Query 045488
Match_columns 385
No_of_seqs 257 out of 1137
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0730 Predicted permeases [G 99.5 2.6E-13 5.6E-18 129.8 13.3 118 77-202 6-123 (258)
2 PRK10621 hypothetical protein; 99.5 4.6E-13 9.9E-18 129.2 14.2 114 77-199 11-124 (266)
3 PF01925 TauE: Sulfite exporte 99.4 1.4E-11 3E-16 115.5 19.9 108 83-199 3-110 (240)
4 PRK10621 hypothetical protein; 99.4 2.9E-12 6.3E-17 123.6 14.0 115 81-202 142-256 (266)
5 COG0730 Predicted permeases [G 99.3 4.5E-11 9.6E-16 114.4 15.8 115 81-201 141-255 (258)
6 PF01925 TauE: Sulfite exporte 99.1 4.4E-10 9.6E-15 105.3 10.9 102 88-196 136-240 (240)
7 KOG0569 Permease of the major 91.1 24 0.00053 37.7 19.8 34 324-357 319-352 (485)
8 TIGR00895 2A0115 benzoate tran 89.4 9.9 0.00021 36.6 13.7 30 314-343 289-318 (398)
9 PRK10929 putative mechanosensi 88.4 60 0.0013 38.3 26.9 48 155-202 676-725 (1109)
10 KOG2881 Predicted membrane pro 88.1 4.5 9.8E-05 40.0 10.1 65 141-208 95-159 (294)
11 PRK11281 hypothetical protein; 85.9 81 0.0018 37.3 27.0 50 153-202 689-740 (1113)
12 COG1968 BacA Undecaprenyl pyro 83.1 52 0.0011 32.7 15.7 157 152-351 84-258 (270)
13 TIGR02840 spore_YtaF putative 77.8 63 0.0014 30.4 18.1 51 152-202 34-84 (206)
14 PF12794 MscS_TM: Mechanosensi 76.5 91 0.002 31.6 18.9 51 152-202 200-252 (340)
15 TIGR00891 2A0112 putative sial 75.4 81 0.0018 30.5 18.6 32 315-346 279-310 (405)
16 PF11169 DUF2956: Protein of u 73.1 10 0.00023 32.2 5.7 17 253-272 84-100 (103)
17 TIGR00893 2A0114 d-galactonate 71.5 93 0.002 29.4 14.8 28 314-341 255-282 (399)
18 COG2119 Predicted membrane pro 70.1 29 0.00063 32.7 8.5 54 148-201 133-186 (190)
19 PF11368 DUF3169: Protein of u 67.4 1.2E+02 0.0026 29.1 16.5 25 152-176 9-33 (248)
20 KOG0254 Predicted transporter 66.6 1.7E+02 0.0037 30.6 17.7 38 313-354 336-373 (513)
21 TIGR00879 SP MFS transporter, 59.7 1.8E+02 0.0039 28.5 16.0 33 314-346 323-355 (481)
22 PTZ00370 STEVOR; Provisional 58.9 68 0.0015 32.2 9.2 47 163-209 242-291 (296)
23 PRK10642 proline/glycine betai 57.9 2.3E+02 0.0051 29.2 20.5 31 315-345 291-321 (490)
24 PF05232 BTP: Bacterial Transm 54.2 21 0.00045 27.9 3.9 39 101-139 19-57 (67)
25 PF03606 DcuC: C4-dicarboxylat 52.9 3E+02 0.0066 29.0 14.9 22 101-123 144-165 (465)
26 PHA02108 hypothetical protein 50.7 23 0.0005 25.5 3.3 26 310-335 19-48 (48)
27 PRK09669 putative symporter Ya 50.5 1.3E+02 0.0027 30.6 10.1 27 318-344 272-298 (444)
28 PF03209 PUCC: PUCC protein; 50.0 2.7E+02 0.0059 29.2 12.4 65 139-211 115-184 (403)
29 PRK11469 hypothetical protein; 48.0 57 0.0012 30.4 6.5 48 154-202 43-90 (188)
30 PF02673 BacA: Bacitracin resi 47.6 2.8E+02 0.0061 27.1 19.3 95 110-209 29-131 (259)
31 PF11833 DUF3353: Protein of u 46.9 2.5E+02 0.0055 26.4 12.5 61 127-193 121-190 (194)
32 TIGR00892 2A0113 monocarboxyla 46.1 2E+02 0.0044 29.5 10.9 16 161-176 381-396 (455)
33 PF01169 UPF0016: Uncharacteri 45.6 91 0.002 24.9 6.5 42 150-191 35-76 (78)
34 TIGR00805 oat sodium-independe 45.4 4.5E+02 0.0097 28.8 15.6 29 311-339 368-396 (633)
35 PRK11462 putative transporter; 45.2 2.1E+02 0.0045 29.6 10.8 25 320-344 273-297 (460)
36 TIGR00792 gph sugar (Glycoside 44.5 1.5E+02 0.0033 29.3 9.5 30 317-346 264-293 (437)
37 PRK14766 lipoprotein signal pe 44.1 18 0.00038 34.4 2.5 19 121-139 109-127 (201)
38 TIGR00887 2A0109 phosphate:H+ 43.7 3.9E+02 0.0084 27.6 22.9 32 316-347 341-372 (502)
39 TIGR00900 2A0121 H+ Antiporter 43.6 1.9E+02 0.0042 27.2 9.6 37 312-348 36-72 (365)
40 PF09527 ATPase_gene1: Putativ 43.0 1.3E+02 0.0028 22.0 6.6 46 154-199 6-52 (55)
41 TIGR01112 mtrD N5-methyltetrah 42.6 22 0.00047 33.8 2.8 28 84-116 140-167 (223)
42 TIGR02230 ATPase_gene1 F0F1-AT 42.4 79 0.0017 26.8 5.9 24 155-178 49-72 (100)
43 PRK08633 2-acyl-glycerophospho 41.2 6E+02 0.013 29.1 19.5 29 314-342 273-301 (1146)
44 PF07099 DUF1361: Protein of u 40.5 2.9E+02 0.0062 25.2 10.7 80 257-355 26-118 (168)
45 PF03596 Cad: Cadmium resistan 39.9 90 0.002 29.4 6.5 34 164-197 41-74 (191)
46 TIGR00901 2A0125 AmpG-related 39.8 3.1E+02 0.0068 26.4 10.6 34 311-344 246-279 (356)
47 PRK00968 tetrahydromethanopter 39.7 24 0.00052 34.0 2.6 23 84-109 144-166 (240)
48 TIGR00844 c_cpa1 na(+)/h(+) an 39.3 6.5E+02 0.014 29.0 20.6 39 154-192 102-143 (810)
49 PRK11902 ampG muropeptide tran 38.0 3.3E+02 0.0072 27.0 10.7 35 311-345 247-281 (402)
50 PF03092 BT1: BT1 family; Int 38.0 4.7E+02 0.01 27.0 16.4 38 317-354 262-299 (433)
51 PRK10263 DNA translocase FtsK; 36.8 4.1E+02 0.0089 32.3 12.3 20 159-178 141-160 (1355)
52 PF05052 MerE: MerE protein; 36.7 1E+02 0.0022 24.9 5.2 37 162-201 38-74 (75)
53 COG2119 Predicted membrane pro 35.6 2.2E+02 0.0048 26.9 8.2 49 150-198 36-84 (190)
54 PF04207 MtrD: Tetrahydrometha 34.7 39 0.00084 32.3 3.1 25 84-111 140-164 (223)
55 PRK09548 PTS system ascorbate- 33.9 2.2E+02 0.0048 31.5 9.1 13 98-110 355-367 (602)
56 PF09679 TraQ: Type-F conjugat 33.3 1.1E+02 0.0024 25.4 5.1 48 313-368 16-63 (93)
57 PRK03557 zinc transporter ZitB 33.0 5E+02 0.011 25.7 13.9 50 156-205 164-213 (312)
58 PF10399 UCR_Fe-S_N: Ubiquitin 32.8 16 0.00034 26.1 0.2 18 91-108 19-36 (41)
59 TIGR00145 FTR1 family protein. 32.7 5.1E+02 0.011 25.8 10.9 30 181-211 79-108 (283)
60 PF07857 DUF1632: CEO family ( 32.5 2.9E+02 0.0063 27.1 8.9 27 77-110 180-206 (254)
61 PF06916 DUF1279: Protein of u 31.6 1E+02 0.0023 25.1 4.9 42 330-372 3-44 (91)
62 PF03741 TerC: Integral membra 31.6 1.3E+02 0.0029 27.8 6.1 49 150-201 34-82 (183)
63 TIGR00890 2A0111 Oxalate/Forma 31.4 4.5E+02 0.0097 24.7 10.5 33 314-346 244-276 (377)
64 TIGR00822 EII-Sor PTS system, 31.4 4.1E+02 0.0088 26.3 9.8 133 100-232 77-265 (265)
65 TIGR00710 efflux_Bcr_CflA drug 31.4 4.7E+02 0.01 25.0 14.7 31 314-344 246-276 (385)
66 TIGR00880 2_A_01_02 Multidrug 31.1 1.1E+02 0.0024 24.1 5.0 29 320-348 8-36 (141)
67 TIGR00887 2A0109 phosphate:H+ 31.0 1.3E+02 0.0027 31.3 6.6 37 314-350 60-96 (502)
68 PHA03029 hypothetical protein; 30.6 1.3E+02 0.0029 24.4 5.1 41 259-299 21-68 (92)
69 TIGR00886 2A0108 nitrite extru 30.4 4.9E+02 0.011 24.8 10.3 35 313-347 40-74 (366)
70 PRK10077 xylE D-xylose transpo 30.1 5.8E+02 0.013 25.6 16.5 30 319-348 315-344 (479)
71 COG4280 Predicted membrane pro 30.1 80 0.0017 30.3 4.4 32 174-205 59-90 (236)
72 PRK13682 hypothetical protein; 30.0 1.4E+02 0.003 22.5 4.7 22 311-332 4-25 (51)
73 TIGR00939 2a57 Equilibrative N 29.7 3.6E+02 0.0077 28.3 9.6 20 312-331 376-395 (437)
74 PRK00281 undecaprenyl pyrophos 29.2 5.7E+02 0.012 25.2 18.6 152 151-346 83-252 (268)
75 TIGR00883 2A0106 metabolite-pr 28.6 1.4E+02 0.0031 28.4 6.1 34 317-350 42-75 (394)
76 PRK09848 glucuronide transport 28.4 3.9E+02 0.0085 27.0 9.5 26 319-344 273-298 (448)
77 TIGR00908 2A0305 ethanolamine 28.0 5.6E+02 0.012 26.2 10.6 11 138-148 370-380 (442)
78 TIGR00883 2A0106 metabolite-pr 27.8 5.3E+02 0.011 24.4 17.8 30 315-344 260-289 (394)
79 KOG0254 Predicted transporter 27.5 1.5E+02 0.0032 31.0 6.5 45 314-358 93-137 (513)
80 TIGR00881 2A0104 phosphoglycer 27.3 5.3E+02 0.011 24.3 13.9 20 318-337 260-279 (379)
81 PF03419 Peptidase_U4: Sporula 27.0 6.1E+02 0.013 24.8 10.3 15 76-90 34-48 (293)
82 PRK10642 proline/glycine betai 26.7 1.9E+02 0.0041 29.9 7.0 36 316-351 63-98 (490)
83 KOG1734 Predicted RING-contain 26.6 4.2E+02 0.009 26.7 8.7 54 253-306 99-158 (328)
84 PRK09705 cynX putative cyanate 26.6 1.9E+02 0.0042 28.7 6.9 42 314-355 48-89 (393)
85 PF09973 DUF2208: Predicted me 26.5 3.1E+02 0.0067 26.7 7.8 38 172-210 17-54 (233)
86 PRK09412 anaerobic C4-dicarbox 26.5 4.7E+02 0.01 27.4 9.8 21 102-122 111-134 (433)
87 PF04474 DUF554: Protein of un 26.1 3.6E+02 0.0079 26.1 8.2 40 161-200 10-52 (226)
88 PRK14857 tatA twin arginine tr 25.9 3.9E+02 0.0084 22.3 7.6 16 194-209 31-46 (90)
89 TIGR01299 synapt_SV2 synaptic 25.6 6.4E+02 0.014 28.5 11.2 40 313-352 205-244 (742)
90 TIGR00897 2A0118 polyol permea 25.4 6.7E+02 0.015 24.8 11.2 29 316-344 263-291 (402)
91 PF10361 DUF2434: Protein of u 25.4 3.8E+02 0.0083 27.0 8.3 95 112-206 42-148 (296)
92 PRK10077 xylE D-xylose transpo 25.4 2E+02 0.0043 29.0 6.7 36 314-349 59-94 (479)
93 COG4129 Predicted membrane pro 25.1 7.5E+02 0.016 25.3 11.1 17 162-178 133-149 (332)
94 KOG2533 Permease of the major 25.1 4.2E+02 0.0091 28.4 9.3 99 254-359 264-362 (495)
95 TIGR00882 2A0105 oligosacchari 24.7 6.8E+02 0.015 24.6 11.5 33 314-346 42-74 (396)
96 TIGR00879 SP MFS transporter, 24.5 2E+02 0.0044 28.1 6.4 36 314-349 75-110 (481)
97 PRK11043 putative transporter; 24.4 6.8E+02 0.015 24.5 10.5 38 313-350 44-81 (401)
98 PF10852 DUF2651: Protein of u 24.3 3.2E+02 0.0069 22.5 6.3 23 311-333 55-77 (82)
99 TIGR00895 2A0115 benzoate tran 24.2 2.3E+02 0.0049 27.1 6.6 35 314-348 56-90 (398)
100 PF11688 DUF3285: Protein of u 24.2 1.7E+02 0.0037 21.3 4.1 29 328-357 10-38 (45)
101 PF07260 ANKH: Progressive ank 24.1 5E+02 0.011 26.8 9.0 85 283-369 7-115 (345)
102 PF07690 MFS_1: Major Facilita 23.8 2.1E+02 0.0046 26.8 6.3 38 314-351 36-73 (352)
103 PRK06926 flagellar motor prote 23.4 1.8E+02 0.004 28.7 5.8 52 73-136 3-54 (271)
104 TIGR01113 mtrE N5-methyltetrah 23.3 6.3E+02 0.014 25.1 9.2 23 36-58 26-48 (283)
105 PRK10429 melibiose:sodium symp 23.3 4.8E+02 0.01 26.8 9.2 23 321-343 277-299 (473)
106 PF07690 MFS_1: Major Facilita 23.2 3.2E+02 0.0069 25.6 7.3 38 314-351 247-284 (352)
107 PRK00575 tatA twin arginine tr 23.2 1.5E+02 0.0033 24.9 4.4 17 194-210 29-45 (92)
108 COG4125 Predicted membrane pro 22.9 5.7E+02 0.012 23.2 10.5 96 102-199 26-129 (149)
109 KOG2927 Membrane component of 22.8 1.3E+02 0.0029 31.0 4.7 51 281-332 185-240 (372)
110 PHA01816 hypothetical protein 22.8 77 0.0017 27.9 2.7 22 200-221 7-28 (160)
111 PF09835 DUF2062: Uncharacteri 22.8 5.2E+02 0.011 22.6 11.9 46 77-125 21-66 (154)
112 PRK00191 tatA twin arginine tr 22.8 1.8E+02 0.0039 24.0 4.7 18 193-210 27-44 (84)
113 PF04206 MtrE: Tetrahydrometha 22.7 6.8E+02 0.015 24.8 9.2 23 36-58 26-48 (269)
114 PRK11010 ampG muropeptide tran 22.6 8.4E+02 0.018 25.4 10.9 32 311-342 260-291 (491)
115 COG3416 Uncharacterized protei 22.5 57 0.0012 31.4 1.9 59 47-105 79-157 (233)
116 PRK15075 citrate-proton sympor 22.3 2.3E+02 0.0051 28.5 6.6 42 317-359 63-104 (434)
117 PRK11404 putative PTS system 21.8 1.7E+02 0.0036 31.4 5.5 60 77-142 400-465 (482)
118 KOG3832 Predicted amino acid t 21.7 4.7E+02 0.01 25.6 7.9 33 178-210 41-82 (319)
119 TIGR02718 sider_RhtX_FptX side 21.6 2.6E+02 0.0055 27.6 6.5 35 313-347 247-281 (390)
120 TIGR00891 2A0112 putative sial 21.5 2.9E+02 0.0063 26.5 6.8 34 314-347 51-84 (405)
121 KOG0569 Permease of the major 21.4 3.2E+02 0.007 29.3 7.6 53 317-370 67-119 (485)
122 PF13347 MFS_2: MFS/sugar tran 21.4 8.3E+02 0.018 24.5 17.3 38 314-351 264-301 (428)
123 PRK02958 tatA twin arginine tr 21.2 1.3E+02 0.0028 24.2 3.5 30 180-209 9-44 (73)
124 PRK00259 intracellular septati 21.2 5.1E+02 0.011 24.0 8.0 38 294-336 8-45 (179)
125 PF04632 FUSC: Fusaric acid re 21.0 1E+03 0.022 25.6 11.4 29 148-176 121-149 (650)
126 COG2270 Permeases of the major 21.0 5.2E+02 0.011 27.5 8.8 102 252-359 313-426 (438)
127 PRK05122 major facilitator sup 20.8 2.2E+02 0.0049 27.9 5.9 34 314-347 55-88 (399)
128 PRK04561 tatA twin arginine tr 20.7 1.3E+02 0.0028 24.3 3.4 15 195-209 30-44 (75)
