC-CCCCEEeCCCCc
Q 045487 620 MNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNL-EDILSFDFSSNSLNGSLP-LEIGNL-KAVVNIDLSWNR 696 (729)
Q Consensus 620 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-~~l~~l-~~L~~L~ls~n~ 696 (729)
|++|++++..+..|..+++|++|++++|++++..|..+..+ ++|+.|+|++|++...-. ..|..+ ..-.........
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~ 604 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 604 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGG
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCC
Confidence 99999998889999999999999999999999999999988 789999999999974211 111110 000000011122
Q ss_pred cccccccccccCCCCCeeeccCCccccC
Q 045487 697 LSGNIPSTIVGLKNLQRLSLKHNKLQGP 724 (729)
Q Consensus 697 ~~~~~p~~l~~l~~L~~l~l~~n~l~~~ 724 (729)
+.=..|..+.+. .+..++++ |+++|-
T Consensus 605 ~~C~~P~~~~g~-~l~~~~~~-C~~~g~ 630 (635)
T 4g8a_A 605 MECATPSDKQGM-PVLSLNIT-CQMTGH 630 (635)
T ss_dssp CBBCSSTTTTTC-BGGGCCCC-C-----
T ss_pred ceeCCchHHCCC-EeeeeccC-CCCCCC
Confidence 222356665553 47777874 888874
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.9e-40 Score=365.18 Aligned_cols=460 Identities=19% Similarity=0.190 Sum_probs=215.6
Q ss_pred CCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEe
Q 045487 194 PRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVL 273 (729)
Q Consensus 194 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 273 (729)
...++++++++.++ .+|..+. ++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..+.++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34466777777666 3555443 56777777777776666666777777777777777777666666777777777777
Q ss_pred ecCcCccccChhhhhhccccceEEcccCcccccCC-chhhccCCCCcEEEccccccCCCCCCCCCCCCCC--CEEEcccc
Q 045487 274 TSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFP-DDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDL--STVSLSFN 350 (729)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~L~~~ 350 (729)
++|.++ .+|.. .+++ |++|++++|.+.+ ++ ...+..+++|++|++++|.+.+. .+..+++| ++|++++|
T Consensus 108 s~N~l~-~lp~~--~l~~-L~~L~Ls~N~l~~-l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMAS-LRHLDLSFNDFDV-LPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp TTSCCC-EECSC--CCTT-CSEEECCSSCCSB-CCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred CCCcCC-ccCcc--cccc-CCEEECCCCCccc-cCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 777666 55544 3444 6666666666552 22 12333444555555555555432 22233333 56666665
Q ss_pred cc--ccccCcCccCCC-CCcEEEeeCccccccccc-cccCCCCccEEEcccccce----eeCCccccCCCCCcEEECcCc
Q 045487 351 QF--TGRIPRDLGNST-KLKSLHLGLNNLIGEIPQ-EIGNLRNLEILGIDQSNLV----GFVPDTILNISTLKILSLFNN 422 (729)
Q Consensus 351 ~l--~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~n 422 (729)
.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|... ......+..+++|+.+++.++
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 55 444444444332 011334444444433222 2334455555555554210 001122344444554444444
Q ss_pred cCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccc-----cccCCCcEEeccCCc
Q 045487 423 TFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEAL-----GNLRNLKRLGLRRNY 497 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~~~ 497 (729)
.+.+. .+.+. +. ....++|+.|++++|.+.+.+|..+ ..++.|+.+++..+.
T Consensus 260 ~l~~~---------------------~~~~~-~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 260 ETTWK---------------------CSVKL-FQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp EECHH---------------------HHHHH-HH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred cCcHH---------------------HHHHH-HH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence 33211 00000 00 1112355566666665555555444 445555555555554
Q ss_pred ccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcc
Q 045487 498 LTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNL 577 (729)
Q Consensus 498 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 577 (729)
+ ..+.. ....+....+|+++++++|.+.... +....+++++|++++|.+.+.+|..+..+++|++|++++|++
T Consensus 317 ~-~~p~~---~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 389 (562)
T 3a79_B 317 F-LFSKE---ALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389 (562)
T ss_dssp C-SSCHH---HHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred e-ecChh---hhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence 4 22111 0111222256777777777653211 001111444444444444444444444444455555554444
Q ss_pred ccc--CCccccccccCceEecCCCcccccCCh-hccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCC
Q 045487 578 SGS--LPMTLGRLKKLQGLYLQNNKFEGPIPQ-EFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIP 654 (729)
Q Consensus 578 ~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 654 (729)
++. +|..+.++++|+.|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|.++ .+|
T Consensus 390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip 466 (562)
T 3a79_B 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIP 466 (562)
T ss_dssp CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCC
T ss_pred CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccC
Confidence 431 123344444444444444444442222 233444444444444444433333322 34444444444444 233
Q ss_pred hhhhccCCCCEEeCCCCcCcccCCcc-CcCCCCCCEEeCCCCccc
Q 045487 655 STFWNLEDILSFDFSSNSLNGSLPLE-IGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 655 ~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~ls~n~~~ 698 (729)
..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++.
T Consensus 467 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred hhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 33334444444444444444 22222 444444444444444444
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.8e-39 Score=357.31 Aligned_cols=456 Identities=23% Similarity=0.251 Sum_probs=271.5
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCC
Q 045487 75 TSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNN 154 (729)
Q Consensus 75 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 154 (729)
+.++++++++++ +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 788899888874 676554 78999999999998888888999999999999999999777888999999999999999
Q ss_pred cCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcC-CCCccccccCCCCeEeccccccCCC
Q 045487 155 LLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKG-PIPNNLWHCKGLSSASLSFNQFTGR 233 (729)
Q Consensus 155 ~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~ 233 (729)
.++ .+|.. .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+.+.
T Consensus 111 ~l~-~lp~~--~l--------------------------~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~ 161 (562)
T 3a79_B 111 RLQ-NISCC--PM--------------------------ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161 (562)
T ss_dssp CCC-EECSC--CC--------------------------TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT
T ss_pred cCC-ccCcc--cc--------------------------ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC
Confidence 887 55543 22 888888888888775 3456777777777777777776643
Q ss_pred CCccccCCCCC--CEEEcccCcC--cccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCc
Q 045487 234 LPRDLGNLTRL--KSLYLGFNNL--IGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPD 309 (729)
Q Consensus 234 ~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 309 (729)
.+..+++| ++|++++|.+ .+..+..+..+.. + .-.+++++|.+.+.++.
T Consensus 162 ---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~-----------------------~l~l~l~~n~~~~~~~~ 214 (562)
T 3a79_B 162 ---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-T-----------------------VLHLVFHPNSLFSVQVN 214 (562)
T ss_dssp ---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-E-----------------------EEEEEECSSSCCCCCCE
T ss_pred ---chhhhhhceeeEEEeecccccccccCcccccccCc-c-----------------------eEEEEecCccchhhhhh
Confidence 23344444 6666666666 5555554444320 1 11233444444433443
Q ss_pred hhhccCCCCcEEEccccccC----CCCCCCCCCCCCCCEEEccccccccc----cCcCccCCCCCcEEEeeCcccccccc
Q 045487 310 DTCHGLPRLKGLYMSYNQFK----GPIPNNLWHCKDLSTVSLSFNQFTGR----IPRDLGNSTKLKSLHLGLNNLIGEIP 381 (729)
Q Consensus 310 ~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~ 381 (729)
..+..+++|+.+++++|... ......+..+++|+.+++.++.+.+. .+..+ ..++|++|++++|.+.+.+|
T Consensus 215 ~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip 293 (562)
T 3a79_B 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERID 293 (562)
T ss_dssp EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCC
T ss_pred hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeecccc
Confidence 33333444555555544210 00011223344445555544443321 11111 12355555555555555555
Q ss_pred ccc-----cCCCCccEEEcccccceeeCC-cccc---CCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcc
Q 045487 382 QEI-----GNLRNLEILGIDQSNLVGFVP-DTIL---NISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSG 452 (729)
Q Consensus 382 ~~~-----~~l~~L~~L~l~~~~~~~~~~-~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 452 (729)
..+ ..++.|+.+++..+.+ .+| ..+. ...+|+.|++++| .+..
T Consensus 294 ~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n--------------------------~~~~ 345 (562)
T 3a79_B 294 REEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDT--------------------------PFIH 345 (562)
T ss_dssp CCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESS--------------------------CCCC
T ss_pred chhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCC--------------------------Cccc
Confidence 444 3333333333333333 112 1111 1134444554444 4322
Q ss_pred cCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccC
Q 045487 453 SIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVL 532 (729)
Q Consensus 453 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 532 (729)
.. ....+++|+.|++++|.+++..|..+..+++|++|++++|+++.... ++..+..+++|++|++++|.+.+.+
T Consensus 346 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 346 MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK----VALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH----HHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc----chhhhcCCCCCCEEECCCCcCCCcc
Confidence 11 11344555556666665555555566666666666666666665321 2244566777777777777666433
Q ss_pred CcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCC
Q 045487 533 PSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHF 612 (729)
Q Consensus 533 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 612 (729)
|.. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+
T Consensus 420 ~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l 472 (562)
T 3a79_B 420 YDR------------------------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472 (562)
T ss_dssp SSC------------------------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred Chh------------------------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence 332 244556777777777777655554443 57777777777777 556666677
Q ss_pred CCCCEEECcCCccccccChh-hcCCCCCCEEECcCCcCccC
Q 045487 613 SRLYEVDMNGNKLSGSIPSC-LGDLNSLRILSLSSNELTSI 652 (729)
Q Consensus 613 ~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~ 652 (729)
++|++|++++|+++ .+|.. +..+++|+.|++++|++.+.
T Consensus 473 ~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 473 QALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 77777777777777 34443 77777788888888777654
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-38 Score=340.48 Aligned_cols=380 Identities=19% Similarity=0.216 Sum_probs=178.6
Q ss_pred ceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEcccccccccc-CcCccCCCCCcEEEee
Q 045487 294 TALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRI-PRDLGNSTKLKSLHLG 372 (729)
Q Consensus 294 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~-~~~~~~l~~L~~L~l~ 372 (729)
+.++.+++.++ .+|. ..+++++|++++|.+.+..+..+..+++|++|++++|.+.+.+ +..|..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34455555444 4443 1234555555555555444445555555555555555444222 3344455555555555
Q ss_pred CccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcc
Q 045487 373 LNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSG 452 (729)
Q Consensus 373 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 452 (729)
+|.+.+..|..+..+++|++|++++|.+.+..+. ...+..+++|++|++++|.+.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------------~~~~~~l~~L~~L~L~~n~l~~ 143 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS------------------------GNFFKPLTSLEMLVLRDNNIKK 143 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH------------------------SSTTTTCTTCCEEECCSSBCCS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccC------------------------cccccCcccCCEEECCCCccCc
Confidence 5555444444455555555555555544442222 2222334444444444444444
Q ss_pred cCCcc-hhcCCCCcEEEccCCcceeccCcccccc--CCCcEEeccCCcccCCcchhhh--hhhhhccCCCCcEEEccCCc
Q 045487 453 SIPSF-CFNASKLYALELGYNSFSGLIPEALGNL--RNLKRLGLRRNYLTSSTSELMS--FFSALVNCKSLKVIVLSENP 527 (729)
Q Consensus 453 ~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~ 527 (729)
..|.. +..+++|+.|++++|.+.+..+..+..+ .+|+.+++++|.+......... ....+..+++|++|++++|.
T Consensus 144 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 43332 4444555555555555544444444433 4455555555554443221100 11122334556666666665
Q ss_pred ccccCCcchhcC--ccccceEecccCcccccC----------Ccccc--CCCCccEEEccCCcccccCCccccccccCce
Q 045487 528 LDGVLPSSIGNH--SVSVEEIYMYKCNIHGRI----------PKEIG--SLINLTTLGLGDNNLSGSLPMTLGRLKKLQG 593 (729)
Q Consensus 528 ~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~----------~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 593 (729)
+.+..|..+... ..+++.|++++|...+.. +..+. ..++|++|++++|.+.+..|..++.+++|++
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 303 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCE
Confidence 555444443322 124555555554332211 00111 1234555555555555444555555555555
Q ss_pred EecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcC
Q 045487 594 LYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSL 673 (729)
Q Consensus 594 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 673 (729)
|++++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|++
T Consensus 304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 55555555544444555555555555555555544445555555555555555555555555555555555555555555
Q ss_pred cccCCccCcCCCCCCEEeCCCCccccccc
Q 045487 674 NGSLPLEIGNLKAVVNIDLSWNRLSGNIP 702 (729)
Q Consensus 674 ~~~~~~~l~~l~~L~~L~ls~n~~~~~~p 702 (729)
++..+..+..+++|++|++++|++.+..|
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 54333344455555555555555554443
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.2e-39 Score=324.78 Aligned_cols=293 Identities=31% Similarity=0.500 Sum_probs=205.6
Q ss_pred cCCHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCc--cceeEeeCCC--CcEEEEEcCCCCCcc--ccCCCCCCCCC
Q 045487 24 ANISRDQDALLSVKAHIINDNPRNILAQNWTSNTSVCS--WMGITCDIYG--NRVTSLTIPDLGLTG--TIPSYLGNLSS 97 (729)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~--~~~~~l~~l~~ 97 (729)
.|.++|++||++||+++ .+|. .+ .+|..+++||. |.||+|+... ++|++|+++++.+.+ .+|+.+.++++
T Consensus 2 ~c~~~~~~aL~~~k~~~--~~~~-~l-~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDL--GNPT-TL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CSCHHHHHHHHHHHHHT--TCCG-GG-TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCCHHHHHHHHHHHHhc--CCcc-cc-cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 47888999999999999 5665 55 89988889999 9999998654 899999999999999 89999999999
Q ss_pred CCEEeCCC-ccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccc
Q 045487 98 LQTLVLSH-NWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDF 176 (729)
Q Consensus 98 L~~L~Ls~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l 176 (729)
|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|..+.++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--------- 148 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL--------- 148 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC---------
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC---------
Confidence 99999995 89999999999999999999999999998999999999999999999999998888888887
Q ss_pred cccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccC-CCCeEeccccccCCCCCccccCCCCCCEEEcccCcCc
Q 045487 177 SNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK-GLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLI 255 (729)
Q Consensus 177 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 255 (729)
++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..++.++ |++|++++|.+.
T Consensus 149 -----------------~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 149 -----------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp -----------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred -----------------CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 4455555555555444555555544 555555555555544455554444 555555555555
Q ss_pred ccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCC
Q 045487 256 GEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNN 335 (729)
Q Consensus 256 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 335 (729)
+..+..+.++++|++|++++|.+.+..|. +..+++ |++|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~-L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN-LNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTT-CCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCCS
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCC-CCEEECcCCcccCcCChHHh-cCcCCCEEECcCCcccccCCCC
Confidence 44555555555555555555555433332 333333 55555555555544444332 3344555555555555554443
Q ss_pred CCCCCCCCEEEccccc
Q 045487 336 LWHCKDLSTVSLSFNQ 351 (729)
Q Consensus 336 l~~~~~L~~L~L~~~~ 351 (729)
..+++|+.+++++|.
T Consensus 288 -~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNK 302 (313)
T ss_dssp -TTGGGSCGGGTCSSS
T ss_pred -ccccccChHHhcCCC
Confidence 455556666666654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-37 Score=331.50 Aligned_cols=384 Identities=19% Similarity=0.207 Sum_probs=312.6
Q ss_pred cEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCC-CCCCCCCCCCCEEEc
Q 045487 269 EMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPI-PNNLWHCKDLSTVSL 347 (729)
Q Consensus 269 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L 347 (729)
+.++.+++.++ .+|. .+..+++|++++|.+.+..| ..+..+++|++|++++|.+.+.+ +..+..+++|++|++
T Consensus 13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 45677777776 6775 33459999999999985444 44567888999999999987544 567999999999999
Q ss_pred cccccccccCcCccCCCCCcEEEeeCcccccccccc--ccCCCCccEEEcccccceeeCCcc-ccCCCCCcEEECcCccC
Q 045487 348 SFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQE--IGNLRNLEILGIDQSNLVGFVPDT-ILNISTLKILSLFNNTF 424 (729)
Q Consensus 348 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~~ 424 (729)
++|.+++..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999998765554 889999999999999999887776 78999999999999999
Q ss_pred cccCCCccccCCCCCCcEEECCCCcCcccCCcch--------hcCCCCcEEEccCCcceeccCcccccc---CCCcEEec
Q 045487 425 SGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFC--------FNASKLYALELGYNSFSGLIPEALGNL---RNLKRLGL 493 (729)
Q Consensus 425 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------~~~~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l 493 (729)
.+..+.........+|+.+++++|.+.+..+..+ ..+++|+.|++++|.+.+..+..+... ++|+.+++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 8777665554334789999999999876544332 245677888888887776666555443 66777777
Q ss_pred cCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcC-ccccceEecccCcccccCCccccCCCCccEEEc
Q 045487 494 RRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNH-SVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGL 572 (729)
Q Consensus 494 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 572 (729)
++|....... ..+.+.+..+..+... .++++.|++++|.+.+..|..+..+++|++|++
T Consensus 247 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 306 (455)
T 3v47_A 247 SNSYNMGSSF--------------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306 (455)
T ss_dssp TTCTTTSCCT--------------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccc--------------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEEC
Confidence 7665443210 0111111111111111 238999999999999999999999999999999
Q ss_pred cCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccC
Q 045487 573 GDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSI 652 (729)
Q Consensus 573 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 652 (729)
++|++.+..|..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++.
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 99999988888999999999999999999988889999999999999999999988899999999999999999999998
Q ss_pred CChhhhccCCCCEEeCCCCcCcccCC
Q 045487 653 IPSTFWNLEDILSFDFSSNSLNGSLP 678 (729)
Q Consensus 653 ~~~~~~~l~~L~~L~L~~n~l~~~~~ 678 (729)
.+..+..+++|+.|++++|++++..|
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHhHhccCCcccEEEccCCCcccCCC
Confidence 88889999999999999999998777
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.6e-37 Score=329.32 Aligned_cols=422 Identities=23% Similarity=0.296 Sum_probs=249.2
Q ss_pred ccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccce
Q 045487 216 HCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTA 295 (729)
Q Consensus 216 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 295 (729)
+.+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+.+++.+|.. . .+++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~-~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------R-QAHE 75 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------H-TCSE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------c-CCCE
Confidence 357889999999988 68888899999999999999999888898888888887777665532 2 2889
Q ss_pred EEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCcc
Q 045487 296 LDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNN 375 (729)
Q Consensus 296 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 375 (729)
|++++|.++ .+|. .+++|++|++++|.+.+ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.
T Consensus 76 L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 76 LELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQ 142 (454)
T ss_dssp EECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSC
T ss_pred EEecCCccc-cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCC
Confidence 999999887 4554 24679999999998886 4543 4789999999998874 3321 2689999999998
Q ss_pred ccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCC
Q 045487 376 LIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIP 455 (729)
Q Consensus 376 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 455 (729)
+.+ +| .++.+++|++|++++|.+.+ +|.. .++|++|++++|.+.+ +|. +.++++|++|++++|.+.+ +|
T Consensus 143 l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~---~~~l~~L~~L~l~~N~l~~-l~ 211 (454)
T 1jl5_A 143 LEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPE---LQNLPFLTAIYADNNSLKK-LP 211 (454)
T ss_dssp CSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CTTCTTCCEEECCSSCCSS-CC
T ss_pred CCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Ccc---ccCCCCCCEEECCCCcCCc-CC
Confidence 885 66 58889999999999998876 4433 3589999999998875 442 4558899999999998875 33
Q ss_pred cchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcc
Q 045487 456 SFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSS 535 (729)
Q Consensus 456 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 535 (729)
.. .++|+.|++++|.+. .+| .+..+++|+.|++++|+++..+. ..++|++|++++|.+.+ +|..
T Consensus 212 ~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 212 DL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD----------LPPSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp CC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS----------CCTTCCEEECCSSCCSC-CCCC
T ss_pred CC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc----------cccccCEEECCCCcccc-cCcc
Confidence 32 258888888888887 445 37788888888888888776422 23678888888887765 3432
Q ss_pred hhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCC
Q 045487 536 IGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRL 615 (729)
Q Consensus 536 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 615 (729)
..++++|++++|.+.+ +|. ..++|++|++++|++++ ++.. .++|++|++++|++++ +|.. +++|
T Consensus 276 ----~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L 339 (454)
T 1jl5_A 276 ----PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRL 339 (454)
T ss_dssp ----CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTC
T ss_pred ----cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcC
Confidence 2377777777777665 121 12577777777777764 2211 2467777777777774 3433 4677
Q ss_pred CEEECcCCccccccChhhcCCCCCCEEECcCCcCcc--CCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCC
Q 045487 616 YEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTS--IIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLS 693 (729)
Q Consensus 616 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls 693 (729)
++|++++|+++ .+|. .+++|++|++++|.+++ .+|.++..+ +.|.+.+.+|.. +++|+.|+++
T Consensus 340 ~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls 404 (454)
T 1jl5_A 340 ERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVE 404 (454)
T ss_dssp CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---------------------
T ss_pred CEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECC
Confidence 77777777777 4454 35677777777777776 455544432 234444555542 3678888888
Q ss_pred CCcccc--ccccccccCCCCCeeeccCCccccCCCC
Q 045487 694 WNRLSG--NIPSTIVGLKNLQRLSLKHNKLQGPIPE 727 (729)
Q Consensus 694 ~n~~~~--~~p~~l~~l~~L~~l~l~~n~l~~~~p~ 727 (729)
+|++++ .+|. +++.|.+.+|.+.+.+|.
T Consensus 405 ~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 405 TNPLREFPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ------------------------------------
T ss_pred CCcCCccccchh------hHhheeCcCcccCCcccc
Confidence 888876 4443 356666777777776653
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.4e-37 Score=328.41 Aligned_cols=425 Identities=22% Similarity=0.261 Sum_probs=280.7
Q ss_pred CCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEe
Q 045487 194 PRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVL 273 (729)
Q Consensus 194 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 273 (729)
.+|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+.+++.+|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 8899999999999 79999999999999999999999999999999999887777766542 46788888
Q ss_pred ecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccc
Q 045487 274 TSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFT 353 (729)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~ 353 (729)
++|.++ .+|. .+..|++|++++|.+.+ +|.. +++|++|++++|.+.+. +.. .++|++|++++|.++
T Consensus 79 ~~~~l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 79 NNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp TTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS
T ss_pred cCCccc-cCCC----CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC
Confidence 888877 4454 22349999999998885 6643 46799999999988853 221 279999999999998
Q ss_pred cccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccc
Q 045487 354 GRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKN 433 (729)
Q Consensus 354 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 433 (729)
+ +| .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+.+ +| .+..+++|+.|++++|.+.+ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence 6 66 59999999999999999885 5544 3589999999999987 45 68999999999999999875 4332
Q ss_pred cCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhc
Q 045487 434 LIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALV 513 (729)
Q Consensus 434 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~ 513 (729)
.++|++|++++|.+. .+| .+..+++|+.|++++|.+.+. |. .+++|+.|++++|+++..+.
T Consensus 214 ---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l~~---------- 274 (454)
T 1jl5_A 214 ---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLPE---------- 274 (454)
T ss_dssp ---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCCC----------
T ss_pred ---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccccCc----------
Confidence 469999999999998 566 478999999999999999863 33 34899999999999887532
Q ss_pred cCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCce
Q 045487 514 NCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQG 593 (729)
Q Consensus 514 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 593 (729)
..++|+++++++|.+.+. + ..+++++.|++++|.+.+ ++. ..++|++|++++|++++ +|.. +++|++
T Consensus 275 ~~~~L~~L~ls~N~l~~l-~----~~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~ 341 (454)
T 1jl5_A 275 LPQSLTFLDVSENIFSGL-S----ELPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLER 341 (454)
T ss_dssp CCTTCCEEECCSSCCSEE-S----CCCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred ccCcCCEEECcCCccCcc-c----CcCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCE
Confidence 237899999999998862 1 223489999999999876 221 12589999999999985 5554 589999
Q ss_pred EecCCCcccccCChhccCCCCCCEEECcCCcccc--ccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCC
Q 045487 594 LYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSG--SIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSN 671 (729)
Q Consensus 594 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 671 (729)
|++++|+++ .+|. .+++|++|++++|++++ .+|..+. .| +.|.+.+.+|.. +++|+.|++++|
T Consensus 342 L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ls~N 406 (454)
T 1jl5_A 342 LIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL---PQNLKQLHVETN 406 (454)
T ss_dssp EECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC-----------------------
T ss_pred EECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc---cCcCCEEECCCC
Confidence 999999998 4565 47899999999999997 5665543 33 346677777764 578999999999
Q ss_pred cCcc--cCCccCcCCCCCCEEeCCCCccccccccccccC
Q 045487 672 SLNG--SLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGL 708 (729)
Q Consensus 672 ~l~~--~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l 708 (729)
++++ .+| ++++.|++.+|.+.+..+.+....
T Consensus 407 ~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 407 PLREFPDIP------ESVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp ---------------------------------------
T ss_pred cCCccccch------hhHhheeCcCcccCCccccCHHHh
Confidence 9986 555 357888899999988877665543
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-34 Score=311.39 Aligned_cols=345 Identities=26% Similarity=0.369 Sum_probs=248.0
Q ss_pred CCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEE
Q 045487 315 LPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILG 394 (729)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 394 (729)
+++++.|++.++.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4568999999998874 33 47788999999999999885543 8889999999999998886544 88899999999
Q ss_pred cccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcc
Q 045487 395 IDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSF 474 (729)
Q Consensus 395 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 474 (729)
+++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|++|++. +.+.+. ..+.++++|+.|++++|.+
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~---~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS---ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG---GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch---hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcC
Confidence 99998877643 7889999999999998764 22 35558889999886 344332 2367788888888888887
Q ss_pred eeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCccc
Q 045487 475 SGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIH 554 (729)
Q Consensus 475 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 554 (729)
.+. ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+...+ +|+.|++++|.+.
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDI--------TPLGILTNLDELSLNGNQLKDI--GTLASLT-NLTDLDLANNQIS 256 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCC
T ss_pred CCC--hhhccCCCCCEEEecCCccccc--------ccccccCCCCEEECCCCCcccc--hhhhcCC-CCCEEECCCCccc
Confidence 654 3477888888888888887765 3356678888888888877643 2344333 6777777777666
Q ss_pred ccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhc
Q 045487 555 GRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLG 634 (729)
Q Consensus 555 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 634 (729)
+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +.
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence 5433 6666777777777777664332 6667777777777777665433 5666777777777777765544 56
Q ss_pred CCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccc
Q 045487 635 DLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 635 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
.+++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 667777777777777654 456667777777777777766555 6667777777777777664
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-33 Score=303.37 Aligned_cols=379 Identities=26% Similarity=0.373 Sum_probs=225.6
Q ss_pred CCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCE
Q 045487 265 LAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLST 344 (729)
Q Consensus 265 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 344 (729)
+++++.|++.++.+. .+|. +..++. |++|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~-~~~l~~-L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG-VEYLNN-LTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT-GGGCTT-CCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc-hhhhcC-CCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 456666666666655 3442 334444 6666666655552 222 3344455555555555554332 455555555
Q ss_pred EEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccC
Q 045487 345 VSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTF 424 (729)
Q Consensus 345 L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 424 (729)
|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+. ..+..+++
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~----------- 178 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTT----------- 178 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTT-----------
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCC-----------
Confidence 5555555543221 4455555555555555442 22 24445555555553 222221 11444444
Q ss_pred cccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcch
Q 045487 425 SGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSE 504 (729)
Q Consensus 425 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 504 (729)
|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|+++..
T Consensus 179 ---------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--- 236 (466)
T 1o6v_A 179 ---------------LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--- 236 (466)
T ss_dssp ---------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC---
T ss_pred ---------------CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc---
Confidence 44455544444332 224445555555555555544333 44555666666666655543
Q ss_pred hhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCcc
Q 045487 505 LMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMT 584 (729)
Q Consensus 505 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 584 (729)
..+..+++|+.|++++|.+.+..+ +..++ +|++|++++|.+.+..+ +..+++|++|++++|++.+..+
T Consensus 237 -----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-- 304 (466)
T 1o6v_A 237 -----GTLASLTNLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-- 304 (466)
T ss_dssp -----GGGGGCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--
T ss_pred -----hhhhcCCCCCEEECCCCccccchh--hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--
Confidence 344555666666666666554332 33333 66666666666654333 6778899999999999886543
Q ss_pred ccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCC
Q 045487 585 LGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDIL 664 (729)
Q Consensus 585 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 664 (729)
+..+++|+.|++++|++++..+ +..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 7788999999999999887655 67889999999999998865 467889999999999999988766 88899999
Q ss_pred EEeCCCCcCcccCCccCc-------CCCCCCEEeCCCCcccc----ccccccccCCC
Q 045487 665 SFDFSSNSLNGSLPLEIG-------NLKAVVNIDLSWNRLSG----NIPSTIVGLKN 710 (729)
Q Consensus 665 ~L~L~~n~l~~~~~~~l~-------~l~~L~~L~ls~n~~~~----~~p~~l~~l~~ 710 (729)
.|++++|++++ .|..+. .+..+....++...+++ ..|.++.+++.
