Query 045490
Match_columns 200
No_of_seqs 111 out of 1509
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:38:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15005 universal stress prot 99.9 6.6E-24 1.4E-28 159.4 14.6 141 7-178 1-144 (144)
2 PRK15456 universal stress prot 99.9 1.6E-23 3.6E-28 157.4 14.5 139 7-178 1-142 (142)
3 cd01989 STK_N The N-terminal d 99.9 5.6E-23 1.2E-27 154.7 13.0 141 10-179 1-145 (146)
4 PRK15118 universal stress glob 99.9 4E-23 8.8E-28 155.4 11.1 140 6-181 1-141 (144)
5 PRK09982 universal stress prot 99.9 8.5E-23 1.8E-27 153.9 12.3 140 6-181 1-141 (142)
6 PRK10116 universal stress prot 99.9 6E-21 1.3E-25 143.0 12.2 137 6-181 1-141 (142)
7 cd01988 Na_H_Antiporter_C The 99.8 5E-20 1.1E-24 135.6 14.4 130 10-178 1-132 (132)
8 PF00582 Usp: Universal stress 99.8 7.7E-21 1.7E-25 139.4 8.7 131 7-178 1-140 (140)
9 PRK11175 universal stress prot 99.8 4.9E-20 1.1E-24 154.5 12.9 150 6-190 1-159 (305)
10 cd01987 USP_OKCHK USP domain i 99.8 1.8E-19 3.9E-24 132.0 12.4 120 10-177 1-123 (124)
11 PRK11175 universal stress prot 99.8 4.6E-18 1E-22 142.6 13.7 143 6-182 150-303 (305)
12 COG0589 UspA Universal stress 99.7 4.9E-16 1.1E-20 116.4 14.6 147 5-180 2-153 (154)
13 cd00293 USP_Like Usp: Universa 99.7 2.5E-16 5.5E-21 114.1 12.1 128 10-177 1-130 (130)
14 PRK12652 putative monovalent c 99.5 6E-14 1.3E-18 120.3 11.7 109 5-137 2-122 (357)
15 PRK10490 sensor protein KdpD; 99.2 8.6E-10 1.9E-14 105.2 15.6 128 5-181 247-376 (895)
16 COG2205 KdpD Osmosensitive K+ 99.0 5.2E-09 1.1E-13 96.4 13.6 131 4-182 244-377 (890)
17 cd01984 AANH_like Adenine nucl 98.0 2.8E-05 6E-10 53.0 7.4 83 11-176 1-85 (86)
18 PLN03159 cation/H(+) antiporte 97.6 0.0055 1.2E-07 58.6 16.9 159 6-182 456-618 (832)
19 PLN03159 cation/H(+) antiporte 97.1 0.011 2.5E-07 56.5 12.9 161 8-182 630-797 (832)
20 TIGR02432 lysidine_TilS_N tRNA 96.9 0.018 3.9E-07 44.9 10.6 93 10-138 1-109 (189)
21 PF01171 ATP_bind_3: PP-loop f 96.3 0.1 2.3E-06 40.5 11.6 93 10-138 1-106 (182)
22 cd01992 PP-ATPase N-terminal d 95.9 0.15 3.1E-06 39.4 10.4 93 10-138 1-106 (185)
23 PRK12342 hypothetical protein; 95.8 0.15 3.2E-06 42.2 10.3 84 17-138 33-119 (254)
24 PRK03359 putative electron tra 95.3 0.3 6.5E-06 40.4 10.5 85 17-138 34-122 (256)
25 PF01012 ETF: Electron transfe 94.8 0.11 2.5E-06 39.5 6.5 92 10-138 1-100 (164)
26 cd01993 Alpha_ANH_like_II This 94.4 0.86 1.9E-05 34.9 10.7 36 10-45 1-38 (185)
27 COG2086 FixA Electron transfer 93.7 0.69 1.5E-05 38.3 9.2 85 15-138 33-121 (260)
28 cd01985 ETF The electron trans 93.4 2.5 5.5E-05 32.6 11.7 22 117-138 80-101 (181)
29 COG0037 MesJ tRNA(Ile)-lysidin 92.8 1.7 3.7E-05 36.1 10.5 36 8-45 21-56 (298)
30 PF02601 Exonuc_VII_L: Exonucl 90.6 1.2 2.7E-05 37.7 7.4 79 86-177 26-113 (319)
31 PRK10696 tRNA 2-thiocytidine b 90.1 6.9 0.00015 32.1 11.2 39 7-45 28-68 (258)
32 COG0299 PurN Folate-dependent 89.0 9.5 0.00021 30.3 10.6 83 9-136 1-87 (200)
33 TIGR00268 conserved hypothetic 88.7 6.8 0.00015 32.0 10.2 35 7-45 11-45 (252)
34 TIGR00591 phr2 photolyase PhrI 88.5 2.4 5.3E-05 37.7 8.0 91 16-137 32-122 (454)
35 PF00731 AIRC: AIR carboxylase 87.9 6.2 0.00013 29.9 8.7 75 84-182 12-89 (150)
36 PRK05253 sulfate adenylyltrans 87.6 8.7 0.00019 32.5 10.4 38 8-45 27-64 (301)
37 COG0041 PurE Phosphoribosylcar 85.5 7.2 0.00016 29.7 7.8 74 85-182 15-91 (162)
38 PRK00286 xseA exodeoxyribonucl 85.5 3.7 8E-05 36.4 7.4 79 86-177 147-230 (438)
39 TIGR01162 purE phosphoribosyla 84.3 12 0.00026 28.6 8.6 74 85-182 11-87 (156)
40 PRK13820 argininosuccinate syn 83.9 22 0.00047 31.4 11.2 36 7-45 1-37 (394)
41 TIGR00237 xseA exodeoxyribonuc 83.8 5.6 0.00012 35.4 7.7 80 86-177 141-225 (432)
42 cd01990 Alpha_ANH_like_I This 83.2 18 0.00038 28.2 9.7 32 11-45 1-32 (202)
43 COG1570 XseA Exonuclease VII, 81.5 6.9 0.00015 34.9 7.2 78 87-176 148-230 (440)
44 cd06533 Glyco_transf_WecG_TagA 81.4 5.7 0.00012 30.5 6.1 54 85-138 56-109 (171)
45 cd01712 ThiI ThiI is required 80.6 23 0.0005 27.0 10.7 32 10-45 1-32 (177)
46 PLN00200 argininosuccinate syn 79.6 27 0.00059 30.9 10.4 36 7-45 4-39 (404)
47 PF13167 GTP-bdg_N: GTP-bindin 79.6 8 0.00017 27.0 5.7 52 84-137 6-66 (95)
48 PRK10660 tilS tRNA(Ile)-lysidi 79.1 18 0.0004 32.2 9.3 39 7-45 14-53 (436)
49 COG1927 Mtd Coenzyme F420-depe 79.0 16 0.00036 29.4 7.9 63 102-181 30-97 (277)
50 PF03808 Glyco_tran_WecB: Glyc 78.6 7.9 0.00017 29.8 6.1 54 85-138 58-111 (172)
51 PF00875 DNA_photolyase: DNA p 78.2 5.4 0.00012 30.2 5.0 47 85-138 52-98 (165)
52 cd01713 PAPS_reductase This do 77.8 25 0.00055 25.8 10.4 35 10-45 1-35 (173)
53 cd01995 ExsB ExsB is a transcr 76.2 31 0.00066 26.0 10.1 84 10-138 1-86 (169)