129 PF07760 DUF1616: Protein of u 20.6 1.4E+02 0.0031 29.3 4.5 85 99-193 65-152 (287)
130 PF05975 EcsB: Bacterial ABC t 20.4 9.2E+02 0.02 24.6 11.0 30 101-130 117-146 (386)
131 COG3619 Predicted membrane pro 20.4 5E+02 0.011 25.1 8.0 39 147-185 166-204 (226)
132 KOG0252 Inorganic phosphate tr 20.3 1.9E+02 0.0042 31.3 5.5 41 315-355 89-129 (538)
133 PF05915 DUF872: Eukaryotic pr 20.1 4.3E+02 0.0094 22.8 6.8 48 70-126 35-82 (115)
No 1
>COG0730 Predicted permeases [General function prediction only]
Probab=99.49 E-value=2.6e-13 Score=129.76 Aligned_cols=118 Identities=18% Similarity=0.347 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHhhhccccccccchHHHHHHHhcCChhhHhHhhhHHHHHHHHHHHHHHHHhhCCCCCCCcchhHHHH
Q 045488 77 KIVVGAIIGFFGAACGSVGGDGGGGIFLPMLNLIVGFDAKSSIALSRCMITGVAASTFVYNLRQRHPTLDIPIIDYDLAL 156 (385)
Q Consensus 77 ~~ivg~iiGfl~g~lssl~GIGGG~I~VPiL~l~~g~~~k~A~~tSl~~I~~~sl~~~~~~l~~~hp~~~~plId~~lal 156 (385)
..++..+.|+++|+++++.|+|||.+.+|+|..+. +|++.|.++|+..+..+++.+.+.|.|++| +||+.+.
T Consensus 6 ~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~-~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~-------v~~~~~~ 77 (258)
T COG0730 6 TLLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLG-LPPAAALGTSLLAVLFTSLSSALAYLKRGN-------VDWKLAL 77 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ccHHHHH
Confidence 45667778999999999999999999999998865 999999999999999999999999999864 8999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 157 LFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGVE 202 (385)
Q Consensus 157 ll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~ 202 (385)
.+.+++++|+.+|+.+...+|+..++.+|.+++++.+.+++.+..+
T Consensus 78 ~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~ 123 (258)
T COG0730 78 ILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL 123 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999998776443
No 2
>PRK10621 hypothetical protein; Provisional
Probab=99.48 E-value=4.6e-13 Score=129.22 Aligned_cols=114 Identities=19% Similarity=0.283 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHhhhccccccccchHHHHHHHhcCChhhHhHhhhHHHHHHHHHHHHHHHHhhCCCCCCCcchhHHHH
Q 045488 77 KIVVGAIIGFFGAACGSVGGDGGGGIFLPMLNLIVGFDAKSSIALSRCMITGVAASTFVYNLRQRHPTLDIPIIDYDLAL 156 (385)
Q Consensus 77 ~~ivg~iiGfl~g~lssl~GIGGG~I~VPiL~l~~g~~~k~A~~tSl~~I~~~sl~~~~~~l~~~hp~~~~plId~~lal 156 (385)
..+...+.|+++|+++++.| |||.+.+|+|. .+|+|+++|+++|++.++.+++++...|.|++ .+||+.+.
T Consensus 11 ~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~-~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~-------~v~~~~~~ 81 (266)
T PRK10621 11 LLGVLFFVAMLAGFIDSIAG-GGGLLTIPALL-AAGMSPAQALATNKLQACGGSFSASLYFIRRK-------VVNLADQK 81 (266)
T ss_pred HHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCHHHHH
Confidence 44556667899999999999 99999999996 47999999999999999999999999888865 49999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 045488 157 LFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLK 199 (385)
Q Consensus 157 ll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~k 199 (385)
.+.++.++|+.+|+++...+|++.++.+|.++++..+.+++.+
T Consensus 82 ~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 82 LNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM 124 (266)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999888877543
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.43 E-value=1.4e-11 Score=115.48 Aligned_cols=108 Identities=22% Similarity=0.378 Sum_probs=98.8
Q ss_pred HHHHHHHHhhhccccccccchHHHHHHHhcCChhhHhHhhhHHHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHH
Q 045488 83 IIGFFGAACGSVGGDGGGGIFLPMLNLIVGFDAKSSIALSRCMITGVAASTFVYNLRQRHPTLDIPIIDYDLALLFQPML 162 (385)
Q Consensus 83 iiGfl~g~lssl~GIGGG~I~VPiL~l~~g~~~k~A~~tSl~~I~~~sl~~~~~~l~~~hp~~~~plId~~lalll~p~~ 162 (385)
++++++|++.+..|.|||.+.+|+|.+ + +|+++|+++++...+.+++.+.+.|.|+ +.+||+....+.++.
T Consensus 3 ~~~~~ag~v~g~~G~g~g~i~~p~l~~-~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~ 73 (240)
T PF01925_consen 3 LIGFLAGFVSGITGFGGGLIAVPILIL-F-LPPKQAVATSLFINLFTSLIAALRHRKH-------GNIDWKIVLPLIIGA 73 (240)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHHHc-------cccchhhhhhhhhHh
Confidence 467888888999999999999999998 4 8999999999999999999999887664 359999999999999
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 045488 163 VLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLK 199 (385)
Q Consensus 163 llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~k 199 (385)
++|+.+|+++...+|+..++.++.++++..+.+++.|
T Consensus 74 ~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~ 110 (240)
T PF01925_consen 74 LIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLK 110 (240)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999888653
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.41 E-value=2.9e-12 Score=123.65 Aligned_cols=115 Identities=14% Similarity=0.199 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhhccccccccchHHHHHHHhcCChhhHhHhhhHHHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 045488 81 GAIIGFFGAACGSVGGDGGGGIFLPMLNLIVGFDAKSSIALSRCMITGVAASTFVYNLRQRHPTLDIPIIDYDLALLFQP 160 (385)
Q Consensus 81 g~iiGfl~g~lssl~GIGGG~I~VPiL~l~~g~~~k~A~~tSl~~I~~~sl~~~~~~l~~~hp~~~~plId~~lalll~p 160 (385)
....|+++|+++++.|+|||.+++|.+...+++|+|+|+++|..+.+.+++.+...+... +.+||+.++.+.|
T Consensus 142 ~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~-------G~v~~~~~l~l~~ 214 (266)
T PRK10621 142 ALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILG-------GKVIWATGFVMLV 214 (266)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CeehHHHHHHHHH
Confidence 344677777778888999999999999999999999999999999999999988877764 4589999999999
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 161 MLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGVE 202 (385)
Q Consensus 161 ~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~ 202 (385)
++++|+.+|+++++++|++.++.++..+++.++.+++.|+.-
T Consensus 215 g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~~~ 256 (266)
T PRK10621 215 GQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHG 256 (266)
T ss_pred HHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988776
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.32 E-value=4.5e-11 Score=114.39 Aligned_cols=115 Identities=25% Similarity=0.373 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhhccccccccchHHHHHHHhcCChhhHhHhhhHHHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 045488 81 GAIIGFFGAACGSVGGDGGGGIFLPMLNLIVGFDAKSSIALSRCMITGVAASTFVYNLRQRHPTLDIPIIDYDLALLFQP 160 (385)
Q Consensus 81 g~iiGfl~g~lssl~GIGGG~I~VPiL~l~~g~~~k~A~~tSl~~I~~~sl~~~~~~l~~~hp~~~~plId~~lalll~p 160 (385)
...+|+++|+++++.|+|||...+|.+....+.|.+.++++|.+.++.++..+...+... + +.+||..+..+.|
T Consensus 141 ~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~l~~ 214 (258)
T COG0730 141 ALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFA-L-----GAVDWPLALLLAV 214 (258)
T ss_pred HHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHh-c-----CcccHHHHHHHHH
Confidence 344566667778888999999999999999999999999999999999999999988874 2 4689999889999
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 161 MLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGV 201 (385)
Q Consensus 161 ~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~ 201 (385)
+.++|+.+|+++++++|++.++.+|..+++.++.+++.+..
T Consensus 215 g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~~ 255 (258)
T COG0730 215 GSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRGL 255 (258)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999877654
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.11 E-value=4.4e-10 Score=105.31 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=92.3
Q ss_pred HHHhhhccccccccchHHHHHHHhcCChhhHhHhhhHHHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHH---HHHHHHH
Q 045488 88 GAACGSVGGDGGGGIFLPMLNLIVGFDAKSSIALSRCMITGVAASTFVYNLRQRHPTLDIPIIDYDLALL---FQPMLVL 164 (385)
Q Consensus 88 ~g~lssl~GIGGG~I~VPiL~l~~g~~~k~A~~tSl~~I~~~sl~~~~~~l~~~hp~~~~plId~~lall---l~p~~ll 164 (385)
+|+++++.|+|||.+.+|++....++|+|++.+|+..+.+.+++.+...+... +.+||+.... +.|+.++
T Consensus 136 ~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~ 208 (240)
T PF01925_consen 136 IGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLIL-------GDVDWPMLLLSLILLPGAFL 208 (240)
T ss_pred hhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHHH
Confidence 56667777999999999999988899999999999999999999999998874 4688887766 9999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 045488 165 GISIGVAFNVIFADWMITILLIVLLIVMSTKA 196 (385)
Q Consensus 165 G~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~ 196 (385)
|+.+|.++.+.+|+..++.++.++++.++.+|
T Consensus 209 G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~l 240 (240)
T PF01925_consen 209 GAFLGAKLARKIPQKVFRRIFLILLLLSGLKL 240 (240)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999988764
No 7
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=91.07 E-value=24 Score=37.68 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Q 045488 324 IVGQYVVRKLINIFARASIIIFTLSFTIFVSALT 357 (385)
Q Consensus 324 ~vGq~vv~k~V~k~gR~SiIVf~La~vI~~Sai~ 357 (385)
++...+--.+|+|.|||.+++...+.......+.
T Consensus 319 ~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~ 352 (485)
T KOG0569|consen 319 LLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLM 352 (485)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 3333344456788999999998877665554443
No 8
>TIGR00895 2A0115 benzoate transport.
Probab=89.41 E-value=9.9 Score=36.60 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASII 343 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiI 343 (385)
++..+..+++++|..+..++.+|+||+.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (398)
T TIGR00895 289 TGGALFNFGGVIGSIIFGWLADRLGPRVTA 318 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 445555667788888888899999988433
No 9
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.40 E-value=60 Score=38.30 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=30.1
Q ss_pred HHHHHHHHHHH-HHHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 155 ALLFQPMLVLG-ISIGVAF-NVIFADWMITILLIVLLIVMSTKAFLKGVE 202 (385)
Q Consensus 155 alll~p~~llG-~~iGv~l-~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~ 202 (385)
.+++.|..+++ +.+|=+. +..+-+.+...++.++.....+.+..+++.
T Consensus 676 ~l~~~P~~l~~l~~~GY~yTa~~L~~~l~~S~~l~~~~~l~y~~~~R~l~ 725 (1109)
T PRK10929 676 LLIGAPLVAALASALGYLATAQALLARLETSVAIWFLLLVVYHIIRRWML 725 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456766654 4444433 456667777777777777777777777653
No 10
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=88.09 E-value=4.5 Score=39.95 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=52.3
Q ss_pred hCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 141 RHPTLDIPIIDYDLALLFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGVESWKKET 208 (385)
Q Consensus 141 ~hp~~~~plId~~lalll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~~~kkEt 208 (385)
||| |-.+-......+..++++++.+|=..-..+|...-..+=.+++++.++||++.|++.-+.|.