T Consensus 379 ~L~l~~n~~~~-~p~~~~~~~~ip~~~~~~~~~~~~~~~is~~g~~~~~~~~w~~~~ 434 (466)
T 1o6v_A 379 QLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434 (466)
T ss_dssp EEECCCEEEEC-CCBCCCSEEEEECCCBCTTSCBCCCSEESTTCEEETTEEEEECCC
T ss_pred EEeccCCcccC-CchhhcccceecccccccCCCeecCceecCCcEEeCCceEECCCC
Confidence 99999999885 333321 12334445556665654 35666666543
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.4e-34 Score=303.43 Aligned_cols=366 Identities=17% Similarity=0.138 Sum_probs=256.5
Q ss_pred CcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCC
Q 045487 254 LIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIP 333 (729)
Q Consensus 254 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 333 (729)
..+..+..++++++|++|++++|.+.+ +| .+..++. |++|++++|.+.+ ++ +..+++|++|++++|.+.+. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~-L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTG-LTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTT-CSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCC-CCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e
Confidence 333444567788889999999888874 45 5666666 8888888888874 43 44567788888888888764 2
Q ss_pred CCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCC
Q 045487 334 NNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNIST 413 (729)
Q Consensus 334 ~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 413 (729)
+..+++|++|++++|.+++ ++ +..+++|++|++++|.+.+. + ++.+++|++|++++|...+.+ .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCc
Confidence 6778888888888888875 33 77788888888888887753 2 667788888888887655544 3667788
Q ss_pred CcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEec
Q 045487 414 LKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGL 493 (729)
Q Consensus 414 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 493 (729)
|+.|++++|.+.+ ++ +..+++|+.|++++|.+++. .+..+++|+.|++++|.+++ +| +..+++|+.|++
T Consensus 172 L~~L~ls~n~l~~-l~----l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD----VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240 (457)
T ss_dssp CCEEECCSSCCCC-CC----CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred CCEEECCCCccce-ec----cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence 8888888887764 33 34477888888888877754 35667778888888887776 34 667777888888
Q ss_pred cCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEcc
Q 045487 494 RRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLG 573 (729)
Q Consensus 494 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 573 (729)
++|++++.+ ...+++|+.++++.+ +++.+++++|...+.+| +..+++|+.|+++
T Consensus 241 ~~N~l~~~~---------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 241 SVNPLTELD---------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVT 294 (457)
T ss_dssp CSSCCSCCC---------CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred eCCcCCCcC---------HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECC
Confidence 777777641 345667777777665 45667777777666665 4566777777777
Q ss_pred CCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCC
Q 045487 574 DNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSII 653 (729)
Q Consensus 574 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 653 (729)
+|...+.+|. ..++|+.|++++| ++|++|++++|++++. + +..+++|++|++++|++++.
T Consensus 295 ~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l- 354 (457)
T 3bz5_A 295 HNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF- 354 (457)
T ss_dssp TCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-
T ss_pred CCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc-
Confidence 7776655553 2345555555444 5677788888877763 2 67777788888887777752
Q ss_pred ChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccc
Q 045487 654 PSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIV 706 (729)
Q Consensus 654 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~ 706 (729)
+.|..|++++|.+.|. +++..|+.+++++|+++|.+|..+.
T Consensus 355 -------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 355 -------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp -------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred -------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 4556667777777654 3445677777778877777776543
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.3e-34 Score=302.96 Aligned_cols=413 Identities=18% Similarity=0.176 Sum_probs=321.0
Q ss_pred ccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCC
Q 045487 229 QFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFP 308 (729)
Q Consensus 229 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 308 (729)
...+..+..++++++|++|++++|.+.+. | .++.+++|++|++++|.+++ +| +..++. |++|++++|.+.+ ++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~-L~~L~Ls~N~l~~-~~ 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTN-LTYLACDSNKLTN-LD 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTT-CSEEECCSSCCSC-CC
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCC-CCEEECcCCCCce-ee
Confidence 34445566788999999999999999865 4 68999999999999999985 44 666777 9999999999985 44
Q ss_pred chhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCC
Q 045487 309 DDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLR 388 (729)
Q Consensus 309 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 388 (729)
+..+++|++|++++|.+.+. + +..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..++
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred ---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCC
Confidence 55688899999999999874 3 88899999999999999864 3788999999999999766565 477899
Q ss_pred CccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEE
Q 045487 389 NLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALE 468 (729)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 468 (729)
+|++|++++|.+.+. + +..+++|+.|++++|.+.+. .+..+++|++|++++|++++ +| +..+++|+.|+
T Consensus 171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 999999999999884 3 78899999999999998754 25558999999999999997 45 77899999999
Q ss_pred ccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEec
Q 045487 469 LGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYM 548 (729)
Q Consensus 469 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 548 (729)
+++|.+++.. +..+++|+.++++.+ +|+.+++++|.+.+.+|. ..+ ++|+.|++
T Consensus 240 l~~N~l~~~~---~~~l~~L~~L~l~~n--------------------~L~~L~l~~n~~~~~~~~--~~l-~~L~~L~L 293 (457)
T 3bz5_A 240 CSVNPLTELD---VSTLSKLTTLHCIQT--------------------DLLEIDLTHNTQLIYFQA--EGC-RKIKELDV 293 (457)
T ss_dssp CCSSCCSCCC---CTTCTTCCEEECTTC--------------------CCSCCCCTTCTTCCEEEC--TTC-TTCCCCCC
T ss_pred eeCCcCCCcC---HHHCCCCCEEeccCC--------------------CCCEEECCCCccCCcccc--ccc-ccCCEEEC
Confidence 9999998753 567888999988765 355677888877766652 233 38999999
Q ss_pred ccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccc
Q 045487 549 YKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGS 628 (729)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 628 (729)
++|...+.+|. ..++|+.|++++| ++|++|++++|++++. .++.+++|+.|++++|++++
T Consensus 294 s~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~- 353 (457)
T 3bz5_A 294 THNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD- 353 (457)
T ss_dssp TTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB-
T ss_pred CCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC-
Confidence 99988877764 3455666655544 6899999999999974 38889999999999999985
Q ss_pred cChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCC-CCCCEEeCCCCccccccc--ccc
Q 045487 629 IPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNL-KAVVNIDLSWNRLSGNIP--STI 705 (729)
Q Consensus 629 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~ls~n~~~~~~p--~~l 705 (729)
+++|+.|++++|.+.+. ..+.+|..+++++|+++|.+|..+... .+........+....... -.+
T Consensus 354 -------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~ 421 (457)
T 3bz5_A 354 -------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITW 421 (457)
T ss_dssp -------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSSEEEETTTTEEEE
T ss_pred -------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCCccccCCCCeeEE
Confidence 24677778999999876 356778999999999999999776433 344444444333221110 012
Q ss_pred ccCC-----CCCeeeccCCccccCCCCC
Q 045487 706 VGLK-----NLQRLSLKHNKLQGPIPES 728 (729)
Q Consensus 706 ~~l~-----~L~~l~l~~n~l~~~~p~~ 728 (729)
.+++ -+......+|.++|.|++.
T Consensus 422 k~~~~~~~~~~y~~~~~~~~fsG~i~~p 449 (457)
T 3bz5_A 422 ENLSTDNPAVTYTFTSENGAIVGTVTTP 449 (457)
T ss_dssp SSCCTTSCEECEEEECTTSSEEEEEEEE
T ss_pred EeccCCCceEEEEEecCCcEEeeEeccc
Confidence 2221 2333444578888887653
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=296.85 Aligned_cols=320 Identities=21% Similarity=0.231 Sum_probs=183.6
Q ss_pred cEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccc
Q 045487 319 KGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQS 398 (729)
Q Consensus 319 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 398 (729)
+.++.+++.++ .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666665555 333333 345666666666666555556666666666666666666555666666666666666666
Q ss_pred cceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceecc
Q 045487 399 NLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLI 478 (729)
Q Consensus 399 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 478 (729)
.+....+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHc--cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 6555444445555556666665555544333222 22455555555555554444444444444444444444444333
Q ss_pred CccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCC
Q 045487 479 PEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIP 558 (729)
Q Consensus 479 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 558 (729)
+..+ ..+++|+.|++++|.+.+..+..+.... +|+.|++++|...+.+|
T Consensus 169 ~~~l------------------------------~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 169 TEAL------------------------------SHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMT 217 (477)
T ss_dssp HHHH------------------------------TTCTTCCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCTTCCEEC
T ss_pred hhHh------------------------------cccCCCcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCccccccC
Confidence 3334 4445555555555554444333333333 55555555555544444
Q ss_pred ccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCC
Q 045487 559 KEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNS 638 (729)
Q Consensus 559 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 638 (729)
.......+|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..|..+++
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 44444456666777766666433345666666777777777666665556666666777777777766666666666677
Q ss_pred CCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCc
Q 045487 639 LRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 639 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 674 (729)
|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 777777777766666666666666777777777665
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=298.09 Aligned_cols=322 Identities=19% Similarity=0.198 Sum_probs=237.3
Q ss_pred CEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCc
Q 045487 343 STVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNN 422 (729)
Q Consensus 343 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 422 (729)
+.++.+++.++ .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..|.++++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46777777666 455444 357788888888877666777777788888888877777777777777777777777777
Q ss_pred cCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCc
Q 045487 423 TFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSST 502 (729)
Q Consensus 423 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 502 (729)
.+.+..+. .+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 91 ~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------- 145 (477)
T 2id5_A 91 RLKLIPLG--VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH----------------------- 145 (477)
T ss_dssp CCCSCCTT--SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-----------------------
T ss_pred cCCccCcc--cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-----------------------
Confidence 66533221 12335666666666665555444444445555555555544443333
Q ss_pred chhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCC
Q 045487 503 SELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLP 582 (729)
Q Consensus 503 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 582 (729)
..+..+++|++|++++|.+.+..+..+.... +|+.|++++|.+.+..+..+..+++|++|++++|+..+.++
T Consensus 146 -------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 146 -------RAFSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp -------TSSTTCTTCCEEEEESCCCSSCCHHHHTTCT-TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred -------hhccCCCCCCEEECCCCcCcccChhHhcccC-CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 3455566777777777766654444555555 89999999998888777788889999999999988877776
Q ss_pred ccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCC
Q 045487 583 MTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLED 662 (729)
Q Consensus 583 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 662 (729)
.......+|+.|++++|.++...+..+..+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..|..+++
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 66656668999999999988655567888899999999999998777788888899999999999999888889999999
Q ss_pred CCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccc
Q 045487 663 ILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGN 700 (729)
Q Consensus 663 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~ 700 (729)
|+.|+|++|++++..+..+..+++|+.|++++|++...
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 99999999999877667788889999999999988743
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-32 Score=287.19 Aligned_cols=348 Identities=17% Similarity=0.148 Sum_probs=215.8
Q ss_pred CCCCCCCCCCc-cceeEeeCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccC
Q 045487 51 QNWTSNTSVCS-WMGITCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRY 129 (729)
Q Consensus 51 ~~w~~~~~~c~-w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~ 129 (729)
.+|..+.+||. |.+..|.....++ ............-..++++++|+++++.+....+..+..+++|++|++++
T Consensus 4 ~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~ 78 (390)
T 3o6n_A 4 KPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78 (390)
T ss_dssp ---CCEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT
T ss_pred CCCCCccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCC
Confidence 56877777765 4444443211122 21111111112223568999999999998865555678999999999999
Q ss_pred CcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCC
Q 045487 130 NKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP 209 (729)
Q Consensus 130 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 209 (729)
|.+.+..+..|+++++|++|++++|.+++..|..+.++ ++|++|++++|.++..
T Consensus 79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------------------------~~L~~L~L~~n~l~~l 132 (390)
T 3o6n_A 79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV--------------------------PLLTVLVLERNDLSSL 132 (390)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------------------------TTCCEEECCSSCCCCC
T ss_pred CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC--------------------------CCCCEEECCCCccCcC
Confidence 99997777789999999999999999885555555555 7777888887777743
Q ss_pred CCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhhhhh
Q 045487 210 IPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNL 289 (729)
Q Consensus 210 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 289 (729)
.+..+..+++|++|++++|.+.+..+..++++++|++|++++|.+++. .+..+++|++|++++|.+.+ ++ ..
T Consensus 133 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-~~----~~ 204 (390)
T 3o6n_A 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-LA----IP 204 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-EE----CC
T ss_pred CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-cC----CC
Confidence 334457777888888888877766666777788888888888777654 25566777788887776652 11 11
Q ss_pred ccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEE
Q 045487 290 SSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSL 369 (729)
Q Consensus 290 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L 369 (729)
. .|++|++++|.+. .+|.. ..++|+.|++++|.+.+. .++..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 205 ~-~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 205 I-AVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp S-SCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred C-cceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 2 2777777777665 22322 134566666666666543 355566666666666666665556666666666666
Q ss_pred EeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCc
Q 045487 370 HLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNN 449 (729)
Q Consensus 370 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~ 449 (729)
++++|.+.+ ++..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+... + ...+++|+.|++++|+
T Consensus 278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C----CCTTCCCSEEECCSSC
T ss_pred ECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C----chhhccCCEEEcCCCC
Confidence 666666553 34444555666666666665543 333445555666666666555421 1 2224455555555554
Q ss_pred Cc
Q 045487 450 FS 451 (729)
Q Consensus 450 ~~ 451 (729)
+.
T Consensus 351 ~~ 352 (390)
T 3o6n_A 351 WD 352 (390)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.2e-31 Score=273.58 Aligned_cols=306 Identities=22% Similarity=0.335 Sum_probs=185.6
Q ss_pred CCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcE
Q 045487 337 WHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKI 416 (729)
Q Consensus 337 ~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 416 (729)
..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+... ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 346667777777776653 33 356666777777777666533 22 55666666666666655542 23555555555
Q ss_pred EECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCC
Q 045487 417 LSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRN 496 (729)
Q Consensus 417 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 496 (729)
|++++|.+.+. +. +..+++|+.|++++|... ...+ .+..+++|+.|++++|
T Consensus 115 L~l~~n~i~~~-~~---~~~l~~L~~L~l~~n~~~------------------------~~~~-~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 115 LYLNEDNISDI-SP---LANLTKMYSLNLGANHNL------------------------SDLS-PLSNMTGLNYLTVTES 165 (347)
T ss_dssp EECTTSCCCCC-GG---GTTCTTCCEEECTTCTTC------------------------CCCG-GGTTCTTCCEEECCSS
T ss_pred EECcCCcccCc-hh---hccCCceeEEECCCCCCc------------------------cccc-chhhCCCCcEEEecCC
Confidence 55555554421 11 223444444444444322 2221 2445555555555555
Q ss_pred cccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCc
Q 045487 497 YLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNN 576 (729)
Q Consensus 497 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 576 (729)
.+... ..+..+++|+++++++|.+.+. +. +..+++|+.|++++|.
T Consensus 166 ~~~~~--------~~~~~l~~L~~L~l~~n~l~~~--------------------------~~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 166 KVKDV--------TPIANLTDLYSLSLNYNQIEDI--------------------------SP-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CCCCC--------GGGGGCTTCSEEECTTSCCCCC--------------------------GG-GGGCTTCCEEECCSSC
T ss_pred CcCCc--------hhhccCCCCCEEEccCCccccc--------------------------cc-ccCCCccceeecccCC
Confidence 55443 2244555566666655544321 11 4455667777777776
Q ss_pred ccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChh
Q 045487 577 LSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPST 656 (729)
Q Consensus 577 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 656 (729)
+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..
T Consensus 211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~ 282 (347)
T 4fmz_A 211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SV 282 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hh
Confidence 664332 6667777777777777764433 66777777777777777643 3566777777777777777764 45
Q ss_pred hhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccc
Q 045487 657 FWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 657 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~ 722 (729)
+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 7777778888888887777777777777788888888888776555 667788888888888764
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-31 Score=296.79 Aligned_cols=346 Identities=16% Similarity=0.141 Sum_probs=233.7
Q ss_pred CCCCCCCCCCc----cceeEeeCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceee
Q 045487 51 QNWTSNTSVCS----WMGITCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELR 126 (729)
Q Consensus 51 ~~w~~~~~~c~----w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~ 126 (729)
..|..+.+||. |.++.|+ .+ ++.........+ .-..+.+++.++++++.+....+..+..+++|++|+
T Consensus 10 ~~~~~~~~C~~~~~~~~c~~~~---~~---i~~~~~~~~~~~--~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~ 81 (597)
T 3oja_B 10 KPRQPEYKCIDSNLQYDCVFYD---VH---IDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81 (597)
T ss_dssp -CCCSEECCCCC--CCSEEECS---CE---ECSSCCCCEESC--SSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEE
T ss_pred cCCCCCCcCcccCcCceeEecC---ce---ecccccccccCc--ccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEE
Confidence 67888777774 6555543 11 121111111111 123467899999999998876666788999999999
Q ss_pred ccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCC
Q 045487 127 LRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQF 206 (729)
Q Consensus 127 L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 206 (729)
+++|.+.+..|..|+++++|++|++++|.+++..|..++++ ++|++|++++|.+
T Consensus 82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------------------------~~L~~L~L~~n~l 135 (597)
T 3oja_B 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV--------------------------PLLTVLVLERNDL 135 (597)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------------------------TTCCEEECCSSCC
T ss_pred CCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC--------------------------CCCCEEEeeCCCC
Confidence 99999997777899999999999999999885555555555 7788888888877
Q ss_pred cCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhh
Q 045487 207 KGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASI 286 (729)
Q Consensus 207 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 286 (729)
++..+..++.+++|++|++++|.+.+..|..++++++|++|++++|.+++.. ++.+++|+.|++++|.+.+. +
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-~--- 208 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-A--- 208 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-E---
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-c---
Confidence 7544445677888888888888887777777788888888888888776542 55667788888887776631 1
Q ss_pred hhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCC
Q 045487 287 FNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKL 366 (729)
Q Consensus 287 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L 366 (729)
... .|+.|++++|.+. .++... .++|+.|++++|.+.+ +.++..+++|+.|++++|.+.+..|..+..+++|
T Consensus 209 -~~~-~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 209 -IPI-AVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp -CCT-TCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred -CCc-hhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 112 2777777777765 232221 2457777777777664 2556667777777777777776666667777777
Q ss_pred cEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECC
Q 045487 367 KSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLG 446 (729)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~ 446 (729)
+.|++++|.+.+ +|..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+.+. + ...+++|+.|+++
T Consensus 281 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~----~~~~~~L~~L~l~ 353 (597)
T 3oja_B 281 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K----LSTHHTLKNLTLS 353 (597)
T ss_dssp CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C----CCTTCCCSEEECC
T ss_pred CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C----hhhcCCCCEEEee
Confidence 777777776664 45555566677777777776653 445556666777777777666532 1 2235666666666
Q ss_pred CCcCcc
Q 045487 447 LNNFSG 452 (729)
Q Consensus 447 ~~~~~~ 452 (729)
+|++.+
T Consensus 354 ~N~~~~ 359 (597)
T 3oja_B 354 HNDWDC 359 (597)
T ss_dssp SSCEEH
T ss_pred CCCCCC
Confidence 665543
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=1.4e-30 Score=274.03 Aligned_cols=331 Identities=20% Similarity=0.201 Sum_probs=214.3
Q ss_pred CCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEE
Q 045487 339 CKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILS 418 (729)
Q Consensus 339 ~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 418 (729)
+++++.++++++.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666777776666644334456666666776666666655555666666666666666666665555566666666666
Q ss_pred CcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcc
Q 045487 419 LFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYL 498 (729)
Q Consensus 419 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l 498 (729)
+++|.+.. +|.. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++. .+..
T Consensus 124 L~~n~l~~-l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~-------------- 184 (390)
T 3o6n_A 124 LERNDLSS-LPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL-------------- 184 (390)
T ss_dssp CCSSCCCC-CCTT-TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGG--------------
T ss_pred CCCCccCc-CCHH-HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccc--------------
Confidence 66666552 2211 122355555555555555544444444455555555555544432 1233
Q ss_pred cCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCccc
Q 045487 499 TSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLS 578 (729)
Q Consensus 499 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (729)
+++|+.+++++|.+.+. ..+.++++|++++|.+... |. ...++|+.|++++|.++
T Consensus 185 ----------------l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 185 ----------------IPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp ----------------CTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCC
T ss_pred ----------------ccccceeeccccccccc------CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCc
Confidence 44555555555544321 1112556666666655443 22 23468899999999988
Q ss_pred ccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhh
Q 045487 579 GSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFW 658 (729)
Q Consensus 579 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 658 (729)
+. ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|++++|++++ +|..+.
T Consensus 240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~ 315 (390)
T 3o6n_A 240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQP 315 (390)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHH
T ss_pred cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCcccc
Confidence 53 467888999999999999988888888899999999999999884 55566778999999999999884 677788
Q ss_pred ccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccc
Q 045487 659 NLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 659 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~ 722 (729)
.+++|+.|++++|++++. + +..+++|+.|++++|++....... -+..++...+.++...
T Consensus 316 ~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~--~~~~~~~~~~~~~~~~ 374 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA--LFRNVARPAVDDADQH 374 (390)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH--HTTTCCTTTBCCCCSC
T ss_pred ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHH--HHHHHHhhcccccCce
Confidence 889999999999998744 3 677889999999999998643322 2233444444454433
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.7e-30 Score=266.52 Aligned_cols=305 Identities=23% Similarity=0.348 Sum_probs=202.5
Q ss_pred cCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEE
Q 045487 314 GLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEIL 393 (729)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 393 (729)
.+++|+.|+++++.+... ..+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ ++ .+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEE
Confidence 467899999999998754 3488899999999999999854 33 8899999999999998875 33 68999999999
Q ss_pred EcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCc
Q 045487 394 GIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNS 473 (729)
Q Consensus 394 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 473 (729)
++++|.+.+..+ +..+++|+.|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 999999887543 88999999999999976544433 4457788888888877654322 4445555555555554
Q ss_pred ceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcc
Q 045487 474 FSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNI 553 (729)
Q Consensus 474 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 553 (729)
+. .. ..+..+++|+.+++++|.+.+..+
T Consensus 189 l~------------------------~~--------~~~~~l~~L~~L~l~~n~l~~~~~-------------------- 216 (347)
T 4fmz_A 189 IE------------------------DI--------SPLASLTSLHYFTAYVNQITDITP-------------------- 216 (347)
T ss_dssp CC------------------------CC--------GGGGGCTTCCEEECCSSCCCCCGG--------------------
T ss_pred cc------------------------cc--------ccccCCCccceeecccCCCCCCch--------------------
Confidence 44 33 224444555555555554432110
Q ss_pred cccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhh
Q 045487 554 HGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCL 633 (729)
Q Consensus 554 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 633 (729)
+..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+
T Consensus 217 -------~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 217 -------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp -------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred -------hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence 3344455555555555553222 55556666666666665542 3455666666666666666643 245
Q ss_pred cCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccc
Q 045487 634 GDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 634 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~ 698 (729)
..+++|++|++++|.+++..+..+..+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 666666777777666666666666666677777777777665444 566667777777777664
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1e-30 Score=290.05 Aligned_cols=312 Identities=20% Similarity=0.182 Sum_probs=206.8
Q ss_pred CCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEE
Q 045487 339 CKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILS 418 (729)
Q Consensus 339 ~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 418 (729)
+.+++.++++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34566666666666544444455566666666666666655555566666666666666666555555555566666666
Q ss_pred CcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcc
Q 045487 419 LFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYL 498 (729)
Q Consensus 419 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l 498 (729)
+++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|+.|+ +++|.+
T Consensus 130 L~~n~l~~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~------------------------L~~N~l 183 (597)
T 3oja_B 130 LERNDLSSLPRGI--FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ------------------------LSSNRL 183 (597)
T ss_dssp CCSSCCCCCCTTT--TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE------------------------CTTSCC
T ss_pred eeCCCCCCCCHHH--hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE------------------------CcCCCC
Confidence 6665554222211 12245555555555555544444444444444444 444444
Q ss_pred cCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCccc
Q 045487 499 TSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLS 578 (729)
Q Consensus 499 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (729)
+.. .+..+++|+.+++++|.+.+. ..+.+++.|++++|.+....+. ..++|+.|++++|.++
T Consensus 184 ~~~---------~~~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 184 THV---------DLSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLT 245 (597)
T ss_dssp SBC---------CGGGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCC
T ss_pred CCc---------ChhhhhhhhhhhcccCccccc------cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCC
Confidence 432 123345555555555544321 1112566666666655433222 2358999999999998
Q ss_pred ccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhh
Q 045487 579 GSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFW 658 (729)
Q Consensus 579 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 658 (729)
+ +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++ +|..+..+++|++|++++|.+++ +|..+.
T Consensus 246 ~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~ 321 (597)
T 3oja_B 246 D--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQP 321 (597)
T ss_dssp C--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHH
T ss_pred C--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccc
Confidence 5 3678889999999999999998889999999999999999999985 56667778999999999999984 778888
Q ss_pred ccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccccc
Q 045487 659 NLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNI 701 (729)
Q Consensus 659 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~ 701 (729)
.+++|+.|++++|.+++. | +..+++|+.|++++|++.+..
T Consensus 322 ~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 999999999999999854 3 677889999999999998653
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.4e-31 Score=273.01 Aligned_cols=280 Identities=18% Similarity=0.261 Sum_probs=224.0
Q ss_pred cCCHHHHHHHHHHHhhccCCCCCCcccCCC----CCCCCCCccceeEeeC--------CCCcEEEEEcCCCCCccccCCC
Q 045487 24 ANISRDQDALLSVKAHIINDNPRNILAQNW----TSNTSVCSWMGITCDI--------YGNRVTSLTIPDLGLTGTIPSY 91 (729)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~~~ 91 (729)
++..+|++||++||+++. .+|.+.. ..| ....++|.|.|+.|+. ...+|+.|+++++.+. .+|+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~-~~~~~~~-~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYN-ADRNRWH-SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp CCCCCHHHHHHHHHHHHH-HCCTTHH-HHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccCchHHHHHHHHHHhcc-CCchhhh-hhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 345678999999999985 4565555 678 4567899999999952 3478999999999987 78888
Q ss_pred CCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCcccccccccc
Q 045487 92 LGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSIS 171 (729)
Q Consensus 92 l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll 171 (729)
++++++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..|+++++|++|++++|.+.+.+|..++..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---- 173 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---- 173 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE----
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc----
Confidence 888999999999999988 88888999999999999999998 889899999999999999988888888777652
Q ss_pred ccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEccc
Q 045487 172 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGF 251 (729)
Q Consensus 172 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 251 (729)
.++ ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..++++++|++|++++
T Consensus 174 ------------~~~-~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 174 ------------DAS-GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ------------C-C-CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred ------------cch-hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence 011 11233478888888888887 777778888888888888888874 566688888888888888
Q ss_pred CcCcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccC
Q 045487 252 NNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFK 329 (729)
Q Consensus 252 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 329 (729)
|.+.+.+|..++++++|++|++++|.+.+.+|..+..+++ |++|++++|.+.+.+|..+. .+++++.+++..+.+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~-L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ-LEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT-CCEEECTTCTTCCCCCGGGG-GSCTTCEEECCGGGSC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC-CCEEeCCCCCchhhccHHHh-hccCceEEeCCHHHHH
Confidence 8888888888888888888888888888788888777777 88888888888878887654 4566888888776544
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.3e-31 Score=267.27 Aligned_cols=252 Identities=25% Similarity=0.423 Sum_probs=194.3
Q ss_pred CCCcEEECCCCcCcc--cCCcchhcCCCCcEEEccC-CcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhcc
Q 045487 438 PNLELLNLGLNNFSG--SIPSFCFNASKLYALELGY-NSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVN 514 (729)
Q Consensus 438 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~ 514 (729)
.+++.|++++|.+.+ .+|..+.++++|+.|++++ |.+.+..|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~---------------------------- 101 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT---------------------------- 101 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT----------------------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC----------------------------
Confidence 456666666666665 5555666666666666663 555555554444444
Q ss_pred CCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccc-cCce
Q 045487 515 CKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLK-KLQG 593 (729)
Q Consensus 515 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~ 593 (729)
+|++|++++|.+.+.+|..+.... +|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ +|++
T Consensus 102 --~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 102 --QLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp --TCSEEEEEEECCEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred --CCCEEECcCCeeCCcCCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 455555555555444555554444 566666666666666777778888899999999998888888888887 8999
Q ss_pred EecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcC
Q 045487 594 LYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSL 673 (729)
Q Consensus 594 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 673 (729)
|++++|++++..|..+..++ |++|++++|++++..|..+..+++|++|++++|.+++..|. +..+++|++|++++|++
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence 99999999888888888887 99999999999988888888999999999999999876655 77889999999999999
Q ss_pred cccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCc-ccc
Q 045487 674 NGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNK-LQG 723 (729)
Q Consensus 674 ~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~-l~~ 723 (729)
++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9889999999999999999999999998886 888999999999998 555
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.2e-33 Score=299.59 Aligned_cols=360 Identities=19% Similarity=0.209 Sum_probs=166.9
Q ss_pred cceEEcccCcccccCCchhhccCCCCcEEEccccccCC----CCCCCCCCCCCCCEEEccccccccccCcCc-cCCC---
Q 045487 293 LTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKG----PIPNNLWHCKDLSTVSLSFNQFTGRIPRDL-GNST--- 364 (729)
Q Consensus 293 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~-~~l~--- 364 (729)
+++|+++++.+.+......+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 67777777766543333334445556666666665542 122334444555555555555443222111 1122
Q ss_pred -CCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccc---cCCCCCC
Q 045487 365 -KLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKN---LIGLPNL 440 (729)
Q Consensus 365 -~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~~~~~L 440 (729)
+|++|++++|.+..... ..++..+..+++|++|++++|.+.+..+.... ....++|
T Consensus 85 ~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 144 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144 (461)
T ss_dssp CCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcc
Confidence 34455554444432100 12233344444444455444444321111000 1113355
Q ss_pred cEEECCCCcCccc----CCcchhcCCCCcEEEccCCcceeccCcccc-----ccCCCcEEeccCCcccCCcchhhhhhhh
Q 045487 441 ELLNLGLNNFSGS----IPSFCFNASKLYALELGYNSFSGLIPEALG-----NLRNLKRLGLRRNYLTSSTSELMSFFSA 511 (729)
Q Consensus 441 ~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 511 (729)
++|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+. ..++|+.|++++|.++.... ..+...