54 TIGR02039 CysD sulfate adenyly 75.7 48 0.001 28.0 10.5 38 8-45 19-56 (294)
55 TIGR00342 thiazole biosynthesi 75.2 55 0.0012 28.5 11.0 35 7-45 171-205 (371)
56 KOG1650 Predicted K+/H+-antipo 75.0 15 0.00033 35.2 8.0 41 8-48 614-654 (769)
57 PF02844 GARS_N: Phosphoribosy 74.5 3.1 6.7E-05 29.4 2.5 23 116-138 50-72 (100)
58 TIGR00032 argG argininosuccina 73.2 52 0.0011 29.0 10.4 32 10-45 1-32 (394)
59 cd01986 Alpha_ANH_like Adenine 73.1 27 0.0006 24.0 8.3 31 11-45 1-31 (103)
60 TIGR02765 crypto_DASH cryptoch 72.3 26 0.00057 30.9 8.5 96 16-137 10-105 (429)
61 TIGR00696 wecB_tagA_cpsF bacte 71.9 14 0.00031 28.6 6.0 50 85-138 58-110 (177)
62 PRK14665 mnmA tRNA-specific 2- 69.9 74 0.0016 27.7 12.0 35 7-45 4-38 (360)
63 TIGR03556 photolyase_8HDF deox 69.5 22 0.00047 32.0 7.4 90 16-137 10-99 (471)
64 PRK12563 sulfate adenylyltrans 68.5 75 0.0016 27.1 10.0 38 8-45 37-74 (312)
65 PRK00994 F420-dependent methyl 68.2 16 0.00036 29.9 5.6 48 117-180 49-96 (277)
66 COG1066 Sms Predicted ATP-depe 67.7 88 0.0019 28.0 10.4 55 116-181 156-220 (456)
67 PRK04527 argininosuccinate syn 67.1 51 0.0011 29.2 9.0 35 7-45 1-35 (400)
68 PRK00766 hypothetical protein; 66.8 19 0.00041 28.6 5.7 62 103-181 42-110 (194)
69 PRK00509 argininosuccinate syn 66.2 95 0.0021 27.5 10.9 36 7-45 1-36 (399)
70 PRK05579 bifunctional phosphop 65.9 43 0.00093 29.5 8.3 38 6-44 4-41 (399)
71 PRK13982 bifunctional SbtC-lik 65.9 42 0.00092 30.4 8.4 37 7-44 69-105 (475)
72 TIGR00884 guaA_Cterm GMP synth 61.8 1E+02 0.0022 26.2 11.2 35 8-45 16-50 (311)
73 PRK08349 hypothetical protein; 61.3 76 0.0017 24.7 10.3 33 9-45 1-33 (198)
74 PRK15424 propionate catabolism 59.9 26 0.00057 32.2 6.1 73 82-183 20-95 (538)
75 cd08550 GlyDH-like Glycerol_de 59.8 49 0.0011 28.3 7.5 71 87-181 37-111 (349)
76 PRK00109 Holliday junction res 58.6 15 0.00033 27.3 3.7 48 116-178 42-96 (138)
77 PRK00919 GMP synthase subunit 58.0 1.2E+02 0.0026 25.8 9.8 35 8-45 21-55 (307)
78 PRK00143 mnmA tRNA-specific 2- 57.0 1.3E+02 0.0028 25.9 11.9 33 9-45 1-33 (346)
79 cd01994 Alpha_ANH_like_IV This 56.9 94 0.002 24.4 10.3 32 10-45 1-32 (194)
80 cd01997 GMP_synthase_C The C-t 55.3 1.3E+02 0.0028 25.4 10.9 33 10-45 1-33 (295)
81 cd01714 ETF_beta The electron 55.2 1E+02 0.0022 24.3 10.3 32 13-44 29-60 (202)
82 PRK12755 phospho-2-dehydro-3-d 55.1 1.4E+02 0.0031 25.9 10.3 133 9-181 53-191 (353)
83 PF02568 ThiI: Thiamine biosyn 55.0 1.1E+02 0.0023 24.3 9.2 34 8-45 3-36 (197)
84 PRK01269 tRNA s(4)U8 sulfurtra 54.9 1.6E+02 0.0035 26.5 11.5 35 7-45 176-210 (482)
85 cd01715 ETF_alpha The electron 54.8 22 0.00049 26.9 4.2 23 116-138 71-93 (168)
86 PRK06027 purU formyltetrahydro 54.2 1.3E+02 0.0028 25.2 9.9 21 116-136 153-173 (286)
87 TIGR02329 propionate_PrpR prop 54.1 46 0.001 30.5 6.7 69 86-183 14-85 (526)
88 cd03557 L-arabinose_isomerase 53.5 81 0.0018 28.6 8.0 47 117-181 51-101 (484)
89 PRK03692 putative UDP-N-acetyl 52.7 76 0.0016 26.0 7.1 50 85-138 115-167 (243)
90 cd02067 B12-binding B12 bindin 52.0 72 0.0016 22.4 6.3 33 103-137 27-59 (119)
91 PRK08576 hypothetical protein; 50.5 1.9E+02 0.0041 26.0 10.2 32 10-45 236-267 (438)
92 TIGR00930 2a30 K-Cl cotranspor 50.2 2.5E+02 0.0053 27.9 11.3 97 9-138 576-677 (953)
93 TIGR00655 PurU formyltetrahydr 50.0 1.5E+02 0.0033 24.7 9.9 37 7-44 83-119 (280)
94 PRK14664 tRNA-specific 2-thiou 49.6 1.8E+02 0.0038 25.4 11.4 33 8-44 5-37 (362)
95 PF07355 GRDB: Glycine/sarcosi 49.5 20 0.00044 31.0 3.4 52 116-181 68-121 (349)
96 COG0415 PhrB Deoxyribodipyrimi 49.4 1E+02 0.0022 27.8 7.9 89 16-137 11-99 (461)
97 PRK08091 ribulose-phosphate 3- 49.0 1.4E+02 0.0031 24.2 8.1 27 110-137 183-209 (228)
98 PRK09590 celB cellobiose phosp 48.9 59 0.0013 22.9 5.2 70 87-182 17-86 (104)
99 PF01993 MTD: methylene-5,6,7, 48.7 27 0.00059 28.8 3.8 47 118-180 49-95 (276)
100 COG0452 Dfp Phosphopantothenoy 48.6 66 0.0014 28.3 6.6 37 7-44 3-39 (392)
101 TIGR00250 RNAse_H_YqgF RNAse H 48.4 28 0.00061 25.6 3.6 48 116-178 36-90 (130)
102 PF02887 PK_C: Pyruvate kinase 48.2 47 0.001 23.5 4.8 45 116-181 4-49 (117)
103 PF03652 UPF0081: Uncharacteri 48.1 47 0.001 24.5 4.8 51 115-180 38-96 (135)
104 PF11215 DUF3010: Protein of u 48.0 64 0.0014 24.2 5.4 52 117-179 50-102 (138)
105 TIGR00853 pts-lac PTS system, 47.8 47 0.001 22.9 4.5 68 87-182 19-86 (95)
106 PLN02948 phosphoribosylaminoim 47.5 96 0.0021 28.8 7.7 74 84-181 422-498 (577)
107 PF14639 YqgF: Holliday-juncti 46.9 21 0.00045 27.0 2.8 20 117-136 52-71 (150)
108 PRK02929 L-arabinose isomerase 46.9 2.1E+02 0.0045 26.2 9.6 48 117-182 57-108 (499)
109 PRK10674 deoxyribodipyrimidine 45.1 1.9E+02 0.004 26.0 9.1 90 16-136 11-104 (472)