T Consensus 95 r~~---R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~ 159 (294)
T KOG2881|consen 95 RYP---RLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEG 159 (294)
T ss_pred hcc---chhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 565 33455556667788899999999998889999988888888999999999999988765554
No 11
>PRK11281 hypothetical protein; Provisional
Probab=85.94 E-value=81 Score=37.26 Aligned_cols=50 Identities=14% Similarity=0.379 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 153 DLALLFQPMLVLGI-SIGVAF-NVIFADWMITILLIVLLIVMSTKAFLKGVE 202 (385)
Q Consensus 153 ~lalll~p~~llG~-~iGv~l-~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~ 202 (385)
...+++.|..+++. .+|=+. +..+-+.++..++.++.....+.+..+++.
T Consensus 689 ~~~l~~~P~~l~~l~~~GY~yTa~~l~~~l~~s~~l~~~~~l~~~~~~R~l~ 740 (1113)
T PRK11281 689 RTVLTIAPIALIVLVVLGYYYTALRLIGRLIETLYLLIIWNLLYQTVLRGLS 740 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677776644 444433 456677777778777776766777777654
No 12
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=83.07 E-value=52 Score=32.68 Aligned_cols=157 Identities=16% Similarity=0.246 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCccC
Q 045488 152 YDLALLFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGVESWKKETITKREAARCLELNEEFKFEPESL 231 (385)
Q Consensus 152 ~~lalll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~~~kkEt~~k~e~~~~~~~~~~~~~e~~~~ 231 (385)
|+..+.+..+++.-+.+|..+...+.+++... ..++..++.-|+-.+-.|...++
T Consensus 84 ~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~~~------~~va~~lIv~gi~li~~e~~~~~------------------- 138 (270)
T COG1968 84 FRLWLKILVATIPAVVLGLLFKDFIKSHLFNP------RVVAIALIVGGILLILAEKLNKK------------------- 138 (270)
T ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHccCh------HHHHHHHHHHHHHHHHHHHhccc-------------------
Confidence 67777777777777778877777555544432 22333344556666665653321
Q ss_pred CCCCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcccc-------------ccchhhHHHHHHhHHHHH
Q 045488 232 SNDTTPEKTEEPRKSEVSIMQNIYWKELGLLVAVWAVVLALQIAKNYEV-------------TCSVVYWVLNFLQIPVAG 298 (385)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~~~~~~~w~~l~~L~~vw~~~l~~~ilrg~~~-------------~Cs~~YWvL~~lqiPv~~ 298 (385)
| ++++ .++.+|++-... - ++.++.++=|-+. .=..+-+.-.++-+|..+
T Consensus 139 -----~------~~~~---~~~l~~~da~~I-G---laQ~lAl~PG~SRSGaTI~~~lllG~~r~~AaefSFlLaIP~m~ 200 (270)
T COG1968 139 -----P------RLRD---LDDLTLRDALII-G---LAQCLALIPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMF 200 (270)
T ss_pred -----c------CcCC---hhhCCHHHHHHH-H---HHHHHHHcCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0 0000 234566643322 2 2344444333111 123566788888899999
Q ss_pred HHHHHHHHHHH--H--HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 045488 299 AVSAYEAIALD--F--TAIYFFAVATIAAI-VGQYVVRKLINIFARASIIIFTLSFTI 351 (385)
Q Consensus 299 ~vt~~~~~~L~--F--yal~f~~v~~va~~-vGq~vv~k~V~k~gR~SiIVf~La~vI 351 (385)
+.+.+.....+ + -..-...+++++++ +|..+++.+.|-.+|.|...|..=-.+
T Consensus 201 GA~~l~l~k~~~~~~~~~~~~l~vg~i~AFvv~~~~I~~ll~~i~~~~~~~F~~Yriv 258 (270)
T COG1968 201 GASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKFLLRFIKRHSFIPFAIYRIV 258 (270)
T ss_pred HHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeehHHHHHH
Confidence 99998765543 2 22234566666666 666777888888888888877654433
No 13
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=77.83 E-value=63 Score=30.43 Aligned_cols=51 Identities=12% Similarity=0.185 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 152 YDLALLFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGVE 202 (385)
Q Consensus 152 ~~lalll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~ 202 (385)
.-.++.-..+..+|..+|..+..++|+++-..+=.++|.+.+.+|++++++
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~ 84 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFR 84 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555667888899999999998777778888899999999998875
No 14
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=76.45 E-value=91 Score=31.57 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 152 YDLALLFQPMLVLGISIGVAF--NVIFADWMITILLIVLLIVMSTKAFLKGVE 202 (385)
Q Consensus 152 ~~lalll~p~~llG~~iGv~l--~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~ 202 (385)
+..+++..|..+++..+=.+. +..+-+.++..++.++.....+.+..++..
T Consensus 200 ~~~~li~~Pl~li~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl~ 252 (340)
T PF12794_consen 200 WWPLLILAPLALIVLALLGYYYTALQLLERLILSLYLLLGWLLVYQLILRWLL 252 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777776655544433 557778888888888888888888888654
No 15
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=75.39 E-value=81 Score=30.46 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Q 045488 315 FFAVATIAAIVGQYVVRKLINIFARASIIIFT 346 (385)
Q Consensus 315 f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~ 346 (385)
+..+..+++++|..+.-++.+|+||+..+++.
T Consensus 279 ~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~ 310 (405)
T TIGR00891 279 IVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCS 310 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhhhHHH
Confidence 34455667788888888889999988766544
No 16
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=73.08 E-value=10 Score=32.22 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 045488 253 NIYWKELGLLVAVWAVVLAL 272 (385)
Q Consensus 253 ~~~w~~l~~L~~vw~~~l~~ 272 (385)
..||. +|++.|+.|.+-
T Consensus 84 ~LPW~---LL~lSW~gF~~Y 100 (103)
T PF11169_consen 84 WLPWG---LLVLSWIGFIAY 100 (103)
T ss_pred chhHH---HHHHHHHHHHHH
Confidence 46887 999999999764
No 17
>TIGR00893 2A0114 d-galactonate transporter.
Probab=71.46 E-value=93 Score=29.42 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARAS 341 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~S 341 (385)
+...+..+++++|..+..++.+|.||+.
T Consensus 255 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 255 FMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344445556667777777777777774
No 18
>COG2119 Predicted membrane protein [Function unknown]
Probab=70.08 E-value=29 Score=32.68 Aligned_cols=54 Identities=9% Similarity=0.109 Sum_probs=46.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 148 PIIDYDLALLFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGV 201 (385)
Q Consensus 148 plId~~lalll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~ 201 (385)
..+-....+-+.++.+++...|-++++++|.+.++.+=.++++..+...+..+.
T Consensus 133 ~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~~ 186 (190)
T COG2119 133 WAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF 186 (190)
T ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999999999999999999888887766543
No 19
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=67.39 E-value=1.2e+02 Score=29.09 Aligned_cols=25 Identities=24% Similarity=0.111 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc
Q 045488 152 YDLALLFQPMLVLGISIGVAFNVIF 176 (385)
Q Consensus 152 ~~lalll~p~~llG~~iGv~l~~~~ 176 (385)
++....+..++++|+.+|......-
T Consensus 9 ~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 9 LRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888666544
No 20
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=66.60 E-value=1.7e+02 Score=30.57 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 045488 313 IYFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTIFVS 354 (385)
Q Consensus 313 l~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI~~S 354 (385)
+...++-+++++++ -.+++|.||+.++++..+....-.
T Consensus 336 ~~~~~v~~~~t~~~----~~lvd~~gRr~lll~s~~~m~~~~ 373 (513)
T KOG0254|consen 336 IILGVVNFLGTLVA----TYLVDRFGRRKLLLFGAAGMSICL 373 (513)
T ss_pred HHHHHHHHHHHHHH----HHHHHHhccHHHHHHhHHHHHHHH
Confidence 35667777777777 445566699999998877655433
No 21
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=59.71 E-value=1.8e+02 Score=28.47 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFT 346 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~ 346 (385)
++..+..+++++|..+.-++.+|.||+..++..
T Consensus 323 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 355 (481)
T TIGR00879 323 LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIG 355 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 444445555666777777888888988876654
No 22
>PTZ00370 STEVOR; Provisional
Probab=58.93 E-value=68 Score=32.20 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 163 VLGISIGVAFNVIFA---DWMITILLIVLLIVMSTKAFLKGVESWKKETI 209 (385)
Q Consensus 163 llG~~iGv~l~~~~p---~~~l~~lf~ilLl~~a~~~~~kg~~~~kkEt~ 209 (385)
+.|+..|+..+.+.| ..++.++++++|+..=+-+++|-.+.||-|.+
T Consensus 242 lagtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~k 291 (296)
T PTZ00370 242 LAGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECK 291 (296)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 345556666666666 44555566666666556677889999999975
No 23
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=57.88 E-value=2.3e+02 Score=29.22 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Q 045488 315 FFAVATIAAIVGQYVVRKLINIFARASIIIF 345 (385)
Q Consensus 315 f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf 345 (385)
...+..+++++|..+.-++.+|+||+..++.
T Consensus 291 ~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 321 (490)
T PRK10642 291 IIIAIMIGMLFVQPVMGLLSDRFGRRPFVIL 321 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3445566677777778888999999876544
No 24
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=54.15 E-value=21 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=35.0
Q ss_pred cchHHHHHHHhcCChhhHhHhhhHHHHHHHHHHHHHHHH
Q 045488 101 GIFLPMLNLIVGFDAKSSIALSRCMITGVAASTFVYNLR 139 (385)
Q Consensus 101 ~I~VPiL~l~~g~~~k~A~~tSl~~I~~~sl~~~~~~l~ 139 (385)
.+.+|++..++|.+..+|.+++..+.....+-|.++|.-
T Consensus 19 ~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~ 57 (67)
T PF05232_consen 19 LISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNWL 57 (67)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999988888888888873
No 25
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=52.87 E-value=3e+02 Score=29.03 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=13.5
Q ss_pred cchHHHHHHHhcCChhhHhHhhh
Q 045488 101 GIFLPMLNLIVGFDAKSSIALSR 123 (385)
Q Consensus 101 ~I~VPiL~l~~g~~~k~A~~tSl 123 (385)
.+.+|++.- +|+|+..|++...
T Consensus 144 ~il~pi~~a-lG~d~~~a~a~v~ 165 (465)
T PF03606_consen 144 PILIPILIA-LGYDPITAAAAVI 165 (465)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHH
Confidence 344454433 6899888877543
No 26
>PHA02108 hypothetical protein
Probab=50.69 E-value=23 Score=25.49 Aligned_cols=26 Identities=35% Similarity=0.820 Sum_probs=21.4
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 045488 310 FTAIY----FFAVATIAAIVGQYVVRKLIN 335 (385)
Q Consensus 310 Fyal~----f~~v~~va~~vGq~vv~k~V~ 335 (385)
||++| |++.++.++.+|..++.|+++
T Consensus 19 fy~my~g~ay~vlgca~avigstiiar~~~ 48 (48)
T PHA02108 19 FYAMYKGDAYFVLGCAAAVIGSTIIARLIK 48 (48)
T ss_pred HHHHHccchhhhhHhHHHHHhHHHHHHHhC
Confidence 67776 788899999999999888763
No 27
>PRK09669 putative symporter YagG; Provisional
Probab=50.50 E-value=1.3e+02 Score=30.57 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHH
Q 045488 318 VATIAAIVGQYVVRKLINIFARASIII 344 (385)
Q Consensus 318 v~~va~~vGq~vv~k~V~k~gR~SiIV 344 (385)
...+++++|..+..++.+|+||+..++
T Consensus 272 ~~~i~~ii~~~~~~~l~~r~gk~~~~~ 298 (444)
T PRK09669 272 TGMIAGLFGALLSERLLGKFDRVRAFK 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 344555555555556666666655443
No 28
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=49.95 E-value=2.7e+02 Score=29.23 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=36.3
Q ss_pred HhhCCCCCCCcchhHHHHHHHHHHHHHHHH-----HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 139 RQRHPTLDIPIIDYDLALLFQPMLVLGISI-----GVAFNVIFADWMITILLIVLLIVMSTKAFLKGVESWKKETITK 211 (385)
Q Consensus 139 ~~~hp~~~~plId~~lalll~p~~llG~~i-----Gv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~~~kkEt~~k 211 (385)
...-|..+||. .+.++-.+.++|..+ |..+...-|+.+++++..+.++ -+...-+-.||.|.+..
T Consensus 115 ~D~~~e~~R~~----~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i----~~~l~~ia~wg~E~r~~ 184 (403)
T PF03209_consen 115 ADLAPEERRPR----VVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI----ALLLNLIALWGQEPRRS 184 (403)
T ss_pred HhcCCHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH----HHHHHHHHHHhcccCCc
Confidence 44455555663 333333334444444 4445555666666666555444 34567789999997543
No 29
>PRK11469 hypothetical protein; Provisional
Probab=47.99 E-value=57 Score=30.36 Aligned_cols=48 Identities=17% Similarity=0.395 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 154 LALLFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGVE 202 (385)
Q Consensus 154 lalll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~ 202 (385)
.+..-..+.++|..+|..+.+++|++- ..+=..+|.+.+.+|++++++
T Consensus 43 ~g~~q~~m~~~g~~~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~~ 90 (188)
T PRK11469 43 FGAVETLTPLIGWGMGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGFR 90 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 344444556678888999999988866 566666788999999997764
No 30
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=47.59 E-value=2.8e+02 Score=27.14 Aligned_cols=95 Identities=15% Similarity=0.274 Sum_probs=53.9
Q ss_pred HhcCChhhHhHhhhHHHHHHHHHHHHHHHHh-----hCCCC---CCCcchhHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 045488 110 IVGFDAKSSIALSRCMITGVAASTFVYNLRQ-----RHPTL---DIPIIDYDLALLFQPMLVLGISIGVAFNVIFADWMI 181 (385)
Q Consensus 110 ~~g~~~k~A~~tSl~~I~~~sl~~~~~~l~~-----~hp~~---~~plId~~lalll~p~~llG~~iGv~l~~~~p~~~l 181 (385)
++|.|+.........+=+|+.++-.+++.++ ++... ++..-|++....+..+++.-+.+|..+.+.+.+...