T Consensus 145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~ 222 (461)
T 1z7x_W 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDLCGI 222 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHHHHH
T ss_pred eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH--HHHHHH
Confidence 6666666655542 233444556666666666665543332222 24567777777776665321 123355
Q ss_pred hccCCCCcEEEccCCcccccCCcchh----cCccccceEecccCccccc----CCccccCCCCccEEEccCCcccccCCc
Q 045487 512 LVNCKSLKVIVLSENPLDGVLPSSIG----NHSVSVEEIYMYKCNIHGR----IPKEIGSLINLTTLGLGDNNLSGSLPM 583 (729)
Q Consensus 512 l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~ 583 (729)
+..+++|++|++++|.+.+.....+. ...+++++|++++|.+... ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 56667777777777765543211111 1112444444444444332 333344455555555555555432222
Q ss_pred cccc-----cccCceEecCCCccccc----CChhccCCCCCCEEECcCCccccccChhhcC-----CCCCCEEECcCCcC
Q 045487 584 TLGR-----LKKLQGLYLQNNKFEGP----IPQEFCHFSRLYEVDMNGNKLSGSIPSCLGD-----LNSLRILSLSSNEL 649 (729)
Q Consensus 584 ~l~~-----l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-----l~~L~~L~l~~n~l 649 (729)
.+.. .++|++|++++|.+++. ++..+..+++|++|++++|++.+..+..+.. .++|++|++++|.+
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 2211 13555555555555433 2333344455555555555554433322221 34555555555555
Q ss_pred cc----CCChhhhccCCCCEEeCCCCcCc
Q 045487 650 TS----IIPSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 650 ~~----~~~~~~~~l~~L~~L~L~~n~l~ 674 (729)
++ .+|..+..+++|++|++++|+++
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 43 34444555555555555555554
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-28 Score=251.98 Aligned_cols=269 Identities=21% Similarity=0.210 Sum_probs=193.7
Q ss_pred CCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCC
Q 045487 438 PNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKS 517 (729)
Q Consensus 438 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~ 517 (729)
++++.|++++|.+++..+..+.++++|+.|++++|.+.+..|..+..+++|++|++++|+++..+.. + .++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-------~--~~~ 122 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-------M--PKT 122 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-------C--CTT
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-------h--ccc
Confidence 4555555555555544444455555555555555555555555555566666666666555543221 1 145
Q ss_pred CcEEEccCCcccccCCcchhcCccccceEecccCcccc--cCCccccCCCCccEEEccCCcccccCCccccccccCceEe
Q 045487 518 LKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHG--RIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLY 595 (729)
Q Consensus 518 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 595 (729)
|++|++++|.+.+..+..+.... +|+.|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|+
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELH 198 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEE
T ss_pred ccEEECCCCcccccCHhHhcCCc-cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEE
Confidence 66666666666554444444444 66666666666542 556678888999999999999884 555443 7899999
Q ss_pred cCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcc
Q 045487 596 LQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNG 675 (729)
Q Consensus 596 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 675 (729)
+++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|.++..+++|++|++++|++++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 9999999888888999999999999999999888888999999999999999998 578889999999999999999987
Q ss_pred cCCccCcC------CCCCCEEeCCCCcccc--ccccccccCCCCCeeeccCCc
Q 045487 676 SLPLEIGN------LKAVVNIDLSWNRLSG--NIPSTIVGLKNLQRLSLKHNK 720 (729)
Q Consensus 676 ~~~~~l~~------l~~L~~L~ls~n~~~~--~~p~~l~~l~~L~~l~l~~n~ 720 (729)
..+..+.. .+.++.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 66666643 4789999999999864 557888999999999999985
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.6e-32 Score=296.38 Aligned_cols=379 Identities=18% Similarity=0.164 Sum_probs=281.2
Q ss_pred CCCCCEEEccccccccccCc-CccCCCCCcEEEeeCccccc----cccccccCCCCccEEEcccccceeeCCcccc-CCC
Q 045487 339 CKDLSTVSLSFNQFTGRIPR-DLGNSTKLKSLHLGLNNLIG----EIPQEIGNLRNLEILGIDQSNLVGFVPDTIL-NIS 412 (729)
Q Consensus 339 ~~~L~~L~L~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~ 412 (729)
+++|++|+++++.++..... .+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35789999999998754333 36778999999999999875 3566778889999999999988765443332 344
Q ss_pred ----CCcEEECcCccCccc----CCCccccCCCCCCcEEECCCCcCcccCCcchh-----cCCCCcEEEccCCcceecc-
Q 045487 413 ----TLKILSLFNNTFSGN----LPSSKNLIGLPNLELLNLGLNNFSGSIPSFCF-----NASKLYALELGYNSFSGLI- 478 (729)
Q Consensus 413 ----~L~~L~l~~n~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~- 478 (729)
+|++|++++|.+... ++. .+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSS--TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHH--HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHH--HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 799999999988732 222 234588999999999998754333222 2467999999999987643
Q ss_pred ---CccccccCCCcEEeccCCcccCCcchhhhhhhhhc-cCCCCcEEEccCCccccc----CCcchhcCccccceEeccc
Q 045487 479 ---PEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALV-NCKSLKVIVLSENPLDGV----LPSSIGNHSVSVEEIYMYK 550 (729)
Q Consensus 479 ---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~ 550 (729)
+..+..+++|+.|++++|.+.+.... .+...+. ..++|++|++++|.+.+. ++..+...+ +|++|++++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~ 236 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVR--VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGS 236 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHH--HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCS
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHH--HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccC
Confidence 45667789999999999987654221 1222232 356899999999988764 345555555 899999999
Q ss_pred CcccccC-----CccccCCCCccEEEccCCccccc----CCccccccccCceEecCCCcccccCChhccC-----CCCCC
Q 045487 551 CNIHGRI-----PKEIGSLINLTTLGLGDNNLSGS----LPMTLGRLKKLQGLYLQNNKFEGPIPQEFCH-----FSRLY 616 (729)
Q Consensus 551 ~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~ 616 (729)
|.+.+.. +..+..+++|++|++++|++++. ++..+..+++|++|++++|.+++..+..+.. .++|+
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 9876532 22234578999999999998854 5666777899999999999987655444433 36899
Q ss_pred EEECcCCccccc----cChhhcCCCCCCEEECcCCcCccCCChhhhc-----cCCCCEEeCCCCcCcc----cCCccCcC
Q 045487 617 EVDMNGNKLSGS----IPSCLGDLNSLRILSLSSNELTSIIPSTFWN-----LEDILSFDFSSNSLNG----SLPLEIGN 683 (729)
Q Consensus 617 ~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~ 683 (729)
+|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 999999998865 4566778899999999999998776655543 6799999999999986 77888888
Q ss_pred CCCCCEEeCCCCccccccccccc-----cCCCCCeeeccCCccc
Q 045487 684 LKAVVNIDLSWNRLSGNIPSTIV-----GLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 684 l~~L~~L~ls~n~~~~~~p~~l~-----~l~~L~~l~l~~n~l~ 722 (729)
+++|++|++++|++++.....+. ....|+.|.+.++...
T Consensus 397 ~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 99999999999999876433332 1235777777666554
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1e-28 Score=253.49 Aligned_cols=288 Identities=22% Similarity=0.272 Sum_probs=220.2
Q ss_pred CCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEe
Q 045487 413 TLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLG 492 (729)
Q Consensus 413 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 492 (729)
+++.++++++.+. .+|... .++++.|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 4566666666654 334322 35677777777777666666677777777777777777766677777777777777
Q ss_pred ccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccc--cCCccccCCCCccEE
Q 045487 493 LRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHG--RIPKEIGSLINLTTL 570 (729)
Q Consensus 493 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L 570 (729)
+++|+++..+.. +. ++|++|++++|.+.+..+..+...+ +|+.|++++|.+.. ..+..+..+ +|++|
T Consensus 109 L~~n~l~~l~~~-------~~--~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 109 ISKNHLVEIPPN-------LP--SSLVELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp CCSSCCCSCCSS-------CC--TTCCEEECCSSCCCCCCSGGGSSCS-SCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCcCCccCcc-------cc--ccCCEEECCCCccCccCHhHhCCCc-cCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 777777654321 11 6778888888877755555555555 78888888887743 566667777 89999
Q ss_pred EccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCc
Q 045487 571 GLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELT 650 (729)
Q Consensus 571 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 650 (729)
++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.++
T Consensus 178 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 178 RISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp BCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 999999985 555543 78999999999999888788999999999999999999888888999999999999999998
Q ss_pred cCCChhhhccCCCCEEeCCCCcCcccCCccCcC------CCCCCEEeCCCCccc--cccccccccCCCCCeeeccCCc
Q 045487 651 SIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGN------LKAVVNIDLSWNRLS--GNIPSTIVGLKNLQRLSLKHNK 720 (729)
Q Consensus 651 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~ls~n~~~--~~~p~~l~~l~~L~~l~l~~n~ 720 (729)
.+|.++..+++|++|++++|++++..+..+.. .++|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 57888999999999999999999776666654 367999999999987 6678889999999999999985
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=6e-28 Score=247.74 Aligned_cols=288 Identities=20% Similarity=0.261 Sum_probs=167.9
Q ss_pred CCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECc
Q 045487 341 DLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLF 420 (729)
Q Consensus 341 ~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 420 (729)
+++.++++++.++ .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4667777777665 445443 2567777777777776666667777777777777777777767777777777777777
Q ss_pred CccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCccee--ccCccccccCCCcEEeccCCcc
Q 045487 421 NNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSG--LIPEALGNLRNLKRLGLRRNYL 498 (729)
Q Consensus 421 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~l 498 (729)
+|.+. .+|... .++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+
T Consensus 111 ~n~l~-~l~~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------- 166 (332)
T 2ft3_A 111 KNHLV-EIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP------------------- 166 (332)
T ss_dssp SSCCC-SCCSSC----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT-------------------
T ss_pred CCcCC-ccCccc----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc-------------------
Confidence 77765 333322 2566666666666554433444445555555555554431 222
Q ss_pred cCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCccc
Q 045487 499 TSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLS 578 (729)
Q Consensus 499 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (729)
..+..+ +|+++++++|.+.+ +|.. + .++|++|++++|.++
T Consensus 167 -----------~~~~~l-~L~~L~l~~n~l~~-l~~~-------------------------~--~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 167 -----------GAFDGL-KLNYLRISEAKLTG-IPKD-------------------------L--PETLNELHLDHNKIQ 206 (332)
T ss_dssp -----------TSSCSC-CCSCCBCCSSBCSS-CCSS-------------------------S--CSSCSCCBCCSSCCC
T ss_pred -----------ccccCC-ccCEEECcCCCCCc-cCcc-------------------------c--cCCCCEEECCCCcCC
Confidence 222233 45555555554442 2211 1 135555555666555
Q ss_pred ccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhh
Q 045487 579 GSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFW 658 (729)
Q Consensus 579 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 658 (729)
+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 544455555666666666666666555555666666666666666666 5555566666666666666666655555554
Q ss_pred cc------CCCCEEeCCCCcCc--ccCCccCcCCCCCCEEeCCCCc
Q 045487 659 NL------EDILSFDFSSNSLN--GSLPLEIGNLKAVVNIDLSWNR 696 (729)
Q Consensus 659 ~l------~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~ls~n~ 696 (729)
.. .+|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 32 45666777777665 4555666666777777776664
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1e-27 Score=245.92 Aligned_cols=249 Identities=23% Similarity=0.343 Sum_probs=146.0
Q ss_pred CCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccc
Q 045487 97 SLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDF 176 (729)
Q Consensus 97 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l 176 (729)
++++++++++.++ .+|..+. +.|++|++++|.+++..+..|+++++|++|++++|.+++..|..+.++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------- 99 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL--------- 99 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC---------
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC---------
Confidence 5777777777665 3444433 567777777777775555567777777777777777764445555444
Q ss_pred cccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcc
Q 045487 177 SNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIG 256 (729)
Q Consensus 177 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 256 (729)
++|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+..
T Consensus 100 -----------------~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 100 -----------------VKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp -----------------TTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred -----------------CCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 66777777777665 4444433 466666666666655555555566666666666655532
Q ss_pred --cCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCC
Q 045487 257 --EIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPN 334 (729)
Q Consensus 257 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 334 (729)
..+..+.++++|++|++++|.+. .+| .... ++|++|++++|.+.+..+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~-------------------------~~~~---~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNIT-TIP-------------------------QGLP---PSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCC-SCC-------------------------SSCC---TTCSEEECTTSCCCEECTG
T ss_pred cCcChhhccCCCCcCEEECCCCccc-cCC-------------------------cccc---ccCCEEECCCCcCCccCHH
Confidence 34444555555555555555444 222 2211 3355555555555544455
Q ss_pred CCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCcc
Q 045487 335 NLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDT 407 (729)
Q Consensus 335 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 407 (729)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|.++..+++|++|++++|.+.+..+..
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 5555666666666666666555555566666666666666655 45555556666666666666555544333
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.4e-29 Score=282.61 Aligned_cols=379 Identities=14% Similarity=0.067 Sum_probs=179.2
Q ss_pred CCCCCcEEEeecCcCccccChhhhhh-ccccceEEcccCc-ccccCCchhhccCCCCcEEEccccccCCCCCC----CCC
Q 045487 264 NLAELEMLVLTSNLLTGAIPASIFNL-SSMLTALDFTNNS-LTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPN----NLW 337 (729)
Q Consensus 264 ~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~ 337 (729)
.+++|++|++++|.+.+..+..+... +.+|++|++++|. +...........+++|++|++++|.+.+.... ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56667777777666655444444443 2226666666664 11111111223455666666666665543221 233
Q ss_pred CCCCCCEEEccccccc----cccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccce---eeCCccccC
Q 045487 338 HCKDLSTVSLSFNQFT----GRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLV---GFVPDTILN 410 (729)
Q Consensus 338 ~~~~L~~L~L~~~~l~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~ 410 (729)
.+++|++|++++|.++ +.++..+..+++|++|++++|.+.+ ++..+..+++|++|+++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4566666666666654 2233334456666666666666553 4455566666666666542211 112223444
Q ss_pred CCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCC-cchhcCCCCcEEEccCCcceeccCccccccCCCc
Q 045487 411 ISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIP-SFCFNASKLYALELGYNSFSGLIPEALGNLRNLK 489 (729)
Q Consensus 411 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 489 (729)
+++|+.++++++... .++... ..+++|++|++++|.+.+... ..+..+++|+.|+++++...+..+.....+++|+
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~--~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILF--PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGG--GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred cccccccCccccchh-HHHHHH--hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 555555555543211 122111 124455555555554332211 1233444555555542211122222223444444
Q ss_pred EEeccC-----------CcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCC
Q 045487 490 RLGLRR-----------NYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIP 558 (729)
Q Consensus 490 ~L~l~~-----------~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 558 (729)
.|++++ +.++.. .+......+++|++|+++.+ .+.+..+
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~L~l~~~-------------------------~l~~~~~ 395 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQR-----GLIALAQGCQELEYMAVYVS-------------------------DITNESL 395 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHH-----HHHHHHHHCTTCSEEEEEES-------------------------CCCHHHH
T ss_pred EEEeecCccccccccccCccCHH-----HHHHHHhhCccCeEEEeecC-------------------------CccHHHH
Confidence 444442 111111 00111223344444444333 3333322
Q ss_pred ccccC-CCCccEEEcc----CCccccc-----CCccccccccCceEecCCCc--ccccCChhcc-CCCCCCEEECcCCcc
Q 045487 559 KEIGS-LINLTTLGLG----DNNLSGS-----LPMTLGRLKKLQGLYLQNNK--FEGPIPQEFC-HFSRLYEVDMNGNKL 625 (729)
Q Consensus 559 ~~~~~-l~~L~~L~l~----~~~~~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~~ 625 (729)
..+.. +++|++|+++ .+.+++. ++..+.++++|+.|++++|. +++..+..+. .+++|++|++++|++
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l 475 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC
Confidence 22322 5556666664 3334321 22224556666666665443 4443333333 256666677766666
Q ss_pred ccc-cChhhcCCCCCCEEECcCCcCccCC-ChhhhccCCCCEEeCCCCcCccc
Q 045487 626 SGS-IPSCLGDLNSLRILSLSSNELTSII-PSTFWNLEDILSFDFSSNSLNGS 676 (729)
Q Consensus 626 ~~~-~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~ 676 (729)
++. ++..+..+++|++|++++|.+++.. +.....+++|++|++++|++++.
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 542 3334456666777777766665432 23334566667777777766544
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=247.32 Aligned_cols=287 Identities=20% Similarity=0.223 Sum_probs=193.8
Q ss_pred CCCCCCCCCccceeEeeCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCc
Q 045487 52 NWTSNTSVCSWMGITCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNK 131 (729)
Q Consensus 52 ~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~ 131 (729)
.|......|.|.++ |+...++ ++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 22 ~~~~~~~~C~~~~~-c~~~~~~----------l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CKGSSGS----------LN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-EECCSTT----------CS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-eeCCCCC----------cc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 34455677999987 7654333 33 4555444 489999999999997777789999999999999999
Q ss_pred CCCcCcccccCCCCCCEEEccCCcCCCCCCcc-ccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCC
Q 045487 132 LQGEIPEELGNLAELEVLVLNNNLLTGTIPAS-IFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPI 210 (729)
Q Consensus 132 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 210 (729)
+++..|..|+++++|++|++++|.++ .+|.. +.++ ++|++|++++|.+++..
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l--------------------------~~L~~L~L~~n~l~~l~ 140 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPL--------------------------SSLTFLNLLGNPYKTLG 140 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTC--------------------------TTCSEEECTTCCCSSSC
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCC--------------------------ccCCEEECCCCCCcccC
Confidence 99777888999999999999999988 34433 4444 77888888888777433
Q ss_pred C-ccccccCCCCeEecccc-ccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhhhh
Q 045487 211 P-NNLWHCKGLSSASLSFN-QFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFN 288 (729)
Q Consensus 211 ~-~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 288 (729)
+ ..+..+++|++|++++| .+.+..+..++++++|++|++++|.+.+..+..+.++++|++|++++|.+. .+|..+..
T Consensus 141 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~ 219 (353)
T 2z80_A 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD 219 (353)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHH
T ss_pred chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhh
Confidence 3 36777888888888887 355555667788888888888888888777888888888888888888775 55554443
Q ss_pred hccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEcccccccc----ccCcCccCCC
Q 045487 289 LSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTG----RIPRDLGNST 364 (729)
Q Consensus 289 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~----~~~~~~~~l~ 364 (729)
....|+.|++++|.+.+..+..+. .......++.++++++.+.+ .+|..+..++
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~----------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELS----------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC----------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred hcccccEEECCCCccccccccccc----------------------cccccchhhccccccccccCcchhhhHHHHhccc
Confidence 333377777777776633222110 01123345555555555443 2445556666
Q ss_pred CCcEEEeeCcccccccccc-ccCCCCccEEEcccccceee
Q 045487 365 KLKSLHLGLNNLIGEIPQE-IGNLRNLEILGIDQSNLVGF 403 (729)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~ 403 (729)
+|++|++++|++. .+|.. +..+++|++|++++|.+.+.
T Consensus 278 ~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 278 GLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 6666776666666 34433 46666677777766666554
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.6e-29 Score=282.03 Aligned_cols=376 Identities=14% Similarity=0.104 Sum_probs=149.5
Q ss_pred CCCCcEEEccccccCCCCCCCCCC-CC-CCCEEEccccc-ccc-ccCcCccCCCCCcEEEeeCcccccc----ccccccC
Q 045487 315 LPRLKGLYMSYNQFKGPIPNNLWH-CK-DLSTVSLSFNQ-FTG-RIPRDLGNSTKLKSLHLGLNNLIGE----IPQEIGN 386 (729)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~l~~-~~-~L~~L~L~~~~-l~~-~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~ 386 (729)
+++|++|++++|.+.+..+.++.. ++ +|++|++++|. +.. .++.....+++|++|++++|.+.+. ++.....
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 445555555555444332222222 12 25555555543 111 1111122345555555555544333 1222234
Q ss_pred CCCccEEEcccccce----eeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCc---ccCCcchh
Q 045487 387 LRNLEILGIDQSNLV----GFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFS---GSIPSFCF 459 (729)
Q Consensus 387 l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~ 459 (729)
+++|++|++++|.+. +.++..+..+++|+.|++++|.+.+ ++.. +..+++|++|+++..... ......+.
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF--FKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH--HHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH--HhhhhHHHhhcccccccccchHHHHHHhh
Confidence 455555555555443 1222223345555555555554432 1211 122455555555432211 11222333
Q ss_pred cCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcC
Q 045487 460 NASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNH 539 (729)
Q Consensus 460 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 539 (729)
.+++|+.++++++.. ...+..+..+++|++|++++|.++... +...+..+++|++|+++++ +.+.....+...
T Consensus 268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~-----~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~ 340 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETED-----HCTLIQKCPNLEVLETRNV-IGDRGLEVLAQY 340 (592)
T ss_dssp CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHH-----HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHH-----HHHHHHhCcCCCEEeccCc-cCHHHHHHHHHh
Confidence 444555555544321 223344444555555555555432210 1122344555555555522 211111111111
Q ss_pred ccccceEeccc----------Cc-cccc-CCccccCCCCccEEEccCCcccccCCccccc-cccCceEecC----CCccc
Q 045487 540 SVSVEEIYMYK----------CN-IHGR-IPKEIGSLINLTTLGLGDNNLSGSLPMTLGR-LKKLQGLYLQ----NNKFE 602 (729)
Q Consensus 540 ~~~L~~L~l~~----------~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~----~n~l~ 602 (729)
.++|++|++++ |. +.+. ++.....+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 12455555552 22 2111 1111233445555555444444333333322 4455555553 23333
Q ss_pred cc-----CChhccCCCCCCEEECcCCc--cccccChhh-cCCCCCCEEECcCCcCccC-CChhhhccCCCCEEeCCCCcC
Q 045487 603 GP-----IPQEFCHFSRLYEVDMNGNK--LSGSIPSCL-GDLNSLRILSLSSNELTSI-IPSTFWNLEDILSFDFSSNSL 673 (729)
Q Consensus 603 ~~-----~~~~~~~l~~L~~L~l~~n~--~~~~~~~~l-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l 673 (729)
+. ++..+..+++|++|++++|. +++..+..+ ..+++|++|++++|.+++. .+..+..+++|++|++++|++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 21 11223334455555554332 332222222 2244455555555554432 222334445555555555554
Q ss_pred ccc-CCccCcCCCCCCEEeCCCCccccc
Q 045487 674 NGS-LPLEIGNLKAVVNIDLSWNRLSGN 700 (729)
Q Consensus 674 ~~~-~~~~l~~l~~L~~L~ls~n~~~~~ 700 (729)
++. ++.....+++|++|++++|++++.
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 322 122223344555555555554443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.2e-26 Score=233.42 Aligned_cols=276 Identities=19% Similarity=0.227 Sum_probs=193.0
Q ss_pred cEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceec--cCccccccCCCcEEe
Q 045487 415 KILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGL--IPEALGNLRNLKRLG 492 (729)
Q Consensus 415 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~ 492 (729)
+.++.+++.+. .+|... .+++++|++++|.+....+..+.++++|+.|++++|.+... .+..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCC----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCC----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 45666666654 333321 45677777777776644444456666666666666665422 133444455555555
Q ss_pred ccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCC-ccccCCCCccEEE
Q 045487 493 LRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIP-KEIGSLINLTTLG 571 (729)
Q Consensus 493 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~ 571 (729)
+++|.+... +..+..+++|++|++ ++|.+.+..+ ..+..+++|++|+
T Consensus 85 Ls~n~i~~l-------~~~~~~l~~L~~L~l-------------------------~~n~l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 85 LSFNGVITM-------SSNFLGLEQLEHLDF-------------------------QHSNLKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp CCSCSEEEE-------EEEEETCTTCCEEEC-------------------------TTSEEESSTTTTTTTTCTTCCEEE
T ss_pred CCCCccccC-------hhhcCCCCCCCEEEC-------------------------CCCcccccccchhhhhccCCCEEE
Confidence 555554432 122334444444444 4444433322 3577788999999
Q ss_pred ccCCcccccCCccccccccCceEecCCCcccc-cCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCc
Q 045487 572 LGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEG-PIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELT 650 (729)
Q Consensus 572 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 650 (729)
+++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.++
T Consensus 133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp CTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 99999988888888889999999999999886 57788888999999999999999887888888999999999999998
Q ss_pred cCCChhhhccCCCCEEeCCCCcCcccCCccCcCCC-CCCEEeCCCCccccccc--cccccCCCCCeeeccCCccccCCCC
Q 045487 651 SIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLK-AVVNIDLSWNRLSGNIP--STIVGLKNLQRLSLKHNKLQGPIPE 727 (729)
Q Consensus 651 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ls~n~~~~~~p--~~l~~l~~L~~l~l~~n~l~~~~p~ 727 (729)
+..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++....+ ....-+...+.+.+..+.+.+..|.
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 88887888899999999999999988888888885 89999999999875422 1112234455666667777776664
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.6e-26 Score=235.71 Aligned_cols=203 Identities=20% Similarity=0.253 Sum_probs=143.3
Q ss_pred CCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCcccc--------
Q 045487 515 CKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLG-------- 586 (729)
Q Consensus 515 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-------- 586 (729)
+++|++|++++|.+. .+|..+..+. +|++|++++|.+. .+|..+..+++|++|++++|++.+.+|..+.
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 344444444444443 3344343333 4444444444444 4455556666666666666666555555443
Q ss_pred -ccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCE
Q 045487 587 -RLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILS 665 (729)
Q Consensus 587 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 665 (729)
++++|++|++++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 4788888888888887 667778888888888888888884 5556778888888888888888888888888888888
Q ss_pred EeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccc
Q 045487 666 FDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 666 L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~ 722 (729)
|++++|++.+.+|..+.++++|++|++++|++.+.+|.++.++++|+.+++..+.+.
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888888888888888888888888888888888888888888888776553
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.7e-26 Score=232.69 Aligned_cols=283 Identities=21% Similarity=0.260 Sum_probs=203.9
Q ss_pred cEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCccc--CCcchhcCCCCcEEE
Q 045487 391 EILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGS--IPSFCFNASKLYALE 468 (729)
Q Consensus 391 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ 468 (729)
+.++.+++.+.. +|..+ .+++++|++++|.+.. ++. ..+.++++|++|++++|.+... .+..+..+++|+.|+
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~-i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQS-LPH-GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCC-CCT-TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCc-cCH-hHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 456666666554 33333 3688888998888873 332 2234588889999988887643 355666788889999
Q ss_pred ccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEec
Q 045487 469 LGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYM 548 (729)
Q Consensus 469 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 548 (729)
+++|.+.+ .+..+..+++|++|++++|+++.... ...+..+++|++|++++|.+.
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~------------------- 139 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHTR------------------- 139 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-----TTTTTTCTTCCEEECTTSCCE-------------------
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCccccccc-----chhhhhccCCCEEECCCCcCC-------------------
Confidence 98888874 45567888889999998888776522 124555566666666655443
Q ss_pred ccCcccccCCccccCCCCccEEEccCCcccc-cCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCcccc
Q 045487 549 YKCNIHGRIPKEIGSLINLTTLGLGDNNLSG-SLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSG 627 (729)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 627 (729)
+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 140 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 140 ------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp ------ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred ------ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 3344556677888888888888876 467788888889999999988887778888888889999999998887
Q ss_pred ccChhhcCCCCCCEEECcCCcCccCCChhhhcc-CCCCEEeCCCCcCcccCCc-c-CcCCCCCCEEeCCCCccccccccc
Q 045487 628 SIPSCLGDLNSLRILSLSSNELTSIIPSTFWNL-EDILSFDFSSNSLNGSLPL-E-IGNLKAVVNIDLSWNRLSGNIPST 704 (729)
Q Consensus 628 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~-l~~l~~L~~L~ls~n~~~~~~p~~ 704 (729)
..+..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|++++..+. . ..-+...+.+....+.+....|..