110 cd08173 Gro1PDH Sn-glycerol-1- 44.8 91 0.002 26.5 6.8 71 87-181 40-112 (339)
111 PF05582 Peptidase_U57: YabG p 44.3 46 0.001 28.0 4.6 37 102-138 128-164 (287)
112 COG1922 WecG Teichoic acid bio 44.1 88 0.0019 25.9 6.2 54 85-138 118-171 (253)
113 PRK13010 purU formyltetrahydro 43.6 2E+02 0.0043 24.2 10.2 83 7-136 92-177 (289)
114 TIGR00640 acid_CoA_mut_C methy 43.1 51 0.0011 24.2 4.3 34 103-138 30-63 (132)
115 cd05565 PTS_IIB_lactose PTS_II 43.0 59 0.0013 22.7 4.4 67 86-180 15-81 (99)
116 COG1597 LCB5 Sphingosine kinas 43.0 93 0.002 26.2 6.5 52 83-138 17-68 (301)
117 COG2201 CheB Chemotaxis respon 42.3 1.6E+02 0.0035 25.6 7.8 55 110-181 30-84 (350)
118 COG1606 ATP-utilizing enzymes 41.9 2.1E+02 0.0045 23.9 11.0 92 9-138 18-123 (269)
119 cd03364 TOPRIM_DnaG_primases T 41.8 63 0.0014 21.0 4.3 34 8-41 43-76 (79)
120 PRK11106 queuosine biosynthesi 41.6 1.9E+02 0.0041 23.4 10.1 33 9-45 2-34 (231)
121 PRK00074 guaA GMP synthase; Re 41.4 2.8E+02 0.0061 25.3 10.9 35 8-45 215-249 (511)
122 COG1440 CelA Phosphotransferas 41.3 97 0.0021 21.9 5.2 37 128-182 48-84 (102)
123 PF03746 LamB_YcsF: LamB/YcsF 41.0 2E+02 0.0044 23.6 8.0 120 11-177 30-162 (242)
124 PF10808 DUF2542: Protein of u 40.8 22 0.00049 23.6 1.8 21 162-182 31-51 (79)
125 cd02071 MM_CoA_mut_B12_BD meth 40.5 1.2E+02 0.0027 21.5 6.0 34 103-138 27-60 (122)
126 PRK09261 phospho-2-dehydro-3-d 40.3 2.5E+02 0.0054 24.4 9.4 134 9-182 52-191 (349)
127 TIGR02855 spore_yabG sporulati 40.3 61 0.0013 27.2 4.7 36 103-138 128-163 (283)
128 cd01998 tRNA_Me_trans tRNA met 40.2 2.4E+02 0.0052 24.2 10.9 32 10-45 1-32 (349)
129 PF02441 Flavoprotein: Flavopr 40.0 56 0.0012 23.5 4.1 35 9-44 1-35 (129)
130 PRK05406 LamB/YcsF family prot 39.5 2.2E+02 0.0047 23.5 8.5 65 86-176 90-163 (246)
131 PRK06029 3-octaprenyl-4-hydrox 39.5 50 0.0011 25.9 4.0 36 9-44 2-37 (185)
132 cd01996 Alpha_ANH_like_III Thi 39.3 1.5E+02 0.0033 21.6 9.9 33 10-45 3-35 (154)
133 cd07044 CofD_YvcK Family of Co 39.1 44 0.00095 28.5 3.8 49 115-180 163-215 (309)
134 cd07186 CofD_like LPPG:FO 2-ph 38.7 87 0.0019 26.6 5.5 49 115-179 172-223 (303)
135 cd08171 GlyDH-like2 Glycerol d 38.4 1.6E+02 0.0035 25.1 7.4 45 117-181 67-112 (345)
136 TIGR00289 conserved hypothetic 38.3 2.1E+02 0.0046 23.1 10.8 22 10-31 2-23 (222)
137 PF13662 Toprim_4: Toprim doma 38.0 41 0.00089 22.0 2.9 33 8-40 46-78 (81)
138 PRK09423 gldA glycerol dehydro 37.4 2.7E+02 0.0058 24.0 10.5 17 117-133 73-89 (366)
139 COG3969 Predicted phosphoadeno 37.3 57 0.0012 28.4 4.2 40 6-45 25-65 (407)
140 PRK11914 diacylglycerol kinase 37.2 2.1E+02 0.0046 23.8 7.8 47 86-136 26-72 (306)
141 PRK05920 aromatic acid decarbo 36.8 66 0.0014 25.7 4.3 37 7-44 2-38 (204)
142 COG0420 SbcD DNA repair exonuc 36.8 59 0.0013 28.2 4.4 13 85-97 26-38 (390)
143 PF02310 B12-binding: B12 bind 36.7 1.4E+02 0.0031 20.6 7.7 44 88-137 17-60 (121)
144 PRK10415 tRNA-dihydrouridine s 36.6 1.5E+02 0.0034 25.1 6.9 65 104-179 134-202 (321)
145 cd01974 Nitrogenase_MoFe_beta 36.5 3E+02 0.0066 24.3 12.3 40 117-181 366-405 (435)
146 cd02072 Glm_B12_BD B12 binding 36.2 77 0.0017 23.3 4.3 33 103-137 27-59 (128)
147 TIGR00420 trmU tRNA (5-methyla 35.6 2.9E+02 0.0063 23.8 11.3 33 9-45 1-33 (352)
148 cd01971 Nitrogenase_VnfN_like 35.1 74 0.0016 28.1 4.8 25 113-138 102-126 (427)
149 TIGR01917 gly_red_sel_B glycin 34.9 48 0.001 29.5 3.5 51 116-180 64-116 (431)
150 TIGR01918 various_sel_PB selen 34.7 48 0.0011 29.5 3.5 51 116-180 64-116 (431)
151 PRK14057 epimerase; Provisiona 33.6 2.8E+02 0.006 23.0 10.1 27 110-137 197-223 (254)
152 TIGR01501 MthylAspMutase methy 33.5 1.3E+02 0.0029 22.2 5.2 34 103-138 29-62 (134)
153 TIGR01826 CofD_related conserv 32.8 76 0.0016 27.1 4.3 48 116-180 162-213 (310)
154 PRK08745 ribulose-phosphate 3- 32.5 2.7E+02 0.0058 22.5 11.3 27 110-137 175-201 (223)
155 TIGR02766 crypt_chrom_pln cryp 32.4 2.9E+02 0.0063 24.7 8.2 45 86-137 51-96 (475)
156 TIGR01769 GGGP geranylgeranylg 32.4 1.5E+02 0.0033 23.6 5.8 51 118-182 14-64 (205)
157 PLN02331 phosphoribosylglycina 32.2 2.6E+02 0.0056 22.2 10.2 20 117-136 67-86 (207)
158 PF01933 UPF0052: Uncharacteri 32.2 58 0.0013 27.6 3.5 49 115-180 172-224 (300)
159 PRK14561 hypothetical protein; 32.0 2.5E+02 0.0053 21.9 9.7 31 9-44 1-31 (194)
160 PF04244 DPRP: Deoxyribodipyri 31.7 2.5E+02 0.0055 22.6 7.0 76 86-182 49-128 (224)
161 PF01949 DUF99: Protein of unk 31.7 71 0.0015 25.1 3.7 64 103-183 36-103 (187)
162 TIGR01917 gly_red_sel_B glycin 31.1 1E+02 0.0022 27.5 4.9 52 116-182 324-375 (431)
163 COG2099 CobK Precorrin-6x redu 30.9 73 0.0016 26.4 3.7 52 116-183 54-105 (257)