T Consensus 29 llg~~~~~~~~f~v~lhlGtllAvl~~fr~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiatip~~v~G~~~~~~i~~~~~ 108 (259)
T PF02673_consen 29 LLGWDPEPGLAFDVFLHLGTLLAVLIYFRKDIWRLLKGFFRGLRGRSNPDRRLLLLIIIATIPTGVVGLLFKDFIEALFF 108 (259)
T ss_pred HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677776666666655566666655555432 11100 112346778888888888888888877776665542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 182 TILLIVLLIVMSTKAFLKGVESWKKETI 209 (385)
Q Consensus 182 ~~lf~ilLl~~a~~~~~kg~~~~kkEt~ 209 (385)
.- ...+++-++..|.-.|-.|..
T Consensus 109 ~~-----~~~v~~~Li~~g~lL~~~~~~ 131 (259)
T PF02673_consen 109 SS-----PLVVAIALIITGLLLWLADRL 131 (259)
T ss_pred hc-----hHHHHHHHHHHHHHHHHHHHH
Confidence 11 112334445556666665653
No 31
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=46.93 E-value=2.5e+02 Score=26.38 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhchH---------HHHHHHHHHHHHHHH
Q 045488 127 TGVAASTFVYNLRQRHPTLDIPIIDYDLALLFQPMLVLGISIGVAFNVIFAD---------WMITILLIVLLIVMS 193 (385)
Q Consensus 127 ~~~sl~~~~~~l~~~hp~~~~plId~~lalll~p~~llG~~iGv~l~~~~p~---------~~l~~lf~ilLl~~a 193 (385)
+..++.+.++.+.+|. .--++..++-..+..+|..+|..+...+|. ..+..++..++++.+
T Consensus 121 Lal~~~~~iyfl~~K~------~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~ 190 (194)
T PF11833_consen 121 LALGLGACIYFLNRKE------RKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLV 190 (194)
T ss_pred HHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3444555556565542 112344555555566788888888776644 345555555554443
No 32
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=46.07 E-value=2e+02 Score=29.46 Aligned_cols=16 Identities=6% Similarity=0.073 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhhc
Q 045488 161 MLVLGISIGVAFNVIF 176 (385)
Q Consensus 161 ~~llG~~iGv~l~~~~ 176 (385)
+.++|..++..+....
T Consensus 381 g~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 381 AVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHccccceeeeehhc
Confidence 3344444444444434
No 33
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=45.63 E-value=91 Score=24.95 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=34.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 045488 150 IDYDLALLFQPMLVLGISIGVAFNVIFADWMITILLIVLLIV 191 (385)
Q Consensus 150 Id~~lalll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~ 191 (385)
+-....+-+..+..++..+|..+.+++|++.++.+-.++++.
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~ 76 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLL 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 445666677788889999999999999999999888776654
No 34
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=45.36 E-value=4.5e+02 Score=28.79 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 045488 311 TAIYFFAVATIAAIVGQYVVRKLINIFAR 339 (385)
Q Consensus 311 yal~f~~v~~va~~vGq~vv~k~V~k~gR 339 (385)
.++++....+.++++|..+.-++++|+++
T Consensus 368 ag~l~~~~~i~~~~vG~~l~G~l~~r~~~ 396 (633)
T TIGR00805 368 ANFLIGVVNLPAAGLGYLIGGFIMKKFKL 396 (633)
T ss_pred HHHHhhhhhhhHHHHHHhhhhheeeeecc
Confidence 34444555555667777777778888773
No 35
>PRK11462 putative transporter; Provisional
Probab=45.24 E-value=2.1e+02 Score=29.63 Aligned_cols=25 Identities=12% Similarity=0.345 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCcHHHH
Q 045488 320 TIAAIVGQYVVRKLINIFARASIII 344 (385)
Q Consensus 320 ~va~~vGq~vv~k~V~k~gR~SiIV 344 (385)
.+++++|..+..++.+|+||+..+.
T Consensus 273 ~i~~iig~~l~~~l~~r~gkk~~~~ 297 (460)
T PRK11462 273 CVGNLIGSALAKPLTDWKCKVTIFW 297 (460)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHH
Confidence 3445555555566666666665543
No 36
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=44.48 E-value=1.5e+02 Score=29.33 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Q 045488 317 AVATIAAIVGQYVVRKLINIFARASIIIFT 346 (385)
Q Consensus 317 ~v~~va~~vGq~vv~k~V~k~gR~SiIVf~ 346 (385)
.+..+++++|..+..++.+|+||+..+++.
T Consensus 264 ~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~ 293 (437)
T TIGR00792 264 SIAIVAGLIGVLLFPRLVKKFGRKILFAGG 293 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 344566666777777777777776655443
No 37
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=44.10 E-value=18 Score=34.38 Aligned_cols=19 Identities=5% Similarity=0.066 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 045488 121 LSRCMITGVAASTFVYNLR 139 (385)
Q Consensus 121 tSl~~I~~~sl~~~~~~l~ 139 (385)
.++.+++++++.|.+-.++
T Consensus 109 l~l~LIlGGAlGNlIDRl~ 127 (201)
T PRK14766 109 IVLSILLAGSWGNLLARLW 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7788999999999999885
No 38
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=43.70 E-value=3.9e+02 Score=27.63 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q 045488 316 FAVATIAAIVGQYVVRKLINIFARASIIIFTL 347 (385)
Q Consensus 316 ~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~L 347 (385)
..+..++.++|-.+.-.+++|.||+.+++...
T Consensus 341 ~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~ 372 (502)
T TIGR00887 341 LIIALAGTVPGYWVTVFLVDIIGRKPIQLMGF 372 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Confidence 44455566667777778888899988765543
No 39
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=43.56 E-value=1.9e+02 Score=27.23 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 045488 312 AIYFFAVATIAAIVGQYVVRKLINIFARASIIIFTLS 348 (385)
Q Consensus 312 al~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La 348 (385)
.-+...+..++..+++...-++.+|+||+..++....
T Consensus 36 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~ 72 (365)
T TIGR00900 36 LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADL 72 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHH
Confidence 3456666777888888888899999999988775543
No 40
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=43.02 E-value=1.3e+02 Score=21.99 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHH
Q 045488 154 LALLFQPMLVLGISIGVAFNVIFAD-WMITILLIVLLIVMSTKAFLK 199 (385)
Q Consensus 154 lalll~p~~llG~~iGv~l~~~~p~-~~l~~lf~ilLl~~a~~~~~k 199 (385)
++.-+..+.++|..+|-++.++++. ....+++.++=+..++....|
T Consensus 6 lg~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~~~ 52 (55)
T PF09527_consen 6 LGFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNVYR 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777888889888888886 455555555445555544444
No 41
>TIGR01112 mtrD N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit D. coenzyme M methyltransferase subunit D in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=42.56 E-value=22 Score=33.78 Aligned_cols=28 Identities=29% Similarity=0.737 Sum_probs=19.4
Q ss_pred HHHHHHHhhhccccccccchHHHHHHHhcCChh
Q 045488 84 IGFFGAACGSVGGDGGGGIFLPMLNLIVGFDAK 116 (385)
Q Consensus 84 iGfl~g~lssl~GIGGG~I~VPiL~l~~g~~~k 116 (385)
-|.++|+ ++|+||+.++..++.. ++++.
T Consensus 140 sG~IGg~---lGGiGG~L~Y~al~~~--~~~~~ 167 (223)
T TIGR01112 140 SGIIGGA---LGGIGGALVYYALIEV--GLSPG 167 (223)
T ss_pred hhhhhhh---hcccchhHHHHHHHhc--ccCcc
Confidence 3444444 3799999999999984 44443
No 42
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=42.42 E-value=79 Score=26.83 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchH
Q 045488 155 ALLFQPMLVLGISIGVAFNVIFAD 178 (385)
Q Consensus 155 alll~p~~llG~~iGv~l~~~~p~ 178 (385)
++-+..++++|..+|.++-..+|.
T Consensus 49 G~~~v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 49 GWSVAIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Confidence 344556677888888888888874
No 43
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=41.20 E-value=6e+02 Score=29.07 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASI 342 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~Si 342 (385)
++..+..+++++|..+..++.+|.+|+.+
T Consensus 273 ~~~~~~~ig~~~g~~~~g~l~~r~~~~~~ 301 (1146)
T PRK08633 273 YLLAASAIGIGIGSLLAGRLSGRHIELGL 301 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceEccc
Confidence 44455556677777777788777776543
No 44
>PF07099 DUF1361: Protein of unknown function (DUF1361); InterPro: IPR009793 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
Probab=40.54 E-value=2.9e+02 Score=25.19 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHH--HHHHhh-------ccccccchhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 257 KELGLLVAVWAVVL--ALQIAK-------NYEVTCSVVYWVLNFLQIPVAGAVSAYEAIALDFTAIYFFAVATIAAIVGQ 327 (385)
Q Consensus 257 ~~l~~L~~vw~~~l--~~~ilr-------g~~~~Cs~~YWvL~~lqiPv~~~vt~~~~~~L~Fyal~f~~v~~va~~vGq 327 (385)
--..++.++|+.|+ +..++. ++...-+...|.-..+.+ -+...|...++...
T Consensus 26 ~l~~~~~~~WLlF~PNApY~lTDliHL~~~~~~~~~~~~W~~~~~l~-------------------~~~~~gll~G~~Sl 86 (168)
T PF07099_consen 26 LLFWLLFLLWLLFLPNAPYMLTDLIHLSFNGIYRQNPPIWFDFLLLL-------------------SFALFGLLLGFLSL 86 (168)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhccccccccchHHHHHHHHHH-------------------HHHHHHHHHHHHHH
Confidence 34567778888887 222221 222333455566555433 23344555666666
Q ss_pred HHHHHHHHHh----CCcHHHHHHHHHHHHHHH
Q 045488 328 YVVRKLINIF----ARASIIIFTLSFTIFVSA 355 (385)
Q Consensus 328 ~vv~k~V~k~----gR~SiIVf~La~vI~~Sa 355 (385)
..+.+.++++ +++.........+.++|+
T Consensus 87 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~Lss 118 (168)
T PF07099_consen 87 YLILKILRRRLHRQRNGWWIWLFIILISFLSS 118 (168)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 6666666666 555566655555555554
No 45
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=39.91 E-value=90 Score=29.35 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 045488 164 LGISIGVAFNVIFADWMITILLIVLLIVMSTKAF 197 (385)
Q Consensus 164 lG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~ 197 (385)
..+.+|+.....+|+..+.-++.++=++.++|.+
T Consensus 41 ~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l 74 (191)
T PF03596_consen 41 LASLLGAFGLLFIPPEWILGLLGLIPIYLGIKAL 74 (191)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888899988888888888888888644
No 46
>TIGR00901 2A0125 AmpG-related permease.
Probab=39.81 E-value=3.1e+02 Score=26.36 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Q 045488 311 TAIYFFAVATIAAIVGQYVVRKLINIFARASIII 344 (385)
Q Consensus 311 yal~f~~v~~va~~vGq~vv~k~V~k~gR~SiIV 344 (385)
++..+.+.+.+++++|..+..++.+|+||+..++
T Consensus 246 ~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~ 279 (356)
T TIGR00901 246 IALVAKINGLLGAILGGLIGGIIMQPLNILYALL 279 (356)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4556667777888888888889999999765544
No 47
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=39.73 E-value=24 Score=33.96 Aligned_cols=23 Identities=43% Similarity=0.866 Sum_probs=17.5
Q ss_pred HHHHHHHhhhccccccccchHHHHHH
Q 045488 84 IGFFGAACGSVGGDGGGGIFLPMLNL 109 (385)
Q Consensus 84 iGfl~g~lssl~GIGGG~I~VPiL~l 109 (385)
-|.++|+ ++|+||+.++..++.+
T Consensus 144 sGvIGg~---lGGiGG~LiY~al~~~ 166 (240)
T PRK00968 144 SGVIGGA---LGGIGGALIYIALLEL 166 (240)
T ss_pred hhhhhhh---hcccchHHHHHHHHHh
Confidence 3444444 4799999999999986
No 48
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=39.31 E-value=6.5e+02 Score=28.97 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-h--HHHHHHHHHHHHHHH
Q 045488 154 LALLFQPMLVLGISIGVAFNVIF-A--DWMITILLIVLLIVM 192 (385)
Q Consensus 154 lalll~p~~llG~~iGv~l~~~~-p--~~~l~~lf~ilLl~~ 192 (385)
...++.|++.++..+++.+..++ | +|..-+++...+.-+
T Consensus 102 V~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPT 143 (810)
T TIGR00844 102 VTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITAT 143 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCC
Confidence 44455666777777777777655 5 566666666655543
No 49
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=38.03 E-value=3.3e+02 Score=27.00 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Q 045488 311 TAIYFFAVATIAAIVGQYVVRKLINIFARASIIIF 345 (385)
Q Consensus 311 yal~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf 345 (385)
++.++..++.++.++|..+..++.+|+||+..++.
T Consensus 247 ~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~ 281 (402)
T PRK11902 247 VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLML 281 (402)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566667778888999999999999997776543
No 50
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=37.96 E-value=4.7e+02 Score=26.98 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 045488 317 AVATIAAIVGQYVVRKLINIFARASIIIFTLSFTIFVS 354 (385)
Q Consensus 317 ~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI~~S 354 (385)
.++-+++++|..+-+++.++..-++++++........+
T Consensus 262 ~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~ 299 (433)
T PF03092_consen 262 IVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLAS 299 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 78888999999999999999988888766655444444
No 51
>PRK10263 DNA translocase FtsK; Provisional
Probab=36.77 E-value=4.1e+02 Score=32.26 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhchH
Q 045488 159 QPMLVLGISIGVAFNVIFAD 178 (385)
Q Consensus 159 ~p~~llG~~iGv~l~~~~p~ 178 (385)
..++++|..++..+...+..
T Consensus 141 ~gGGIIG~lLs~lL~~LfG~ 160 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLHS 160 (1355)
T ss_pred cccchHHHHHHHHHHHHHhH
Confidence 56788888888888777764
No 52
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=36.68 E-value=1e+02 Score=24.88 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 162 LVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGV 201 (385)
Q Consensus 162 ~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~ 201 (385)
.+.|+..|+++... |.+..+....|.+.+..+..+++
T Consensus 38 vLaGTaaGafl~e~---w~iaal~l~~LF~lsl~~~lRaf 74 (75)
T PF05052_consen 38 VLAGTAAGAFLGEH---WVIAALTLTGLFVLSLTRALRAF 74 (75)
T ss_pred HHccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 66788888888774 77777777666666665555443
No 53
>COG2119 Predicted membrane protein [Function unknown]
Probab=35.65 E-value=2.2e+02 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=40.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 045488 150 IDYDLALLFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFL 198 (385)
Q Consensus 150 Id~~lalll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~ 198 (385)
|-...+..+..+..+.+.+|-.....+|+......-.+.++..++++..