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 777778888889999999998888888888887 4888999999888754221 1 112334555666777777777777
Q ss_pred cccCC
Q 045487 705 IVGLK 709 (729)
Q Consensus 705 l~~l~ 709 (729)
+.+.+
T Consensus 294 ~~g~~ 298 (306)
T 2z66_A 294 KQGMP 298 (306)
T ss_dssp GTTCB
T ss_pred hCCce
Confidence 66543
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=240.69 Aligned_cols=279 Identities=19% Similarity=0.195 Sum_probs=192.5
Q ss_pred CCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcE
Q 045487 411 ISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKR 490 (729)
Q Consensus 411 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 490 (729)
|+.....+.+++.+. .+|... .++|++|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|++
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCeEeeCCCCCcc-cccccc----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 344444566666655 334322 457777777777777655556777778888888888777776777777888888
Q ss_pred EeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCC-cchhcCccccceEecccCc-ccccCCccccCCCCcc
Q 045487 491 LGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLP-SSIGNHSVSVEEIYMYKCN-IHGRIPKEIGSLINLT 568 (729)
Q Consensus 491 L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~ 568 (729)
|++++|+++.... ..+..+++|++|++++|.+.+..+ ..+...+ +|++|++++|. +....+..+..+++|+
T Consensus 105 L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 105 LDLSYNYLSNLSS------SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT-KLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp EECCSSCCSSCCH------HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred EECCCCcCCcCCH------hHhCCCccCCEEECCCCCCcccCchhhhccCC-CCcEEECCCCccccccCHHHccCCCCCC
Confidence 8888887776522 346677888888888887764333 2344444 77777777774 4444456677888888
Q ss_pred EEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhh---cCCCCCCEEECc
Q 045487 569 TLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCL---GDLNSLRILSLS 645 (729)
Q Consensus 569 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~ 645 (729)
+|++++|++.+..|..+..+++|++|++++|.+.......+..+++|++|++++|++++..+..+ ...+.++.++++
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 88888888887777788888888888888888764433334457888888888888876554433 235667778888
Q ss_pred CCcCccC----CChhhhccCCCCEEeCCCCcCcccCCcc-CcCCCCCCEEeCCCCccccccc
Q 045487 646 SNELTSI----IPSTFWNLEDILSFDFSSNSLNGSLPLE-IGNLKAVVNIDLSWNRLSGNIP 702 (729)
Q Consensus 646 ~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~ls~n~~~~~~p 702 (729)
++.+.+. +|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 7777653 5666777788888888888887 45544 4777888888888888776544
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.5e-25 Score=236.45 Aligned_cols=246 Identities=21% Similarity=0.239 Sum_probs=128.6
Q ss_pred CcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCc
Q 045487 440 LELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLK 519 (729)
Q Consensus 440 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 519 (729)
...++..+..++ .+|..+. ++++.|++++|.+.+..+..|.++++|+.|++++|.+..... ..+..+++|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~------~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI------GAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG------GGGTTCSSCC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh------hhccCCccCC
Confidence 456666666655 3443332 567777777777777766777777777777777777665422 4556667777
Q ss_pred EEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCccccc-CCccccccccCceEecCC
Q 045487 520 VIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGS-LPMTLGRLKKLQGLYLQN 598 (729)
Q Consensus 520 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~ 598 (729)
+|++++|.+.+..+..+.... +|++|++++|.+....+..+..+++|++|++++|+..+. .+..+.++++|++|++++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred EEECCCCcCCeeCHhHhhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 777777766543333333333 455555555554444444444455555555554332222 222344445555555555
Q ss_pred CcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCC
Q 045487 599 NKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLP 678 (729)
Q Consensus 599 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 678 (729)
|.++. +| .+..+++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..+
T Consensus 195 n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 195 CNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp SCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred CcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 54442 22 23444445555555554444444444444445555555554444444444444445555555554444444
Q ss_pred ccCcCCCCCCEEeCCCCcc
Q 045487 679 LEIGNLKAVVNIDLSWNRL 697 (729)
Q Consensus 679 ~~l~~l~~L~~L~ls~n~~ 697 (729)
..+..+++|+.|+|++|++
T Consensus 273 ~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTSSCTTCCEEECCSSCE
T ss_pred hHhccccCCCEEEcCCCCc
Confidence 4444444444444444444
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=6.3e-27 Score=238.04 Aligned_cols=245 Identities=20% Similarity=0.167 Sum_probs=172.5
Q ss_pred CCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCC
Q 045487 437 LPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCK 516 (729)
Q Consensus 437 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~ 516 (729)
+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+ +..+++|++|++++|+++... ..+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----------~~~ 99 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----------VGP 99 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----------ECT
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----------CCC
Confidence 4455555555555554444445555555555555555544332 444444444444444443221 113
Q ss_pred CCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEec
Q 045487 517 SLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYL 596 (729)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (729)
++++|++++|.+.+..+. .+++|++|++++|++++..+..+..+++|++|++
T Consensus 100 -------------------------~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 100 -------------------------SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp -------------------------TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred -------------------------CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 555666666555543332 3567899999999998777778888899999999
Q ss_pred CCCcccccCChhcc-CCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcc
Q 045487 597 QNNKFEGPIPQEFC-HFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNG 675 (729)
Q Consensus 597 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 675 (729)
++|.+++..+..+. .+++|++|++++|++++. +. ...+++|++|++++|.+++. |..+..+++|+.|++++|+++
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~- 227 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV- 227 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-
Confidence 99999877666664 688999999999998855 32 23478999999999999875 445888999999999999998
Q ss_pred cCCccCcCCCCCCEEeCCCCccc-cccccccccCCCCCeeeccCC-ccccCCC
Q 045487 676 SLPLEIGNLKAVVNIDLSWNRLS-GNIPSTIVGLKNLQRLSLKHN-KLQGPIP 726 (729)
Q Consensus 676 ~~~~~l~~l~~L~~L~ls~n~~~-~~~p~~l~~l~~L~~l~l~~n-~l~~~~p 726 (729)
.+|..+..+++|+.|++++|++. +..|..+..+++|+.+++++| .+.|..|
T Consensus 228 ~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 57878888999999999999998 788888899999999998843 4455444
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4.4e-25 Score=236.49 Aligned_cols=247 Identities=22% Similarity=0.227 Sum_probs=135.9
Q ss_pred CcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCc
Q 045487 440 LELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLK 519 (729)
Q Consensus 440 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 519 (729)
...++.++..++. +|..+ .++++.|++++|.+.+..+..|.++++|+.|++++|+++... +..+..+++|+
T Consensus 56 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE------VGAFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCC
T ss_pred CcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC------hhhccCcccCC
Confidence 3456666655542 33322 256777777777777666666666777777777766665542 14455566666
Q ss_pred EEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCC
Q 045487 520 VIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNN 599 (729)
Q Consensus 520 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 599 (729)
+|++++|.+.+.. +..+..+++|++|++++|++.+..+..+..+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~~~-------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~ 181 (452)
T 3zyi_A 127 TLELFDNWLTVIP-------------------------SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181 (452)
T ss_dssp EEECCSSCCSBCC-------------------------TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred EEECCCCcCCccC-------------------------hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC
Confidence 6666666555333 333444555555555555555444444555555555555553
Q ss_pred -cccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCC
Q 045487 600 -KFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLP 678 (729)
Q Consensus 600 -~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 678 (729)
.+....+..+..+++|++|++++|++++. | .+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..|
T Consensus 182 ~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp TTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred CCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 22222222345555555555555555532 2 24455555555555555555555555555555555555555555555
Q ss_pred ccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccc
Q 045487 679 LEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 679 ~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~ 722 (729)
..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 55555555555555555555444455555555555555555543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=4.1e-25 Score=221.37 Aligned_cols=252 Identities=19% Similarity=0.260 Sum_probs=164.7
Q ss_pred cEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccc
Q 045487 465 YALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVE 544 (729)
Q Consensus 465 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 544 (729)
..++.+++.++.. |.. ..++++.|++++|.++.... ..+..+++|++|++++|.+.+..+..+...+ +|+
T Consensus 14 ~~~~c~~~~l~~i-p~~--~~~~l~~L~l~~n~i~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVG--IPAASQRIFLHGNRISHVPA------ASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLE 83 (285)
T ss_dssp CEEECCSSCCSSC-CTT--CCTTCSEEECTTSCCCEECT------TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCC
T ss_pred eEEEcCcCCcccC-CcC--CCCCceEEEeeCCcCCccCH------HHcccCCCCCEEECCCCccceeCHhhcCCcc-CCC
Confidence 5677777766533 322 24678888888887776522 4466777788888877777766666666555 677
Q ss_pred eEecccCc-ccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCC
Q 045487 545 EIYMYKCN-IHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGN 623 (729)
Q Consensus 545 ~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 623 (729)
+|++++|. +....|..+..+++|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 77777776 44444566667777777777777776655666667777777777777776555555666777777777777
Q ss_pred ccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccccccc
Q 045487 624 KLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPS 703 (729)
Q Consensus 624 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~ 703 (729)
++++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+.
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 77755555666677777777777777776677777777777777777777655555566677777777777776643322
Q ss_pred ccccCCCCCeeeccCCccccCCCC
Q 045487 704 TIVGLKNLQRLSLKHNKLQGPIPE 727 (729)
Q Consensus 704 ~l~~l~~L~~l~l~~n~l~~~~p~ 727 (729)
. .-...++.+..+++.+.+..|+
T Consensus 244 ~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 244 R-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp H-HHHHHHHHCCSEECCCBEEESG
T ss_pred H-HHHHHHHhcccccCccccCCch
Confidence 1 1123345555566666665554
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.8e-25 Score=224.00 Aligned_cols=268 Identities=19% Similarity=0.188 Sum_probs=191.4
Q ss_pred cEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEecc
Q 045487 415 KILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLR 494 (729)
Q Consensus 415 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 494 (729)
+.++.+++.+. .+|... .+++++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 45666666655 333211 4577777777777766555566666777777777776666556556666666666666
Q ss_pred CCc-ccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEcc
Q 045487 495 RNY-LTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLG 573 (729)
Q Consensus 495 ~~~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 573 (729)
+|+ +.... +..+..++ +|++|++++|.+.+..|..+..+++|++|+++
T Consensus 89 ~n~~l~~~~------~~~~~~l~-------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 89 DNAQLRSVD------PATFHGLG-------------------------RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp SCTTCCCCC------TTTTTTCT-------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCccccC------HHHhcCCc-------------------------CCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 654 44331 12334444 45555555555555555667788899999999
Q ss_pred CCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCC
Q 045487 574 DNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSII 653 (729)
Q Consensus 574 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 653 (729)
+|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 99998766677888999999999999998776667888999999999999999888889999999999999999999877
Q ss_pred ChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccccccccccc--CCCCCeeeccCC
Q 045487 654 PSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVG--LKNLQRLSLKHN 719 (729)
Q Consensus 654 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~--l~~L~~l~l~~n 719 (729)
+..+..+++|+.|++++|++....+.. .....++.+..+.+.+....|..+.. +..++..+++||
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 788999999999999999987543321 11234556667788888888887765 456666666666
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=9.4e-27 Score=236.19 Aligned_cols=203 Identities=20% Similarity=0.228 Sum_probs=163.9
Q ss_pred cCCCCcEEEccCCcccccCCcch--hcCccccceEecccCcccccCCccccCC-----CCccEEEccCCcccccCCcccc
Q 045487 514 NCKSLKVIVLSENPLDGVLPSSI--GNHSVSVEEIYMYKCNIHGRIPKEIGSL-----INLTTLGLGDNNLSGSLPMTLG 586 (729)
Q Consensus 514 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~ 586 (729)
.+++|++|++++|.+.+.+|..+ ...+ +|++|++++|.+.+. |..+..+ ++|++|++++|++.+..+..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGP-DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSC-CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCC-CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 45667777777777766666654 3333 777777777776665 5555555 8999999999999987778899
Q ss_pred ccccCceEecCCCccccc--CChhc--cCCCCCCEEECcCCccccc---cChhhcCCCCCCEEECcCCcCccCCC-hhhh
Q 045487 587 RLKKLQGLYLQNNKFEGP--IPQEF--CHFSRLYEVDMNGNKLSGS---IPSCLGDLNSLRILSLSSNELTSIIP-STFW 658 (729)
Q Consensus 587 ~l~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~ 658 (729)
.+++|++|++++|++.+. .+..+ ..+++|++|++++|++++. ....+..+++|++|++++|.+++..| ..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 999999999999998764 23344 7889999999999999832 22445678999999999999998775 5667
Q ss_pred ccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCcccc
Q 045487 659 NLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQG 723 (729)
Q Consensus 659 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~~ 723 (729)
.+++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7899999999999998 7887777 8999999999999966 66 8999999999999999987
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=7.7e-28 Score=268.64 Aligned_cols=394 Identities=13% Similarity=0.110 Sum_probs=165.6
Q ss_pred CCCCcEEEccccccCCCCCCCCC-CCCCCCEEEcccc-ccccc-cCcCccCCCCCcEEEeeCccccccccccc----cCC
Q 045487 315 LPRLKGLYMSYNQFKGPIPNNLW-HCKDLSTVSLSFN-QFTGR-IPRDLGNSTKLKSLHLGLNNLIGEIPQEI----GNL 387 (729)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~L~~~-~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l 387 (729)
+++|++|++++|.+.+..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+.+..+.++ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34455555555544433222222 3455555555555 22221 22222244555555555555443322222 234
Q ss_pred CCccEEEccccc--ceee-CCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcC-------cccCCcc
Q 045487 388 RNLEILGIDQSN--LVGF-VPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNF-------SGSIPSF 457 (729)
Q Consensus 388 ~~L~~L~l~~~~--~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~ 457 (729)
++|++|++++|. +... +......+++|+.|++++|...+.++... ..+++|+.|++..+.. .+ ++..
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEcccccccCccchhhHHH-HHHH
Confidence 455555555443 1100 01111234555555555542111111111 1244555555433321 11 1123
Q ss_pred hhcCCCCcEE-EccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcch
Q 045487 458 CFNASKLYAL-ELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSI 536 (729)
Q Consensus 458 ~~~~~~L~~L-~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 536 (729)
+.++++|+.+ .+.+... +.++..+..+++|+.|++++|.+++.. +...+..+++|++|++++| +.......+
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~-----l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYD-----LVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHH-----HHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHH-----HHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 3444555554 2222111 122333334556666666665533210 1122345556666666655 222111122
Q ss_pred hcCccccceEecccC---------cccccCCccc-cCCCCccEEEccCCcccccCCccc-cccccCceEecC--C----C
Q 045487 537 GNHSVSVEEIYMYKC---------NIHGRIPKEI-GSLINLTTLGLGDNNLSGSLPMTL-GRLKKLQGLYLQ--N----N 599 (729)
Q Consensus 537 ~~~~~~L~~L~l~~~---------~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~--~----n 599 (729)
....++|++|++.+| .+.+.....+ ..+++|++|.+..+.+++.....+ ..+++|+.|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 221225556655322 1211111111 234556666555555543333233 235556666665 2 2
Q ss_pred ccccc-----CChhccCCCCCCEEECcCCccccccChhhcC-CCCCCEEECcCCcCccCCChhh-hccCCCCEEeCCCCc
Q 045487 600 KFEGP-----IPQEFCHFSRLYEVDMNGNKLSGSIPSCLGD-LNSLRILSLSSNELTSIIPSTF-WNLEDILSFDFSSNS 672 (729)
Q Consensus 600 ~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~ 672 (729)
.+++. ++..+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|+
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 33311 111134455566666654 444333333333 5556666666665554433333 445566666666666
Q ss_pred CcccCCc-cCcCCCCCCEEeCCCCcccccccccc-ccCCCCCeeeccCC
Q 045487 673 LNGSLPL-EIGNLKAVVNIDLSWNRLSGNIPSTI-VGLKNLQRLSLKHN 719 (729)
Q Consensus 673 l~~~~~~-~l~~l~~L~~L~ls~n~~~~~~p~~l-~~l~~L~~l~l~~n 719 (729)
+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+
T Consensus 493 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 493 FGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 5433222 22335556666666666544433333 34455554444444
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.5e-26 Score=233.01 Aligned_cols=247 Identities=21% Similarity=0.252 Sum_probs=120.6
Q ss_pred CCCCEEeCCCccCcccCCccccCCCCCceeeccCCcC-CCcCccccc-------CCCCCCEEEccCCcCCCCCCccc--c
Q 045487 96 SSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKL-QGEIPEELG-------NLAELEVLVLNNNLLTGTIPASI--F 165 (729)
Q Consensus 96 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~-~~~~p~~~~-------~l~~L~~L~l~~~~~~~~~p~~l--~ 165 (729)
++|++|++++|.+ .+|..+... |++|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3455555555555 344433332 55555555555 223444443 45555555555555554444433 2
Q ss_pred ccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCcccccc-----CCCCeEeccccccCCCCCccccC
Q 045487 166 NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHC-----KGLSSASLSFNQFTGRLPRDLGN 240 (729)
Q Consensus 166 ~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~l~~ 240 (729)
.+ ++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+++
T Consensus 119 ~l--------------------------~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 119 TG--------------------------PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp CS--------------------------CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cC--------------------------CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 22 5566666666655544 5555444 56666666666665555555666
Q ss_pred CCCCCEEEcccCcCccc--CChhh--hCCCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCC
Q 045487 241 LTRLKSLYLGFNNLIGE--IPEEL--GNLAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLP 316 (729)
Q Consensus 241 l~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 316 (729)
+++|++|++++|.+.+. .+..+ .++++|++|++++|.+.+ ++ .++...+..++
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~----------------------~~~~~~~~~l~ 228 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PS----------------------GVCSALAAARV 228 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HH----------------------HHHHHHHHTTC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hH----------------------HHHHHHHhcCC
Confidence 66666666666655433 12222 555566666666665541 11 11111222233
Q ss_pred CCcEEEccccccCCCCC-CCCCCCCCCCEEEccccccccccCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEc
Q 045487 317 RLKGLYMSYNQFKGPIP-NNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGI 395 (729)
Q Consensus 317 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 395 (729)
+|++|++++|.+.+..+ ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++.+. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 34444444444443332 22333445555555555554 3343333 4555555555555433 33 555555555555
Q ss_pred ccccce
Q 045487 396 DQSNLV 401 (729)
Q Consensus 396 ~~~~~~ 401 (729)
++|.+.
T Consensus 304 ~~N~l~ 309 (312)
T 1wwl_A 304 KGNPFL 309 (312)
T ss_dssp TTCTTT
T ss_pred cCCCCC
Confidence 555544
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=7e-24 Score=226.33 Aligned_cols=228 Identities=25% Similarity=0.268 Sum_probs=164.2
Q ss_pred CCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCC
Q 045487 438 PNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKS 517 (729)
Q Consensus 438 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~ 517 (729)
++++.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..|..+++|++|++++|+++.... ..+..+++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN------GAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT------TTSCSCSS
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH------hHhhcccc
Confidence 456666666666665555556666666666666666665555666666666666666666665422 34556666
Q ss_pred CcEEEccCCcccccCCcchhcCccccceEecccCcccccCC-ccccCCCCccEEEccCCcccccCCccccccccCceEec
Q 045487 518 LKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIP-KEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYL 596 (729)
Q Consensus 518 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (729)
|++|++++|.+....+..+...+ +|++|++++|+..+.++ ..+..+++|++|++++|+++ .+| .+..+++|+.|++
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIP-SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL 214 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCT-TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEEC
T ss_pred CceeeCCCCcccccCHHHhhhCc-ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEEC
Confidence 77777777666655444454444 67777777655444444 35778888888888888887 444 4777888888888
Q ss_pred CCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCc
Q 045487 597 QNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 597 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 674 (729)
++|++++..+..+..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|++.
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 888888877888888888888888888888888888888888888888888888877788888888888888888764
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5.7e-27 Score=261.59 Aligned_cols=225 Identities=16% Similarity=0.131 Sum_probs=108.7
Q ss_pred CCCCCcEEEeecCcCccccChhhh-hhccccceEEcccC-cccccCCchhhccCCCCcEEEccccccCCCCCCCC----C
Q 045487 264 NLAELEMLVLTSNLLTGAIPASIF-NLSSMLTALDFTNN-SLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNL----W 337 (729)
Q Consensus 264 ~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~ 337 (729)
.+++|++|++++|.+.+..+..+. .+++ |++|++++| .+.+.....+...+++|++|++++|.+.+..+.++ .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~-L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTT-CCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCC-CcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 344555555555544433333333 2232 555555544 22211122222334455566665555444332222 2
Q ss_pred CCCCCCEEEccccc--cccc-cCcCccCCCCCcEEEeeCccccccccccccCCCCccEEEccccc-------ceeeCCcc
Q 045487 338 HCKDLSTVSLSFNQ--FTGR-IPRDLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSN-------LVGFVPDT 407 (729)
Q Consensus 338 ~~~~L~~L~L~~~~--l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~ 407 (729)
.+++|++|++++|. +... +......+++|++|++++|...+.++..+..+++|++|+++.+. +.+ ++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 45677777777765 2211 11122345777777777773333356666677777777754432 222 2234
Q ss_pred ccCCCCCcEE-ECcCccCcccCCCccccCCCCCCcEEECCCCcCcccC-CcchhcCCCCcEEEccCCccee-ccCccccc
Q 045487 408 ILNISTLKIL-SLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSI-PSFCFNASKLYALELGYNSFSG-LIPEALGN 484 (729)
Q Consensus 408 ~~~l~~L~~L-~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~ 484 (729)
+.++++|+.+ .+.+... +.++.... .+++|++|++++|.+.+.. ...+..+++|+.|++++| +.+ ..+.....
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~--~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYS--VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHH--HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HhcCCCcccccCCcccch-hhHHHHHH--hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 5667777777 3332211 11111111 2567777777777654321 122345666777776666 221 12222334
Q ss_pred cCCCcEEecc
Q 045487 485 LRNLKRLGLR 494 (729)
Q Consensus 485 l~~L~~L~l~ 494 (729)
+++|+.|++.
T Consensus 337 ~~~L~~L~L~ 346 (594)
T 2p1m_B 337 CKDLRELRVF 346 (594)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 6666666663
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=8.1e-24 Score=226.70 Aligned_cols=228 Identities=26% Similarity=0.298 Sum_probs=151.2
Q ss_pred CCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCC
Q 045487 438 PNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKS 517 (729)
Q Consensus 438 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~ 517 (729)
+++++|++++|.+.+..+..+.++++|+.|++++|.+.+..+..|..+++|++|++++|+++.... ..+..+++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS------GAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT------TTSSSCTT
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh------hhhcccCC
Confidence 456666666666665555556666666666666666665555666666666666666666655422 33555666
Q ss_pred CcEEEccCCcccccCCcchhcCccccceEecccCcccccCCc-cccCCCCccEEEccCCcccccCCccccccccCceEec
Q 045487 518 LKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPK-EIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYL 596 (729)
Q Consensus 518 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (729)
|++|++++|.+....+..+...+ +|++|++++|+..+.++. .+..+++|++|++++|++++ +| .+..+++|+.|++
T Consensus 149 L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 149 LRELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEM 225 (452)
T ss_dssp CCEEECCSCCCCEECTTTTTTCT-TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCEEECCCCCcceeCHhHHhcCC-cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEEC
Confidence 66666666666544433444443 566666665544444333 46677777788887777774 33 4666777777888
Q ss_pred CCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCc
Q 045487 597 QNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 597 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 674 (729)
++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++.
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 777777777777777777788888877777777777777777788888877777777777777777777887777754
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.5e-24 Score=237.64 Aligned_cols=286 Identities=27% Similarity=0.328 Sum_probs=171.9
Q ss_pred CCCCCCCCCCccceeE------eeCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCce
Q 045487 51 QNWTSNTSVCSWMGIT------CDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKE 124 (729)
Q Consensus 51 ~~w~~~~~~c~w~gv~------c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~ 124 (729)
..|..+.++|.|.|.. |......++.|+++++++. .+|..+. ++|++|++++|.++ .+|. .+++|++
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~ 85 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRT 85 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCE
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCE
Confidence 6788888899996632 2222345888999988887 6776555 78999999999887 4454 5688899
Q ss_pred eeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeec
Q 045487 125 LRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYN 204 (729)
Q Consensus 125 L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 204 (729)
|++++|.++ .+|. .+++|++|++++|.++ .+|.. + ++|+.|++++|
T Consensus 86 L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~~---l--------------------------~~L~~L~L~~N 131 (622)
T 3g06_A 86 LEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPAL---P--------------------------SGLCKLWIFGN 131 (622)
T ss_dssp EEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCCC---C--------------------------TTCCEEECCSS
T ss_pred EEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCCC---C--------------------------CCcCEEECCCC
Confidence 999999888 5665 6788899999888887 45541 1 55555666655
Q ss_pred CCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccCh
Q 045487 205 QFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPA 284 (729)
Q Consensus 205 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 284 (729)
.+++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+. .+|.
T Consensus 132 ~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~ 198 (622)
T 3g06_A 132 QLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT 198 (622)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC
T ss_pred CCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC
Confidence 5552 3332 2556666666665553 222 23456666666666553 22 33455666666666555 2332
Q ss_pred hhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccCCCCCCCCCCCCCCCEEEccccccccccCcCccCCC
Q 045487 285 SIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNST 364 (729)
Q Consensus 285 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~ 364 (729)
.+ + +|+.|++++|.+. .+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .++
T Consensus 199 ~~---~-~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 199 LP---S-ELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp CC---T-TCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred cc---c-hhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 21 2 2566666666555 3332 13446666666665553 22 23455666666666655 2333 345
Q ss_pred CCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccc
Q 045487 365 KLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTI 408 (729)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 408 (729)
+|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 5666666666555 455555666666666666666555544433
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4e-25 Score=237.72 Aligned_cols=236 Identities=20% Similarity=0.160 Sum_probs=174.6
Q ss_pred CCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCC
Q 045487 437 LPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCK 516 (729)
Q Consensus 437 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~ 516 (729)
+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++..+ ..+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----------~~~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----------VGP 99 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----------ECT
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----------CCC
Confidence 3456666666666665555555566666666666666654443 555555555555555544321 113
Q ss_pred CCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEec
Q 045487 517 SLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYL 596 (729)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (729)
+|+.|++++|.+.+..+. .+++|+.|++++|.+++..|..++.+++|+.|++
T Consensus 100 -------------------------~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 100 -------------------------SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp -------------------------TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred -------------------------CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 555555555555443332 3578999999999999887888888999999999
Q ss_pred CCCcccccCChhcc-CCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcc
Q 045487 597 QNNKFEGPIPQEFC-HFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNG 675 (729)
Q Consensus 597 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 675 (729)
++|.+++..|..+. .+++|++|++++|.+++..+ +..+++|++|++++|.+++..| .+..+++|+.|++++|.+++
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc
Confidence 99999988887776 78999999999999986633 3458899999999999988544 58889999999999999984
Q ss_pred cCCccCcCCCCCCEEeCCCCccc-cccccccccCCCCCeeecc
Q 045487 676 SLPLEIGNLKAVVNIDLSWNRLS-GNIPSTIVGLKNLQRLSLK 717 (729)
Q Consensus 676 ~~~~~l~~l~~L~~L~ls~n~~~-~~~p~~l~~l~~L~~l~l~ 717 (729)
+|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 229 -lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 7778888999999999999998 7778888888889888886
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=2.3e-23 Score=228.19 Aligned_cols=269 Identities=26% Similarity=0.369 Sum_probs=205.2
Q ss_pred CCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEE
Q 045487 388 RNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYAL 467 (729)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 467 (729)
.+++.++++++.+. .+|..+. ++|+.|++++|.+. .+|. .+++|++|++++|.+++ +|. .+++|+.|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTS-LPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC-----CCTTCCEEEECSCCCSC-CCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC-----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEE
Confidence 46899999999887 4565554 79999999999887 4444 37899999999999874 444 67899999
Q ss_pred EccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEe
Q 045487 468 ELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIY 547 (729)
Q Consensus 468 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 547 (729)
++++|.+++... .+++|+.|++++|+++..+. .+++|++|++++|.+.+ +|. .+.+++.|+
T Consensus 107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~ 167 (622)
T 3g06_A 107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----------LPPGLQELSVSDNQLAS-LPA----LPSELCKLW 167 (622)
T ss_dssp EECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSC-CCC----CCTTCCEEE
T ss_pred ECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----------CCCCCCEEECcCCcCCC-cCC----ccCCCCEEE
Confidence 999998876433 57889999999998887532 23789999999998775 332 234788888
Q ss_pred cccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCcccc
Q 045487 548 MYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSG 627 (729)
Q Consensus 548 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 627 (729)
+++|.+.. +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++. +|. .+++|+.|++++|++++
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~ 235 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS 235 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc
Confidence 88888765 44 456788888888888874 4432 4678888888888873 343 24778888888888884
Q ss_pred ccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccccccccccc
Q 045487 628 SIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVG 707 (729)
Q Consensus 628 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~ 707 (729)
+| ..+++|++|++++|.+++ +|. .+++|+.|+|++|+++ .+|..+.++++|+.|++++|++++..|..+..
T Consensus 236 -lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 236 -LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred -CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 55 445788888888888875 444 5678888888888888 67888888888888888888888888877665
Q ss_pred CC
Q 045487 708 LK 709 (729)
Q Consensus 708 l~ 709 (729)
++
T Consensus 307 L~ 308 (622)
T 3g06_A 307 IT 308 (622)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.9e-23 Score=207.17 Aligned_cols=217 Identities=28% Similarity=0.279 Sum_probs=149.3
Q ss_pred CCCCccceeEeeCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcC
Q 045487 57 TSVCSWMGITCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEI 136 (729)
Q Consensus 57 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 136 (729)
.++|.|.|+.|.. .+.++.+++++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999999875 345678999998887 4666544 58999999999998777778999999999999999998555
Q ss_pred cccccCCCCCCEEEccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccc
Q 045487 137 PEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWH 216 (729)
Q Consensus 137 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 216 (729)
+..|.++++|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+..
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------------~~L~~L~l~~n~l~~~~~~~~~~ 131 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQL--------------------------VNLAELRLDRNQLKSLPPRVFDS 131 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTC--------------------------SSCCEEECCSSCCCCCCTTTTTT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccc--------------------------cCCCEEECCCCccCeeCHHHhCc
Confidence 5567889999999999998873332333444 66666666666666555555666
Q ss_pred cCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccccChhhhhhccccceE
Q 045487 217 CKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGAIPASIFNLSSMLTAL 296 (729)
Q Consensus 217 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 296 (729)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|++++..+..+..++. |+.|
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L 210 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK-LKML 210 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEE
T ss_pred CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC-CCEE
Confidence 666666666666666554445666666666666666666555555666666666666666665222222333333 5555
Q ss_pred EcccCccc
Q 045487 297 DFTNNSLT 304 (729)
Q Consensus 297 ~l~~~~l~ 304 (729)
++++|.+.
T Consensus 211 ~l~~N~~~ 218 (270)
T 2o6q_A 211 QLQENPWD 218 (270)
T ss_dssp ECCSSCBC
T ss_pred EecCCCee
Confidence 55555443
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-24 Score=221.13 Aligned_cols=196 Identities=22% Similarity=0.207 Sum_probs=153.3
Q ss_pred hccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccC
Q 045487 512 LVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKL 591 (729)
Q Consensus 512 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 591 (729)
+..+++|++|++++|.+.+..+ +...+ +|++|++++|.+.+ +...++|++|++++|++++..+. .+++|
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-~L~~L~Ls~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L 122 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGK 122 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEEE--ETTCT-TCCEEECCSSEEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSC
T ss_pred hhCCCcCCEEECCCCcCCcchh--hhhcC-CCCEEECcCCcccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCC
Confidence 3444444444444444443222 22222 55555555555443 22347999999999999865543 36789
Q ss_pred ceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhh-cCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCC
Q 045487 592 QGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCL-GDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSS 670 (729)
Q Consensus 592 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 670 (729)
+.|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++. .....+++|++|++++
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSS 200 (317)
T ss_dssp EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCS
T ss_pred CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCC
Confidence 999999999998878888899999999999999998777776 4789999999999999876 2334589999999999
Q ss_pred CcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccc
Q 045487 671 NSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 671 n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~ 722 (729)
|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++.