164 TIGR00646 MG010 DNA primase-re 30.7 1.8E+02 0.0039 23.5 5.9 37 8-44 154-190 (218)
165 PRK02261 methylaspartate mutas 30.5 2.2E+02 0.0048 20.9 6.6 34 103-138 31-64 (137)
166 COG0503 Apt Adenine/guanine ph 30.2 1.6E+02 0.0034 22.8 5.4 45 118-182 43-87 (179)
167 cd02070 corrinoid_protein_B12- 29.9 2.1E+02 0.0047 22.3 6.3 23 115-137 120-142 (201)
168 COG0036 Rpe Pentose-5-phosphat 29.9 2E+02 0.0044 23.3 6.1 26 110-136 173-198 (220)
169 COG2262 HflX GTPases [General 29.8 1.5E+02 0.0032 26.4 5.7 52 84-137 18-78 (411)
170 COG1646 Predicted phosphate-bi 29.8 97 0.0021 25.4 4.2 52 116-182 29-81 (240)
171 PF00834 Ribul_P_3_epim: Ribul 29.3 66 0.0014 25.5 3.2 46 85-136 150-195 (201)
172 COG4126 Hydantoin racemase [Am 29.2 72 0.0016 25.9 3.4 40 116-175 162-201 (230)
173 cd07187 YvcK_like family of mo 29.1 89 0.0019 26.6 4.1 49 115-180 164-216 (308)
174 COG1412 Uncharacterized protei 28.9 1.5E+02 0.0033 22.0 4.9 45 113-181 83-127 (136)
175 PF13500 AAA_26: AAA domain; P 28.5 63 0.0014 24.9 3.0 42 127-182 98-140 (199)
176 PF13362 Toprim_3: Toprim doma 28.2 1.7E+02 0.0036 19.6 4.8 36 6-41 39-76 (96)
177 PF02878 PGM_PMM_I: Phosphoglu 28.0 1.3E+02 0.0028 21.8 4.4 39 7-45 39-77 (137)
178 cd05564 PTS_IIB_chitobiose_lic 27.4 1.7E+02 0.0038 19.9 4.8 68 87-182 15-82 (96)
179 PHA02031 putative DnaG-like pr 27.3 92 0.002 26.0 3.8 37 8-44 206-242 (266)
180 CHL00076 chlB photochlorophyll 27.2 1.2E+02 0.0027 27.6 5.0 14 31-44 19-32 (513)
181 COG0552 FtsY Signal recognitio 27.0 4.2E+02 0.0091 23.0 8.8 48 86-138 181-231 (340)
182 PRK12738 kbaY tagatose-bisphos 26.8 2.3E+02 0.005 23.8 6.2 60 109-182 23-85 (286)
183 PF02571 CbiJ: Precorrin-6x re 26.7 1.3E+02 0.0029 24.6 4.7 52 121-190 187-239 (249)
184 TIGR01284 alt_nitrog_alph nitr 26.4 4.7E+02 0.01 23.4 9.9 22 117-138 384-405 (457)
185 PRK07313 phosphopantothenoylcy 26.1 1.2E+02 0.0027 23.5 4.2 35 8-43 1-35 (182)
186 TIGR01283 nifE nitrogenase mol 26.1 1.4E+02 0.003 26.6 5.1 12 33-44 55-66 (456)
187 cd01029 TOPRIM_primases TOPRIM 25.9 1.7E+02 0.0036 18.7 4.3 32 8-39 43-74 (79)
188 TIGR00737 nifR3_yhdG putative 25.8 3.8E+02 0.0082 22.5 7.5 21 117-137 149-169 (319)
189 PF04900 Fcf1: Fcf1; InterPro 25.8 1.7E+02 0.0038 20.0 4.6 43 114-179 51-93 (101)
190 TIGR03156 GTP_HflX GTP-binding 25.7 1.5E+02 0.0034 25.5 5.1 50 86-137 17-75 (351)
191 PRK08057 cobalt-precorrin-6x r 25.6 1.3E+02 0.0028 24.7 4.4 43 121-181 183-225 (248)
192 TIGR01918 various_sel_PB selen 25.4 1.5E+02 0.0032 26.6 4.9 49 116-179 324-372 (431)
193 TIGR00715 precor6x_red precorr 25.2 1.4E+02 0.0031 24.5 4.6 44 121-183 190-235 (256)
194 PRK02910 light-independent pro 25.2 5.3E+02 0.011 23.5 11.0 40 117-181 351-390 (519)
195 TIGR01520 FruBisAldo_II_A fruc 25.0 2.3E+02 0.0051 24.7 6.0 73 109-182 32-110 (357)
196 PRK11070 ssDNA exonuclease Rec 24.8 5.7E+02 0.012 23.8 9.9 26 112-138 136-161 (575)
197 cd01968 Nitrogenase_NifE_I Nit 24.6 1.7E+02 0.0037 25.6 5.3 26 113-138 102-127 (410)
198 PRK13606 LPPG:FO 2-phospho-L-l 24.1 2.1E+02 0.0046 24.4 5.5 45 115-177 174-221 (303)
199 PRK08883 ribulose-phosphate 3- 24.0 3.8E+02 0.0082 21.4 7.9 45 87-137 153-197 (220)
200 PRK12857 fructose-1,6-bisphosp 23.9 2.9E+02 0.0062 23.2 6.2 60 109-182 23-85 (284)
201 PRK08185 hypothetical protein; 23.9 2.9E+02 0.0064 23.2 6.3 59 109-181 18-78 (283)
202 TIGR02113 coaC_strep phosphopa 23.8 1.4E+02 0.003 23.1 4.1 34 9-43 1-34 (177)
203 PF02729 OTCace_N: Aspartate/o 23.7 1.3E+02 0.0029 22.3 3.9 44 113-179 81-124 (142)
204 KOG0237 Glycinamide ribonucleo 23.7 81 0.0018 29.6 3.0 21 117-137 57-77 (788)
205 cd01967 Nitrogenase_MoFe_alpha 23.7 1.6E+02 0.0036 25.5 5.0 26 113-138 103-128 (406)
206 COG0391 Uncharacterized conser 23.5 1.4E+02 0.003 25.7 4.3 50 116-182 179-232 (323)
207 TIGR01858 tag_bisphos_ald clas 23.3 3.1E+02 0.0066 23.0 6.3 60 109-182 21-83 (282)
208 PRK13054 lipid kinase; Reviewe 23.3 3.8E+02 0.0082 22.2 7.0 20 117-136 45-64 (300)
209 PLN02285 methionyl-tRNA formyl 23.2 4.8E+02 0.01 22.3 7.6 21 118-138 83-103 (334)
210 COG0151 PurD Phosphoribosylami 23.1 78 0.0017 28.2 2.8 21 117-137 52-72 (428)
211 PLN02828 formyltetrahydrofolat 23.1 4.4E+02 0.0096 21.9 8.9 37 7-44 69-105 (268)
212 PRK08384 thiamine biosynthesis 23.0 5.2E+02 0.011 22.7 10.8 35 7-45 179-213 (381)
213 cd01972 Nitrogenase_VnfE_like 23.0 1.4E+02 0.0031 26.3 4.5 14 31-44 18-31 (426)
214 PF04392 ABC_sub_bind: ABC tra 23.0 3.7E+02 0.008 22.1 6.8 53 85-137 14-68 (294)
215 TIGR02852 spore_dpaB dipicolin 22.9 1.3E+02 0.0029 23.5 3.9 35 9-44 1-36 (187)
216 PRK01033 imidazole glycerol ph 22.8 4.2E+02 0.0092 21.6 8.0 14 6-19 1-14 (258)