T Consensus 36 v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ 84 (190)
T COG2119 36 VFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLI 84 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhc
Confidence 5556777777888899999999999999999999988888887776543
No 54
>PF04207 MtrD: Tetrahydromethanopterin S-methyltransferase, subunit D ; InterPro: IPR005779 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit D in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=34.67 E-value=39 Score=32.27 Aligned_cols=25 Identities=36% Similarity=0.658 Sum_probs=18.2
Q ss_pred HHHHHHHhhhccccccccchHHHHHHHh
Q 045488 84 IGFFGAACGSVGGDGGGGIFLPMLNLIV 111 (385)
Q Consensus 84 iGfl~g~lssl~GIGGG~I~VPiL~l~~ 111 (385)
-|.++|+ ++|+||+.++..++....
T Consensus 140 sG~IGg~---lGG~GG~LiY~aL~~~~~ 164 (223)
T PF04207_consen 140 SGVIGGA---LGGIGGALIYYALYNVGF 164 (223)
T ss_pred hhhhhhh---hcccchHHHHHHHHHhhc
Confidence 3444444 479999999999998654
No 55
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=33.89 E-value=2.2e+02 Score=31.49 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=8.5
Q ss_pred ccccchHHHHHHH
Q 045488 98 GGGGIFLPMLNLI 110 (385)
Q Consensus 98 GGG~I~VPiL~l~ 110 (385)
++..+.+|-++-.
T Consensus 355 ~~~~iiIPg~ip~ 367 (602)
T PRK09548 355 DAPIIIIPGFIPM 367 (602)
T ss_pred CCceEEecccHhh
Confidence 4467778877643
No 56
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=33.27 E-value=1.1e+02 Score=25.44 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 045488 313 IYFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTIFVSALTLGGVGLAKVIK 368 (385)
Q Consensus 313 l~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI~~Sai~m~~~Gi~~~i~ 368 (385)
.|-..+|+.. |+|-++|+ |+--.-|.||-+|+++.++-|+++|.|.|.
T Consensus 16 ~wv~~lG~wf-----HIvarLV~---~~P~mA~~LAeiia~~Lvl~GgYrILda~i 63 (93)
T PF09679_consen 16 MWVFSLGFWF-----HIVARLVY---RQPEMAFFLAEIIAVGLVLSGGYRILDAWI 63 (93)
T ss_pred chhhHHHHHH-----HHHHHHHH---hChHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3444444443 44555554 577889999999999999999999999984
No 57
>PRK03557 zinc transporter ZitB; Provisional
Probab=33.00 E-value=5e+02 Score=25.75 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 156 LLFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGVESWK 205 (385)
Q Consensus 156 lll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~~~k 205 (385)
.+...+.++|..++.+......|....++..++++..++++++++.+.--
T Consensus 164 ~l~s~~vlv~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Ll 213 (312)
T PRK03557 164 LLGSVGAIIAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELL 213 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555444443444568889999999999999999999876433
No 58
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=32.81 E-value=16 Score=26.10 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=13.8
Q ss_pred hhhccccccccchHHHHH
Q 045488 91 CGSVGGDGGGGIFLPMLN 108 (385)
Q Consensus 91 lssl~GIGGG~I~VPiL~ 108 (385)
.++++|+|++...+|+..
T Consensus 19 t~~~gavG~~~~a~Pfv~ 36 (41)
T PF10399_consen 19 TSAVGAVGAAAAAWPFVS 36 (41)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345567899999999875
No 59
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=32.71 E-value=5.1e+02 Score=25.78 Aligned_cols=30 Identities=13% Similarity=0.322 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 181 ITILLIVLLIVMSTKAFLKGVESWKKETITK 211 (385)
Q Consensus 181 l~~lf~ilLl~~a~~~~~kg~~~~kkEt~~k 211 (385)
..++-++++++++.-|. |-.+.||+|-+.+
T Consensus 79 ~~lvAv~~l~~m~~Wm~-~~~~~~~~~i~~~ 108 (283)
T TIGR00145 79 FGVIAVVMLSYMGLWML-RMQRKWRVKIERQ 108 (283)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44445556666776666 5567888776554
No 60
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=32.48 E-value=2.9e+02 Score=27.11 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhccccccccchHHHHHHH
Q 045488 77 KIVVGAIIGFFGAACGSVGGDGGGGIFLPMLNLI 110 (385)
Q Consensus 77 ~~ivg~iiGfl~g~lssl~GIGGG~I~VPiL~l~ 110 (385)
+-++|+++..++|++ -|.-++|+..+-
T Consensus 180 ~RivG~~LAv~aGvl-------yGs~fvPv~Yi~ 206 (254)
T PF07857_consen 180 KRIVGIILAVFAGVL-------YGSNFVPVIYIQ 206 (254)
T ss_pred chhHhHHHHHHHHHH-------HhcccchHHHHH
Confidence 355676666665554 467899998763
No 61
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=31.59 E-value=1e+02 Score=25.13 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=31.2
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhc
Q 045488 330 VRKLINIFARASIIIFTLSFTIFVSALTLGGVGLAKVIKRIEH 372 (385)
Q Consensus 330 v~k~V~k~gR~SiIVf~La~vI~~Sai~m~~~Gi~~~i~~~~~ 372 (385)
++++.||||...+.+.+.-..+-++..-+...-..| +..+.+
T Consensus 3 ~K~l~k~YG~~~l~vy~~~s~~~~~~~y~~v~~GvD-v~~~~~ 44 (91)
T PF06916_consen 3 LKQLFKKYGYVALGVYLGLSFISLGSCYLAVSSGVD-VIALLE 44 (91)
T ss_pred HHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHH
Confidence 578999999999999998888877776665444446 444443
No 62
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=31.57 E-value=1.3e+02 Score=27.83 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 150 IDYDLALLFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGV 201 (385)
Q Consensus 150 Id~~lalll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~ 201 (385)
+.|.....+.- =.+-...|+++-+.+ +.+..++.++|++.++|++....
T Consensus 34 l~~Gi~~A~~l-R~~~i~~~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~~~ 82 (183)
T PF03741_consen 34 LFWGIIGAIVL-RIIFIFLASWLLSIF--PWILLIGGLFLLYIAIKLLHEER 82 (183)
T ss_pred HHHhHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44544433321 123444566665555 66889999999998888766533
No 63
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=31.42 E-value=4.5e+02 Score=24.74 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFT 346 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~ 346 (385)
.+..+..++.++|..+.-++.+|.||+..+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 276 (377)
T TIGR00890 244 LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIV 276 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 445556667778888888888888988765443
No 64
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=31.39 E-value=4.1e+02 Score=26.31 Aligned_cols=133 Identities=11% Similarity=-0.044 Sum_probs=0.0
Q ss_pred ccchHHHHHHHhcCChhhHhHhhh--------HHHHHHHHHHHHHHHHhhCCCCC--CCcchhHH----------HHHHH
Q 045488 100 GGIFLPMLNLIVGFDAKSSIALSR--------CMITGVAASTFVYNLRQRHPTLD--IPIIDYDL----------ALLFQ 159 (385)
Q Consensus 100 G~I~VPiL~l~~g~~~k~A~~tSl--------~~I~~~sl~~~~~~l~~~hp~~~--~plId~~l----------alll~ 159 (385)
|.+.--.+....|.++..|++++. ..++.-++.+.+.|...|+-... +..-.+.. ..+..
T Consensus 77 a~iigta~AI~sG~~~e~AialAvPva~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~f 156 (265)
T TIGR00822 77 ASIISTILVISGHQSIGTGIALALPLAAAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPAL 156 (265)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q 045488 160 PMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGVESWKKE-------------------------------- 207 (385)
Q Consensus 160 p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~~~kkE-------------------------------- 207 (385)
.+...|+..-..+.+.+|+|+..-+-+.==..-+.-.-.=-.-+||||
T Consensus 157 la~~~G~~~v~~il~~iP~~v~~Gl~vaggmLPAvGfAmLl~~m~~k~~~~ff~lGF~laayl~l~~l~iAiig~~~A~i 236 (265)
T TIGR00822 157 IVALVSQSAVQAMLKAIPEVVTHGLQIAGGIIVVVGYAMVLRMMFKAYLMPFFYLGFLFAAYTDFSLLAFGAVGGAGALL 236 (265)
T ss_pred HHHHcCHHHHHHHHHHCHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHhhhhcccccCCCccCC
Q 045488 208 ----TITKREAARCLELNEEFKFEPESLS 232 (385)
Q Consensus 208 ----t~~k~e~~~~~~~~~~~~~e~~~~~ 232 (385)
+.++++++.+-+...+.+||++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (265)
T TIGR00822 237 YIQLNPKSHRAQAAPSPAASKNELDDYDD 265 (265)
T ss_pred HHHhccccccccCCCCCCCCccccccccC
No 65
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=31.38 E-value=4.7e+02 Score=25.00 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIII 344 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIV 344 (385)
++.....+++++|+.+..++.+|.||+..+.
T Consensus 246 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 276 (385)
T TIGR00710 246 LLFALNIIAMIFGGFLNGRFIKKWGAKSLLR 276 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3444556677888888888889998877554
No 66
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=31.07 E-value=1.1e+02 Score=24.12 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 045488 320 TIAAIVGQYVVRKLINIFARASIIIFTLS 348 (385)
Q Consensus 320 ~va~~vGq~vv~k~V~k~gR~SiIVf~La 348 (385)
.+++++++....++.+|+||+..++....
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~ 36 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLF 36 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHH
Confidence 34566677777777888888877665443
No 67
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=30.99 E-value=1.3e+02 Score=31.25 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFT 350 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~v 350 (385)
+...+..++.++|+...-++.+|+||+..++..+...
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~ 96 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIM 96 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 5666777888899999999999999998776544333
No 68
>PHA03029 hypothetical protein; Provisional
Probab=30.55 E-value=1.3e+02 Score=24.42 Aligned_cols=41 Identities=29% Similarity=0.583 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccc-----cchhhHHHHHHh--HHHHHH
Q 045488 259 LGLLVAVWAVVLALQIAKNYEVT-----CSVVYWVLNFLQ--IPVAGA 299 (385)
Q Consensus 259 l~~L~~vw~~~l~~~ilrg~~~~-----Cs~~YWvL~~lq--iPv~~~ 299 (385)
+..+-++|-..+.++=.|..++. -..+||.+|++. +|+++.
T Consensus 21 la~igiiwg~llsi~k~raai~qnirsrrkg~ywflnf~fwllp~al~ 68 (92)
T PHA03029 21 LAIIGIIWGFLLSINKIRAAIDQNIRSRRKGLYWFLNFLFWLLPFALA 68 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34455677777766666654322 247999999876 455544
No 69
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=30.40 E-value=4.9e+02 Score=24.83 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q 045488 313 IYFFAVATIAAIVGQYVVRKLINIFARASIIIFTL 347 (385)
Q Consensus 313 l~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~L 347 (385)
-+...+..++..+++...-++.+|+||+..++...
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL 74 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 35566677777888888889999999987765543
No 70
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=30.08 E-value=5.8e+02 Score=25.62 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 045488 319 ATIAAIVGQYVVRKLINIFARASIIIFTLS 348 (385)
Q Consensus 319 ~~va~~vGq~vv~k~V~k~gR~SiIVf~La 348 (385)
.-++.++|..+..++.+|+||+.+++....
T Consensus 315 ~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~ 344 (479)
T PRK10077 315 VGVINLTFTVLAIMTVDKFGRKPLQIIGAL 344 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhHH
Confidence 334556667777788888999987765444
No 71
>COG4280 Predicted membrane protein [Function unknown]
Probab=30.08 E-value=80 Score=30.32 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=29.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 174 VIFADWMITILLIVLLIVMSTKAFLKGVESWK 205 (385)
Q Consensus 174 ~~~p~~~l~~lf~ilLl~~a~~~~~kg~~~~k 205 (385)
..+|-..+++.-.++|++.++|..+|+++.++
T Consensus 59 ~lvPln~lqiv~gvLLllFG~rw~Rsavrr~a 90 (236)
T COG4280 59 YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFA 90 (236)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999888
No 72
>PRK13682 hypothetical protein; Provisional
Probab=30.00 E-value=1.4e+02 Score=22.50 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045488 311 TAIYFFAVATIAAIVGQYVVRK 332 (385)
Q Consensus 311 yal~f~~v~~va~~vGq~vv~k 332 (385)
||+.|.+++.+|++.|-.-+..
T Consensus 4 waliFliiA~iA~~lGF~GiAg 25 (51)
T PRK13682 4 WAIIFLVIALIAAVLGFGGIAG 25 (51)
T ss_pred HHHHHHHHHHHHHHhccchHHH
Confidence 5677888888888877665544
No 73
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=29.72 E-value=3.6e+02 Score=28.27 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045488 312 AIYFFAVATIAAIVGQYVVR 331 (385)
Q Consensus 312 al~f~~v~~va~~vGq~vv~ 331 (385)
.+.-.+.++-.+.++.....
T Consensus 376 ~~~~~l~gltnGy~~s~~m~ 395 (437)
T TIGR00939 376 IILMLLFGFSNGYLGSLSMC 395 (437)
T ss_pred HHHHHHHHHhhhHHHHHHHH
Confidence 33444455555555555444
No 74
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=29.18 E-value=5.7e+02 Score=25.22 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCcc
Q 045488 151 DYDLALLFQPMLVLGISIGVAFNVIFADWMITILLIVLLIVMSTKAFLKGVESWKKETITKREAARCLELNEEFKFEPES 230 (385)
Q Consensus 151 d~~lalll~p~~llG~~iGv~l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~~~kkEt~~k~e~~~~~~~~~~~~~e~~~ 230 (385)
|++....+..++++.+.+|..+...+++.+-.. ..++.-++..|+-.|-.|+... ++ + +
T Consensus 83 ~~~l~~~iii~tiP~~i~Gl~~~~~i~~~l~~~------~~v~~~Lii~gilL~~~~~~~~----~~---~-~------- 141 (268)
T PRK00281 83 DRRLLLLVIVATIPAGVLGLLFKDFIKEHLFSP------IVVAIALIVGGILLLWAEKRKG----PR---V-R------- 141 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHhhc----cC---c-C-------
Confidence 677777888888888888888877766543121 1334445556666666554210 00 0 0
Q ss_pred CCCCCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhccccc----c---------chhhHHHHHHhHHHH
Q 045488 231 LSNDTTPEKTEEPRKSEVSIMQNIYWKELGLLVAVWAVVLALQIAKNYEVT----C---------SVVYWVLNFLQIPVA 297 (385)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~~~~~~~~w~~l~~L~~vw~~~l~~~ilrg~~~~----C---------s~~YWvL~~lqiPv~ 297 (385)
+ .++..|++- +++- .+.++.++-|-+.+ + ..+--.-.++.+|..