T Consensus 201 N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 99995 5556999999999999999999 57888999999999999999998
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=9.2e-24 Score=209.55 Aligned_cols=210 Identities=18% Similarity=0.218 Sum_probs=123.9
Q ss_pred ccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccc
Q 045487 482 LGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEI 561 (729)
Q Consensus 482 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 561 (729)
...+++|+.++++++.+... ..+..+++|++|++++|.+.+. ..+..++ +|++|++++|.+.+..+..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--------QGIQYLPNVRYLALGGNKLHDI--SALKELT-NLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--------TTGGGCTTCCEEECTTSCCCCC--GGGTTCT-TCCEEECTTSCCCCCCTTTT
T ss_pred cccccceeeeeeCCCCcccc--------cccccCCCCcEEECCCCCCCCc--hhhcCCC-CCCEEECCCCccCccChhHh
Confidence 34455666666666655544 3455566666666666655431 1222222 44444444444444444445
Q ss_pred cCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCE
Q 045487 562 GSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRI 641 (729)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 641 (729)
..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 56666666666666666555555666666666666666666555555566666666666666666555555666666666
Q ss_pred EECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCC
Q 045487 642 LSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLK 709 (729)
Q Consensus 642 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~ 709 (729)
|++++|.+++..+..+..+++|+.|++++|++.+. +++|+.++++.|.++|.+|.+++.++
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred EECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 66666666666666666666666666666666532 34466666666666666666655543
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=8.4e-23 Score=202.48 Aligned_cols=202 Identities=23% Similarity=0.287 Sum_probs=128.0
Q ss_pred CcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecC
Q 045487 518 LKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQ 597 (729)
Q Consensus 518 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 597 (729)
.+.++++++.+.. +|..+. .++++|++++|.+....+..+..+++|++|++++|+++...+..+..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCc-cCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4455555554442 333222 255666666665555444456666677777777776664444455666777777777
Q ss_pred CCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccC
Q 045487 598 NNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSL 677 (729)
Q Consensus 598 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 677 (729)
+|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77766555555666677777777777776666666666777777777777776665556666777777777777776555
Q ss_pred CccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCcccc
Q 045487 678 PLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQG 723 (729)
Q Consensus 678 ~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~~ 723 (729)
+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|++.+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 5556666777777777777765555556666777777777776654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.9e-23 Score=205.90 Aligned_cols=207 Identities=24% Similarity=0.248 Sum_probs=128.6
Q ss_pred CcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecC
Q 045487 518 LKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQ 597 (729)
Q Consensus 518 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 597 (729)
+++|++++|.+.+..+..+...+ +|++|++++|.+.+..+..+..+++|++|++++|++++..+..+.++++|++|+++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 44444444444433333333333 44555555554444444456666677777777777766555666677777777777
Q ss_pred CCcccccCChhccCCCCCCEEECcCCccccc-cChhhcCCCCCCEEECcCCcCccCCChhhhccCCCC----EEeCCCCc
Q 045487 598 NNKFEGPIPQEFCHFSRLYEVDMNGNKLSGS-IPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDIL----SFDFSSNS 672 (729)
Q Consensus 598 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~L~~n~ 672 (729)
+|.+.+..+..+..+++|++|++++|++.+. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 7777655555566677777777777777653 466677777777777777777766666666666665 67777777
Q ss_pred CcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccccCCC
Q 045487 673 LNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQGPIP 726 (729)
Q Consensus 673 l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 726 (729)
+++..+.. ....+|++|++++|++++..+..|..+++|++|++++|++.+..|
T Consensus 189 l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 189 MNFIQPGA-FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEECTTS-SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccCccc-cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 76444433 333467777777777775555556667777777777777766544
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=7.2e-24 Score=228.00 Aligned_cols=237 Identities=22% Similarity=0.217 Sum_probs=152.2
Q ss_pred CCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCc
Q 045487 410 NISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLK 489 (729)
Q Consensus 410 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 489 (729)
.+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ .++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAAD--LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGG--GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHH--HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence 4568999999999998755443 4459999999999999987665 7889999999999999986543 48999
Q ss_pred EEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccE
Q 045487 490 RLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTT 569 (729)
Q Consensus 490 ~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 569 (729)
.|++++|.++.... ..+++|+.|++++|.+.+..|.. +..+++|++
T Consensus 103 ~L~L~~N~l~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~-------------------------~~~l~~L~~ 148 (487)
T 3oja_A 103 TLHAANNNISRVSC---------SRGQGKKNIYLANNKITMLRDLD-------------------------EGCRSRVQY 148 (487)
T ss_dssp EEECCSSCCCCEEE---------CCCSSCEEEECCSSCCCSGGGBC-------------------------GGGGSSEEE
T ss_pred EEECcCCcCCCCCc---------cccCCCCEEECCCCCCCCCCchh-------------------------hcCCCCCCE
Confidence 99999999887522 23466777777777666544433 444555555
Q ss_pred EEccCCcccccCCcccc-ccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCc
Q 045487 570 LGLGDNNLSGSLPMTLG-RLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNE 648 (729)
Q Consensus 570 L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 648 (729)
|++++|.+++..|..+. .+++|+.|++++|.+++.. ....+++|+.|++++|.+++..| .+..+++|+.|++++|.
T Consensus 149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNK 225 (487)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSC
T ss_pred EECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCc
Confidence 55555555554444443 4555555555555555431 12235555666666665554332 35555556666666665
Q ss_pred CccCCChhhhccCCCCEEeCCCCcCc-ccCCccCcCCCCCCEEeCC
Q 045487 649 LTSIIPSTFWNLEDILSFDFSSNSLN-GSLPLEIGNLKAVVNIDLS 693 (729)
Q Consensus 649 l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~ls 693 (729)
+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 226 l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred Ccc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 554 4445555555666666666555 4444445555555555543
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.5e-22 Score=199.51 Aligned_cols=177 Identities=21% Similarity=0.185 Sum_probs=100.4
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECc
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMN 621 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 621 (729)
.++.|++++|.+.+..+..+..+++|++|++++|.+++..+ .+.+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 44455555555444444455555666666666666553322 145556666666666655 445555555666666666
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccccc
Q 045487 622 GNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNI 701 (729)
Q Consensus 622 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~ 701 (729)
+|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++. .+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 66666555555666666666666666666555555556666666666666665444444455666666666666665 45
Q ss_pred ccccccCCCCCeeeccCCccc
Q 045487 702 PSTIVGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 702 p~~l~~l~~L~~l~l~~n~l~ 722 (729)
|..+..+++|+.+++++|++.
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBC
T ss_pred ChhhcccccCCeEEeCCCCcc
Confidence 555555556666666666554
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=7.8e-22 Score=196.48 Aligned_cols=213 Identities=23% Similarity=0.211 Sum_probs=139.7
Q ss_pred ccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccc
Q 045487 87 TIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFN 166 (729)
Q Consensus 87 ~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 166 (729)
.+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 3454443 47899999999888777778888899999999999888666667888888999988888877443344444
Q ss_pred cccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCC-CCccccCCCCCC
Q 045487 167 LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGR-LPRDLGNLTRLK 245 (729)
Q Consensus 167 l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~ 245 (729)
+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..++++++|+
T Consensus 99 l--------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 99 L--------------------------SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp C--------------------------TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred C--------------------------ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence 3 7777777777777655555666777777777777766652 466666677777
Q ss_pred EEEcccCcCcccCChhhhCCCCCc----EEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEE
Q 045487 246 SLYLGFNNLIGEIPEELGNLAELE----MLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGL 321 (729)
Q Consensus 246 ~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 321 (729)
+|++++|.+++..+..+..+++|+ +|++++|.+. .++...+... +|+.|
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~~--------------------------~L~~L 205 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI--------------------------RLKEL 205 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSCSC--------------------------CEEEE
T ss_pred EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc-ccCccccCCC--------------------------cccEE
Confidence 777777766655555555444444 4555555554 2222222222 35556
Q ss_pred EccccccCCCCCCCCCCCCCCCEEEcccccccc
Q 045487 322 YMSYNQFKGPIPNNLWHCKDLSTVSLSFNQFTG 354 (729)
Q Consensus 322 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~ 354 (729)
++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 666665555444455666666666666666553
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=9.4e-22 Score=195.05 Aligned_cols=223 Identities=22% Similarity=0.227 Sum_probs=191.2
Q ss_pred CCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCC
Q 045487 487 NLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLIN 566 (729)
Q Consensus 487 ~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 566 (729)
.+..+.+..+.+.+. .....+++|+.+++++|.+... ..+..++ +|++|++++|.+.+ + ..+..+++
T Consensus 20 ~l~~l~l~~~~~~~~--------~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~-~L~~L~l~~n~l~~-~-~~l~~l~~ 86 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--------VTQNELNSIDQIIANNSDIKSV--QGIQYLP-NVRYLALGGNKLHD-I-SALKELTN 86 (272)
T ss_dssp HHHHHHHTCSCTTSE--------ECHHHHTTCCEEECTTSCCCCC--TTGGGCT-TCCEEECTTSCCCC-C-GGGTTCTT
T ss_pred HHHHHHhcCcccccc--------cccccccceeeeeeCCCCcccc--cccccCC-CCcEEECCCCCCCC-c-hhhcCCCC
Confidence 344455555555544 4455678999999999987642 3455555 99999999999876 3 36889999
Q ss_pred ccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcC
Q 045487 567 LTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSS 646 (729)
Q Consensus 567 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 646 (729)
|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 99999999999977777789999999999999999988777789999999999999999987778889999999999999
Q ss_pred CcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccccCCC
Q 045487 647 NELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQGPIP 726 (729)
Q Consensus 647 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 726 (729)
|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+ .+++|+++++++|.++|.+|
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence 99999888889999999999999999998888888999999999999998874 35679999999999999999
Q ss_pred CCC
Q 045487 727 ESF 729 (729)
Q Consensus 727 ~~~ 729 (729)
.++
T Consensus 240 ~~~ 242 (272)
T 3rfs_A 240 NSA 242 (272)
T ss_dssp CTT
T ss_pred Ccc
Confidence 764
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6e-22 Score=200.71 Aligned_cols=227 Identities=16% Similarity=0.163 Sum_probs=175.9
Q ss_pred CCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcch--hcCccccceEecccCcccccCC----cc
Q 045487 487 NLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSI--GNHSVSVEEIYMYKCNIHGRIP----KE 560 (729)
Q Consensus 487 ~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~----~~ 560 (729)
.++.+.+.++.+... .+..+ .....+++|++|++++|.+.+..|..+ .... +|++|++++|.+.+..+ ..
T Consensus 65 ~l~~l~l~~~~~~~~--~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQ--LLVGA-LRVLAYSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCEEEECSCCCBHH--HHHHH-HHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHH
T ss_pred ceeEEEEeCCcCCHH--HHHHH-HHhcccCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHH
Confidence 355566665554422 11111 122234668888888888888777776 4444 88888888888876544 23
Q ss_pred ccCCCCccEEEccCCcccccCCccccccccCceEecCCCccccc--C--ChhccCCCCCCEEECcCCccccccCh----h
Q 045487 561 IGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGP--I--PQEFCHFSRLYEVDMNGNKLSGSIPS----C 632 (729)
Q Consensus 561 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~ 632 (729)
+..+++|++|++++|++.+..+..++.+++|++|++++|++.+. . +..+..+++|++|++++|+++. ++. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence 45789999999999999988888899999999999999997642 1 2234678999999999999973 332 3
Q ss_pred hcCCCCCCEEECcCCcCccCCChhhhcc---CCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCC
Q 045487 633 LGDLNSLRILSLSSNELTSIIPSTFWNL---EDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLK 709 (729)
Q Consensus 633 l~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~ 709 (729)
+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCC
Confidence 5788999999999999999888877776 69999999999999 7787775 8999999999999964 43 67889
Q ss_pred CCCeeeccCCcccc
Q 045487 710 NLQRLSLKHNKLQG 723 (729)
Q Consensus 710 ~L~~l~l~~n~l~~ 723 (729)
+|+.|++++|+++.
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 99999999999975
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.2e-23 Score=220.58 Aligned_cols=251 Identities=17% Similarity=0.233 Sum_probs=130.1
Q ss_pred cCCcchhcCCCCcEEEccCCcceeccC----ccccccCCCcEEeccCCcccCCcc----hhhhhhhhhccCCCCcEEEcc
Q 045487 453 SIPSFCFNASKLYALELGYNSFSGLIP----EALGNLRNLKRLGLRRNYLTSSTS----ELMSFFSALVNCKSLKVIVLS 524 (729)
Q Consensus 453 ~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~~~~l~~~~~L~~L~l~ 524 (729)
.++..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+..... .+..+...+..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 345566677888888888888765533 335677888888888775554322 222333445677777777777
Q ss_pred CCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCc----ccccc---------ccC
Q 045487 525 ENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPM----TLGRL---------KKL 591 (729)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l---------~~L 591 (729)
+|.+.+.... .+|..+..+++|++|++++|.+++..+. .+..+ ++|
T Consensus 103 ~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 103 DNAFGPTAQE---------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp SCCCCTTTHH---------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHH---------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence 7776652111 1222334444555555555554322111 12222 455
Q ss_pred ceEecCCCcccc-cCC---hhccCCCCCCEEECcCCcccc-----ccChhhcCCCCCCEEECcCCcCc----cCCChhhh
Q 045487 592 QGLYLQNNKFEG-PIP---QEFCHFSRLYEVDMNGNKLSG-----SIPSCLGDLNSLRILSLSSNELT----SIIPSTFW 658 (729)
Q Consensus 592 ~~L~l~~n~l~~-~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~ 658 (729)
++|++++|+++. .++ ..+..+++|++|++++|+++. ..+..+..+++|++|++++|.++ +.+|..+.
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 555555555541 222 233344555555555555541 12224445555555555555553 33444555
Q ss_pred ccCCCCEEeCCCCcCccc----CCccC--cCCCCCCEEeCCCCcccc----cccccc-ccCCCCCeeeccCCccccC
Q 045487 659 NLEDILSFDFSSNSLNGS----LPLEI--GNLKAVVNIDLSWNRLSG----NIPSTI-VGLKNLQRLSLKHNKLQGP 724 (729)
Q Consensus 659 ~l~~L~~L~L~~n~l~~~----~~~~l--~~l~~L~~L~ls~n~~~~----~~p~~l-~~l~~L~~l~l~~n~l~~~ 724 (729)
.+++|+.|+|++|.+++. ++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++.+.
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 555555555555555433 23333 225555555555555554 244444 3455555555555555543
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=6.3e-23 Score=212.71 Aligned_cols=260 Identities=16% Similarity=0.175 Sum_probs=174.5
Q ss_pred EEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccC----ccccccC-CCcEEeccCCcccCCcchhhhhhhhhccC-
Q 045487 442 LLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIP----EALGNLR-NLKRLGLRRNYLTSSTSELMSFFSALVNC- 515 (729)
Q Consensus 442 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~l~~~- 515 (729)
.++++.+.+++.+|......++|+.|++++|.+.+..+ ..+..++ +|++|++++|++....... +...+...
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE--LVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH--HHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH--HHHHHhccC
Confidence 35788888888887777777779999999998887666 6677787 8999999998887763321 22333443
Q ss_pred CCCcEEEccCCcccccCCcchhc----CccccceEecccCcccccCCcc----ccC-CCCccEEEccCCcccccC----C
Q 045487 516 KSLKVIVLSENPLDGVLPSSIGN----HSVSVEEIYMYKCNIHGRIPKE----IGS-LINLTTLGLGDNNLSGSL----P 582 (729)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~----~ 582 (729)
++|++|++++|.+.+..+..+.. .+.+|++|++++|.+.+..+.. +.. .++|++|++++|++++.. +
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 88889999888887766654433 2247888888888776554433 223 357888888888777433 2
Q ss_pred ccccccc-cCceEecCCCcccccCChhcc----CC-CCCCEEECcCCccccc----cChhhcC-CCCCCEEECcCCcCcc
Q 045487 583 MTLGRLK-KLQGLYLQNNKFEGPIPQEFC----HF-SRLYEVDMNGNKLSGS----IPSCLGD-LNSLRILSLSSNELTS 651 (729)
Q Consensus 583 ~~l~~l~-~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~~~~~----~~~~l~~-l~~L~~L~l~~n~l~~ 651 (729)
..+..++ +|++|++++|++++..+..+. .+ ++|++|++++|++.+. ++..+.. .++|++|++++|.+++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 3334444 788888888877766554443 34 4788888888877752 3444444 3578888888887776
Q ss_pred CCCh----hhhccCCCCEEeCCCCcCcc-------cCCccCcCCCCCCEEeCCCCcccccccc
Q 045487 652 IIPS----TFWNLEDILSFDFSSNSLNG-------SLPLEIGNLKAVVNIDLSWNRLSGNIPS 703 (729)
Q Consensus 652 ~~~~----~~~~l~~L~~L~L~~n~l~~-------~~~~~l~~l~~L~~L~ls~n~~~~~~p~ 703 (729)
..+. .+..+++|++|++++|.+.+ .++..+.++++|+.||+++|.+.+..+.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 5543 33456778888888887432 2334566777777788888877766443
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.6e-21 Score=189.39 Aligned_cols=181 Identities=24% Similarity=0.281 Sum_probs=117.9
Q ss_pred CCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEe
Q 045487 516 KSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLY 595 (729)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 595 (729)
...++++++++.+. .+|..+. ..++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 45667777777665 3444332 2666677777766666666666666777777777766665555666666777777
Q ss_pred cCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcc
Q 045487 596 LQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNG 675 (729)
Q Consensus 596 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 675 (729)
+++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 77776665555566666667777777776665555556666667777777776666555566666667777777776665
Q ss_pred cCCccCcCCCCCCEEeCCCCccccc
Q 045487 676 SLPLEIGNLKAVVNIDLSWNRLSGN 700 (729)
Q Consensus 676 ~~~~~l~~l~~L~~L~ls~n~~~~~ 700 (729)
..+..+..+++|+.|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5555666666677777777666544
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.5e-21 Score=191.09 Aligned_cols=192 Identities=25% Similarity=0.266 Sum_probs=160.1
Q ss_pred CCCccceeEeeCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCc
Q 045487 58 SVCSWMGITCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIP 137 (729)
Q Consensus 58 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p 137 (729)
+||.|.|.+|.. ..+.+++++..+. .+|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+.+..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 688999999953 3456888888876 5666554 589999999999998888899999999999999999998888
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCCCcccccc
Q 045487 138 EELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHC 217 (729)
Q Consensus 138 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 217 (729)
..|.++++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------------------------~~L~~L~L~~N~l~~~~~~~~~~l 130 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHL--------------------------TQLDKLYLGGNQLKSLPSGVFDRL 130 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTC--------------------------TTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hHhccCCcCCEEECCCCcccccChhHhccc--------------------------CCCCEEEcCCCcCCCcChhHhccC
Confidence 889999999999999999883333333333 888999999998886666667888
Q ss_pred CCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhCCCCCcEEEeecCcCccc
Q 045487 218 KGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGNLAELEMLVLTSNLLTGA 281 (729)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 281 (729)
++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+..+++|++|++++|++...
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999999988877666788899999999999999887777888899999999999988754
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=9.4e-23 Score=211.44 Aligned_cols=260 Identities=18% Similarity=0.207 Sum_probs=189.0
Q ss_pred EEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCC----cchhcCC-CCcEEEccCCcceeccCcccccc-----
Q 045487 416 ILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIP----SFCFNAS-KLYALELGYNSFSGLIPEALGNL----- 485 (729)
Q Consensus 416 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l----- 485 (729)
.++++.|.+.+.+|..... .++|++|++++|.+.+..+ ..+..++ +|+.|++++|.+.+..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI--PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS--CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhC--CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 3567888887766655443 5669999999999887655 5666777 89999999999887766666654
Q ss_pred CCCcEEeccCCcccCCcchhhhhhhhhccC-CCCcEEEccCCcccccCCcchhcC----ccccceEecccCccccc----
Q 045487 486 RNLKRLGLRRNYLTSSTSELMSFFSALVNC-KSLKVIVLSENPLDGVLPSSIGNH----SVSVEEIYMYKCNIHGR---- 556 (729)
Q Consensus 486 ~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~---- 556 (729)
++|++|++++|+++...... +...+..+ ++|++|++++|.+.+..+..+... +.+|++|++++|.+.+.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDE--LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHH--HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCccEEECcCCcCChHHHHH--HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 89999999999888654322 33445666 789999999999887666554432 34899999999988753
Q ss_pred CCccccCCC-CccEEEccCCcccccCCcc----cccc-ccCceEecCCCccccc----CChhccC-CCCCCEEECcCCcc
Q 045487 557 IPKEIGSLI-NLTTLGLGDNNLSGSLPMT----LGRL-KKLQGLYLQNNKFEGP----IPQEFCH-FSRLYEVDMNGNKL 625 (729)
Q Consensus 557 ~~~~~~~l~-~L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~~ 625 (729)
++..+..++ +|++|++++|++++..+.. +..+ ++|++|++++|.+++. ++..+.. .++|++|++++|++
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 333445555 8999999999988665543 3444 5899999999998863 3344444 35899999999998
Q ss_pred ccccC----hhhcCCCCCCEEECcCCcCccCCC-------hhhhccCCCCEEeCCCCcCcccCCc
Q 045487 626 SGSIP----SCLGDLNSLRILSLSSNELTSIIP-------STFWNLEDILSFDFSSNSLNGSLPL 679 (729)
Q Consensus 626 ~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~ 679 (729)
++..+ ..+..+++|++|++++|.+.+..+ ..+..+++|++||+++|++.+..+.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 86544 335667889999999998555433 3456778889999999998765443
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=7.9e-23 Score=210.40 Aligned_cols=251 Identities=17% Similarity=0.219 Sum_probs=132.0
Q ss_pred CCcEEECCCCcCcccCCcchhcC--CCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCC
Q 045487 439 NLELLNLGLNNFSGSIPSFCFNA--SKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCK 516 (729)
Q Consensus 439 ~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~ 516 (729)
.++.++++++.+. +..+... +.++.+++++|.+.+..+. +..+++|+.|++++|.+... .++..+..++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~-----~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS-----TLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH-----HHHHHHTTBC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH-----HHHHHHhhCC
Confidence 4677888877765 3444445 6778888888877765554 44577777777777765432 0224455666
Q ss_pred CCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCC-ccccc-CCccccccccCceE
Q 045487 517 SLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDN-NLSGS-LPMTLGRLKKLQGL 594 (729)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L 594 (729)
+|++|++++|.+.+..+.. +..+++|++|++++| .+++. ++..+.++++|++|
T Consensus 119 ~L~~L~L~~~~l~~~~~~~-------------------------l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNT-------------------------LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCSEEECTTCBCCHHHHHH-------------------------HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEeCcCcccCHHHHHH-------------------------HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 7777777666655444443 444455555555555 34321 33334455555555
Q ss_pred ecCCC-ccccc-CChhccCCC-CCCEEECcCC--ccc-cccChhhcCCCCCCEEECcCCc-CccCCChhhhccCCCCEEe
Q 045487 595 YLQNN-KFEGP-IPQEFCHFS-RLYEVDMNGN--KLS-GSIPSCLGDLNSLRILSLSSNE-LTSIIPSTFWNLEDILSFD 667 (729)
Q Consensus 595 ~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 667 (729)
++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|+
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 55555 44432 233444555 5555555555 232 2334444455555555555555 4444455555555555555
Q ss_pred CCCCc-CcccCCccCcCCCCCCEEeCCCCccccccccccccC-CCCCeeeccCCccccCCCC
Q 045487 668 FSSNS-LNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGL-KNLQRLSLKHNKLQGPIPE 727 (729)
Q Consensus 668 L~~n~-l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l-~~L~~l~l~~n~l~~~~p~ 727 (729)
+++|. +.......+.++++|+.|++++| +... .+..+ .+++.|++++|++++.+|.
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 55553 22111123445555555555555 2221 22222 2244444555555555554
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=8.1e-21 Score=189.59 Aligned_cols=202 Identities=24% Similarity=0.241 Sum_probs=125.6
Q ss_pred hcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhc
Q 045487 459 FNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGN 538 (729)
Q Consensus 459 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 538 (729)
.++++++.++++++.++.. |..+ .++++.|++++|.++... +..+..+++|++|++++|.+.+
T Consensus 7 ~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~n~l~~-------- 69 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFS------LATLMPYTRLTQLNLDRAELTK-------- 69 (290)
T ss_dssp ECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEE------GGGGTTCTTCCEEECTTSCCCE--------
T ss_pred cccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccC------HHHhhcCCCCCEEECCCCccCc--------
Confidence 4455666666666666533 3222 245666666666655441 1344555556666665555442
Q ss_pred CccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEE
Q 045487 539 HSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEV 618 (729)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 618 (729)
..+ ...+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|..+++|++|
T Consensus 70 -----------------~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 70 -----------------LQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp -----------------EEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred -----------------ccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 211 145566777777777666 455566666777777777777766555666667777777
Q ss_pred ECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccc
Q 045487 619 DMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 619 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~ 698 (729)
++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+++ .+|..+...++|+.|++++|++.
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 77777777555556666677777777777776655556666777777777777776 56666666667777777777654
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=9.8e-23 Score=213.66 Aligned_cols=253 Identities=17% Similarity=0.176 Sum_probs=175.5
Q ss_pred CCCCCcEEECCCCcCcccCC----cchhcCCCCcEEEccCCc---ceeccCccc-------cccCCCcEEeccCCcccCC
Q 045487 436 GLPNLELLNLGLNNFSGSIP----SFCFNASKLYALELGYNS---FSGLIPEAL-------GNLRNLKRLGLRRNYLTSS 501 (729)
Q Consensus 436 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~---~~~~~~~~~-------~~l~~L~~L~l~~~~l~~~ 501 (729)
.+++|++|++++|.+....+ ..+..+++|+.|++++|. +.+..|..+ ..+++|++|++++|.+...
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 47899999999999886533 336689999999999964 444555444 6889999999999998874
Q ss_pred cchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCccc-cc
Q 045487 502 TSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLS-GS 580 (729)
Q Consensus 502 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~ 580 (729)
.. ..++..+..+++|++|++++|.+....+..+......+. .+.+. ...++|++|++++|+++ +.