217 cd08194 Fe-ADH6 Iron-containin 22.8 4.4E+02 0.0094 22.7 7.4 22 117-138 69-91 (375)
218 COG1197 Mfd Transcription-repa 22.8 4.3E+02 0.0093 26.9 7.9 95 1-138 610-706 (1139)
219 cd00578 L-fuc_L-ara-isomerases 22.7 2.6E+02 0.0055 24.9 6.1 48 117-182 52-99 (452)
220 cd01979 Pchlide_reductase_N Pc 22.6 1.8E+02 0.0039 25.4 5.0 26 113-138 103-128 (396)
221 cd08175 G1PDH Glycerol-1-phosp 22.2 3.6E+02 0.0077 22.9 6.7 43 117-180 70-113 (348)
222 PTZ00170 D-ribulose-5-phosphat 21.9 2.4E+02 0.0053 22.6 5.3 27 110-137 177-203 (228)
223 PRK14478 nitrogenase molybdenu 21.7 1.7E+02 0.0037 26.3 4.8 12 33-44 53-64 (475)
224 PRK12737 gatY tagatose-bisphos 21.6 4E+02 0.0087 22.3 6.7 60 109-182 23-85 (284)
225 PRK11058 GTPase HflX; Provisio 21.6 2.2E+02 0.0048 25.3 5.4 51 86-137 25-83 (426)
226 TIGR01861 ANFD nitrogenase iro 21.6 6.3E+02 0.014 23.1 9.6 18 121-138 391-408 (513)
227 COG0069 GltB Glutamate synthas 21.5 6.3E+02 0.014 23.1 8.5 47 87-136 289-335 (485)
228 smart00493 TOPRIM topoisomeras 21.3 1.4E+02 0.0031 18.7 3.2 25 9-33 48-72 (76)
229 KOG2310 DNA repair exonuclease 21.3 88 0.0019 29.0 2.8 61 115-186 39-104 (646)
230 PRK00843 egsA NAD(P)-dependent 21.3 1.3E+02 0.0029 25.7 3.9 20 161-180 101-120 (350)
231 PRK08305 spoVFB dipicolinate s 21.1 1.9E+02 0.0042 22.8 4.4 37 7-44 4-41 (196)
232 cd00946 FBP_aldolase_IIA Class 20.9 3.3E+02 0.0072 23.6 6.1 72 109-181 21-97 (345)
233 PF13528 Glyco_trans_1_3: Glyc 20.9 1.9E+02 0.0042 23.7 4.7 34 9-45 1-36 (318)
234 PRK09722 allulose-6-phosphate 20.6 4.6E+02 0.01 21.2 11.0 27 110-137 173-199 (229)
235 TIGR00364 exsB protein. This p 20.5 4.1E+02 0.0088 20.5 9.4 30 12-45 2-31 (201)
236 cd01981 Pchlide_reductase_B Pc 20.5 1.9E+02 0.0041 25.5 4.7 15 30-44 18-32 (430)
237 PRK05395 3-dehydroquinate dehy 20.4 3.9E+02 0.0084 20.2 6.4 68 89-178 29-100 (146)
238 smart00732 YqgFc Likely ribonu 20.4 2.6E+02 0.0057 18.4 4.6 54 116-179 39-92 (99)
239 PF01220 DHquinase_II: Dehydro 20.3 2.1E+02 0.0045 21.5 4.2 71 87-178 26-99 (140)
240 PRK00861 putative lipid kinase 20.1 5E+02 0.011 21.4 7.4 31 106-136 35-65 (300)
241 COG0816 Predicted endonuclease 20.1 1.2E+02 0.0026 22.7 2.9 51 116-180 41-97 (141)
242 COG0054 RibH Riboflavin syntha 20.1 4E+02 0.0087 20.3 7.0 77 85-176 28-113 (152)
243 cd01974 Nitrogenase_MoFe_beta 20.0 2E+02 0.0044 25.5 4.8 11 128-138 120-130 (435)
No 1
>PRK15005 universal stress protein F; Provisional
Probab=99.92 E-value=6.6e-24 Score=159.35 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=99.0
Q ss_pred CCCeEEEEECCCcc--hHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccch
Q 045490 7 QSRKVMVIADPTRE--SAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGG 84 (200)
Q Consensus 7 ~~~~IlVavD~s~~--s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (200)
|+++||||+|+|+. +.+|++||..+|+..+++|+++||+++.... .. . ... . ........+..
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~----~~--~---~~~----~--~~~~~~~~~~~ 65 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYY----AS--L---GLA----Y--SAELPAMDDLK 65 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccc----cc--c---ccc----c--cccchHHHHHH
Confidence 58999999999998 5799999999999999999999998643200 00 0 000 0 00000001111
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccccCCCccCCCCcChH
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTA 163 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~ 163 (200)
++..+.+.+.+++... .+++++.++..|+ |.+.|+++++++++||||||+++ .+.+.++| |++
T Consensus 66 ~~~~~~l~~~~~~~~~-~~~~~~~~v~~G~-p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llG--------------S~a 129 (144)
T PRK15005 66 AEAKSQLEEIIKKFKL-PTDRVHVHVEEGS-PKDRILELAKKIPADMIIIASHRPDITTYLLG--------------SNA 129 (144)
T ss_pred HHHHHHHHHHHHHhCC-CCCceEEEEeCCC-HHHHHHHHHHHcCCCEEEEeCCCCCchheeec--------------chH
Confidence 2222333333333322 2456777888898 99999999999999999999876 56666666 999
Q ss_pred HHHHcCCCccEEEEe
Q 045490 164 EYLIQNSKCNCVGVQ 178 (200)
Q Consensus 164 ~~vl~~s~~pVLvv~ 178 (200)
++|+++++||||+||
T Consensus 130 ~~vl~~a~cpVlvVr 144 (144)
T PRK15005 130 AAVVRHAECSVLVVR 144 (144)
T ss_pred HHHHHhCCCCEEEeC
Confidence 999999999999996
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.91 E-value=1.6e-23 Score=157.38 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=97.3
Q ss_pred CCCeEEEEECCCc--chHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccch
Q 045490 7 QSRKVMVIADPTR--ESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGG 84 (200)
Q Consensus 7 ~~~~IlVavD~s~--~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (200)
||+|||||+|+|+ .+.+|+++|..+++.. ++|+++||+++... ...... ............+..
