BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045490
         (200 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0CFJ0|MEP_ASPTN Extracellular metalloproteinase mep OS=Aspergillus terreus (strain
           NIH 2624 / FGSC A1156) GN=mep PE=2 SV=1
          Length = 633

 Score = 37.0 bits (84), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 35/77 (45%)

Query: 55  ITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESG 114
           +T  R P N++YT+  + +  S       GED++E  K+  +   P     V   H    
Sbjct: 34  LTPYRLPGNAEYTSSRTSAMRSLLFERADGEDYVETAKKVLQSVHPDATFRVIDDHYVGD 93

Query: 115 NKAAIILSQSTAHGVDL 131
           N  A +    TAHG+D+
Sbjct: 94  NGVAHVHLLQTAHGIDI 110


>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
           PE=1 SV=2
          Length = 1386

 Score = 33.9 bits (76), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 20  ESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPA 70
           E++  + Y+L  +L EE E+V L  +T + + +P + FL  PS ++   PA
Sbjct: 402 ETSEPVVYSLITLLEEESEIVKLLTNTHHKYSDPPVNFLPVPSRTRINNPA 452


>sp|P45680|USPA2_COXBU Universal stress protein A homolog 2 OS=Coxiella burnetii (strain
           RSA 493 / Nine Mile phase I) GN=uspA2 PE=1 SV=1
          Length = 146

 Score = 31.2 bits (69), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 25/153 (16%)

Query: 39  LVLLHVDTPNSWKNPFITFLRKPSNSQ----YTTPASLSSSSEGAA--APGGED----FL 88
           LV L +D PNS   P +   ++ S ++    Y   A    SS GAA     G D     L
Sbjct: 8   LVALALD-PNS-DRPLVEKAKELSANRDAQLYLIHAVEHLSSYGAAYGVAAGVDVEDMLL 65

Query: 89  EEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYR 148
           EE K+       +L +  +    + G    +IL Q+   GVDL+I+G            R
Sbjct: 66  EEAKKRMNEIASQLNISSDHQIVKVGPAKFLILEQAKNWGVDLIIVGSHG---------R 116

Query: 149 RAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181
                L GS    T+  ++  +KC+ + V+ KG
Sbjct: 117 HGIQLLLGS----TSNAVLHGAKCDVLAVRIKG 145


>sp|Q6ZWR6|SYNE1_MOUSE Nesprin-1 OS=Mus musculus GN=Syne1 PE=1 SV=2
          Length = 8799

 Score = 30.8 bits (68), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 14   IADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKN 52
            + DP R++ GA   AL  +    D    + VD P+ WK+
Sbjct: 1090 VQDPVRDTCGACHTALKELKASIDNTYTMLVDDPDKWKD 1128


>sp|Q9UJY5|GGA1_HUMAN ADP-ribosylation factor-binding protein GGA1 OS=Homo sapiens
           GN=GGA1 PE=1 SV=1
          Length = 639

 Score = 30.8 bits (68), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 62  SNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQACEVAKPKL 102
           +N +  T   +S S  GAAA   ED ++E+ Q CE  +P L
Sbjct: 223 NNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 263


>sp|Q8R0H9|GGA1_MOUSE ADP-ribosylation factor-binding protein GGA1 OS=Mus musculus
           GN=Gga1 PE=1 SV=1
          Length = 635

 Score = 30.4 bits (67), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 74  SSSEGAAAPGGEDFLEEMKQACEVAKPKL 102
           S S+GAA+   ED ++E+ Q CE  +P L
Sbjct: 234 SHSQGAASSSSEDLMKELYQRCERMRPTL 262


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,536,572
Number of Sequences: 539616
Number of extensions: 2976575
Number of successful extensions: 6686
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6672
Number of HSP's gapped (non-prelim): 21
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)