T Consensus 110 ~~--~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~-----~~~~~-------~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 110 AQ--EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA-----VNKKA-------KNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp TH--HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH-----HHHHH-------HTCCCCCEEECCSSCCTGGG
T ss_pred HH--HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh-----hhhhc-------ccCCCCcEEECCCCCCCcHH
Confidence 22 224567888999999999999886543333322110000 00000 01167777788777776 22
Q ss_pred CC---ccccccccCceEecCCCcccc-----cCChhccCCCCCCEEECcCCccc----cccChhhcCCCCCCEEECcCCc
Q 045487 581 LP---MTLGRLKKLQGLYLQNNKFEG-----PIPQEFCHFSRLYEVDMNGNKLS----GSIPSCLGDLNSLRILSLSSNE 648 (729)
Q Consensus 581 ~~---~~l~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~ 648 (729)
++ ..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|++++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 33 355667788888888887763 23336667788888888888875 4566777778888888888888
Q ss_pred CccC----CChhhhc--cCCCCEEeCCCCcCcc----cCCccC-cCCCCCCEEeCCCCccccccc
Q 045487 649 LTSI----IPSTFWN--LEDILSFDFSSNSLNG----SLPLEI-GNLKAVVNIDLSWNRLSGNIP 702 (729)
Q Consensus 649 l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~ls~n~~~~~~p 702 (729)
+++. ++..+.. +++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..+
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7765 4455533 7888888888888876 466666 557888888888888886663
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=8.3e-21 Score=191.59 Aligned_cols=146 Identities=20% Similarity=0.376 Sum_probs=104.2
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECc
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMN 621 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 621 (729)
+|++|++++|.+.+ ++ .+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+ +..+++|+.|+++
T Consensus 86 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 86 KITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG 159 (308)
T ss_dssp SCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc
Confidence 34444444444332 22 366777888888888888753 3 37778888888888888875433 7778888888888
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccc
Q 045487 622 GNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 622 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
+|++++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++
T Consensus 160 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 160 NAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 888875433 7778888888888888876533 777888888888888887544 37778888888888888864
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=8.6e-22 Score=202.61 Aligned_cols=254 Identities=14% Similarity=0.155 Sum_probs=153.8
Q ss_pred CCCcEEECcCccCcccCCCccccCCC--CCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceec-cCccccccCCC
Q 045487 412 STLKILSLFNNTFSGNLPSSKNLIGL--PNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGL-IPEALGNLRNL 488 (729)
Q Consensus 412 ~~L~~L~l~~n~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L 488 (729)
..++.++++++.+... . +..+ ++++.+++++|.+.+..+. +..+++|+.|++++|.+.+. .+..+..+++|
T Consensus 47 ~~~~~l~l~~~~~~~~---~--~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPD---V--TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCCHH---H--HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hhheeeccccccCCHH---H--HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 3488999999877521 1 1224 7899999999999877665 55789999999999998765 77788999999
Q ss_pred cEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCC-ccccc-CCcchhcCccccceEecccCcccccCCccccCCCC
Q 045487 489 KRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSEN-PLDGV-LPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLIN 566 (729)
Q Consensus 489 ~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 566 (729)
++|++++|.+++. .+..+..+++|++|++++| .+.+. ++.. +..+++
T Consensus 121 ~~L~L~~~~l~~~------~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-------------------------~~~~~~ 169 (336)
T 2ast_B 121 QNLSLEGLRLSDP------IVNTLAKNSNLVRLNLSGCSGFSEFALQTL-------------------------LSSCSR 169 (336)
T ss_dssp SEEECTTCBCCHH------HHHHHTTCTTCSEEECTTCBSCCHHHHHHH-------------------------HHHCTT
T ss_pred CEEeCcCcccCHH------HHHHHhcCCCCCEEECCCCCCCCHHHHHHH-------------------------HhcCCC
Confidence 9999999987654 3466778899999999998 55532 2222 333445
Q ss_pred ccEEEccCC-ccccc-CCccccccc-cCceEecCCC--ccc-ccCChhccCCCCCCEEECcCCc-cccccChhhcCCCCC
Q 045487 567 LTTLGLGDN-NLSGS-LPMTLGRLK-KLQGLYLQNN--KFE-GPIPQEFCHFSRLYEVDMNGNK-LSGSIPSCLGDLNSL 639 (729)
Q Consensus 567 L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L 639 (729)
|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 555555555 44432 333444455 5555555555 232 2233344455555555555555 444444455555555
Q ss_pred CEEECcCCc-CccCCChhhhccCCCCEEeCCCCcCcccCCccCcCC-CCCCEEeCCCCccccccccccc
Q 045487 640 RILSLSSNE-LTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNL-KAVVNIDLSWNRLSGNIPSTIV 706 (729)
Q Consensus 640 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~ls~n~~~~~~p~~l~ 706 (729)
++|++++|. +.......+..+++|+.|++++| ++. ..+..+ ..+..|++++|++++..|..++
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 555555553 22221223455555555555555 221 112222 2244555556666655555444
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.2e-20 Score=183.45 Aligned_cols=197 Identities=19% Similarity=0.216 Sum_probs=140.0
Q ss_pred CCcEEEccCCcccccCCcchhcCccccceEecccCc-ccccCCccccCCCCccEEEccC-CcccccCCccccccccCceE
Q 045487 517 SLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCN-IHGRIPKEIGSLINLTTLGLGD-NNLSGSLPMTLGRLKKLQGL 594 (729)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L 594 (729)
++++|++++|.+.+..+..+..++ +|++|++++|. +....+..|..+++|++|++++ |++++..+..+.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 344444444444443333333333 55555555554 4444444677788888888887 78876666778888888888
Q ss_pred ecCCCcccccCChhccCCCCCC---EEECcCC-ccccccChhhcCCCCCC-EEECcCCcCccCCChhhhccCCCCEEeCC
Q 045487 595 YLQNNKFEGPIPQEFCHFSRLY---EVDMNGN-KLSGSIPSCLGDLNSLR-ILSLSSNELTSIIPSTFWNLEDILSFDFS 669 (729)
Q Consensus 595 ~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 669 (729)
++++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ +|++++|.++...+..|.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 888888875 454 77777777 8888888 88866667788888888 8888888888655555655 788888888
Q ss_pred CCc-CcccCCccCcCC-CCCCEEeCCCCccccccccccccCCCCCeeeccCCc
Q 045487 670 SNS-LNGSLPLEIGNL-KAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNK 720 (729)
Q Consensus 670 ~n~-l~~~~~~~l~~l-~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~ 720 (729)
+|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 885 876666778888 888888888888884 4543 57788888887763
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.5e-20 Score=182.75 Aligned_cols=184 Identities=16% Similarity=0.175 Sum_probs=163.1
Q ss_pred ccccceEecccCcccccCCccccCCCCccEEEccCCc-ccccCCccccccccCceEecCC-CcccccCChhccCCCCCCE
Q 045487 540 SVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNN-LSGSLPMTLGRLKKLQGLYLQN-NKFEGPIPQEFCHFSRLYE 617 (729)
Q Consensus 540 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~ 617 (729)
+.++++|++++|.+.+..+..+..+++|++|++++|+ +++..+..+.++++|++|++++ |+++...+..|..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3389999999999998777789999999999999997 8766667899999999999999 9999777788999999999
Q ss_pred EECcCCccccccChhhcCCCCCC---EEECcCC-cCccCCChhhhccCCCC-EEeCCCCcCcccCCccCcCCCCCCEEeC
Q 045487 618 VDMNGNKLSGSIPSCLGDLNSLR---ILSLSSN-ELTSIIPSTFWNLEDIL-SFDFSSNSLNGSLPLEIGNLKAVVNIDL 692 (729)
Q Consensus 618 L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~l 692 (729)
|++++|++++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|+++ .+|......++|+.|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEc
Confidence 9999999995 665 88889998 9999999 99988888899999999 9999999998 55555444489999999
Q ss_pred CCCc-cccccccccccC-CCCCeeeccCCccccCCCC
Q 045487 693 SWNR-LSGNIPSTIVGL-KNLQRLSLKHNKLQGPIPE 727 (729)
Q Consensus 693 s~n~-~~~~~p~~l~~l-~~L~~l~l~~n~l~~~~p~ 727 (729)
++|+ +++..+..|..+ ++|++|++++|++++ +|.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~ 222 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPS 222 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCcccc-CCh
Confidence 9995 987777889999 999999999999986 543
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=8.5e-20 Score=184.21 Aligned_cols=192 Identities=25% Similarity=0.356 Sum_probs=142.2
Q ss_pred CCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCC
Q 045487 437 LPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCK 516 (729)
Q Consensus 437 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~ 516 (729)
+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|+++.. ..+..++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--------~~~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--------SAIAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--------GGGTTCT
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--------hhhcCCC
Confidence 5677777777776654 22 35556666666666666654433 56666666666666665553 3344555
Q ss_pred CCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEec
Q 045487 517 SLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYL 596 (729)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (729)
+|++|++++|.+ .+ ++. +..+++|++|++++|++++..+ +..+++|+.|++
T Consensus 108 ~L~~L~l~~n~l-------------------------~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 158 (308)
T 1h6u_A 108 SIKTLDLTSTQI-------------------------TD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158 (308)
T ss_dssp TCCEEECTTSCC-------------------------CC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred CCCEEECCCCCC-------------------------CC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEc
Confidence 555555555544 33 222 6788999999999999985433 888999999999
Q ss_pred CCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcc
Q 045487 597 QNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNG 675 (729)
Q Consensus 597 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 675 (729)
++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|++++
T Consensus 159 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 159 GNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 9999986433 8899999999999999986544 788999999999999999765 48899999999999999974
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=6.2e-20 Score=174.11 Aligned_cols=175 Identities=19% Similarity=0.185 Sum_probs=126.4
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECc
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMN 621 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 621 (729)
++++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 56666666666665555556777788888888888776555566778888888888888876666667777888888888
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccccc
Q 045487 622 GNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNI 701 (729)
Q Consensus 622 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~ 701 (729)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+ .+++|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 888876666667778888888888888877666667778888888888887753 3456788888888888888
Q ss_pred ccccccCCCCCeeeccCCccccCCCC
Q 045487 702 PSTIVGLKNLQRLSLKHNKLQGPIPE 727 (729)
Q Consensus 702 p~~l~~l~~L~~l~l~~n~l~~~~p~ 727 (729)
|..++.++. ++..|...|..++
T Consensus 182 p~~~~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 182 RNSAGSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp BCTTSSBCT----TCSBBTTTCCBGG
T ss_pred eccCccccC----CccccccCCCcce
Confidence 877776654 4555555444443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.6e-19 Score=171.26 Aligned_cols=175 Identities=23% Similarity=0.242 Sum_probs=150.7
Q ss_pred eEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCc
Q 045487 545 EIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNK 624 (729)
Q Consensus 545 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 624 (729)
.++..++.+. .+|..+ .+++++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4444444433 344333 4689999999999997777778999999999999999997777778899999999999999
Q ss_pred cccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccc
Q 045487 625 LSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPST 704 (729)
Q Consensus 625 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~ 704 (729)
+++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 997777778999999999999999999888889999999999999999997777778999999999999998763
Q ss_pred cccCCCCCeeeccCCccccCCCCCC
Q 045487 705 IVGLKNLQRLSLKHNKLQGPIPESF 729 (729)
Q Consensus 705 l~~l~~L~~l~l~~n~l~~~~p~~~ 729 (729)
.+++|++|++++|.++|.+|+++
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred --CCCCHHHHHHHHHhCCceeeccC
Confidence 46789999999999999999764
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=5.4e-20 Score=186.26 Aligned_cols=134 Identities=17% Similarity=0.179 Sum_probs=74.4
Q ss_pred CCCceeeccCCcCCCcCcc---cccCCCCCCEEEccCCcCCCCCCccc--cccccccccccccccccccCCCcchhccCC
Q 045487 120 TKLKELRLRYNKLQGEIPE---ELGNLAELEVLVLNNNLLTGTIPASI--FNLSSISTGLDFSNNSLTGSFPDDMCEGLP 194 (729)
Q Consensus 120 ~~L~~L~L~~~~~~~~~p~---~~~~l~~L~~L~l~~~~~~~~~p~~l--~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~ 194 (729)
..++.+.+.++.+....-. .+..+++|++|++++|.+.+..|..+ .++ +
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--------------------------~ 117 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG--------------------------L 117 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC--------------------------B
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC--------------------------C
Confidence 3456666666655421100 11234556666666666665555444 222 6
Q ss_pred CccEEEeeecCCcCCCC----ccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCccc--C--ChhhhCCC
Q 045487 195 RLKGLYVSYNQFKGPIP----NNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGE--I--PEELGNLA 266 (729)
Q Consensus 195 ~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~--~~~l~~l~ 266 (729)
+|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..++++++|++|++++|.+.+. + +..+.+++
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence 67777777776665443 2334566666666666666666556666666666666666665431 1 12234566
Q ss_pred CCcEEEeecCcCc
Q 045487 267 ELEMLVLTSNLLT 279 (729)
Q Consensus 267 ~L~~L~l~~~~~~ 279 (729)
+|++|++++|.++
T Consensus 198 ~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 198 AIQNLALRNTGME 210 (310)
T ss_dssp CCCSCBCCSSCCC
T ss_pred CCCEEECCCCCCC
Confidence 6666666666654
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.9e-19 Score=193.14 Aligned_cols=188 Identities=26% Similarity=0.341 Sum_probs=132.4
Q ss_pred CCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCC
Q 045487 487 NLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLIN 566 (729)
Q Consensus 487 ~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 566 (729)
+++.|++++|.+++.+.. + .++|++|++++|.+. .+| ...++|+.|++++|.+.+ +|. +.. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~-------l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN-------L--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSCCSCCCSC-------C--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--T
T ss_pred CccEEEeCCCCCCccCHh-------H--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--C
Confidence 788888888887765321 2 267888888888777 455 223478888888887776 665 444 7
Q ss_pred ccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcC
Q 045487 567 LTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSS 646 (729)
Q Consensus 567 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 646 (729)
|++|++++|++++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++|+.|++++
T Consensus 122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 8888888888775 554 57778888888888775 444 45778888888888775 555 54 7788888888
Q ss_pred CcCccCCChhhhccCCC-------CEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCC
Q 045487 647 NELTSIIPSTFWNLEDI-------LSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLK 709 (729)
Q Consensus 647 n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~ 709 (729)
|.++. +|. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..+.
T Consensus 190 N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 190 NLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 88773 454 443 56 88888888887 5777777788888888888888877777766653
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=2.9e-19 Score=193.21 Aligned_cols=207 Identities=26% Similarity=0.325 Sum_probs=144.9
Q ss_pred CCCCCCCCCC-----cccee-EeeCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCce
Q 045487 51 QNWTSNTSVC-----SWMGI-TCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKE 124 (729)
Q Consensus 51 ~~w~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~ 124 (729)
.+|..+.++| .|.++ .|. .++++.|+++++.+.+ +|..+. ++|++|+|++|.++ .+| ..+++|++
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~ 104 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEY 104 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred HHHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCE
Confidence 4566666677 79998 686 4589999999999986 777663 78999999999998 566 55799999
Q ss_pred eeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeec
Q 045487 125 LRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYN 204 (729)
Q Consensus 125 L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 204 (729)
|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+.++ +.|++++|.+++ +|. .+++|++|++++|
T Consensus 105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALL-EYINADNNQLTM-LPE----LPTSLEVLSVRNN 170 (571)
T ss_dssp EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC----CCTTCCEEECCSS
T ss_pred EEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccc-cEEeCCCCccCc-CCC----cCCCcCEEECCCC
Confidence 9999999995 777 766 99999999999984 776 33333 667777777664 444 3466777777777
Q ss_pred CCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCC-------CEEEcccCcCcccCChhhhCCCCCcEEEeecCc
Q 045487 205 QFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRL-------KSLYLGFNNLIGEIPEELGNLAELEMLVLTSNL 277 (729)
Q Consensus 205 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 277 (729)
.+++ +|. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.
T Consensus 171 ~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 171 QLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred CCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 6664 555 44 66777777777666 4444 433 45 66666666666 355555566666666666666
Q ss_pred CccccChhhhhh
Q 045487 278 LTGAIPASIFNL 289 (729)
Q Consensus 278 ~~~~~~~~~~~~ 289 (729)
+++.+|..+..+
T Consensus 242 l~~~~p~~l~~l 253 (571)
T 3cvr_A 242 LSSRIRESLSQQ 253 (571)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 666666555544
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=9.1e-19 Score=167.02 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=89.7
Q ss_pred ceEecccCcccccCCccccCCCCccEEEccCCcccccCC-ccccccccCceEecCCCcccccCChhccCCCCCCEEECcC
Q 045487 544 EEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLP-MTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNG 622 (729)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 622 (729)
+.++++++.+.. +|..+ .+.+++|++++|++++..+ ..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 455666555543 44333 2345566666666664433 3355666666666666666655555566666666666666
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccc
Q 045487 623 NKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 623 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
|++++..+..|..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+..+++|+.|++++|++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66665555556666666666666666666556666666666666666666665555566666666666666666553
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.1e-18 Score=166.58 Aligned_cols=152 Identities=22% Similarity=0.301 Sum_probs=94.2
Q ss_pred ceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCC
Q 045487 544 EEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGN 623 (729)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 623 (729)
+.++.+++.+. .+|..+. ++++.|++++|++++..+..+..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555443 3443332 46666666666666555556666666666666666666665666666666666666666
Q ss_pred ccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccc
Q 045487 624 KLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 624 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~ 698 (729)
+++...+..|..+++|++|++++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666544455566666666666666666666666666666666666666666555555666666666666666664
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=4.6e-18 Score=175.08 Aligned_cols=201 Identities=20% Similarity=0.190 Sum_probs=113.2
Q ss_pred CEEeCCCccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccccc
Q 045487 99 QTLVLSHNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSN 178 (729)
Q Consensus 99 ~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~ 178 (729)
++++-++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+|.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---------------- 72 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA---------------- 72 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT----------------
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh----------------
Confidence 45666666665 445544 25677777777777733334567777777777777766534433
Q ss_pred cccccCCCcchhccCCCccE-EEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEccc-CcCcc
Q 045487 179 NSLTGSFPDDMCEGLPRLKG-LYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGF-NNLIG 256 (729)
Q Consensus 179 ~~~~~~~~~~~~~~l~~L~~-L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-~~~~~ 256 (729)
.++.+++++++ +.++.|+++...|..+..+++|++|++++|.+....+..+....++..|++.+ +.+..
T Consensus 73 ---------~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 73 ---------DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp ---------TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred ---------hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence 22222355443 44555666655566666777777777777766655444455555666666654 33443
Q ss_pred cCChhhhCCC-CCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCchhhccCCCCcEEEccccccC
Q 045487 257 EIPEELGNLA-ELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQFK 329 (729)
Q Consensus 257 ~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 329 (729)
..+..+..+. .++.|++++|+++ .++...+...+ ++++++.++...+.+|...+..+++|+.|++++|.++
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~-L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEE-EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred ccccchhhcchhhhhhcccccccc-CCChhhccccc-hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 3334444443 4666666666665 45555555444 6666665433333555555555555555555555554
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.8e-18 Score=163.22 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=105.5
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECc
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMN 621 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 621 (729)
+.+.++.+++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++....+..+..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4455666655543 445433 2677777777777776666667777777777777777765555556677777777777
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccc
Q 045487 622 GNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGN 700 (729)
Q Consensus 622 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~ 700 (729)
+|++++..+..|..+++|++|++++|.++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++...
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 77777665666677777777777777776 4566677777777777777777755555667777777777777777643
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.7e-18 Score=177.56 Aligned_cols=158 Identities=24% Similarity=0.255 Sum_probs=110.5
Q ss_pred CccEEEccCCcccccCCcccc-ccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEEC
Q 045487 566 NLTTLGLGDNNLSGSLPMTLG-RLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSL 644 (729)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 644 (729)
.++.|++++|++++..+..+. ++++|+.|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 567777777777766666565 6777777777777777666666777777777777777777666666777777777777
Q ss_pred cCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccC---cCCCCCCEEeCCCCccccccccccccCCC--CCeeeccCC
Q 045487 645 SSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEI---GNLKAVVNIDLSWNRLSGNIPSTIVGLKN--LQRLSLKHN 719 (729)
Q Consensus 645 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~ls~n~~~~~~p~~l~~l~~--L~~l~l~~n 719 (729)
++|.+++..+..|..+++|+.|+|++|++++..+..+ ..+++|+.|+|++|++.+..+..+..++. ++.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 7777777777777777777777777777774333333 45777777777777777555566666665 377777777
Q ss_pred cccc
Q 045487 720 KLQG 723 (729)
Q Consensus 720 ~l~~ 723 (729)
++.+
T Consensus 200 ~~~C 203 (361)
T 2xot_A 200 PLEC 203 (361)
T ss_dssp CEEC
T ss_pred CccC
Confidence 7653
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=6.7e-18 Score=168.65 Aligned_cols=173 Identities=24% Similarity=0.374 Sum_probs=96.2
Q ss_pred hccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccC
Q 045487 512 LVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKL 591 (729)
Q Consensus 512 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 591 (729)
...+++|+.+++++|.+... + .+..++ ++++|++++|.+.+..+ +..+++|++|++++|++++ ++ .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~-~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLP-NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCC-CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 34567778888887776543 2 233333 56666666665554322 5555666666666666553 22 25555666
Q ss_pred ceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCC
Q 045487 592 QGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSN 671 (729)
Q Consensus 592 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 671 (729)
+.|++++|++++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 6666666655542 3455556666666666665533 345555666666666666555433 555566666666666
Q ss_pred cCcccCCccCcCCCCCCEEeCCCCcccc
Q 045487 672 SLNGSLPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 672 ~l~~~~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
.+++ ++ .+..+++|+.|++++|++..
T Consensus 189 ~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 5553 22 35555566666666665553
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=8e-18 Score=173.30 Aligned_cols=202 Identities=17% Similarity=0.127 Sum_probs=108.0
Q ss_pred hccCCCCcEEEccCCcccccCCcc-hhcCccccce-EecccCcccccCCccccCCCCccEEEccCCcccccCCccccccc
Q 045487 512 LVNCKSLKVIVLSENPLDGVLPSS-IGNHSVSVEE-IYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLK 589 (729)
Q Consensus 512 l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 589 (729)
+.++++|++|++++|.+.+.++.. +.... ++.+ +.+..|++....|..|..+++|++|++++|++.+..+..+....
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 128 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcch-hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccc
Confidence 344445555555555444333332 22222 3332 33344455555555666667777777777776654444444555
Q ss_pred cCceEecCC-CcccccCChhccCC-CCCCEEECcCCccccccChhhcCCCCCCEEECcC-CcCccCCChhhhccCCCCEE
Q 045487 590 KLQGLYLQN-NKFEGPIPQEFCHF-SRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSS-NELTSIIPSTFWNLEDILSF 666 (729)
Q Consensus 590 ~L~~L~l~~-n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 666 (729)
++..|++.+ +.+....+..+..+ ..++.|++++|+++...+..| ...+|+++++.+ |.++...++.|+.+++|++|
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 566666644 34443333444444 346667777777764333333 345667777764 44444444556677777777
Q ss_pred eCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCC
Q 045487 667 DFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHN 719 (729)
Q Consensus 667 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n 719 (729)
++++|+++...+.. +.+|+.|.+.++.-...+|. +..+++|+.+++.++
T Consensus 208 dLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 208 DISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred hcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 77777766332322 33455555555544445553 566677777776653
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=4.7e-18 Score=159.36 Aligned_cols=155 Identities=17% Similarity=0.257 Sum_probs=125.7
Q ss_pred cCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCE
Q 045487 562 GSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRI 641 (729)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 641 (729)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55678888999988887 555 57888899999999886653 347788899999999999998777888888999999
Q ss_pred EECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCcc
Q 045487 642 LSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKL 721 (729)
Q Consensus 642 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l 721 (729)
|++++|.+++..+..+..+++|++|++++|++.+.+| .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 9999999988788888899999999999998333555 68888999999999999985 33 678899999999999987
Q ss_pred cc
Q 045487 722 QG 723 (729)
Q Consensus 722 ~~ 723 (729)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 54
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.4e-17 Score=160.01 Aligned_cols=163 Identities=26% Similarity=0.287 Sum_probs=112.5
Q ss_pred CCCCCCCCCCccceeEeeCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCCCccCcccCCccccCCCCCceeeccCC
Q 045487 51 QNWTSNTSVCSWMGITCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLSHNWFSGTIPREIGNLTKLKELRLRYN 130 (729)
Q Consensus 51 ~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~ 130 (729)
..|..+...|+|.++.|.. .++ +.+|..+. ++|++|+|++|.+.+..+..|..+++|++|+|++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~--~~l-----------~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRS--KRH-----------ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTT--SCC-----------SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccC--CCc-----------CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 3455667889999999963 222 24454333 68899999999988888888888899999999999
Q ss_pred cCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccccccccccCCCcchhccCCCccEEEeeecCCcCCC
Q 045487 131 KLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPI 210 (729)
Q Consensus 131 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 210 (729)
.+....+..|.++++|++|++++|.+++..+..+..+ ++|++|++++|.++ .+
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l--------------------------~~L~~L~Ls~N~l~-~l 127 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL--------------------------VHLKELFMCCNKLT-EL 127 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------------------------TTCCEEECCSSCCC-SC
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc--------------------------hhhCeEeccCCccc-cc
Confidence 8875555667888888888888888772222222333 77777777777776 56
Q ss_pred CccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCc
Q 045487 211 PNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLI 255 (729)
Q Consensus 211 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 255 (729)
|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 128 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 666666666666666666666544455566666666666666554
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=157.88 Aligned_cols=154 Identities=18% Similarity=0.266 Sum_probs=107.9
Q ss_pred cEEEccCCcccccCCcchhcCccccceEecccCcccccCC-ccccCCCCccEEEccCCcccccCCccccccccCceEecC
Q 045487 519 KVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIP-KEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQ 597 (729)
Q Consensus 519 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 597 (729)
+.++++++.+.. +|..+. ..+++|++++|.+.+..+ ..+..+++|++|++++|++++..+..+.++++|++|+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCccc-CccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 467777776653 454432 256677777777766543 346677777777777777776666667777777777777
Q ss_pred CCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCccc
Q 045487 598 NNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGS 676 (729)
Q Consensus 598 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 676 (729)
+|.+++..+..+..+++|++|++++|++++..|..|..+++|++|++++|.+++..|..|..+++|+.|++++|++...
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 7777766666677777777777777777766677777777777777777777777777777777777777777777643
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2e-17 Score=157.70 Aligned_cols=152 Identities=24% Similarity=0.315 Sum_probs=114.0
Q ss_pred cEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCC
Q 045487 519 KVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQN 598 (729)
Q Consensus 519 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 598 (729)
+.++++++.+.. +|..+. .++++|++++|.+.+..+..|..+++|++|++++|++++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~-iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCc-CCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 567777776653 444332 3777888888877776666777778888888888888776677777788888888888
Q ss_pred CcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCc
Q 045487 599 NKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 599 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 674 (729)
|.++...+..|..+++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8887655555677788888888888888777777777888888888888887777777777788888888888775
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=9.9e-18 Score=167.40 Aligned_cols=187 Identities=20% Similarity=0.334 Sum_probs=147.9
Q ss_pred EEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccce
Q 045487 466 ALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEE 545 (729)
Q Consensus 466 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 545 (729)
.+.+..+.+.+.. ....+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+. +|+.
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--------~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~-~L~~ 94 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--------QGIQYLPNVTKLFLNGNKLTDIKP--LANLK-NLGW 94 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--------TTGGGCTTCCEEECCSSCCCCCGG--GTTCT-TCCE
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcccC--------hhHhcCCCCCEEEccCCccCCCcc--cccCC-CCCE
Confidence 3345555554432 255788899999999988776 457778899999999998876544 55555 8999
Q ss_pred EecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCcc
Q 045487 546 IYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKL 625 (729)
Q Consensus 546 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 625 (729)
|++++|.+.+ ++ .+..+++|++|++++|++++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++
T Consensus 95 L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 95 LFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 9999998765 33 388889999999999998853 4678889999999999998865 5788889999999999999
Q ss_pred ccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcc
Q 045487 626 SGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNG 675 (729)
Q Consensus 626 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 675 (729)
++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|+++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 86554 88889999999999998874 358888999999999998874
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=4.7e-17 Score=178.14 Aligned_cols=172 Identities=24% Similarity=0.366 Sum_probs=102.2
Q ss_pred cCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcC
Q 045487 460 NASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNH 539 (729)
Q Consensus 460 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 539 (729)
.+++|+.|++++|.+... + .+..+++|+.|++++|++... ..+..+++|+.|++++|.+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~--------~~l~~l~~L~~L~Ls~N~l~---------- 100 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI--------KPLTNLKNLGWLFLDENKIK---------- 100 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCC--------GGGGGCTTCCEEECCSSCCC----------
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCC--------hhhccCCCCCEEECcCCCCC----------
Confidence 445555555555555432 1 344555555555555555443 12444455555555544433
Q ss_pred ccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEE
Q 045487 540 SVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVD 619 (729)
Q Consensus 540 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 619 (729)
+ +| .+..+++|+.|++++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+
T Consensus 101 ---------------~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 101 ---------------D-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp ---------------C-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred ---------------C-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 2 12 355666777777777776642 3466677777777777777654 4566677777777
Q ss_pred CcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCccc
Q 045487 620 MNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGS 676 (729)
Q Consensus 620 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 676 (729)
|++|++.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+.
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77777765544 66677777777777777653 3566677777777777776643
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2.9e-17 Score=179.76 Aligned_cols=189 Identities=22% Similarity=0.319 Sum_probs=141.6
Q ss_pred EEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccce
Q 045487 466 ALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEE 545 (729)
Q Consensus 466 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 545 (729)
.+.+..+.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l--------~~l~~l~~L~~L~Ls~N~l~---------------- 78 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--------QGIQYLPNVTKLFLNGNKLT---------------- 78 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC--------TTGGGCTTCCEEECTTSCCC----------------
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC--------hHHccCCCCCEEEeeCCCCC----------------
Confidence 33444444443322 44566666666666665554 33455555555555555443
Q ss_pred EecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCcc
Q 045487 546 IYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKL 625 (729)
Q Consensus 546 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 625 (729)
+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|++
T Consensus 79 ---------~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 79 ---------DIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI 143 (605)
T ss_dssp ---------CCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ---------CChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCcc
Confidence 3222 6778899999999999984 33 688899999999999999863 4688899999999999999
Q ss_pred ccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccccc
Q 045487 626 SGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNI 701 (729)
Q Consensus 626 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~ 701 (729)
++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+..
T Consensus 144 ~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 144 TDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 865 568899999999999999988766 88999999999999999853 36888999999999999998653
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.6e-18 Score=195.01 Aligned_cols=229 Identities=21% Similarity=0.214 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHhhccCCCCCCcccCCCCC-CCCCCccceeEeeCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEeCC
Q 045487 26 ISRDQDALLSVKAHIINDNPRNILAQNWTS-NTSVCSWMGITCDIYGNRVTSLTIPDLGLTGTIPSYLGNLSSLQTLVLS 104 (729)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls 104 (729)
...++++++++..+.. .+.......|.. .+..+.|.++.+. ..+++.+++.++.+.. .+.. .++.++|+
T Consensus 130 ~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls 199 (727)
T 4b8c_D 130 VDCTKQALMEMADTLT--DSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDE-ANQA-----LLQHKKLS 199 (727)
T ss_dssp --CCCHHHHHHHHHHH--HHHTTC--------------------------------------------------------
T ss_pred cccchhhhhhhhhhcc--cccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCc-chhh-----HhhcCccC
Confidence 3456778888887763 111111134533 3455779888775 5788999988877664 2332 33444555
Q ss_pred CccCcccCCccccCCCCCceeeccCCcCCCcCcccccCCCCCCEEEccCCcCCCCCCccccccccccccccccccccccC
Q 045487 105 HNWFSGTIPREIGNLTKLKELRLRYNKLQGEIPEELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGS 184 (729)
Q Consensus 105 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ll~~L~l~~~~~~~~ 184 (729)
.+.+. .++++.|.+. ..|..+..++.|++|+|++|.+. .+|..++++
T Consensus 200 ~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l----------------- 246 (727)
T 4b8c_D 200 QYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKY----------------- 246 (727)
T ss_dssp -------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC-----------------
T ss_pred ccccc--------------Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCC-----------------
Confidence 44433 1233333333 34455555566666666665555 444444433
Q ss_pred CCcchhccCCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCcCcccCChhhhC
Q 045487 185 FPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNNLIGEIPEELGN 264 (729)
Q Consensus 185 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 264 (729)
++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|+|++|.+. .+|..+++
T Consensus 247 ---------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~ 314 (727)
T 4b8c_D 247 ---------DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN 314 (727)
T ss_dssp ---------CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS
T ss_pred ---------CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhc
Confidence 44444444444444 44555555555555555555555 44555555555555555555554 44555566
Q ss_pred CCCCcEEEeecCcCccccChhhhhhccccceEEcccCcccccCCc
Q 045487 265 LAELEMLVLTSNLLTGAIPASIFNLSSMLTALDFTNNSLTGSFPD 309 (729)
Q Consensus 265 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 309 (729)
+++|++|++++|.+++.+|..+.........+++++|.+.+.+|.
