Query 045488
Match_columns 385
No_of_seqs 257 out of 1137
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 78.6 44 0.0015 32.0 14.6 24 322-345 324-347 (491)
2 1pw4_A Glycerol-3-phosphate tr 44.6 2E+02 0.0067 26.7 11.9 37 313-349 291-329 (451)
3 2g9p_A Antimicrobial peptide l 41.8 15 0.00052 22.3 2.0 13 330-342 3-15 (26)
4 3o7q_A L-fucose-proton symport 32.9 3E+02 0.01 25.4 22.5 34 314-347 299-332 (438)
5 4gc0_A D-xylose-proton symport 31.5 66 0.0022 30.7 5.9 36 314-349 59-94 (491)
6 4djk_A Probable glutamate/gamm 24.5 4.3E+02 0.015 25.6 10.5 12 137-148 391-402 (511)
7 1pw4_A Glycerol-3-phosphate tr 20.3 1.7E+02 0.0057 27.2 6.3 35 315-349 67-101 (451)
8 3o7q_A L-fucose-proton symport 15.8 6.3E+02 0.022 23.0 9.9 38 314-351 65-102 (438)
9 4aps_A DI-OR tripeptide H+ sym 15.1 2.8E+02 0.0096 26.2 6.6 37 314-350 58-95 (491)
10 2cfq_A Lactose permease; trans 14.5 2.9E+02 0.0098 26.0 6.5 32 314-345 263-294 (417)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=78.56 E-value=44 Score=31.96 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhCCcHHHHH
Q 045488 322 AAIVGQYVVRKLINIFARASIIIF 345 (385)
Q Consensus 322 a~~vGq~vv~k~V~k~gR~SiIVf 345 (385)
..+++..+.-.+++|+||+...+.
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~~ 347 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQII 347 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCcchhcc
Confidence 344444455567788898876653
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=44.61 E-value=2e+02 Score=26.72 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHH
Q 045488 313 IYFFAVATIAAIVGQYVVRKLINIF--ARASIIIFTLSF 349 (385)
Q Consensus 313 l~f~~v~~va~~vGq~vv~k~V~k~--gR~SiIVf~La~ 349 (385)
.++..+..+++++|..+..++.+|+ ||+..++.....
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 3455556677888888888999998 888766544333
No 3
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=41.76 E-value=15 Score=22.26 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=10.6
Q ss_pred HHHHHHHhCCcHH
Q 045488 330 VRKLINIFARASI 342 (385)
Q Consensus 330 v~k~V~k~gR~Si 342 (385)
.-|+|||+||+.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4689999999864
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=32.94 E-value=3e+02 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTL 347 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~L 347 (385)
++..+..+++++|..+..++.+|+||+.+++...
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~ 332 (438)
T 3o7q_A 299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA 332 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4445556677788888888889999988765544
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=31.48 E-value=66 Score=30.70 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSF 349 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~ 349 (385)
+....-+++.++|..+.-++-+|+||+-.++..+..
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l 94 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL 94 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444556778889999999999999999876655443
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=24.50 E-value=4.3e+02 Score=25.58 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=6.6
Q ss_pred HHHhhCCCCCCC
Q 045488 137 NLRQRHPTLDIP 148 (385)
Q Consensus 137 ~l~~~hp~~~~p 148 (385)
.+|+++|..++|
T Consensus 391 ~~r~~~~~~~~~ 402 (511)
T 4djk_A 391 VLVLKHPDLKRT 402 (511)
T ss_dssp HHHHHCCSCCCS
T ss_pred HHHHhCCCCCCC
Confidence 345566655554
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=20.34 E-value=1.7e+02 Score=27.23 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 045488 315 FFAVATIAAIVGQYVVRKLINIFARASIIIFTLSF 349 (385)
Q Consensus 315 f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~ 349 (385)
...+..++..+++...-++.+|+||+..++..+..
T Consensus 67 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 67 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 34455566677777788888889998876655443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=15.85 E-value=6.3e+02 Score=23.04 Aligned_cols=38 Identities=11% Similarity=-0.028 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSFTI 351 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~vI 351 (385)
+...+..++..+++...-++.+|+||+-.++.......
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 45566667777888888899999999988766554443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=15.12 E-value=2.8e+02 Score=26.22 Aligned_cols=37 Identities=3% Similarity=-0.001 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINI-FARASIIIFTLSFT 350 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k-~gR~SiIVf~La~v 350 (385)
+...+..++..+|+.+.-++.+| +||+..++......
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~ 95 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI 95 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45566677778888888899999 79998877655443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=14.53 E-value=2.9e+02 Score=25.96 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIF 345 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf 345 (385)
++..+..++..+|..+..++.+|.||+..++.
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~ 294 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGKNALLL 294 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 34455566777888888999999999987653
Done!