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~ 66 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSAS----------LSLHRF---AADVRRFEEHLQHEA 66 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCccc----------cccccc---ccchhhHHHHHHHHH
Confidence 5899999999995 7999999999999874 69999999864320 000000 000000001111222
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccccCCCccCCCCcChH
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTA 163 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~ 163 (200)
++.++++.+. ... .+++++.++..|+ +.+.|+++++++++||||||+|+ ++.+.++| |++
T Consensus 67 ~~~l~~~~~~---~~~-~~~~v~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~~~~~llG--------------S~a 127 (142)
T PRK15456 67 EERLQTMVSH---FTI-DPSRIKQHVRFGS-VRDEVNELAEELGADVVVIGSRNPSISTHLLG--------------SNA 127 (142)
T ss_pred HHHHHHHHHH---hCC-CCcceEEEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCCCccceecC--------------ccH
Confidence 3334433332 221 2466777888998 99999999999999999999998 55556666 999
Q ss_pred HHHHcCCCccEEEEe
Q 045490 164 EYLIQNSKCNCVGVQ 178 (200)
Q Consensus 164 ~~vl~~s~~pVLvv~ 178 (200)
++|+++++||||+||
T Consensus 128 ~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 128 SSVIRHANLPVLVVR 142 (142)
T ss_pred HHHHHcCCCCEEEeC
Confidence 999999999999996
No 3
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.90 E-value=5.6e-23 Score=154.72 Aligned_cols=141 Identities=24% Similarity=0.366 Sum_probs=102.1
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHH
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLE 89 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (200)
+||||+|+|+.+.+|++||+.++...+++|+++||.++.... +..... . ...........+..++.++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~---------~~~~~~--~-~~~~~~~~~~~~~~~~~l~ 68 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSI---------PSSSGK--L-EVASAYKQEEDKEAKELLL 68 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccC---------CCCccc--h-HHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999997643210 000000 0 0000001111223445666
Q ss_pred HHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcChHHHHH
Q 045490 90 EMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVDTAEYLI 167 (200)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s~~~~vl 167 (200)
++.+.+... +++++.++..|+++.+.|++++++.++|+||||+++ .+.++++|+ |++.+|+
T Consensus 69 ~~~~~~~~~----~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gs-------------sva~~Vi 131 (146)
T cd01989 69 PYRCFCSRK----GVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKS-------------DVASSVL 131 (146)
T ss_pred HHHHHHhhc----CCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCC-------------chhHHHH
Confidence 666665433 477777888875599999999999999999999987 555666652 6999999
Q ss_pred cCCC--ccEEEEec
Q 045490 168 QNSK--CNCVGVQR 179 (200)
Q Consensus 168 ~~s~--~pVLvv~~ 179 (200)
++++ ||||+|++
T Consensus 132 ~~a~~~c~Vlvv~~ 145 (146)
T cd01989 132 KEAPDFCTVYVVSK 145 (146)
T ss_pred hcCCCCceEEEEeC
Confidence 9999 99999985
No 4
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.90 E-value=4e-23 Score=155.39 Aligned_cols=140 Identities=15% Similarity=0.178 Sum_probs=94.4
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
|+|++||||+|+|+.+..|+++|..+|+..+++|+++||.++.. ..+ +. ... ........+..+
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~-----~~~---~~------~~~--~~~~~~~~~~~~ 64 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYS-----DLY---TG------LID--VNLGDMQKRISE 64 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChh-----hhh---hh------hhh--cchHHHHHHHHH
Confidence 68999999999999999999999999999999999999942210 000 00 000 000000001111
Q ss_pred HHHHHHHHHHHHhCCCcceEE-EEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHH
Q 045490 86 DFLEEMKQACEVAKPKLRVHV-EKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAE 164 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v-~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~ 164 (200)
+..+.+.+.+.+. ++++ ..++..|+ |.+.|+++++++++||||||+|+...+. +| |+++
T Consensus 65 ~~~~~l~~~~~~~----~~~~~~~~~~~G~-p~~~I~~~a~~~~~DLIV~Gs~~~~~~~-lg--------------Sva~ 124 (144)
T PRK15118 65 ETHHALTELSTNA----GYPITETLSGSGD-LGQVLVDAIKKYDMDLVVCGHHQDFWSK-LM--------------SSAR 124 (144)
T ss_pred HHHHHHHHHHHhC----CCCceEEEEEecC-HHHHHHHHHHHhCCCEEEEeCcccHHHH-HH--------------HHHH
Confidence 2222233332222 3443 33455788 9999999999999999999999732222 34 8999
Q ss_pred HHHcCCCccEEEEecCC
Q 045490 165 YLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 165 ~vl~~s~~pVLvv~~~~ 181 (200)
+|+++++||||+||.+.
T Consensus 125 ~v~~~a~~pVLvv~~~~ 141 (144)
T PRK15118 125 QLINTVHVDMLIVPLRD 141 (144)
T ss_pred HHHhhCCCCEEEecCCc
Confidence 99999999999998654
No 5
>PRK09982 universal stress protein UspD; Provisional
Probab=99.89 E-value=8.5e-23 Score=153.88 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=95.6
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
|||+|||||+|+|+.|.+|+++|..+|+..+++|+++||.++.... .+. .+ ............+..+
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~--------~~~--~~---~~~~~~~~~~~~~~~~ 67 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSEL--------YPG--IY---FPATEDILQLLKNKSD 67 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchh--------chh--hh---ccchHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999997543200 000 00 0000000011111122
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccccCCCccCCCCcChHH
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTAE 164 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~~ 164 (200)
+.++++.+.+ . . ..++.++..|+ |.+.|+++|++.++||||||++. .+.+++ | +++
T Consensus 68 ~~l~~~~~~~---~-~--~~~~~~v~~G~-p~~~I~~~A~~~~aDLIVmG~~~~~~~~~~-~---------------va~ 124 (142)
T PRK09982 68 NKLYKLTKNI---Q-W--PKTKLRIERGE-MPETLLEIMQKEQCDLLVCGHHHSFINRLM-P---------------AYR 124 (142)
T ss_pred HHHHHHHHhc---C-C--CcceEEEEecC-HHHHHHHHHHHcCCCEEEEeCChhHHHHHH-H---------------HHH
Confidence 2333333221 1 1 23556778888 99999999999999999999864 333333 3 999
Q ss_pred HHHcCCCccEEEEecCC
Q 045490 165 YLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 165 ~vl~~s~~pVLvv~~~~ 181 (200)
+|+++++||||+||..+
T Consensus 125 ~V~~~s~~pVLvv~~~~ 141 (142)
T PRK09982 125 GMINKMSADLLIVPFID 141 (142)
T ss_pred HHHhcCCCCEEEecCCC
Confidence 99999999999998654
No 6
>PRK10116 universal stress protein UspC; Provisional
Probab=99.86 E-value=6e-21 Score=142.99 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=94.1
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
|+|++|||++|+++.+..++++|+.+|+..+++|+++|+++... .+.... ........+...