T Consensus 142 --------------~-----~~~i~~~~A-l~IG---l~Q~lAliPGiSRSG~TI~~~l~~G~~r~~Aa~fSFLlsiPai 198 (268)
T PRK00281 142 --------------S-----LDDLTYKDA-LLIG---LAQCLALIPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAM 198 (268)
T ss_pred --------------C-----cccCCHHHH-HHHH---HHHHHHhCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 0 012233322 1112 23334444331111 1 123344556679999
Q ss_pred HHHHHHHHHHHH--H--HHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcHHHHHH
Q 045488 298 GAVSAYEAIALD--F--TAIYFFAVATI-AAIVGQYVVRKLINIFARASIIIFT 346 (385)
Q Consensus 298 ~~vt~~~~~~L~--F--yal~f~~v~~v-a~~vGq~vv~k~V~k~gR~SiIVf~ 346 (385)
++.+.++..... . ......+++++ |.++|...++.++|-.+|.|+..|.
T Consensus 199 ~gA~~l~~~~~~~~~~~~~~~~~~~g~i~afi~g~~~I~~ll~~~~~~~~~~F~ 252 (268)
T PRK00281 199 LGASLLDLLKLFHLLSAADLPLLAVGFVVAFVVALIAIKWLLKYIKRHSFTPFA 252 (268)
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceehH
Confidence 999988875442 0 00111244444 4446666777777777777777773
No 75
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=28.55 E-value=1.4e+02 Score=28.35 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 045488 317 AVATIAAIVGQYVVRKLINIFARASIIIFTLSFT 350 (385)
Q Consensus 317 ~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~v 350 (385)
..++++..+|+.+.-++.+|+||+..++..+...
T Consensus 42 ~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 75 (394)
T TIGR00883 42 AAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMM 75 (394)
T ss_pred HHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 4566777788889999999999998877654443
No 76
>PRK09848 glucuronide transporter; Provisional
Probab=28.35 E-value=3.9e+02 Score=26.98 Aligned_cols=26 Identities=4% Similarity=0.222 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHH
Q 045488 319 ATIAAIVGQYVVRKLINIFARASIII 344 (385)
Q Consensus 319 ~~va~~vGq~vv~k~V~k~gR~SiIV 344 (385)
..++.++++.+..++.+|+|++..++
T Consensus 273 ~~~~~~~~~~l~~~l~~r~g~~~~~~ 298 (448)
T PRK09848 273 NLVGTVASAPLVPGMVARIGKKNTFL 298 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 34455556666666666666554443
No 77
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=27.99 E-value=5.6e+02 Score=26.16 Aligned_cols=11 Identities=45% Similarity=0.921 Sum_probs=7.4
Q ss_pred HHhhCCCCCCC
Q 045488 138 LRQRHPTLDIP 148 (385)
Q Consensus 138 l~~~hp~~~~p 148 (385)
+|++||+.++|
T Consensus 370 lr~~~p~~~rp 380 (442)
T TIGR00908 370 LRIRRPDMERP 380 (442)
T ss_pred HHhcCCCCCCC
Confidence 57778776655
No 78
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=27.83 E-value=5.3e+02 Score=24.43 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Q 045488 315 FFAVATIAAIVGQYVVRKLINIFARASIII 344 (385)
Q Consensus 315 f~~v~~va~~vGq~vv~k~V~k~gR~SiIV 344 (385)
...+..+++++++.+..++.+|+||+..++
T Consensus 260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (394)
T TIGR00883 260 VLMLSLILFFITIPLSGALSDRIGRRPVLI 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 344455666777777788888888887554
No 79
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=27.50 E-value=1.5e+02 Score=31.02 Aligned_cols=45 Identities=11% Similarity=0.304 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTIFVSALTL 358 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI~~Sai~m 358 (385)
++..+-.+++.+|+.+.-++.+++||+..+++.....+..+.+.-
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~ 137 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIA 137 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999999877777766666555543
No 80
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=27.30 E-value=5.3e+02 Score=24.27 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 045488 318 VATIAAIVGQYVVRKLINIF 337 (385)
Q Consensus 318 v~~va~~vGq~vv~k~V~k~ 337 (385)
+..+++++|..+.-++.+|.
T Consensus 260 ~~~~~~~~~~~~~g~l~~r~ 279 (379)
T TIGR00881 260 LYELGGLVGTLLAGWLSDKL 279 (379)
T ss_pred HHHHHcchhHHHHHHHHHHH
Confidence 33445556666666666653
No 81
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=26.97 E-value=6.1e+02 Score=24.85 Aligned_cols=15 Identities=33% Similarity=0.837 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 045488 76 WKIVVGAIIGFFGAA 90 (385)
Q Consensus 76 ~~~ivg~iiGfl~g~ 90 (385)
++.+.|..+|-+-+.
T Consensus 34 ~Rll~~A~~Gal~~~ 48 (293)
T PF03419_consen 34 WRLLLGAAIGALYSL 48 (293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677788777766443
No 82
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=26.70 E-value=1.9e+02 Score=29.89 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 045488 316 FAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTI 351 (385)
Q Consensus 316 ~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI 351 (385)
..+.+++..+|+.+.-++.+|+||+..++..+....
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~ 98 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMS 98 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 466778888999999999999999988877665543
No 83
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.63 E-value=4.2e+02 Score=26.72 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccc------chhhHHHHHHhHHHHHHHHHHHHH
Q 045488 253 NIYWKELGLLVAVWAVVLALQIAKNYEVTC------SVVYWVLNFLQIPVAGAVSAYEAI 306 (385)
Q Consensus 253 ~~~w~~l~~L~~vw~~~l~~~ilrg~~~~C------s~~YWvL~~lqiPv~~~vt~~~~~ 306 (385)
+.+|-.+...-+++.++.++..+|.-.++= -+.=|.+.+--+.-+.++..|-+.
T Consensus 99 ~~~w~rfl~~WlmF~~~tafi~~ka~rkp~~g~tpRlVYkwFl~lyklSy~~g~vGyl~i 158 (328)
T KOG1734|consen 99 YMQWYRFLFCWLMFCGFTAFITLKALRKPISGDTPRLVYKWFLFLYKLSYLLGVVGYLAI 158 (328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456765554444444455555555432222 233499988888888888876543
No 84
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=26.58 E-value=1.9e+02 Score=28.73 Aligned_cols=42 Identities=7% Similarity=-0.066 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTIFVSA 355 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI~~Sa 355 (385)
+...+.+++..+++...-++.+|+||+.++...+......+.
T Consensus 48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~ 89 (393)
T PRK09705 48 LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGAL 89 (393)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 444555667778888899999999999998887776554443
No 85
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=26.48 E-value=3.1e+02 Score=26.70 Aligned_cols=38 Identities=8% Similarity=0.431 Sum_probs=17.6
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 172 FNVIFADWMITILLIVLLIVMSTKAFLKGVESWKKETIT 210 (385)
Q Consensus 172 l~~~~p~~~l~~lf~ilLl~~a~~~~~kg~~~~kkEt~~ 210 (385)
++..+|.....+.+.-+.++.++. +.-+.+..|.|...
T Consensus 17 Vla~~p~y~~~~filYfiv~~~i~-~~~~~Rs~rr~~~~ 54 (233)
T PF09973_consen 17 VLAFFPQYYFEVFILYFIVFFGIM-IVMGIRSYRRGRKP 54 (233)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccc
Confidence 333667655444444444444442 23344555544433
No 86
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=26.47 E-value=4.7e+02 Score=27.44 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=14.5
Q ss_pred chHHHHHHH---hcCChhhHhHhh
Q 045488 102 IFLPMLNLI---VGFDAKSSIALS 122 (385)
Q Consensus 102 I~VPiL~l~---~g~~~k~A~~tS 122 (385)
.++|+..-+ +|+|+..+.+..
T Consensus 111 ~~~PI~i~ia~~lG~d~~~~l~~~ 134 (433)
T PRK09412 111 STLPVIAEVAKEQGIRPSRPLSIA 134 (433)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHH
Confidence 377887654 589998877633
No 87
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=26.09 E-value=3.6e+02 Score=26.07 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHH---HHHHHHHHHHHHHHHH
Q 045488 161 MLVLGISIGVAFNVIFADWMITIL---LIVLLIVMSTKAFLKG 200 (385)
Q Consensus 161 ~~llG~~iGv~l~~~~p~~~l~~l---f~ilLl~~a~~~~~kg 200 (385)
+.++|+.+|..+.+.+|++.-..+ +.+..++.++++..|+
T Consensus 10 aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~ 52 (226)
T PF04474_consen 10 AILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKG 52 (226)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 456788888888888888765444 4455566666666665
No 88
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=25.94 E-value=3.9e+02 Score=22.26 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 045488 194 TKAFLKGVESWKKETI 209 (385)
Q Consensus 194 ~~~~~kg~~~~kkEt~ 209 (385)
.|.+-|+++.+|+...
T Consensus 31 ar~lGk~i~~fkk~~~ 46 (90)
T PRK14857 31 GRSLGKTLKGFQEASK 46 (90)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777776644
No 89
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=25.60 E-value=6.4e+02 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 045488 313 IYFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTIF 352 (385)
Q Consensus 313 l~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI~ 352 (385)
.++..+.+++.++|+.+.-.+..|+||+..++..+.....
T Consensus 205 g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i 244 (742)
T TIGR01299 205 GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGF 244 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3566777888899999999999999999887776544443
No 90
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=25.42 E-value=6.7e+02 Score=24.83 Aligned_cols=29 Identities=7% Similarity=0.019 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Q 045488 316 FAVATIAAIVGQYVVRKLINIFARASIII 344 (385)
Q Consensus 316 ~~v~~va~~vGq~vv~k~V~k~gR~SiIV 344 (385)
..+..+++++|..+.-++.+|+||+..++
T Consensus 263 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 263 WGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 33445677788888888999999876543
No 91
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=25.36 E-value=3.8e+02 Score=27.03 Aligned_cols=95 Identities=12% Similarity=0.203 Sum_probs=58.7
Q ss_pred cCChhhHhHhhhHHHHHHHHHHHHHHHHhh---CCCCCC------CcchhHHHHHHHHHHHHHHHHHHHHHh-hchH--H
Q 045488 112 GFDAKSSIALSRCMITGVAASTFVYNLRQR---HPTLDI------PIIDYDLALLFQPMLVLGISIGVAFNV-IFAD--W 179 (385)
Q Consensus 112 g~~~k~A~~tSl~~I~~~sl~~~~~~l~~~---hp~~~~------plId~~lalll~p~~llG~~iGv~l~~-~~p~--~ 179 (385)
++.++-.+|+..+++++.++.=++.|++|+ |+..++ .--.|-..+.+..+++++....+-+-+ .+|+ .
T Consensus 42 ~ig~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~IDVDR~yl~~~pi 121 (296)
T PF10361_consen 42 PIGTRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSIDVDRYYLQGLPI 121 (296)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeeeecHHhcccccH
Confidence 455677788888888888888888888763 222222 223556666666666666666655543 4443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 180 MITILLIVLLIVMSTKAFLKGVESWKK 206 (385)
Q Consensus 180 ~l~~lf~ilLl~~a~~~~~kg~~~~kk 206 (385)
.++.+|--++.-.+.-....+++.|-.
T Consensus 122 il~sfF~~l~~~~~lA~vWE~VRhWGS 148 (296)
T PF10361_consen 122 ILQSFFWYLMQPGTLAAVWEAVRHWGS 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 344444445555555567788888863
No 92
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=25.35 E-value=2e+02 Score=29.02 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSF 349 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~ 349 (385)
+...+-+++.++|+.+.-++.+|+||+..++.....
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l 94 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL 94 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 455666778888999999999999999887665444
No 93
>COG4129 Predicted membrane protein [Function unknown]
Probab=25.15 E-value=7.5e+02 Score=25.26 Aligned_cols=17 Identities=12% Similarity=0.516 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhchH
Q 045488 162 LVLGISIGVAFNVIFAD 178 (385)
Q Consensus 162 ~llG~~iGv~l~~~~p~ 178 (385)
.++|+.++..+|.++|+
T Consensus 133 ~~vG~~~a~lvn~~~~~ 149 (332)
T COG4129 133 VFVGVGVAFLVNLVMPP 149 (332)
T ss_pred HHHHHHHHHHHhhhcCC
Confidence 56788888888887764
No 94
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=25.12 E-value=4.2e+02 Score=28.38 Aligned_cols=99 Identities=23% Similarity=0.317 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 254 IYWKELGLLVAVWAVVLALQIAKNYEVTCSVVYWVLNFLQIPVAGAVSAYEAIALDFTAIYFFAVATIAAIVGQYVVRKL 333 (385)
Q Consensus 254 ~~w~~l~~L~~vw~~~l~~~ilrg~~~~Cs~~YWvL~~lqiPv~~~vt~~~~~~L~Fyal~f~~v~~va~~vGq~vv~k~ 333 (385)
..++|.....-+|...+..-..+.- ..+..||.-..+.= ....+...+-. +...+.+.+++++++...+-+|+
T Consensus 264 ~~~~~a~~dp~vw~~~l~~~~~~lv--~~~~~~~lpl~l~~--~~~~s~~~a~~---ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 264 KGFKEALKDPGVWPFSLCYFFLKLV--NYGFSYWLPLYLKS--NGGYSELQANL---LSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhc--cccHHHHHHHHHHc--CCCcChHHhcc---ccchHHhhhHHHHHHHHHHHHHH
Confidence 4556666666777766654443332 22234443222111 00011111000 23355555666666555555554
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHHhh
Q 045488 334 INIFARASIIIFTLSFTIFVSALTLG 359 (385)
Q Consensus 334 V~k~gR~SiIVf~La~vI~~Sai~m~ 359 (385)
=.-..|+-+++..+.....++.+.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~g~~~l~ 362 (495)
T KOG2533|consen 337 KTIFARRLLFIVFLCLYAIIGAISLL 362 (495)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21234444444444444444544333
No 95
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=24.67 E-value=6.8e+02 Score=24.60 Aligned_cols=33 Identities=9% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFT 346 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~ 346 (385)
....+..++..+++...-++.+|+||+..++..
