BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045490
         (200 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OLQ|A Chain A, The Crystal Structure Of A Universal Stress Protein E From
           Proteus Mirabilis Hi4320
          Length = 319

 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 16/83 (19%)

Query: 101 KLRVHVEKVHTESGNKAAII--LSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSK 158
           K  +  EK H + G    +I  + +    G+ +L I  R  LS A LG            
Sbjct: 239 KFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLG------------ 286

Query: 159 GVDTAEYLIQNSKCNCVGVQRKG 181
             +TAE LI + KC+ + ++  G
Sbjct: 287 --NTAEQLIDHIKCDLLAIKPDG 307


>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
           Synthase With Hmg- Coa And With Acetoacetyl-Coa And
           Acetylated Cysteine
          Length = 388

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 90  EMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVD 130
           EMK+AC  A P +++  + + T    K  +I + +  +G++
Sbjct: 106 EMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLN 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,808,560
Number of Sequences: 62578
Number of extensions: 146457
Number of successful extensions: 279
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 3
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)