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~---------------~~~~~~---~~~~~~~~~~~~ 62 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPE---------------MYNQFA---APMLEDLRSVMQ 62 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcc---------------cchhhh---HHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999964321 000000 000001111111
Q ss_pred -HHHHHHHHHHHHhCCCcceEE-EEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcC
Q 045490 86 -DFLEEMKQACEVAKPKLRVHV-EKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 86 -~~l~~~~~~~~~~~~~~~v~v-~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
+..+.+++... ..+++. ..++..|+ +.+.|++++++.++||||||+++ .+.++ + |
T Consensus 63 ~~~~~~l~~~~~----~~~~~~~~~~~~~G~-~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~--~--------------s 121 (142)
T PRK10116 63 EETQSFLDKLIQ----DADYPIEKTFIAYGE-LSEHILEVCRKHHFDLVICGNHNHSFFSRA--S--------------C 121 (142)
T ss_pred HHHHHHHHHHHH----hcCCCeEEEEEecCC-HHHHHHHHHHHhCCCEEEEcCCcchHHHHH--H--------------H
Confidence 11112222222 224433 34566787 99999999999999999999987 23322 2 6
Q ss_pred hHHHHHcCCCccEEEEecCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~ 181 (200)
++++++++++||||+|+.++
T Consensus 122 ~a~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 122 SAKRVIASSEVDVLLVPLTG 141 (142)
T ss_pred HHHHHHhcCCCCEEEEeCCC
Confidence 89999999999999998765
No 7
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.85 E-value=5e-20 Score=135.58 Aligned_cols=130 Identities=18% Similarity=0.274 Sum_probs=99.4
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHH
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLE 89 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (200)
+||||+|+++.+..++++|..++...+++|+++|++++.. .... .......+..++.++
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~----------~~~~-----------~~~~~~~~~~~~~~~ 59 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPN----------HSSP-----------SQLEVNVQRARKLLR 59 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCC----------CCCc-----------chhHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999986432 0000 001111233456666
Q ss_pred HHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcChHHHHH
Q 045490 90 EMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVDTAEYLI 167 (200)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s~~~~vl 167 (200)
.+.+.+.+. +++++..+..+.++.+.|++.++++++|+||||+++ .+.+.++| |++++++
T Consensus 60 ~~~~~~~~~----g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lG--------------s~~~~v~ 121 (132)
T cd01988 60 QAERIAASL----GVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFG--------------GVIDQVL 121 (132)
T ss_pred HHHHHhhhc----CCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecC--------------chHHHHH
Confidence 776665544 466666666544499999999999999999999987 44566666 8999999
Q ss_pred cCCCccEEEEe
Q 045490 168 QNSKCNCVGVQ 178 (200)
Q Consensus 168 ~~s~~pVLvv~ 178 (200)
++++||||++|
T Consensus 122 ~~~~~pvlvv~ 132 (132)
T cd01988 122 ESAPCDVAVVK 132 (132)
T ss_pred hcCCCCEEEeC
Confidence 99999999986
No 8
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.84 E-value=7.7e-21 Score=139.38 Aligned_cols=131 Identities=29% Similarity=0.437 Sum_probs=92.8
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHH
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGED 86 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
|+++||||+|+++.+..+++||+.++...+++|+++||.+... .+ ............
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~---------------~~--------~~~~~~~~~~~~ 57 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPP---------------QY--------SFSAAEDEESEE 57 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCH---------------CH--------HHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccc---------------cc--------cccccccccccc
Confidence 6899999999999999999999999999999999999975432 00 000000000000
Q ss_pred HHHHHH-------HHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCC
Q 045490 87 FLEEMK-------QACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGS 157 (200)
Q Consensus 87 ~l~~~~-------~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~ 157 (200)
..+... ....... .......+..|+ +.+.|++++++.++|+||||+++ .+.+.++|
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~g----------- 122 (140)
T PF00582_consen 58 EAEEEEQARQAEAEEAEAEG---GIVIEVVIESGD-VADAIIEFAEEHNADLIVMGSRGRSGLERLLFG----------- 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---TSEEEEEEEESS-HHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSH-----------
T ss_pred ccchhhhhhhHHHHHHhhhc---cceeEEEEEeec-cchhhhhccccccceeEEEeccCCCCccCCCcC-----------
Confidence 000000 1111111 244445666777 99999999999999999999976 55556666
Q ss_pred CCcChHHHHHcCCCccEEEEe
Q 045490 158 KGVDTAEYLIQNSKCNCVGVQ 178 (200)
Q Consensus 158 ~~~s~~~~vl~~s~~pVLvv~ 178 (200)
|++++|+++++|||||||
T Consensus 123 ---s~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 123 ---SVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp ---HHHHHHHHHTSSEEEEEE
T ss_pred ---CHHHHHHHcCCCCEEEeC
Confidence 899999999999999996
No 9
>PRK11175 universal stress protein UspE; Provisional
Probab=99.83 E-value=4.9e-20 Score=154.55 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=105.7
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccccc----c
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAA----A 81 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 81 (200)
||+++|||++|+|+.+..|+++|+.+|+..+++|+++|+++...+. .+. .. . ....... .
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~--------~~~--~~---~---~~~~~~~~~~~~ 64 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYE--------MTT--LL---S---PDEREAMRQGVI 64 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhh--------hhc--cc---c---hhHHHHHHHHHH
Confidence 6899999999999999999999999999999999999997432100 000 00 0 0000000 1
Q ss_pred cchHHHHHHHHHHHHHhCCCcceEEEEEEec-CCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCC
Q 045490 82 PGGEDFLEEMKQACEVAKPKLRVHVEKVHTE-SGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSK 158 (200)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~-g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~ 158 (200)
++.++.++++.+.+.. .+++++..+.. |+ +.+.|++++++.++||||||+++ .+.+.++|
T Consensus 65 ~~~~~~l~~~~~~~~~----~~~~~~~~v~~~g~-~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~g------------ 127 (305)
T PRK11175 65 SQRTAWIREQAKPYLD----AGIPIEIKVVWHNR-PFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFT------------ 127 (305)
T ss_pred HHHHHHHHHHHHHHhh----cCCceEEEEecCCC-cHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccC------------
Confidence 1122334444443322 25667766664 65 99999999999999999999987 45666666
Q ss_pred CcChHHHHHcCCCccEEEEecCCC--Ccceeeee
Q 045490 159 GVDTAEYLIQNSKCNCVGVQRKGQ--NAGYLLNT 190 (200)
Q Consensus 159 ~~s~~~~vl~~s~~pVLvv~~~~~--~~~~~~~~ 190 (200)
|++++++++++||||+|+.... ...+++++
T Consensus 128 --s~~~~l~~~~~~pvlvv~~~~~~~~~~Ilva~ 159 (305)
T PRK11175 128 --PTDWHLLRKCPCPVLMVKDQDWPEGGKILVAV 159 (305)
T ss_pred --hhHHHHHhcCCCCEEEecccccCCCCeEEEEe
Confidence 8999999999999999997544 34555554
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.82 E-value=1.8e-19 Score=131.95 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=95.7
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHH
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLE 89 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (200)
+||||+|+++.+.++++||+.++...+++|+++||.++.. . ...++.++.++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~---------------~-------------~~~~~~~~~l~ 52 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRL---------------N-------------RLSEAERRRLA 52 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcc---------------c-------------cCCHHHHHHHH
Confidence 6999999999999999999999999999999999964321 0 01123356677
Q ss_pred HHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcChHHHHH
Q 045490 90 EMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVDTAEYLI 167 (200)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s~~~~vl 167 (200)
.+.+.+++. ++++ ....+.++.+.|.++++++++|+||||+++ .+.+.++| |++++++
T Consensus 53 ~~~~~~~~~----~~~~--~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~G--------------s~~~~v~ 112 (124)
T cd01987 53 EALRLAEEL----GAEV--VTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRG--------------SLVDRLL 112 (124)
T ss_pred HHHHHHHHc----CCEE--EEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcc--------------cHHHHHH
Confidence 777766654 3443 344454599999999999999999999986 67777777 8999999
Q ss_pred cCC-CccEEEE
Q 045490 168 QNS-KCNCVGV 177 (200)
Q Consensus 168 ~~s-~~pVLvv 177 (200)
+++ +|||+|+
T Consensus 113 ~~a~~~~v~v~ 123 (124)
T cd01987 113 RRAGNIDVHIV 123 (124)
T ss_pred HhCCCCeEEEe
Confidence 999 9999997
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.77 E-value=4.6e-18 Score=142.59 Aligned_cols=143 Identities=19% Similarity=0.234 Sum_probs=97.1
Q ss_pred CCCCeEEEEECCCcch-------HHHHHHHHHhcCCC-CCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccc
Q 045490 6 PQSRKVMVIADPTRES-------AGALQYALSHVLLE-EDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSE 77 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s-------~~al~~A~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (200)
..+++||+|+|+++.+ ..++++|..+++.. +++|+++||++..... .....+. ....