T Consensus 42 ~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~ 74 (396)
T TIGR00882 42 IVFSCISLFSILFQPLFGLISDKLGLKKHLLWI 74 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 456677788888999999999999999887654
No 96
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=24.46 E-value=2e+02 Score=28.09 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSF 349 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~ 349 (385)
+...+..++..+++...-++.+|+||+-.++.....
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~ 110 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALL 110 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHH
Confidence 455566677888888888999999998876654443
No 97
>PRK11043 putative transporter; Provisional
Probab=24.44 E-value=6.8e+02 Score=24.53 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 045488 313 IYFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFT 350 (385)
Q Consensus 313 l~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~v 350 (385)
-+...+..++..+|+.+.-++.+|+||+.+++..+...
T Consensus 44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 81 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLF 81 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHH
Confidence 34555667777888999999999999999887655433
No 98
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=24.31 E-value=3.2e+02 Score=22.52 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045488 311 TAIYFFAVATIAAIVGQYVVRKL 333 (385)
Q Consensus 311 yal~f~~v~~va~~vGq~vv~k~ 333 (385)
.+..|.+.+++.|.+-..++||.
T Consensus 55 WvvvYT~~s~i~S~iT~~~ir~y 77 (82)
T PF10852_consen 55 WVVVYTIFSFIVSYITLLFIRKY 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999888876654
No 99
>TIGR00895 2A0115 benzoate transport.
Probab=24.17 E-value=2.3e+02 Score=27.09 Aligned_cols=35 Identities=14% Similarity=0.436 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLS 348 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La 348 (385)
+...+..++.++|+.+.-++.+|+||+..++....
T Consensus 56 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 90 (398)
T TIGR00895 56 FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL 90 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 44556667777888888888999999887765543
No 100
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.16 E-value=1.7e+02 Score=21.34 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Q 045488 328 YVVRKLINIFARASIIIFTLSFTIFVSALT 357 (385)
Q Consensus 328 ~vv~k~V~k~gR~SiIVf~La~vI~~Sai~ 357 (385)
...|.+||| |++|+-=|.|.++-+++-++
T Consensus 10 LAMRNMVRK-g~~SL~HF~LT~~gll~~lv 38 (45)
T PF11688_consen 10 LAMRNMVRK-GGTSLFHFGLTAVGLLGFLV 38 (45)
T ss_pred HHHHHHHHc-cCcchhHHHHHHHHHHHHHH
Confidence 345666665 89999999998887776543
No 101
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=24.13 E-value=5e+02 Score=26.78 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=55.8
Q ss_pred chhhHHHHHHhHHHHHHHHHHH-HHH-----H----H---H----HHHHHHHHHHHHHH------HHHHHHHHHHHHhCC
Q 045488 283 SVVYWVLNFLQIPVAGAVSAYE-AIA-----L----D---F----TAIYFFAVATIAAI------VGQYVVRKLINIFAR 339 (385)
Q Consensus 283 s~~YWvL~~lqiPv~~~vt~~~-~~~-----L----~---F----yal~f~~v~~va~~------vGq~vv~k~V~k~gR 339 (385)
.+.||-+.-..+|+++..-++. +.. | - + |++-+.+.=|+++. +|...++. ||.+|
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s--~rsrr 84 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS--KRSRR 84 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc--hhhhH
Confidence 4689999999999988765542 111 1 1 1 77777776666665 67777777 67788
Q ss_pred cHHHHHHHHHHHHHHH-HHhhchhHHHHHHH
Q 045488 340 ASIIIFTLSFTIFVSA-LTLGGVGLAKVIKR 369 (385)
Q Consensus 340 ~SiIVf~La~vI~~Sa-i~m~~~Gi~~~i~~ 369 (385)
+++..++++.++..-- .+++..+..+.+-+
T Consensus 85 ~~vl~~~vag~v~avi~~LIa~TpLG~~li~ 115 (345)
T PF07260_consen 85 KAVLCMAVAGAVAAVIHLLIAWTPLGNYLIN 115 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 8888888777665422 44555555555443
No 102
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=23.81 E-value=2.1e+02 Score=26.81 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTI 351 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI 351 (385)
+...+..++..+++...-++.+|+||+..++.......
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~ 73 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA 73 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence 34444555667777777777888888875555444333
No 103
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=23.42 E-value=1.8e+02 Score=28.74 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHhcCChhhHhHhhhHHHHHHHHHHHHH
Q 045488 73 KFGWKIVVGAIIGFFGAACGSVGGDGGGGIFLPMLNLIVGFDAKSSIALSRCMITGVAASTFVY 136 (385)
Q Consensus 73 ~~~~~~ivg~iiGfl~g~lssl~GIGGG~I~VPiL~l~~g~~~k~A~~tSl~~I~~~sl~~~~~ 136 (385)
|++...++|.++||..-+.+.+.| ||.+-...++ . +.|..+++++++++++.
T Consensus 3 ~md~~t~iGii~g~~~i~~~i~~g-g~~~~~~~~~----~-------~~s~lIV~GGt~~a~li 54 (271)
T PRK06926 3 KFDYLTPVGIFLGITIVVLGVISN-SGLSGFLSFI----D-------LTSILIVTGGLCAALFI 54 (271)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHc-cccchhHHHh----h-------HhHHHHHHHHHHHHHHH
Confidence 456677888888876655555554 3311122222 2 35777888888888864
No 104
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=23.34 E-value=6.3e+02 Score=25.13 Aligned_cols=23 Identities=4% Similarity=0.029 Sum_probs=15.5
Q ss_pred hhccccccCCCCCCcchhhhccC
Q 045488 36 KHEATTESKNDQADPNHVIKISS 58 (385)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~k~~~ 58 (385)
+|.++|+++.--.++.|+.|++|
T Consensus 26 SQsNPNSQVQLAPQmg~~HR~fN 48 (283)
T TIGR01113 26 SQSNPNSQVQLAPQMGNLHRIFN 48 (283)
T ss_pred cCCCCcchhhhchhcccHHHHhh
Confidence 35555555555667888888887
No 105
>PRK10429 melibiose:sodium symporter; Provisional
Probab=23.31 E-value=4.8e+02 Score=26.80 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhCCcHHH
Q 045488 321 IAAIVGQYVVRKLINIFARASII 343 (385)
Q Consensus 321 va~~vGq~vv~k~V~k~gR~SiI 343 (385)
+++++++.+..++.||+||+..+
T Consensus 277 i~~ii~~~~~~~l~~r~gkk~~~ 299 (473)
T PRK10429 277 AANLVTLILFPRLVKSLSRRILW 299 (473)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHH
Confidence 34445555555555566655443
No 106
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=23.22 E-value=3.2e+02 Score=25.61 Aligned_cols=38 Identities=21% Similarity=0.488 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTI 351 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI 351 (385)
++..+..+.++++..+..++.+|+||+..+.......+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 284 (352)
T PF07690_consen 247 LLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLI 284 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 45566667777778888888899998665555444433
No 107
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=23.20 E-value=1.5e+02 Score=24.86 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045488 194 TKAFLKGVESWKKETIT 210 (385)
Q Consensus 194 ~~~~~kg~~~~kkEt~~ 210 (385)
.|.+-|+++.+|+|++.
T Consensus 29 ~r~lGk~ir~fK~a~~~ 45 (92)
T PRK00575 29 ARSLGKSLRIFKSEVKE 45 (92)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45677889999988754
No 108
>COG4125 Predicted membrane protein [Function unknown]
Probab=22.94 E-value=5.7e+02 Score=23.16 Aligned_cols=96 Identities=23% Similarity=0.271 Sum_probs=50.5
Q ss_pred chHHHHHHHhcCChhhHhHhhhHHHHHHHHHHHHHHH-----HhhCCCCCCCcchhHHHHHHHHHHH-HHHHHHHHH-Hh
Q 045488 102 IFLPMLNLIVGFDAKSSIALSRCMITGVAASTFVYNL-----RQRHPTLDIPIIDYDLALLFQPMLV-LGISIGVAF-NV 174 (385)
Q Consensus 102 I~VPiL~l~~g~~~k~A~~tSl~~I~~~sl~~~~~~l-----~~~hp~~~~plId~~lalll~p~~l-lG~~iGv~l-~~ 174 (385)
|..|.+-+++|.|+.+--+.....-..+.+=|.++|. .+++...+...+.---++.++.+.+ ++.++.++- |.
T Consensus 26 I~ap~~A~L~~~p~~~mG~l~i~~atvAm~WN~vyN~lFd~~~rr~~~~rT~~vRv~HAv~FE~gliv~lvP~iAw~L~i 105 (149)
T COG4125 26 ICAPVLALLMGKPILHMGALTILSATVAMIWNFVYNLLFDRAERRMGTRRTLAVRVAHAVGFELGLIVILVPLIAWWLGI 105 (149)
T ss_pred HHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHhhHHHHHHHHH
Confidence 4568888889999877665555544455555555554 2344333334455555666666553 344444432 32
Q ss_pred -hchHHHHHHHHHHHHHHHHHHHHHH
Q 045488 175 -IFADWMITILLIVLLIVMSTKAFLK 199 (385)
Q Consensus 175 -~~p~~~l~~lf~ilLl~~a~~~~~k 199 (385)
.+....+-+-|+ +.+.-+.++++
T Consensus 106 sL~eAl~Ldig~~--lffl~Ytf~fN 129 (149)
T COG4125 106 SLLEALVLDIGLI--LFFLPYTFLFN 129 (149)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 222333333333 44444555554
No 109
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.82 E-value=1.3e+02 Score=31.04 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=26.6
Q ss_pred ccchhhHHHHHHhHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 045488 281 TCSVVYWVLNFLQIPVAGAVSAYEAI--ALD---FTAIYFFAVATIAAIVGQYVVRK 332 (385)
Q Consensus 281 ~Cs~~YWvL~~lqiPv~~~vt~~~~~--~L~---Fyal~f~~v~~va~~vGq~vv~k 332 (385)
+=...+|+|.++.+-+.+++++|-.+ +++ ||-.. ++.||++.++-..+||-
T Consensus 185 p~~~~~~vl~~~fvl~tlaivLFPLWP~~mR~gvyY~si-g~~gfl~~IlvLaIvRl 240 (372)
T KOG2927|consen 185 PRPLMWQVLGVLFVLVTLAIVLFPLWPRRMRQGVYYLSI-GAGGFLAFILVLAIVRL 240 (372)
T ss_pred CCchhHHHHHHHHHHHHHHHHhcccCcHHHhcceeeeec-chhHHHHHHHHHHHHHH
Confidence 34455566555554444444443211 111 22222 67788888888877763
No 110
>PHA01816 hypothetical protein
Probab=22.82 E-value=77 Score=27.93 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 045488 200 GVESWKKETITKREAARCLELN 221 (385)
Q Consensus 200 g~~~~kkEt~~k~e~~~~~~~~ 221 (385)
-...||||.+.++|+++.+-.|
T Consensus 7 emdrwkkerearke~e~~~~~n 28 (160)
T PHA01816 7 EMDRWKKEREARKEQEKDLFLN 28 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999888877654433
No 111
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=22.79 E-value=5.2e+02 Score=22.60 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhhccccccccchHHHHHHHhcCChhhHhHhhhHH
Q 045488 77 KIVVGAIIGFFGAACGSVGGDGGGGIFLPMLNLIVGFDAKSSIALSRCM 125 (385)
Q Consensus 77 ~~ivg~iiGfl~g~lssl~GIGGG~I~VPiL~l~~g~~~k~A~~tSl~~ 125 (385)
+...|..+|++.|++ ==.|...+.+-++..+++.+.-.|...+...
T Consensus 21 ~iA~g~AiG~fig~~---P~~g~~~~l~~~la~~~r~N~~aa~~~~~i~ 66 (154)
T PF09835_consen 21 SIALGFAIGVFIGFL---PIFGLQTVLAIALALLFRLNKPAAILGTWIS 66 (154)
T ss_pred HHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 345577777776643 2236677777777778888777766665553
No 112
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=22.79 E-value=1.8e+02 Score=24.02 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045488 193 STKAFLKGVESWKKETIT 210 (385)
Q Consensus 193 a~~~~~kg~~~~kkEt~~ 210 (385)
..|.+-|+++.+|+|...
T Consensus 27 ~~r~lGk~ir~FK~~~~~ 44 (84)
T PRK00191 27 AARSIGRSMRIFKSEVKE 44 (84)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 355677888888887543
No 113
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=22.70 E-value=6.8e+02 Score=24.75 Aligned_cols=23 Identities=4% Similarity=0.047 Sum_probs=15.6
Q ss_pred hhccccccCCCCCCcchhhhccC
Q 045488 36 KHEATTESKNDQADPNHVIKISS 58 (385)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~k~~~ 58 (385)
+|.++|+++.--.++.|+.|++|
T Consensus 26 SQsNPNSQVQLAPQmg~~HR~fN 48 (269)
T PF04206_consen 26 SQSNPNSQVQLAPQMGNIHRIFN 48 (269)
T ss_pred cCCCCcchhhcchhcCcHHHHHh
Confidence 35555555555667889888887
No 114
>PRK11010 ampG muropeptide transporter; Validated
Probab=22.60 E-value=8.4e+02 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Q 045488 311 TAIYFFAVATIAAIVGQYVVRKLINIFARASI 342 (385)
Q Consensus 311 yal~f~~v~~va~~vGq~vv~k~V~k~gR~Si 342 (385)
.+.++..++.+++++|..+..++.+|+||+..