T Consensus 315 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 666666666666666555555444332233455666666555544
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.4e-17 Score=170.42 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=85.5
Q ss_pred ccceEecccCcccccCCcccc-CCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEEC
Q 045487 542 SVEEIYMYKCNIHGRIPKEIG-SLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDM 620 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 620 (729)
.++.|++++|.+.+..+..+. .+++|++|++++|++++..+..|.++++|+.|++++|+++...+..|..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 344455555554444444444 5556666666666665544455555666666666666655544445555566666666
Q ss_pred cCCccccccChhhcCCCCCCEEECcCCcCccCCChhh---hccCCCCEEeCCCCcCcccCCccCcCCCC--CCEEeCCCC
Q 045487 621 NGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTF---WNLEDILSFDFSSNSLNGSLPLEIGNLKA--VVNIDLSWN 695 (729)
Q Consensus 621 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~ls~n 695 (729)
++|++++..+..|..+++|++|++++|.+++..+..| ..+++|+.|+|++|++++..+..+..++. ++.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 6666655555555666666666666666655433333 34556666666666665433344444444 255666665
Q ss_pred ccc
Q 045487 696 RLS 698 (729)
Q Consensus 696 ~~~ 698 (729)
++.
T Consensus 200 ~~~ 202 (361)
T 2xot_A 200 PLE 202 (361)
T ss_dssp CEE
T ss_pred Ccc
Confidence 553
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=4e-17 Score=153.00 Aligned_cols=150 Identities=15% Similarity=0.205 Sum_probs=120.0
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECc
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMN 621 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 621 (729)
+++.|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5666666666555 344 4777889999999999665 23467889999999999999988778888899999999999
Q ss_pred CCccccccChhhcCCCCCCEEECcCCc-CccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccc
Q 045487 622 GNKLSGSIPSCLGDLNSLRILSLSSNE-LTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 622 ~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
+|++++..+..+..+++|++|++++|. ++. +| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 999998788888999999999999998 554 44 68889999999999999985 44 78888999999999999864
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.7e-17 Score=161.44 Aligned_cols=167 Identities=25% Similarity=0.300 Sum_probs=84.5
Q ss_pred CCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEec
Q 045487 517 SLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYL 596 (729)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (729)
++..++++++.+.+.. .+..+. +++.|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3444455555544322 222222 55555555555442 33 35555555555555555553322 555555555555
Q ss_pred CCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCccc
Q 045487 597 QNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGS 676 (729)
Q Consensus 597 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 676 (729)
++|++++. +. +.. ++|++|++++|++++. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 55555532 21 122 5555555555555532 2 355555555555555555543 2455555555555555555533
Q ss_pred CCccCcCCCCCCEEeCCCCcccc
Q 045487 677 LPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 677 ~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
..+..+++|+.|++++|.+..
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEEC
T ss_pred --HHhccCCCCCEEeCCCCcccC
Confidence 345555555555555555553
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.5e-16 Score=146.64 Aligned_cols=157 Identities=18% Similarity=0.306 Sum_probs=126.3
Q ss_pred cEEEccCCcccccCCccccccccCceEecCCCcccccCCh-hccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcC
Q 045487 568 TTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQ-EFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSS 646 (729)
Q Consensus 568 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 646 (729)
+++++++++++ .+|..+. +++++|++++|.+++..+. .+..+++|++|++++|++++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999996 6676553 3899999999999876654 488899999999999999988889999999999999999
Q ss_pred CcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccccCCC
Q 045487 647 NELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQGPIP 726 (729)
Q Consensus 647 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 726 (729)
|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|++.+..+... -...++...+.++...+..|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCC
Confidence 99999888889999999999999999998889999999999999999999987654211 01123333445555555555
Q ss_pred CC
Q 045487 727 ES 728 (729)
Q Consensus 727 ~~ 728 (729)
..
T Consensus 167 ~~ 168 (192)
T 1w8a_A 167 SK 168 (192)
T ss_dssp TT
T ss_pred hH
Confidence 43
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.8e-16 Score=147.57 Aligned_cols=176 Identities=24% Similarity=0.336 Sum_probs=137.6
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCc-cccccccCceEecCCCcccccCChhccCCCCCCEEEC
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPM-TLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDM 620 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 620 (729)
..+.++++++.+ +.+|..+. .++++|++++|++++..+. .++.+++|++|++++|++++..|..+..+++|++|++
T Consensus 9 ~~~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 9 EGTTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp ETTEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 347889999887 45776553 3899999999999866654 4899999999999999999988999999999999999
Q ss_pred cCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccc
Q 045487 621 NGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGN 700 (729)
Q Consensus 621 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~ 700 (729)
++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++.+..+.... ...++...+..+...-.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCG 164 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCC
Confidence 99999988888899999999999999999999999999999999999999999865542110 01122223444444434
Q ss_pred cccccccCCCCCeeeccCCccccC
Q 045487 701 IPSTIVGLKNLQRLSLKHNKLQGP 724 (729)
Q Consensus 701 ~p~~l~~l~~L~~l~l~~n~l~~~ 724 (729)
.|.. +......++..+.+.+.
T Consensus 165 ~P~~---l~~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 165 APSK---VRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp SSTT---TTTSBGGGSCTTTCCCC
T ss_pred CChH---HcCCChhhCcHhhcCcC
Confidence 4544 34455666777777554
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.5e-16 Score=143.47 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=68.0
Q ss_pred CCccEEEccCCccc-ccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEE
Q 045487 565 INLTTLGLGDNNLS-GSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILS 643 (729)
Q Consensus 565 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 643 (729)
++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 44555556666666666666665543 4455555555555555555544454444455555555
Q ss_pred CcCCcCccCC-ChhhhccCCCCEEeCCCCcCcccCC---ccCcCCCCCCEEeCCCCccc
Q 045487 644 LSSNELTSII-PSTFWNLEDILSFDFSSNSLNGSLP---LEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 644 l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~ls~n~~~ 698 (729)
+++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555554431 1344444444444444444443222 23344444444444444443
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1e-16 Score=157.37 Aligned_cols=124 Identities=23% Similarity=0.347 Sum_probs=101.4
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECc
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMN 621 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 621 (729)
+|++|++++|.+.+.. . +..+++|++|++++|++++ ++. +.. ++|+.|++++|++++. ..+..+++|+.|+++
T Consensus 64 ~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 64 NLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIR 136 (263)
T ss_dssp TCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECT
T ss_pred CCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECC
Confidence 4555555555544332 3 7788999999999999985 343 333 8999999999999864 468899999999999
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCccc
Q 045487 622 GNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGS 676 (729)
Q Consensus 622 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 676 (729)
+|++++. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 137 ~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 137 NNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999964 3 688999999999999999987 7789999999999999999855
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.8e-18 Score=186.75 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=77.6
Q ss_pred cCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCC
Q 045487 590 KLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFS 669 (729)
Q Consensus 590 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 669 (729)
.|+.|++++|.+++ +|. ++.+++|+.|++++|+++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 35666666666664 343 666666666666666666 556666666667777777666665 44 66666677777777
Q ss_pred CCcCcccC-CccCcCCCCCCEEeCCCCccccccccc---cccCCCCCeeec
Q 045487 670 SNSLNGSL-PLEIGNLKAVVNIDLSWNRLSGNIPST---IVGLKNLQRLSL 716 (729)
Q Consensus 670 ~n~l~~~~-~~~l~~l~~L~~L~ls~n~~~~~~p~~---l~~l~~L~~l~l 716 (729)
+|++++.. |..+..+++|+.|++++|++++..|.. +..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77766554 666666777777777777776544321 233667777653
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.4e-16 Score=160.80 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=69.5
Q ss_pred cccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCC-EEECcCCcCccCCChhhhccCCCCEE
Q 045487 588 LKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLR-ILSLSSNELTSIIPSTFWNLEDILSF 666 (729)
Q Consensus 588 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L 666 (729)
+++|+.+++++|+++......|.++++|+++++.+| +....+.+|.+|++|+ .+++.+ .++.+.+.+|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566777777766666555556666677777777666 5545556677777777 777766 6666666777777777777
Q ss_pred eCCCCcCcccCCccCcCCCCCCEEeC
Q 045487 667 DFSSNSLNGSLPLEIGNLKAVVNIDL 692 (729)
Q Consensus 667 ~L~~n~l~~~~~~~l~~l~~L~~L~l 692 (729)
++++|.++...+.+|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 77777776666666777777776653
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.4e-16 Score=141.82 Aligned_cols=137 Identities=22% Similarity=0.176 Sum_probs=98.9
Q ss_pred cccCceEecCCCccc-ccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEE
Q 045487 588 LKKLQGLYLQNNKFE-GPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSF 666 (729)
Q Consensus 588 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 666 (729)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 366777888887776 56666667777788888888877754 566777778888888887777677777777778888
Q ss_pred eCCCCcCcccC-CccCcCCCCCCEEeCCCCccccccc---cccccCCCCCeeeccCCccccCCCC
Q 045487 667 DFSSNSLNGSL-PLEIGNLKAVVNIDLSWNRLSGNIP---STIVGLKNLQRLSLKHNKLQGPIPE 727 (729)
Q Consensus 667 ~L~~n~l~~~~-~~~l~~l~~L~~L~ls~n~~~~~~p---~~l~~l~~L~~l~l~~n~l~~~~p~ 727 (729)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.. +|+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence 88888776432 2567777778888888887775444 366777778888888877755 444
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=7.7e-18 Score=183.30 Aligned_cols=197 Identities=18% Similarity=0.133 Sum_probs=141.3
Q ss_pred ccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCc
Q 045487 513 VNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQ 592 (729)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 592 (729)
..+++|+.|++++|.+. .+|..+..+. +|++|++++|......|.. +..+...+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence 34566666777766654 4455555554 5555555443311111100 001113445566667777777
Q ss_pred eEe-cCCCcccccCCh-----hccC--CCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCC
Q 045487 593 GLY-LQNNKFEGPIPQ-----EFCH--FSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDIL 664 (729)
Q Consensus 593 ~L~-l~~n~l~~~~~~-----~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 664 (729)
.|+ ++.|.+...... .+.. ...|+.|++++|++++ +|. +..+++|+.|++++|.++ .+|..+..+++|+
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 489 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred cCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence 777 555543211000 1111 1369999999999995 666 999999999999999999 6899999999999
Q ss_pred EEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccccc-ccccccCCCCCeeeccCCccccCCCC
Q 045487 665 SFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNI-PSTIVGLKNLQRLSLKHNKLQGPIPE 727 (729)
Q Consensus 665 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~-p~~l~~l~~L~~l~l~~n~l~~~~p~ 727 (729)
.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++|++++.+|.
T Consensus 490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 99999999996 67 8999999999999999999887 99999999999999999999996653
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=6e-16 Score=137.76 Aligned_cols=127 Identities=18% Similarity=0.165 Sum_probs=74.0
Q ss_pred ccCceEecCCCccc-ccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEe
Q 045487 589 KKLQGLYLQNNKFE-GPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFD 667 (729)
Q Consensus 589 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 667 (729)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 34444445555555555555555533 4455556666666666666655555555566666666
Q ss_pred CCCCcCccc-CCccCcCCCCCCEEeCCCCccccccc---cccccCCCCCeeecc
Q 045487 668 FSSNSLNGS-LPLEIGNLKAVVNIDLSWNRLSGNIP---STIVGLKNLQRLSLK 717 (729)
Q Consensus 668 L~~n~l~~~-~~~~l~~l~~L~~L~ls~n~~~~~~p---~~l~~l~~L~~l~l~ 717 (729)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 23556666666666666666665444 356666777777665
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3.5e-16 Score=159.57 Aligned_cols=228 Identities=14% Similarity=0.057 Sum_probs=139.8
Q ss_pred CCCcchhcc--------CCCccEEEeeecCCcCCCCccccccCCCCeEeccccccCCCCCccccCCCCCCEEEcccCc--
Q 045487 184 SFPDDMCEG--------LPRLKGLYVSYNQFKGPIPNNLWHCKGLSSASLSFNQFTGRLPRDLGNLTRLKSLYLGFNN-- 253 (729)
Q Consensus 184 ~~~~~~~~~--------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-- 253 (729)
.+|..+|.+ +++|+.|++.. .++...+.+|..|++|+.+++.+|.+....+.+|.++.++..+......
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 345555555 67788887777 6665556667777888888887777766666667776666666554421
Q ss_pred --CcccCChhhhCCCCCc-EEEeecCcCccccChhhhhh---ccccceEEcccCcccccCCchhhccCCCCcEEEccccc
Q 045487 254 --LIGEIPEELGNLAELE-MLVLTSNLLTGAIPASIFNL---SSMLTALDFTNNSLTGSFPDDTCHGLPRLKGLYMSYNQ 327 (729)
Q Consensus 254 --~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 327 (729)
........+.++..|+ .+.+... +.++..+... ...++.+.+.++-.. .....+...+++|+.+++++|.
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBC
T ss_pred hccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCC
Confidence 1112233455666666 4444332 1233333221 222555555543211 1111122235667788887777
Q ss_pred cCCCCCCCCCCCCCCCEEEccccccccccCcCccCCCCCc-EEEeeCccccccccccccCCCCccEEEcccccceeeCCc
Q 045487 328 FKGPIPNNLWHCKDLSTVSLSFNQFTGRIPRDLGNSTKLK-SLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPD 406 (729)
Q Consensus 328 ~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 406 (729)
++......|..+++|+++++.++ +....+.+|..+++|+ .+.+.+ .+....+.+|.++++|+.++++.+.+....+.
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence 77666667777778888888776 5555666777777787 777776 55555566777777777777777777777777
Q ss_pred cccCCCCCcEEE
Q 045487 407 TILNISTLKILS 418 (729)
Q Consensus 407 ~~~~l~~L~~L~ 418 (729)
+|.++++|+.+.
T Consensus 316 aF~~~~~L~~ly 327 (329)
T 3sb4_A 316 LFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTCCCCEEE
T ss_pred hhcCCcchhhhc
Confidence 777777777765
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.9e-15 Score=139.23 Aligned_cols=128 Identities=24% Similarity=0.396 Sum_probs=106.8
Q ss_pred cEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCC
Q 045487 568 TTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSN 647 (729)
Q Consensus 568 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 647 (729)
+.++++++.++ .+|..+ .++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888887 566554 358889999999888 66778888889999999999998777788888899999999999
Q ss_pred cCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCcccc
Q 045487 648 ELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 648 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9988888888888999999999999886666668888889999999888863
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=7.4e-16 Score=137.18 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=83.8
Q ss_pred CCccEEEccCCccc-ccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEE
Q 045487 565 INLTTLGLGDNNLS-GSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILS 643 (729)
Q Consensus 565 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 643 (729)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46666677776666 45566666666777777777766644 5566667777777777777655666666667777777
Q ss_pred CcCCcCccC-CChhhhccCCCCEEeCCCCcCcccCC---ccCcCCCCCCEEeCC
Q 045487 644 LSSNELTSI-IPSTFWNLEDILSFDFSSNSLNGSLP---LEIGNLKAVVNIDLS 693 (729)
Q Consensus 644 l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~ls 693 (729)
+++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777776653 23566667777777777777765444 356667777777765
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=2.5e-16 Score=177.15 Aligned_cols=177 Identities=20% Similarity=0.219 Sum_probs=72.0
Q ss_pred CCCcEEEccCCcccccCCcchhcCccccceEecccCcccc---------cCCccccCCCCccEEEccCCcccccCCcccc
Q 045487 516 KSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHG---------RIPKEIGSLINLTTLGLGDNNLSGSLPMTLG 586 (729)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 586 (729)
+.++.+++.++.+... +.. .++.++++.+.+.+ ..+..+..+++|+.|+|++|.+. .+|..+.
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~------~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA------LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF 244 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred CccceEEeeCCCCCcc-hhh------HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence 4567777777766542 222 22333333332211 22344455555555555555555 3444444
Q ss_pred ccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEE
Q 045487 587 RLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSF 666 (729)
Q Consensus 587 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 666 (729)
.+++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..|..+++|++|+|++|.++ .+|..|..+++|+.|
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 5555555555555555 44555555555555555555555 44555555555555555555554 344455555555555
Q ss_pred eCCCCcCcccCCccCcCCC-CCCEEeCCCCcccccccc
Q 045487 667 DFSSNSLNGSLPLEIGNLK-AVVNIDLSWNRLSGNIPS 703 (729)
Q Consensus 667 ~L~~n~l~~~~~~~l~~l~-~L~~L~ls~n~~~~~~p~ 703 (729)
+|++|++++.+|..+..+. ....+++++|.+++.+|.
T Consensus 322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 5555555555554443321 112245555555554443
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.6e-15 Score=136.29 Aligned_cols=134 Identities=21% Similarity=0.265 Sum_probs=108.4
Q ss_pred CccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECc
Q 045487 566 NLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLS 645 (729)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 645 (729)
+.+.+++++++++ .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3567888888887 455443 3688999999999887666677888899999999999887666777888899999999
Q ss_pred CCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccc
Q 045487 646 SNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIP 702 (729)
Q Consensus 646 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p 702 (729)
+|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999988777778888899999999998886655556788889999999998886554
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=134.11 Aligned_cols=129 Identities=25% Similarity=0.355 Sum_probs=108.3
Q ss_pred cceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcC
Q 045487 543 VEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNG 622 (729)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 622 (729)
-+.++++++.+. .+|..+ .+++++|++++|+++ .+|..+.++++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 12 ~~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 356777777765 456544 358999999999988 6778888899999999999999987777888899999999999
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcc
Q 045487 623 NKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNG 675 (729)
Q Consensus 623 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 675 (729)
|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99998888888999999999999999988777788889999999999998863
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=2e-13 Score=142.84 Aligned_cols=147 Identities=12% Similarity=0.075 Sum_probs=104.6
Q ss_pred ccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCC
Q 045487 559 KEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNS 638 (729)
Q Consensus 559 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 638 (729)
..+..+..++.+.+..+... .....+..+..++.+......+. ...+..+.+|+.+.+.++ +......+|.+|++
T Consensus 247 ~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS 321 (394)
T ss_dssp STTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCC
Confidence 34666777777777766443 44556777788887777665433 235667788888888765 55455677888888
Q ss_pred CCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCee
Q 045487 639 LRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRL 714 (729)
Q Consensus 639 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l 714 (729)
|+.+++.. .++.+...+|..|++|+.+++..+ ++.....+|.++++|+.+++..+- . .+...|.++++|+.+
T Consensus 322 L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 322 LVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred CCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 88888874 477777788888888888888776 655666788888888888887653 2 334667888887764
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2.4e-14 Score=131.48 Aligned_cols=134 Identities=24% Similarity=0.284 Sum_probs=95.5
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECc
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMN 621 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 621 (729)
+.+.++++++.+.. +|..+ .++|++|++++|++++..+..++.+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 34566776666543 44322 3577888888888776555666777888888888888776665666777788888888
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCC
Q 045487 622 GNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLP 678 (729)
Q Consensus 622 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 678 (729)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 888876666667777888888888888877666667777888888888887765443
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=3.8e-13 Score=139.76 Aligned_cols=264 Identities=13% Similarity=0.155 Sum_probs=149.7
Q ss_pred CCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcE
Q 045487 411 ISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKR 490 (729)
Q Consensus 411 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 490 (729)
+..++.+.+.+. +.. ++ ...+.++ +|+.+.+..+ ++......+.++ +|+.+.+.+ .+.......|.+|++|+.
T Consensus 112 ~~~l~~i~ip~~-i~~-I~-~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKS-IP-KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CCE-EC-TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cCE-eh-HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 466677766653 221 11 1223333 5777776654 443334444443 566666664 444444455666666666
Q ss_pred EeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEE
Q 045487 491 LGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTL 570 (729)
Q Consensus 491 L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 570 (729)
+++.+++++.... ..+. +.+|+.+.+..+ +...-..+|..+++|+.+
T Consensus 185 l~l~~n~l~~I~~------~aF~-~~~L~~l~lp~~--------------------------l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 185 ADLSKTKITKLPA------STFV-YAGIEEVLLPVT--------------------------LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp EECTTSCCSEECT------TTTT-TCCCSEEECCTT--------------------------CCEECTTTTTTCTTCCCE
T ss_pred eecCCCcceEech------hhEe-ecccCEEEeCCc--------------------------hheehhhHhhCCCCCCEE
Confidence 6666665554432 1222 345555555432 222223446666666666
Q ss_pred EccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccc-----cccChhhcCCCCCCEEECc
Q 045487 571 GLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLS-----GSIPSCLGDLNSLRILSLS 645 (729)
Q Consensus 571 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~l~~l~~L~~L~l~ 645 (729)
++.++ ++.....+|.+ .+|+.+.+. +.++......|.++++|+.+++.++.+. ...+.+|.+|++|+.+++.
T Consensus 232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 66653 33334445555 566666663 3344444556666677777777666543 3445667777777777777
Q ss_pred CCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCC-CCCeeeccCCc
Q 045487 646 SNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLK-NLQRLSLKHNK 720 (729)
Q Consensus 646 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~-~L~~l~l~~n~ 720 (729)
+.++.+...+|..|++|+.++|..+ ++...+.+|.++ +|+.+++++|......+..|..++ .++.+.+..+.
T Consensus 309 -~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 309 -ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 3466666677777777777777544 544555666666 777777777776655556666663 56667666553
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=1.5e-14 Score=132.65 Aligned_cols=133 Identities=16% Similarity=0.156 Sum_probs=73.7
Q ss_pred ccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCC
Q 045487 561 IGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLR 640 (729)
Q Consensus 561 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 640 (729)
+..+++|++|++++|+++. ++......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4455666666666666663 333222223666666666666643 4555566666666666666644434445566666
Q ss_pred EEECcCCcCccCCCh--hhhccCCCCEEeCCCCcCcccCCcc----CcCCCCCCEEeCCCCccc
Q 045487 641 ILSLSSNELTSIIPS--TFWNLEDILSFDFSSNSLNGSLPLE----IGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 641 ~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~ls~n~~~ 698 (729)
+|++++|.++. +|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666666643 333 4555566666666666655 33332 455555555555555554
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=2.5e-16 Score=147.66 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=106.6
Q ss_pred CCCccEEEccCCcccccCCc------cccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCC
Q 045487 564 LINLTTLGLGDNNLSGSLPM------TLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLN 637 (729)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 637 (729)
...++.++++++.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34455555555555555444 67777777777777777775 45 6677777888888888777 5666666667
Q ss_pred CCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCC-ccCcCCCCCCEEeCCCCccccccccc----------cc
Q 045487 638 SLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLP-LEIGNLKAVVNIDLSWNRLSGNIPST----------IV 706 (729)
Q Consensus 638 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~ls~n~~~~~~p~~----------l~ 706 (729)
+|++|++++|.+++. | .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++.+..|.. +.
T Consensus 94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 788888888877763 3 57777888888888888774322 35777788888888888887665543 67
Q ss_pred cCCCCCeeeccCCcccc
Q 045487 707 GLKNLQRLSLKHNKLQG 723 (729)
Q Consensus 707 ~l~~L~~l~l~~n~l~~ 723 (729)
.+++|++|+ +|++..
T Consensus 172 ~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HCSSCSEEC--CGGGTT
T ss_pred hCCCcEEEC--CcccCH
Confidence 788888887 666543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.2e-14 Score=129.62 Aligned_cols=133 Identities=19% Similarity=0.207 Sum_probs=103.9
Q ss_pred cccccccCceEecCCCcccccCChhccCC-CCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCC
Q 045487 584 TLGRLKKLQGLYLQNNKFEGPIPQEFCHF-SRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLED 662 (729)
Q Consensus 584 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 662 (729)
.+..+++|+.|++++|.++. ++. +..+ ++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45667888888888888884 343 4444 4888889988888864 56788888888898888888766666688888
Q ss_pred CCEEeCCCCcCcccCCc--cCcCCCCCCEEeCCCCccccccccc----cccCCCCCeeeccCCccc
Q 045487 663 ILSFDFSSNSLNGSLPL--EIGNLKAVVNIDLSWNRLSGNIPST----IVGLKNLQRLSLKHNKLQ 722 (729)
Q Consensus 663 L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~ls~n~~~~~~p~~----l~~l~~L~~l~l~~n~l~ 722 (729)
|+.|++++|++. .+|. .+..+++|+.|++++|++. .+|.. +..+++|++|++++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888899888886 4554 6788888888888888887 45553 788888888888888653
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=2.1e-12 Score=134.24 Aligned_cols=247 Identities=12% Similarity=0.078 Sum_probs=177.1
Q ss_pred CCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCC
Q 045487 437 LPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCK 516 (729)
Q Consensus 437 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~ 516 (729)
+..++.+.+... ++......+.++ +|+.+.+.++ +.......|.++ +|+.+.+.. .++.... .++..|+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~------~aF~~c~ 180 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE------DIFYYCY 180 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS------STTTTCT
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH------HHhhCcc
Confidence 456667766643 333334445554 6777777655 444444556553 577776654 3333211 4455666
Q ss_pred CCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEec
Q 045487 517 SLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYL 596 (729)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (729)
+|+.+++++|.+. ..-...|. +.+|+.+.+.++ +......+|.+|++|+.+++
T Consensus 181 ~L~~l~l~~n~l~-------------------------~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 181 NLKKADLSKTKIT-------------------------KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TCCEEECTTSCCS-------------------------EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred cCCeeecCCCcce-------------------------EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 6666666555433 22233344 578999999854 66566788999999999999
Q ss_pred CCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCc-----cCCChhhhccCCCCEEeCCCC
Q 045487 597 QNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELT-----SIIPSTFWNLEDILSFDFSSN 671 (729)
Q Consensus 597 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n 671 (729)
..+ ++......|.+ .+|+.+++ .+.++.....+|.+|++|+.+++.+|.+. ...+.+|..|++|+.+++. +
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred CCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 875 55555667777 78999999 45567677889999999999999988765 5677899999999999999 4
Q ss_pred cCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCCccccCCCC
Q 045487 672 SLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHNKLQGPIPE 727 (729)
Q Consensus 672 ~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~ 727 (729)
.++.....+|.++++|+.++|..+ +....+.+|.++ +|+.+++.+|......+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 577677788999999999999665 776778899999 999999999987654333
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=3.8e-12 Score=133.14 Aligned_cols=150 Identities=17% Similarity=0.113 Sum_probs=120.0
Q ss_pred cCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCE
Q 045487 562 GSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRI 641 (729)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 641 (729)
....+|+.+.+.+.. +......+.++..++.+.+..+... .....+..+..++.+......+ ...+|..+.+|+.
T Consensus 227 ~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~ 301 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTE 301 (394)
T ss_dssp TTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCE
T ss_pred cccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccc
Confidence 344678888876543 3244567888999999999877544 5566788889999998877653 3457889999999
Q ss_pred EECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCC
Q 045487 642 LSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHN 719 (729)
Q Consensus 642 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n 719 (729)
+.+..+ ++.+...+|..+++|+.++|..+ ++.....+|.++++|+.+++..+ +......+|.+|++|+.+++..+
T Consensus 302 i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 302 VKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 999864 77778889999999999999755 66566788999999999999877 77677889999999999999765
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=4.2e-13 Score=121.78 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=87.8
Q ss_pred cCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCC
Q 045487 590 KLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFS 669 (729)
Q Consensus 590 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 669 (729)
+.+.+++++|.++ .+|..+. ++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3577888888887 4565543 778888888888887778888888888888888888888777778888888888888
Q ss_pred CCcCcccCCccCcCCCCCCEEeCCCCccccc
Q 045487 670 SNSLNGSLPLEIGNLKAVVNIDLSWNRLSGN 700 (729)
Q Consensus 670 ~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~ 700 (729)
+|++++..+..+..+++|++|+|++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8888876666788888888888888888744
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.4e-15 Score=142.51 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=103.3
Q ss_pred cccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCC
Q 045487 560 EIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSL 639 (729)
Q Consensus 560 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 639 (729)
.+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 67778888888888888875 55 7788888888888888887 566667777888888888888885 44 57778888
Q ss_pred CEEECcCCcCccCCC-hhhhccCCCCEEeCCCCcCcccCCcc----------CcCCCCCCEEeCCCCcccc
Q 045487 640 RILSLSSNELTSIIP-STFWNLEDILSFDFSSNSLNGSLPLE----------IGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 640 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----------l~~l~~L~~L~ls~n~~~~ 699 (729)
++|++++|.+++..+ ..+..+++|++|++++|++.+..|.. +..+++|+.|| ++.++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 888888888876432 46788888888888888887665542 67788888887 666653
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.1e-12 Score=119.45 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=85.2
Q ss_pred ceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCC
Q 045487 592 QGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSN 671 (729)
Q Consensus 592 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 671 (729)
+.+++++|.++ .+|..+. ++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 5566553 78888888888888777888888888888888888888876777788888888888888
Q ss_pred cCcccCCccCcCCCCCCEEeCCCCcccc
Q 045487 672 SLNGSLPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 672 ~l~~~~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
++++..+..+..+++|+.|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8886555568888888888888888873
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=2.4e-12 Score=116.83 Aligned_cols=108 Identities=27% Similarity=0.354 Sum_probs=96.1
Q ss_pred CccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECc
Q 045487 566 NLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLS 645 (729)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 645 (729)
+.+.+++++|.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999998 466655 3789999999999998888889999999999999999998777788999999999999
Q ss_pred CCcCccCCChhhhccCCCCEEeCCCCcCccc
Q 045487 646 SNELTSIIPSTFWNLEDILSFDFSSNSLNGS 676 (729)
Q Consensus 646 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 676 (729)
+|.+++..+..|..+++|+.|+|++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999988888899999999999999999744
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=3.7e-14 Score=145.93 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=95.0
Q ss_pred CCccEEEccCCcccccCCcc-ccccccCceEecCCCcccccCChhcc-----CCCCCCEEECcCCccccc----cChhhc
Q 045487 565 INLTTLGLGDNNLSGSLPMT-LGRLKKLQGLYLQNNKFEGPIPQEFC-----HFSRLYEVDMNGNKLSGS----IPSCLG 634 (729)
Q Consensus 565 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~ 634 (729)
++|++|++++|.++...... ...+++|+.|++++|.+++.....++ ..++|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 56777777777765332222 23456677777777777654333332 346777777777777642 334446
Q ss_pred CCCCCCEEECcCCcCccCC----ChhhhccCCCCEEeCCCCcCccc----CCccCcCCCCCCEEeCCCCccccccccccc
Q 045487 635 DLNSLRILSLSSNELTSII----PSTFWNLEDILSFDFSSNSLNGS----LPLEIGNLKAVVNIDLSWNRLSGNIPSTIV 706 (729)
Q Consensus 635 ~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~ 706 (729)
.+++|++|+|++|.+++.. +..+...++|++|+|++|.+++. ++..+...++|++|+|++|.+++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 6777888888887776543 44556667788888888877642 333444567788888888887766555554
Q ss_pred cCC--C---CCeee--ccCCcc
Q 045487 707 GLK--N---LQRLS--LKHNKL 721 (729)
Q Consensus 707 ~l~--~---L~~l~--l~~n~l 721 (729)
.+. . |+.+. +.+|.+
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HCC------CEEECCCC----C
T ss_pred HHhcCCCccchhhHhhhcCCcc
Confidence 431 1 55665 555544
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=1.4e-10 Score=121.18 Aligned_cols=331 Identities=13% Similarity=0.086 Sum_probs=155.8
Q ss_pred CCCCCCCCCC-CCCEEEccccccccccCcCccCCCCCcEEEeeCcc---ccccccccccCCCCccEEEcccccceeeCCc
Q 045487 331 PIPNNLWHCK-DLSTVSLSFNQFTGRIPRDLGNSTKLKSLHLGLNN---LIGEIPQEIGNLRNLEILGIDQSNLVGFVPD 406 (729)
Q Consensus 331 ~~~~~l~~~~-~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 406 (729)
....+|..++ .|+.+.+..+ ++.....+|.++.+|+.+.+..+. +......+|..+..|+.+.+.. .+......
