Query 045488
Match_columns 385
No_of_seqs 257 out of 1137
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 03:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045488.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045488hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 78.8 6.8 0.0005 33.1 10.5 66 284-349 7-82 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 75.3 14 0.001 32.2 11.9 31 317-347 66-96 (447)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 44.7 88 0.0064 26.5 16.3 27 314-340 289-315 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 43.8 64 0.0047 26.5 9.8 34 314-347 263-296 (417)
5 d1oeda_ f.36.1.1 (A:) Acetylch 16.7 1.4E+02 0.0099 24.2 6.7 45 113-157 25-71 (227)
6 d3d31c1 f.58.1.1 (C:13-260) Su 4.8 7E+02 0.051 19.3 8.3 28 181-208 131-158 (248)
7 d2nwwa1 f.49.1.1 (A:12-416) Pr 4.7 2.6E+02 0.019 24.8 3.9 16 77-92 4-19 (405)
8 d1gy8a_ c.2.1.2 (A:) Uridine d 4.0 1.5E+02 0.011 25.4 1.5 20 321-340 10-29 (383)
9 d1eq2a_ c.2.1.2 (A:) ADP-L-gly 3.6 1.2E+02 0.0086 24.5 0.3 15 322-336 8-22 (307)
10 d1orra_ c.2.1.2 (A:) CDP-tyvel 3.3 1.5E+02 0.011 24.2 0.9 15 322-336 9-23 (338)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=78.78 E-value=6.8 Score=33.10 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=41.5
Q ss_pred hhhHHHHHHhHHHHHHHHHHHH---HHHH--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 045488 284 VVYWVLNFLQIPVAGAVSAYEA---IALD--F-----TAIYFFAVATIAAIVGQYVVRKLINIFARASIIIFTLSF 349 (385)
Q Consensus 284 ~~YWvL~~lqiPv~~~vt~~~~---~~L~--F-----yal~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~La~ 349 (385)
.-||++.+..+-.......+.. .++. + ..-+...+..++..+++...-++.+|+||+..++.....
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~ 82 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG 82 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 3567776655544444333221 1111 2 334566777888889999999999999999877655443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=75.32 E-value=14 Score=32.17 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q 045488 317 AVATIAAIVGQYVVRKLINIFARASIIIFTL 347 (385)
Q Consensus 317 ~v~~va~~vGq~vv~k~V~k~gR~SiIVf~L 347 (385)
.+-.++..+|+...-++.+|+||+..+++.+
T Consensus 66 s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 96 (447)
T d1pw4a_ 66 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 3445566677778888889999997765543
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=44.73 E-value=88 Score=26.54 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARA 340 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~ 340 (385)
+...+..+++++|..+..++.+|.+|+
T Consensus 289 ~~~~~~~~~~~~~~~~~g~~~~~~~~~ 315 (447)
T d1pw4a_ 289 WAYFLYEYAGIPGTLLCGWMSDKVFRG 315 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred hhhhcchhhhhhhhhhhhhhhhhcccc
Confidence 444445556666777777777777764
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=43.76 E-value=64 Score=26.49 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q 045488 314 YFFAVATIAAIVGQYVVRKLINIFARASIIIFTL 347 (385)
Q Consensus 314 ~f~~v~~va~~vGq~vv~k~V~k~gR~SiIVf~L 347 (385)
....+..++..++..+..++.+|.||+..++...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~ 296 (417)
T d1pv7a_ 263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAG 296 (417)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhcccccccchhhhH
Confidence 4555666777788888888888888887665443
No 5
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=16.72 E-value=1.4e+02 Score=24.20 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=19.4
Q ss_pred CChhhHhHhhhHHHHHHHHHHHHHHHHhhCCCC--CCCcchhHHHHH
Q 045488 113 FDAKSSIALSRCMITGVAASTFVYNLRQRHPTL--DIPIIDYDLALL 157 (385)
Q Consensus 113 ~~~k~A~~tSl~~I~~~sl~~~~~~l~~~hp~~--~~plId~~lall 157 (385)
+|+...-=.++.+...-+++-+.......-|.. ..|+||.-....
T Consensus 25 lp~~s~eRi~l~it~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~ 71 (227)
T d1oeda_ 25 LPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFT 71 (227)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHH
T ss_pred ecCCCCccEEeeHHHHHHHHHHHHHHHHhCCCcccCcCccchHHHHH
Confidence 344443334444433333433333334433321 257777654443
No 6
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=4.76 E-value=7e+02 Score=19.31 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045488 181 ITILLIVLLIVMSTKAFLKGVESWKKET 208 (385)
Q Consensus 181 l~~lf~ilLl~~a~~~~~kg~~~~kkEt 208 (385)
+.+......+-.+.+++..+.++-.+|-
T Consensus 131 iii~~~~~~~p~~~~~~~~~l~~i~~~~ 158 (248)
T d3d31c1 131 IVVAMLFVSMPYLANSAREGFKSVDPRL 158 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred eehhhcccchhhHHHHHHHHHHhcchhH
Confidence 4444444555556666677777666553
No 7
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.65 E-value=2.6e+02 Score=24.77 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 045488 77 KIVVGAIIGFFGAACG 92 (385)
Q Consensus 77 ~~ivg~iiGfl~g~ls 92 (385)
+.++|+++|.+.|.+.
T Consensus 4 rili~lv~Gi~~G~~~ 19 (405)
T d2nwwa1 4 KILIGLILGAIVGLIL 19 (405)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677888887777653
No 8
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}
Probab=3.95 E-value=1.5e+02 Score=25.40 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhCCc
Q 045488 321 IAAIVGQYVVRKLINIFARA 340 (385)
Q Consensus 321 va~~vGq~vv~k~V~k~gR~ 340 (385)
.++++|++++++++++.|..
T Consensus 10 ~tGfIGs~lv~~LL~~~~~~ 29 (383)
T d1gy8a_ 10 GAGYIGSHFVRALLRDTNHS 29 (383)
T ss_dssp TTSHHHHHHHHHHHHHCCCE
T ss_pred CCcHHHHHHHHHHHHhCCCE
Confidence 36799999999999876653
No 9
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}
Probab=3.62 E-value=1.2e+02 Score=24.52 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHH
Q 045488 322 AAIVGQYVVRKLINI 336 (385)
Q Consensus 322 a~~vGq~vv~k~V~k 336 (385)
++++|.+++++++++
T Consensus 8 sGfIGs~lv~~L~~~ 22 (307)
T d1eq2a_ 8 AGFIGSNIVKALNDK 22 (307)
T ss_dssp TSHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhC
Confidence 678999999999877
No 10
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}
Probab=3.33 E-value=1.5e+02 Score=24.24 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHH
Q 045488 322 AAIVGQYVVRKLINI 336 (385)
Q Consensus 322 a~~vGq~vv~k~V~k 336 (385)
++++|++++++++++
T Consensus 9 tGfIGs~lv~~Ll~~ 23 (338)
T d1orra_ 9 CGFLGSNLASFALSQ 23 (338)
T ss_dssp TSHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHC
Confidence 578999999999876
Done!