T Consensus 260 ~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~ 291 (491)
T PRK11010 260 VGLVNKTLGLLATIVGALYGGILMQRLSLFRA 291 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34445567788888998888999999986543
No 115
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.48 E-value=57 Score=31.37 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=40.4
Q ss_pred CCCcchhhhccCC-------CCCCccCccCCCCchhHHHH-HH--------HH----HHHHHHHhhhccccccccchHH
Q 045488 47 QADPNHVIKISSP-------KSRSSYKHIWPDIKFGWKIV-VG--------AI----IGFFGAACGSVGGDGGGGIFLP 105 (385)
Q Consensus 47 ~~~~~~~~k~~~~-------~~~~~~~~~~~~~~~~~~~i-vg--------~i----iGfl~g~lssl~GIGGG~I~VP 105 (385)
....+||...+.| ...+.-+..||..+++|+-- +| .. -+|+++++....||-||.++-=
T Consensus 79 ~~sgsFLs~~f~~gt~~e~app~~a~~p~~~aap~S~rs~~~g~t~~p~paa~~~r~ssFLG~AlqTAAGVAGGMlL~n 157 (233)
T COG3416 79 AGSGSFLSNAFKWGTPQEPAPPANAPPPKEPAAPPSWRSSPAGPTTQPSPAAANTRSSSFLGGALQTAAGVAGGMLLAN 157 (233)
T ss_pred CCCcchhhhhcccCCCCCCCCCcCCCCCCCCCCCCCccccccCCCCCCCccccccccchhHHHHHHHHhhhhhhHHHHH
Confidence 5567788777652 24566677788888887522 22 12 3799999999999999954433
No 116
>PRK15075 citrate-proton symporter; Provisional
Probab=22.32 E-value=2.3e+02 Score=28.54 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhh
Q 045488 317 AVATIAAIVGQYVVRKLINIFARASIIIFTLSFTIFVSALTLG 359 (385)
Q Consensus 317 ~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI~~Sai~m~ 359 (385)
...++...+|+.+.-.+.+|+||+..++..+... .++.++++
T Consensus 63 ~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~l~~ 104 (434)
T PRK15075 63 GAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM-ASGTLLIA 104 (434)
T ss_pred HHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH-HHHHHHHH
Confidence 3344555678888889999999999887766543 33333343
No 117
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=21.76 E-value=1.7e+02 Score=31.36 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=31.5
Q ss_pred HHHHH-HHHHHHHHHhhhcccc-----ccccchHHHHHHHhcCChhhHhHhhhHHHHHHHHHHHHHHHHhhC
Q 045488 77 KIVVG-AIIGFFGAACGSVGGD-----GGGGIFLPMLNLIVGFDAKSSIALSRCMITGVAASTFVYNLRQRH 142 (385)
Q Consensus 77 ~~ivg-~iiGfl~g~lssl~GI-----GGG~I~VPiL~l~~g~~~k~A~~tSl~~I~~~sl~~~~~~l~~~h 142 (385)
+.+.+ ++.|.++|++++++|+ +||++. |.+.+.-+ + -..=.+.+.++-+++.+..+.++|
T Consensus 400 ~~i~a~~iG~avgGa~~~~~gv~~~a~~gg~~~-p~~~~~~~-~----~~~~~~~~vG~~v~a~~~~~~k~~ 465 (482)
T PRK11404 400 PMITANTLAGGITGVLVIAFGIKRLAPGLGIFD-PLIGLMSP-V----GSFYLVLAIGLALNISFIIVLKGL 465 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccccCeee-ecHHhhcc-H----HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44445 4566888888888887 455554 75432211 1 112233344555555555555443
No 118
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=21.74 E-value=4.7e+02 Score=25.56 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 045488 178 DWMITILLIVLLIVMSTKAF---------LKGVESWKKETIT 210 (385)
Q Consensus 178 ~~~l~~lf~ilLl~~a~~~~---------~kg~~~~kkEt~~ 210 (385)
.|++.+.+..|+.++++..- -++.-.||+-.++
T Consensus 41 gwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~ 82 (319)
T KOG3832|consen 41 GWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKK 82 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 57777777766666665421 1345567755443
No 119
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=21.55 E-value=2.6e+02 Score=27.56 Aligned_cols=35 Identities=11% Similarity=-0.032 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q 045488 313 IYFFAVATIAAIVGQYVVRKLINIFARASIIIFTL 347 (385)
Q Consensus 313 l~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~L 347 (385)
..+...+.++.++|..+..++++|+||+..++...
T Consensus 247 ~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~ 281 (390)
T TIGR02718 247 RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV 281 (390)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555566777888888899999999887766443
No 120
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=21.47 E-value=2.9e+02 Score=26.55 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTL 347 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~L 347 (385)
+...+..++..+++...-.+.+|+||+..++...
T Consensus 51 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 51 SLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4445566777788888888899999998777543
No 121
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=21.38 E-value=3.2e+02 Score=29.30 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 045488 317 AVATIAAIVGQYVVRKLINIFARASIIIFTLSFTIFVSALTLGGVGLAKVIKRI 370 (385)
Q Consensus 317 ~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI~~Sai~m~~~Gi~~~i~~~ 370 (385)
.+=++++++|..+...+-+++||+.- .++-.....+++++++..-..+..+.+
T Consensus 67 s~f~iG~~~Gs~~~~~la~~~GRK~~-l~~~~~l~~~~~~~~~~s~~~~~~e~l 119 (485)
T KOG0569|consen 67 SIFFIGGMIGSFSSGLLADRFGRKNA-LLLSNLLAVLAALLMGLSKSAPSFEML 119 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34457888899999999999999943 333334444555555555444544443
No 122
>PF13347 MFS_2: MFS/sugar transport protein
Probab=21.37 E-value=8.3e+02 Score=24.45 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTI 351 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI 351 (385)
.+..+..++++++-.+..++.||+||+..........+
T Consensus 264 ~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 264 IFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAA 301 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHH
Confidence 45567788888888888999999999886665544433
No 123
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=21.23 E-value=1.3e+02 Score=24.16 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 045488 180 MITILLIVLLIVMST------KAFLKGVESWKKETI 209 (385)
Q Consensus 180 ~l~~lf~ilLl~~a~------~~~~kg~~~~kkEt~ 209 (385)
++.++++++|+|-+- |.+-|+++.+|++..
T Consensus 9 lliIl~IvlllFG~kKLPelgr~lGkair~FK~~~~ 44 (73)
T PRK02958 9 WLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMK 44 (73)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444433 346678888887654
No 124
>PRK00259 intracellular septation protein A; Reviewed
Probab=21.18 E-value=5.1e+02 Score=24.02 Aligned_cols=38 Identities=26% Similarity=0.269 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 294 IPVAGAVSAYEAIALDFTAIYFFAVATIAAIVGQYVVRKLINI 336 (385)
Q Consensus 294 iPv~~~vt~~~~~~L~Fyal~f~~v~~va~~vGq~vv~k~V~k 336 (385)
.|+.+.+..|. +++++-+..+++.+.+.|...+++.+|
T Consensus 8 ~P~i~Ffv~y~-----~~gi~~AT~~~i~a~~~~~~~~~~~~~ 45 (179)
T PRK00259 8 LPLILFFAAYK-----LYGIYAATAALIVATVIQLAISWIRYR 45 (179)
T ss_pred HHHHHHHHHHH-----HcCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56655544442 245677777888888888888877555
No 125
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=21.03 E-value=1e+03 Score=25.62 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=21.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 045488 148 PIIDYDLALLFQPMLVLGISIGVAFNVIF 176 (385)
Q Consensus 148 plId~~lalll~p~~llG~~iGv~l~~~~ 176 (385)
|.-.|+.++.=.-..++|+..+..++..+
T Consensus 121 p~~~f~~a~~R~~ei~iGi~~a~~v~~l~ 149 (650)
T PF04632_consen 121 PEQVFDLALWRVLEILIGILCATLVSMLF 149 (650)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777776777788888888888764
No 126
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=20.96 E-value=5.2e+02 Score=27.52 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=67.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHhHHHHHHHHHHHHH-HHHH-----------HHHHHHHHH
Q 045488 252 QNIYWKELGLLVAVWAVVLALQIAKNYEVTCSVVYWVLNFLQIPVAGAVSAYEAI-ALDF-----------TAIYFFAVA 319 (385)
Q Consensus 252 ~~~~w~~l~~L~~vw~~~l~~~ilrg~~~~Cs~~YWvL~~lqiPv~~~vt~~~~~-~L~F-----------yal~f~~v~ 319 (385)
+++.+|+.....++|..+..+.+.-++. ...||++.++. ...+..-.+. |=|| |=-.|...+
T Consensus 313 ~rfg~k~vl~~~lvi~~~~~~~~~~~~~---~~~f~i~gll~---g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltg 386 (438)
T COG2270 313 ERFGSKPVLMIGLVILSIAALYLIFLEG---ELDFWILGLLV---GTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTG 386 (438)
T ss_pred HHhCCceeehHHHHHHHHHHHHHHHccc---cHHHHHHHHHH---HHhcchHHHHHHHHHHHhCCCccccceeehhhhhh
Confidence 4567777788888888888777665533 78999986632 1222222211 1111 222356778
Q ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhh
Q 045488 320 TIAAIVGQYVVRKLINIFARASIIIFTLSFTIFVSALTLG 359 (385)
Q Consensus 320 ~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI~~Sai~m~ 359 (385)
=.+++.|...+--..+.+|....=++.+..+..++.++|.
T Consensus 387 ra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 387 RAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 8999999999999999999777766666666666666554
No 127
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=20.78 E-value=2.2e+02 Score=27.89 Aligned_cols=34 Identities=9% Similarity=0.279 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTL 347 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~L 347 (385)
+...+..++..+++...-++.+|+||+.+++..+
T Consensus 55 ~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~ 88 (399)
T PRK05122 55 LVISLQYLATLLSRPHAGRYADTLGPKKAVVFGL 88 (399)
T ss_pred HHHHHHHHHHHHhchhhHhHHhccCCcchHHHHH
Confidence 4555666777888888999999999998877754
No 128
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=20.66 E-value=1.3e+02 Score=24.32 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 045488 195 KAFLKGVESWKKETI 209 (385)
Q Consensus 195 ~~~~kg~~~~kkEt~ 209 (385)
+.+-|+++.+||+..
T Consensus 30 r~lGk~ik~FKk~~~ 44 (75)
T PRK04561 30 KDLGSAVKEFKKGMH 44 (75)
T ss_pred HHHHHHHHHHHHHhc
Confidence 456678888887654
No 129
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=20.62 E-value=1.4e+02 Score=29.33 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=45.5
Q ss_pred cccchHHHHHHHhcCCh--hhHhHhhhHHHHHHHHHHHHHHHHhhC-CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 045488 99 GGGIFLPMLNLIVGFDA--KSSIALSRCMITGVAASTFVYNLRQRH-PTLDIPIIDYDLALLFQPMLVLGISIGVAFNVI 175 (385)
Q Consensus 99 GG~I~VPiL~l~~g~~~--k~A~~tSl~~I~~~sl~~~~~~l~~~h-p~~~~plId~~lalll~p~~llG~~iGv~l~~~ 175 (385)
-....+|+.-+++++.+ -...+.-..+...+.+...+.+.|++. |..++..++.+..... |......
T Consensus 65 lSi~~~~~~g~~l~~~~~~i~~~~i~~~l~~~t~~~~~~a~~rr~~~~~~~r~~~~~~~~~~~----------~~~~~~~ 134 (287)
T PF07760_consen 65 LSIAIVPLIGLLLNYTPWGIRLIPILISLSIFTLVLSIIAYIRRRRLPEEERFSVPFDRWSSS----------GSYLSNS 134 (287)
T ss_pred HHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHhcccCCccccccccchhcccc----------ccccccc
Confidence 34445566555555433 222233333344555566666667654 6555554544433211 6666667
Q ss_pred chHHHHHHHHHHHHHHHH
Q 045488 176 FADWMITILLIVLLIVMS 193 (385)
Q Consensus 176 ~p~~~l~~lf~ilLl~~a 193 (385)
..+..+.+++++.++...
T Consensus 135 ~~~~~l~viLvi~il~~v 152 (287)
T PF07760_consen 135 RSDNVLNVILVISILAAV 152 (287)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 777777777777444443
No 130
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=20.44 E-value=9.2e+02 Score=24.57 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=20.7
Q ss_pred cchHHHHHHHhcCChhhHhHhhhHHHHHHH
Q 045488 101 GIFLPMLNLIVGFDAKSSIALSRCMITGVA 130 (385)
Q Consensus 101 ~I~VPiL~l~~g~~~k~A~~tSl~~I~~~s 130 (385)
++..|++....|.+..+....-..++..-.
T Consensus 117 ~ll~Pl~~~~~~~~~~~~~~~~~~l~~lK~ 146 (386)
T PF05975_consen 117 LLLLPLLMQVYGFSFWEFLLLLLFLLALKW 146 (386)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 467899987788887777766655554433
No 131
>COG3619 Predicted membrane protein [Function unknown]
Probab=20.35 E-value=5e+02 Score=25.08 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=32.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 045488 147 IPIIDYDLALLFQPMLVLGISIGVAFNVIFADWMITILL 185 (385)
Q Consensus 147 ~plId~~lalll~p~~llG~~iGv~l~~~~p~~~l~~lf 185 (385)
....||..-..+.+..+.|+..|+.+...+-++.+-..-
T Consensus 166 ~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~ 204 (226)
T COG3619 166 EKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVA 204 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 467899999999999999999999999998877654443
No 132
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=20.29 E-value=1.9e+02 Score=31.31 Aligned_cols=41 Identities=29% Similarity=0.263 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 045488 315 FFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTIFVSA 355 (385)
Q Consensus 315 f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI~~Sa 355 (385)
--.++.++.+.||...-.+=.++||++..--.+..+|.-|+
T Consensus 89 Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~ 129 (538)
T KOG0252|consen 89 VNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA 129 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence 45678999999999999999999999988777777766665
No 133
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.08 E-value=4.3e+02 Score=22.79 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHhcCChhhHhHhhhHHH
Q 045488 70 PDIKFGWKIVVGAIIGFFGAACGSVGGDGGGGIFLPMLNLIVGFDAKSSIALSRCMI 126 (385)
Q Consensus 70 ~~~~~~~~~ivg~iiGfl~g~lssl~GIGGG~I~VPiL~l~~g~~~k~A~~tSl~~I 126 (385)
|+++..|+.+...+.=++.|.+ .+.+.++++.-.++-+...+..++++
T Consensus 35 P~~k~pwK~I~la~~Lli~G~~---------li~~g~l~~~~~i~~~~~~~~~llil 82 (115)
T PF05915_consen 35 PKVKIPWKSIALAVFLLIFGTV---------LIIIGLLLFFGHIDGDRDRGWALLIL 82 (115)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcccCCCCcccchHHHH
Confidence 7888889877666655554443 34444555443444445555444444
Done!