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhh
Confidence 3445666664 5888888764 554556778888888888887653 4433455667777777666543 24444455
Q ss_pred cccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccC
Q 045487 407 TILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLR 486 (729)
Q Consensus 407 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 486 (729)
.|..+.+|+.+.+..+... + ....+..+..|+.+.+..+ +.......+ ....|+.+.+..+.. ......+..+.
T Consensus 132 aF~~c~~L~~i~lp~~~~~--I-~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~-~i~~~af~~c~ 205 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGVTS--V-ADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVT-RIGTNAFSECF 205 (394)
T ss_dssp TTTTCTTCCEEECCTTCCE--E-CTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCC-EECTTTTTTCT
T ss_pred hhhhhcccccccccceeee--e-cccceecccccccccccce-eeEeccccc-cccceeEEEECCccc-ccccchhhhcc
Confidence 6677777777777543211 1 1223344566666666543 221111222 234455555543221 12223344444
Q ss_pred CCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCC
Q 045487 487 NLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLIN 566 (729)
Q Consensus 487 ~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 566 (729)
+++.............. .+.... ......+ ..+.....
T Consensus 206 ~l~~~~~~~~~~~~~~~-------------------------------~~~~~~-~~~~~~~----------~~~~~~~~ 243 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDN-------------------------------VLYEKS-ANGDYAL----------IRYPSQRE 243 (394)
T ss_dssp TCCEEEECCSSSCBSSS-------------------------------CEEEEC-TTSCEEE----------EECCTTCC
T ss_pred ccceecccccccccccc-------------------------------eeeccc-ccccccc----------cccccccc
Confidence 44444433322211110 000000 0000000 00111112
Q ss_pred ccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcC
Q 045487 567 LTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSS 646 (729)
Q Consensus 567 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 646 (729)
+..+.+.+ .++.....+|.+|++|+.+.+..+... .....|.++++|+.+.+. +.++.....+|.+|.+|+.+++..
T Consensus 244 ~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 244 DPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp CSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred cceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 22233221 122122334555555555555443322 333445555666666664 233334445566666666666654
Q ss_pred CcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccccccccccccCCCCCeeeccCC
Q 045487 647 NELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQRLSLKHN 719 (729)
Q Consensus 647 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~l~l~~n 719 (729)
+ ++.+...+|..|++|+.+.|..+ ++.....+|.++++|+.+++.++.... ..+..+.+|+.+.+..+
T Consensus 321 ~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 321 G-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred c-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 3 55555566666666666666543 443444556666666666666654431 34455566666665544
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=2.1e-10 Score=119.79 Aligned_cols=335 Identities=11% Similarity=0.098 Sum_probs=213.3
Q ss_pred cCCchhhccC-CCCcEEEccccccCCCCCCCCCCCCCCCEEEccccc---cccccCcCccCCCCCcEEEeeCcccccccc
Q 045487 306 SFPDDTCHGL-PRLKGLYMSYNQFKGPIPNNLWHCKDLSTVSLSFNQ---FTGRIPRDLGNSTKLKSLHLGLNNLIGEIP 381 (729)
Q Consensus 306 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~---l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 381 (729)
.+....|..+ ..|+.+.+..+ ++.....+|.++.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ +.....
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 5566666655 35999999764 555667889999999999998763 55555677889999998877654 444455
Q ss_pred ccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCCCCcEEECCCCcCcccCCcchhcC
Q 045487 382 QEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLPNLELLNLGLNNFSGSIPSFCFNA 461 (729)
Q Consensus 382 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 461 (729)
..+..+.+|+.+.+.. .+.......|..+.+|+.+.+..+- . .+ ....+. ...|+.+.+..... ......+..+
T Consensus 131 ~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~~-~-~I-~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c 204 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDSV-T-AI-EERAFT-GTALTQIHIPAKVT-RIGTNAFSEC 204 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-C-EE-CTTTTT-TCCCSEEEECTTCC-EECTTTTTTC
T ss_pred hhhhhhcccccccccc-eeeeecccceeccccccccccccee-e-Ee-cccccc-ccceeEEEECCccc-ccccchhhhc
Confidence 6788999999999964 4555666778899999999997652 2 11 112232 35788888876532 2445567778
Q ss_pred CCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCcc
Q 045487 462 SKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSV 541 (729)
Q Consensus 462 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 541 (729)
..+.................+.......... ........+..+.+ |.
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i---------p~------- 251 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYAL-----------------IRYPSQREDPAFKI---------PN------- 251 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----------------EECCTTCCCSEEEC---------CT-------
T ss_pred cccceecccccccccccceeecccccccccc-----------------cccccccccceEEc---------CC-------
Confidence 8888877665443221111111111100000 00111122222222 11
Q ss_pred ccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECc
Q 045487 542 SVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMN 621 (729)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 621 (729)
.+ ...-..+|..+.+|+.+.+.++... ....+|.++++|+.+.+. +.++......|.++.+|+.+++.
T Consensus 252 ~v----------~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 252 GV----------ARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp TE----------EEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred cc----------eEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence 11 1122345777888888888765443 455678888899998886 34554556678888999999997
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccc
Q 045487 622 GNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 622 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~ 698 (729)
++ ++.....+|.+|.+|+.+.+.. .++.+...+|.+|++|+.+++.++.... .++.....|+.+.+..+.+.
T Consensus 320 ~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 320 EG-ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred Cc-ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 64 5656677899999999999975 4777778899999999999999886532 35677788988888776653
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=5e-12 Score=115.01 Aligned_cols=106 Identities=27% Similarity=0.354 Sum_probs=94.6
Q ss_pred ccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcC
Q 045487 567 LTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSS 646 (729)
Q Consensus 567 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 646 (729)
-+.++++++++. .+|..+. ++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999997 6676663 7999999999999988888999999999999999999977777788999999999999
Q ss_pred CcCccCCChhhhccCCCCEEeCCCCcCcc
Q 045487 647 NELTSIIPSTFWNLEDILSFDFSSNSLNG 675 (729)
Q Consensus 647 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 675 (729)
|.+++..+..|..+++|+.|+|++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99998777779999999999999999973
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=8.5e-14 Score=143.23 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=124.1
Q ss_pred CCCccEEEccCCcccccCCcccc-----ccccCceEecCCCcccccCChhcc-CCCCCCEEECcCCccccccChhh----
Q 045487 564 LINLTTLGLGDNNLSGSLPMTLG-----RLKKLQGLYLQNNKFEGPIPQEFC-HFSRLYEVDMNGNKLSGSIPSCL---- 633 (729)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l---- 633 (729)
.++|++|++++|.++......+. ..++|+.|++++|.+++.....+. .+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45789999999998754333332 237999999999998765444443 46789999999999986544443
Q ss_pred -cCCCCCCEEECcCCcCccC----CChhhhccCCCCEEeCCCCcCccc----CCccCcCCCCCCEEeCCCCcccccc---
Q 045487 634 -GDLNSLRILSLSSNELTSI----IPSTFWNLEDILSFDFSSNSLNGS----LPLEIGNLKAVVNIDLSWNRLSGNI--- 701 (729)
Q Consensus 634 -~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~ls~n~~~~~~--- 701 (729)
...++|++|++++|.+++. ++..+..+++|++|+|++|.+++. ++..+...++|+.|+|++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3568899999999999764 344557789999999999999753 3566777889999999999998754
Q ss_pred -ccccccCCCCCeeeccCCcccc
Q 045487 702 -PSTIVGLKNLQRLSLKHNKLQG 723 (729)
Q Consensus 702 -p~~l~~l~~L~~l~l~~n~l~~ 723 (729)
+..+...++|++|++++|++.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 3445567999999999999854
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=7.6e-11 Score=121.09 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=89.9
Q ss_pred ceEecCCC-cccccCChhccCCCCCCEEECcC-CccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCC
Q 045487 592 QGLYLQNN-KFEGPIPQEFCHFSRLYEVDMNG-NKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFS 669 (729)
Q Consensus 592 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 669 (729)
..++.+++ .++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34688887 787 4677 88899999999996 99998887889999999999999999999999999999999999999
Q ss_pred CCcCcccCCccCcCCCCCCEEeCCCCcccc
Q 045487 670 SNSLNGSLPLEIGNLKAVVNIDLSWNRLSG 699 (729)
Q Consensus 670 ~n~l~~~~~~~l~~l~~L~~L~ls~n~~~~ 699 (729)
+|++++..+..+..++ |+.|+|.+|.+.-
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999865555555555 9999999999873
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.6e-10 Score=118.76 Aligned_cols=105 Identities=23% Similarity=0.235 Sum_probs=94.9
Q ss_pred cEEEccCC-cccccCCccccccccCceEecCC-CcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECc
Q 045487 568 TTLGLGDN-NLSGSLPMTLGRLKKLQGLYLQN-NKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLS 645 (729)
Q Consensus 568 ~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 645 (729)
..++.+++ +++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35788888 787 5787 99999999999996 99998888889999999999999999999999999999999999999
Q ss_pred CCcCccCCChhhhccCCCCEEeCCCCcCcc
Q 045487 646 SNELTSIIPSTFWNLEDILSFDFSSNSLNG 675 (729)
Q Consensus 646 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 675 (729)
+|.+++..+..|..++ |+.|+|.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999988777787766 9999999999873
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.06 E-value=5.5e-08 Score=100.96 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=51.8
Q ss_pred ccCCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCC
Q 045487 561 IGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLR 640 (729)
Q Consensus 561 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 640 (729)
+..+.+|+.+.+..+ ++.....++.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++.....+|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 444555555555443 33233344555555555555432 2223333444555555555555555444444555555555
Q ss_pred EEECcCCcCccCCChhhhccCCCCEEeCCC
Q 045487 641 ILSLSSNELTSIIPSTFWNLEDILSFDFSS 670 (729)
Q Consensus 641 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 670 (729)
.+++..+ ++.+...+|.+|++|+.+.+..
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 5555432 4444445555555555555543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=7.4e-08 Score=100.01 Aligned_cols=319 Identities=9% Similarity=0.059 Sum_probs=190.0
Q ss_pred CccCCCCCcEEEeeCccccccccccccCCCCccEEEcccccceeeCCccccCCCCCcEEECcCccCcccCCCccccCCCC
Q 045487 359 DLGNSTKLKSLHLGLNNLIGEIPQEIGNLRNLEILGIDQSNLVGFVPDTILNISTLKILSLFNNTFSGNLPSSKNLIGLP 438 (729)
Q Consensus 359 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 438 (729)
++....+|+.+.+.. .++.....+|.++.+|+.+.+.. .+......+|.++ +|+.+.+..+ +. .+. ...+.+ .
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~-~~aF~~-~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VK-KFG-DYVFQG-T 113 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CC-EEC-TTTTTT-C
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-ee-Eec-cceecc-C
Confidence 455567788888764 34444556788888888888864 3555666667766 5666666543 11 111 112222 3
Q ss_pred CCcEEECCCCcCcccCCcchhcCCCCcEEEccCCcceeccCccccccCCCcEEeccCCcccCCcchhhhhhhhhccCCCC
Q 045487 439 NLELLNLGLNNFSGSIPSFCFNASKLYALELGYNSFSGLIPEALGNLRNLKRLGLRRNYLTSSTSELMSFFSALVNCKSL 518 (729)
Q Consensus 439 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~~~L 518 (729)
+|+.+.+..+. .......+.++ +++.+.+..+ ++......+..+..++.+.+........... .........
T Consensus 114 ~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~ 185 (379)
T 4h09_A 114 DLDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAEN-----YVLYNKNKT 185 (379)
T ss_dssp CCSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEET-----TEEEETTSS
T ss_pred CcccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccc-----ceecccccc
Confidence 67777776542 21222223222 4544444332 2223334455555555555544322111000 000000000
Q ss_pred cEEEccCCcccccCCcchhcCccccceEecccCcccccCCccccCCCCccEEEccCCcccccCCccccccccCceEecCC
Q 045487 519 KVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIGSLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQN 598 (729)
Q Consensus 519 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 598 (729)
... .+.... .+..+.+.... .......+..+.+++.+.+..+ +.......+.++..|+.+.+..
T Consensus 186 ~~~-------------~~~~~~-~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~ 249 (379)
T 4h09_A 186 ILE-------------SYPAAK-TGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK 249 (379)
T ss_dssp EEE-------------ECCTTC-CCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT
T ss_pred eec-------------cccccc-cccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCC
Confidence 000 011111 23333332211 1123345677788998888655 3334556788899999999976
Q ss_pred CcccccCChhccCCCCCCEEECcCCccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCcccCC
Q 045487 599 NKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLNGSLP 678 (729)
Q Consensus 599 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 678 (729)
+ ++......+.++.+|+.+.+..+ +......+|.+|++|+.+++.++.++.+...+|..|.+|+.++|..+ ++....
T Consensus 250 ~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 326 (379)
T 4h09_A 250 N-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV 326 (379)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred C-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH
Confidence 5 55455667888899999999754 55456678999999999999988888888899999999999999765 555666
Q ss_pred ccCcCCCCCCEEeCCCCccccccccccccCCCCC
Q 045487 679 LEIGNLKAVVNIDLSWNRLSGNIPSTIVGLKNLQ 712 (729)
Q Consensus 679 ~~l~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~ 712 (729)
.+|.++++|+.+.+..+ ++.....+|.+++.++
T Consensus 327 ~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 327 YAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp TTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred HHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 78999999999999765 6656677788775443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=7.3e-10 Score=112.71 Aligned_cols=215 Identities=12% Similarity=0.158 Sum_probs=104.1
Q ss_pred cCCCcEEeccCCcccC-Cc-chhhhhhhhhccCCCCcEEEccCCcccccCCcchhcCccccceEecccCcccccCCcccc
Q 045487 485 LRNLKRLGLRRNYLTS-ST-SELMSFFSALVNCKSLKVIVLSENPLDGVLPSSIGNHSVSVEEIYMYKCNIHGRIPKEIG 562 (729)
Q Consensus 485 l~~L~~L~l~~~~l~~-~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 562 (729)
...++.|.+....... .. ..+..+..+...+++|+.|.+........ .++.+. .+.+...+.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~---------------~is~~~-~~~L~~ll~ 169 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQ---------------EISWIE-QVDLSPVLD 169 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTC---------------CGGGCB-CCBCHHHHH
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhc---------------cccccc-ccCHHHHHh
Confidence 3457788877655331 11 11222334455678888888865422100 000000 012223345
Q ss_pred CCCCccEEEccCCcccccCCccccccccCceEecCCCcccccCChhcc--CCCCCCEEECcCC--ccccc-----cChhh
Q 045487 563 SLINLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFC--HFSRLYEVDMNGN--KLSGS-----IPSCL 633 (729)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n--~~~~~-----~~~~l 633 (729)
.+|+|+.|.+++|.-. .++. +. +++|+.|++..|.+.......++ .+|+|++|+|+.+ ...+. +...+
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred cCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 5566666666665211 1222 22 55666666666665543333333 4566666666421 11000 01111
Q ss_pred --cCCCCCCEEECcCCcCccCCChhhh---ccCCCCEEeCCCCcCccc----CCccCcCCCCCCEEeCCCCccccccccc
Q 045487 634 --GDLNSLRILSLSSNELTSIIPSTFW---NLEDILSFDFSSNSLNGS----LPLEIGNLKAVVNIDLSWNRLSGNIPST 704 (729)
Q Consensus 634 --~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~ls~n~~~~~~p~~ 704 (729)
..+++|++|++++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.+++..-..
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 2356677777766666543333332 356677777777766643 2233344566777777777666544333
Q ss_pred ccc-CCCCCeeeccCCc
Q 045487 705 IVG-LKNLQRLSLKHNK 720 (729)
Q Consensus 705 l~~-l~~L~~l~l~~n~ 720 (729)
+.. + ...+++++++
T Consensus 327 l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC--CSEEECCSBC
T ss_pred HHHHc--CCEEEecCCc
Confidence 332 2 3445555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=6.5e-10 Score=113.08 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=110.6
Q ss_pred ccCCCCccEEEccCCccc---------ccCCccccccccCceEecCCCcccccCChhccCCCCCCEEECcCCccccccCh
Q 045487 561 IGSLINLTTLGLGDNNLS---------GSLPMTLGRLKKLQGLYLQNNKFEGPIPQEFCHFSRLYEVDMNGNKLSGSIPS 631 (729)
Q Consensus 561 ~~~l~~L~~L~l~~~~~~---------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 631 (729)
...+++|+.|.+.+.... +.+...+..+++|+.|.+++|.-. ..+. +. +++|++|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 445677888877654321 123345577899999999988411 2222 33 78999999999998754444
Q ss_pred hhc--CCCCCCEEECcC--CcCccC-----CChhh--hccCCCCEEeCCCCcCcccCCccC---cCCCCCCEEeCCCCcc
Q 045487 632 CLG--DLNSLRILSLSS--NELTSI-----IPSTF--WNLEDILSFDFSSNSLNGSLPLEI---GNLKAVVNIDLSWNRL 697 (729)
Q Consensus 632 ~l~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~ls~n~~ 697 (729)
.+. .+++|+.|+|+. |...+. +...+ ..+++|+.|+|.+|.+.+..+..+ ..+++|++|+|+.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 443 689999999863 221111 11122 247899999999999875444333 3578999999999999
Q ss_pred cccc----ccccccCCCCCeeeccCCcccc
Q 045487 698 SGNI----PSTIVGLKNLQRLSLKHNKLQG 723 (729)
Q Consensus 698 ~~~~----p~~l~~l~~L~~l~l~~n~l~~ 723 (729)
.+.. +..+..+++|+.|++++|.+..
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 8754 4445677999999999998753
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=1.2e-08 Score=93.43 Aligned_cols=116 Identities=11% Similarity=0.184 Sum_probs=61.1
Q ss_pred ccccccccCceEecCCC-ccccc----CChhccCCCCCCEEECcCCccccc----cChhhcCCCCCCEEECcCCcCccC-
Q 045487 583 MTLGRLKKLQGLYLQNN-KFEGP----IPQEFCHFSRLYEVDMNGNKLSGS----IPSCLGDLNSLRILSLSSNELTSI- 652 (729)
Q Consensus 583 ~~l~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~- 652 (729)
..+...++|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|+|++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455667777777776 66542 222334456666666666666532 223344445666666666666543
Q ss_pred ---CChhhhccCCCCEEeC--CCCcCccc----CCccCcCCCCCCEEeCCCCccc
Q 045487 653 ---IPSTFWNLEDILSFDF--SSNSLNGS----LPLEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 653 ---~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~ls~n~~~ 698 (729)
+...+...++|++|+| ++|.+... +...+...++|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333444455666666 55555432 2223333455555555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=2.7e-08 Score=91.20 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=86.0
Q ss_pred ccccCCCCccEEEccCC-ccccc----CCccccccccCceEecCCCcccccC----ChhccCCCCCCEEECcCCccccc-
Q 045487 559 KEIGSLINLTTLGLGDN-NLSGS----LPMTLGRLKKLQGLYLQNNKFEGPI----PQEFCHFSRLYEVDMNGNKLSGS- 628 (729)
Q Consensus 559 ~~~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~- 628 (729)
..+...++|++|++++| .+... +...+...++|++|+|++|.+.+.. ...+...++|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566788889999888 77633 3445566788999999999887543 33344567899999999998753
Q ss_pred ---cChhhcCCCCCCEEEC--cCCcCccCC----ChhhhccCCCCEEeCCCCcCc
Q 045487 629 ---IPSCLGDLNSLRILSL--SSNELTSII----PSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 629 ---~~~~l~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~ 674 (729)
+..++...++|++|++ ++|.+.... ...+...++|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456777788999999 889887653 344556688999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=1.5e-07 Score=90.47 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=33.4
Q ss_pred CCCCCCEEECcCCcccc--ccChhhcCCCCCCEEECcCCcCccCCChhhhccC--CCCEEeCCCCcCccc
Q 045487 611 HFSRLYEVDMNGNKLSG--SIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLE--DILSFDFSSNSLNGS 676 (729)
Q Consensus 611 ~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~ 676 (729)
++++|+.|+|++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 45566666666666654 2334445556666666666665543 2233333 455555555555443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=1.2e-07 Score=91.02 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=73.5
Q ss_pred EECcCCccc---cccChhhcCCCCCCEEECcCCcCcc--CCChhhhccCCCCEEeCCCCcCcccCCccCcCCC--CCCEE
Q 045487 618 VDMNGNKLS---GSIPSCLGDLNSLRILSLSSNELTS--IIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLK--AVVNI 690 (729)
Q Consensus 618 L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L 690 (729)
++++.|+.. ...+....++++|++|+|++|.+++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 555666432 2222233568899999999999998 4467788999999999999999864 3344444 99999
Q ss_pred eCCCCcccccccc-------ccccCCCCCeeec
Q 045487 691 DLSWNRLSGNIPS-------TIVGLKNLQRLSL 716 (729)
Q Consensus 691 ~ls~n~~~~~~p~-------~l~~l~~L~~l~l 716 (729)
+|++|++.+..|. .+..+++|+.||-
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 9999999986652 4678899999873
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=1.7e-07 Score=83.05 Aligned_cols=84 Identities=10% Similarity=0.081 Sum_probs=64.0
Q ss_pred CCCCEEECcCCccccccChhhcCCCCCCEEECcCCc-CccCCChhhhcc----CCCCEEeCCCCc-CcccCCccCcCCCC
Q 045487 613 SRLYEVDMNGNKLSGSIPSCLGDLNSLRILSLSSNE-LTSIIPSTFWNL----EDILSFDFSSNS-LNGSLPLEIGNLKA 686 (729)
Q Consensus 613 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 686 (729)
.+|+.||+++|.++...-..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468899999998886666667888899999999885 776555555553 468888888885 76655556777888
Q ss_pred CCEEeCCCCc
Q 045487 687 VVNIDLSWNR 696 (729)
Q Consensus 687 L~~L~ls~n~ 696 (729)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888886
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=4.9e-07 Score=80.16 Aligned_cols=84 Identities=12% Similarity=0.129 Sum_probs=44.6
Q ss_pred CCccEEEccCCcccccCCccccccccCceEecCCCc-ccccCChhccCC----CCCCEEECcCCc-cccccChhhcCCCC
Q 045487 565 INLTTLGLGDNNLSGSLPMTLGRLKKLQGLYLQNNK-FEGPIPQEFCHF----SRLYEVDMNGNK-LSGSIPSCLGDLNS 638 (729)
Q Consensus 565 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~l~~l~~ 638 (729)
..|++||+++|.++..--..+.+|++|+.|+|++|. +++.....++.+ ++|++|++++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666554433445556666666666663 554433344432 245566666553 44333334455555
Q ss_pred CCEEECcCCc
Q 045487 639 LRILSLSSNE 648 (729)
Q Consensus 639 L~~L~l~~n~ 648 (729)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.59 E-value=3.9e-05 Score=69.38 Aligned_cols=115 Identities=16% Similarity=0.266 Sum_probs=64.8
Q ss_pred cccccccCceEecCCC-ccccc----CChhccCCCCCCEEECcCCccccc----cChhhcCCCCCCEEECcCCcCccCCC
Q 045487 584 TLGRLKKLQGLYLQNN-KFEGP----IPQEFCHFSRLYEVDMNGNKLSGS----IPSCLGDLNSLRILSLSSNELTSIIP 654 (729)
Q Consensus 584 ~l~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~ 654 (729)
.+.+-++|+.|+|++| .+.+. +.+.+..-+.|+.|+|++|++... +.+++..-++|++|+|++|.|.+...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445567777887774 55432 223344456677777777777633 23344455677777777777765432
Q ss_pred ----hhhhccCCCCEEeCCCC---cCcc----cCCccCcCCCCCCEEeCCCCccc
Q 045487 655 ----STFWNLEDILSFDFSSN---SLNG----SLPLEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 655 ----~~~~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~ls~n~~~ 698 (729)
+++..-+.|++|+|++| .+.. .+.+.+..-++|+.|+++.|.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 23334456777777654 2221 12334445566666666665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=4.4e-05 Score=68.98 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=66.3
Q ss_pred ccCCCCccEEEccCC-ccccc----CCccccccccCceEecCCCcccccCChh----ccCCCCCCEEECcCCccccc---
Q 045487 561 IGSLINLTTLGLGDN-NLSGS----LPMTLGRLKKLQGLYLQNNKFEGPIPQE----FCHFSRLYEVDMNGNKLSGS--- 628 (729)
Q Consensus 561 ~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~~~~--- 628 (729)
+..-+.|++|+|+++ ++... +.+.+..-+.|+.|+|++|.+.+..... +..-+.|++|+|++|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567777777765 55421 3344555667777777777776543333 33446777777777777643
Q ss_pred -cChhhcCCCCCCEEECcCCc---CccC----CChhhhccCCCCEEeCCCCcC
Q 045487 629 -IPSCLGDLNSLRILSLSSNE---LTSI----IPSTFWNLEDILSFDFSSNSL 673 (729)
Q Consensus 629 -~~~~l~~l~~L~~L~l~~n~---l~~~----~~~~~~~l~~L~~L~L~~n~l 673 (729)
+.+++..-+.|++|+|++|. +... +.+.+..-++|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23345555667777776542 2321 233445556777777776654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.75 E-value=0.0026 Score=53.53 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=40.0
Q ss_pred CEEECcCCcCc-cCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCccc
Q 045487 640 RILSLSSNELT-SIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNRLS 698 (729)
Q Consensus 640 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~~~ 698 (729)
..++.+++.++ ..+|..+. .+|+.|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777776 24554432 46888888888887655566777788888888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.65 E-value=0.0036 Score=52.71 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=29.4
Q ss_pred EEECcCCccc-cccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCCcCc
Q 045487 617 EVDMNGNKLS-GSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSNSLN 674 (729)
Q Consensus 617 ~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 674 (729)
.++.++++++ ..+|..+. .+|++|+|++|.|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23333332 34556666666665555555555556666666666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.89 E-value=4.7 Score=31.47 Aligned_cols=47 Identities=9% Similarity=0.139 Sum_probs=31.5
Q ss_pred ccccccChhhcCCCCCCEEECcCCcCccCCChhhhccCCCCEEeCCCC
Q 045487 624 KLSGSIPSCLGDLNSLRILSLSSNELTSIIPSTFWNLEDILSFDFSSN 671 (729)
Q Consensus 624 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 671 (729)
.++.....+|.+|++|+.+.|.. .++.+...+|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 44545556677777777777774 356666677777777777777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.88 E-value=29 Score=26.90 Aligned_cols=50 Identities=12% Similarity=-0.018 Sum_probs=39.6
Q ss_pred CCcCccCCChhhhccCCCCEEeCCCCcCcccCCccCcCCCCCCEEeCCCCc
Q 045487 646 SNELTSIIPSTFWNLEDILSFDFSSNSLNGSLPLEIGNLKAVVNIDLSWNR 696 (729)
Q Consensus 646 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~ 696 (729)
+..++.+...+|..|++|+.+.|-.+- +.....+|.++.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCCC
Confidence 446677777899999999999998764 43666788999999999987653
No 167
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=24.29 E-value=80 Score=28.33 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=4.7
Q ss_pred CCEEeCCCCccc
Q 045487 687 VVNIDLSWNRLS 698 (729)
Q Consensus 687 L~~L~ls~n~~~ 698 (729)
|+..+++++.+.
T Consensus 172 l~~~~l~~a~l~ 183 (214)
T 2w7z_A 172 LXGLDFSQNTFE 183 (214)
T ss_dssp CTTCBCTTSBCS
T ss_pred eccCCcccCCcC
Confidence 333344444333
No 168
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=20.83 E-value=2.2e+02 Score=24.82 Aligned_cols=11 Identities=9% Similarity=-0.085 Sum_probs=4.3
Q ss_pred CCEEECcCCcc
Q 045487 615 LYEVDMNGNKL 625 (729)
Q Consensus 615 L~~L~l~~n~~ 625 (729)
++..++.++.+
T Consensus 97 l~~~~f~~~~l 107 (200)
T 2xt2_A 97 EGALSFERCIL 107 (200)
T ss_dssp TTSEEEESCBC
T ss_pred ccceEEEcCcc
Confidence 33334444433
Done!