T Consensus 150 ~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~----~~~~~~~-----------~~~~ 214 (305)
T PRK11175 150 PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPIN----IAIELPE-----------FDPS 214 (305)
T ss_pred CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchh----ccccccc-----------cchh
Confidence 4579999999999763 57999999999998 9999999997533100 0000000 0000
Q ss_pred cccccchHHHHHHHHHHHHHhCCCcceEE-EEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCc
Q 045490 78 GAAAPGGEDFLEEMKQACEVAKPKLRVHV-EKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSL 154 (200)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~v~v-~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~ 154 (200)
.......++..+.+++.++.. +++. ..++..|+ +.+.|++++++.++||||||+++ .+.++++|
T Consensus 215 ~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llG-------- 281 (305)
T PRK11175 215 VYNDAIRGQHLLAMKALRQKF----GIDEEQTHVEEGL-PEEVIPDLAEHLDAELVILGTVGRTGLSAAFLG-------- 281 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHh----CCChhheeeccCC-HHHHHHHHHHHhCCCEEEECCCccCCCcceeec--------
Confidence 000011112223333333333 2332 34567787 99999999999999999999976 66777777
Q ss_pred cCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 155 RGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 155 ~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
|++++|+++++||||+||++++
T Consensus 282 ------S~a~~v~~~~~~pVLvv~~~~~ 303 (305)
T PRK11175 282 ------NTAEHVIDHLNCDLLAIKPDGY 303 (305)
T ss_pred ------chHHHHHhcCCCCEEEEcCCCC
Confidence 9999999999999999986654
No 12
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.71 E-value=4.9e-16 Score=116.43 Aligned_cols=147 Identities=27% Similarity=0.322 Sum_probs=105.3
Q ss_pred CCCCCeEEEEEC-CCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccc
Q 045490 5 TPQSRKVMVIAD-PTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPG 83 (200)
Q Consensus 5 ~~~~~~IlVavD-~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (200)
..++++|++++| +++.+..+++++..++...+..+++++|.+................ .........+.
T Consensus 2 ~~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 71 (154)
T COG0589 2 PAMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAP----------IPLSEEELEEE 71 (154)
T ss_pred ccccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccch----------hhhhHHHHHHH
Confidence 357899999999 9999999999999999999999999999755431100000000000 00000111223
Q ss_pred hHHHHHHHHHHHHHhCCCcceE-EEEEEecCCcH-HHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCC
Q 045490 84 GEDFLEEMKQACEVAKPKLRVH-VEKVHTESGNK-AAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKG 159 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~-v~~~~~~g~~~-~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~ 159 (200)
.++.++.+.+...+.+ ++ ++..+..|. + .+.|++++.+.++|+||||+++ .+.+.++|
T Consensus 72 ~~~~~~~~~~~~~~~~----~~~~~~~~~~g~-~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llG------------- 133 (154)
T COG0589 72 AEELLAEAKALAEAAG----VPVVETEVVEGS-PSAEEILELAEEEDADLIVVGSRGRSGLSRLLLG------------- 133 (154)
T ss_pred HHHHHHHHHHHHHHcC----CCeeEEEEecCC-CcHHHHHHHHHHhCCCEEEECCCCCccccceeee-------------
Confidence 3566666666655543 44 466788898 7 7999999999999999999976 55556666
Q ss_pred cChHHHHHcCCCccEEEEecC
Q 045490 160 VDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 160 ~s~~~~vl~~s~~pVLvv~~~ 180 (200)
|++++++++++||||+++.+
T Consensus 134 -svs~~v~~~~~~pVlvv~~~ 153 (154)
T COG0589 134 -SVAEKVLRHAPCPVLVVRSE 153 (154)
T ss_pred -hhHHHHHhcCCCCEEEEccC
Confidence 99999999999999999865
No 13
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.70 E-value=2.5e-16 Score=114.13 Aligned_cols=128 Identities=30% Similarity=0.435 Sum_probs=96.9
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHH
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLE 89 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (200)
+|||++|+++.+..++++|..++...+++|+++|+.+.... .. .........+.++.++
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~----------~~-----------~~~~~~~~~~~~~~l~ 59 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPS----------SA-----------AELAELLEEEARALLE 59 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCC----------cc-----------hhHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999643320 00 0000111223345666
Q ss_pred HHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcChHHHHH
Q 045490 90 EMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVDTAEYLI 167 (200)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s~~~~vl 167 (200)
++...+... ++++...+..|. +.+.|.+++++.++|+||||+++ .+.+.++| +++++++
T Consensus 60 ~~~~~~~~~----~~~~~~~~~~~~-~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~--------------~~~~~ll 120 (130)
T cd00293 60 ALREALAEA----GVKVETVVLEGD-PAEAILEAAEELGADLIVMGSRGRSGLRRLLLG--------------SVAERVL 120 (130)
T ss_pred HHHHHHhcC----CCceEEEEecCC-CHHHHHHHHHHcCCCEEEEcCCCCCccceeeec--------------cHHHHHH
Confidence 665554222 466776778888 79999999999999999999976 55566676 8999999
Q ss_pred cCCCccEEEE
Q 045490 168 QNSKCNCVGV 177 (200)
Q Consensus 168 ~~s~~pVLvv 177 (200)
++++||||++
T Consensus 121 ~~~~~pvliv 130 (130)
T cd00293 121 RHAPCPVLVV 130 (130)
T ss_pred hCCCCCEEeC
Confidence 9999999985
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.54 E-value=6e-14 Score=120.30 Aligned_cols=109 Identities=12% Similarity=0.182 Sum_probs=80.3
Q ss_pred CCCCCeEEEEECCCcchHHHHHHHHHhcCCC--CCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccccccc
Q 045490 5 TPQSRKVMVIADPTRESAGALQYALSHVLLE--EDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAP 82 (200)
Q Consensus 5 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (200)
.++++|||||+|+|+.|.+|+++|+++|+.. +++|+++||.+... .. .......+
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~---------------~~--------~~~~~~~~ 58 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRA---------------VD--------PEGQDELA 58 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcc---------------cc--------cchhHHHH
Confidence 4789999999999999999999999999985 59999999975321 00 00011113
Q ss_pred chHHHHHHHHHHHHHhC--CCcceEEEEEEec--------CCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 83 GGEDFLEEMKQACEVAK--PKLRVHVEKVHTE--------SGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 83 ~~~~~l~~~~~~~~~~~--~~~~v~v~~~~~~--------g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
..++.++++++.+++.. ...+++++..+.. |+ |+++|+++|+++++||||||..
T Consensus 59 ~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~-pae~Iv~~Aee~~aDLIVm~~~ 122 (357)
T PRK12652 59 AAEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGD-YAEVLIAYAEEHGIDRVVLDPE 122 (357)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCC-HHHHHHHHHHHcCCCEEEECCC
Confidence 34456666666665421 1135777777765 66 9999999999999999999974
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.17 E-value=8.6e-10 Score=105.23 Aligned_cols=128 Identities=12% Similarity=0.029 Sum_probs=95.0
Q ss_pred CCCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccch
Q 045490 5 TPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGG 84 (200)
Q Consensus 5 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (200)
|....+||||+++++.+.++++++..+|.+.++.++++||.++.. .......
T Consensus 247 ~~~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~----------------------------~~~~~~~ 298 (895)
T PRK10490 247 WHTRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRL----------------------------HRLPEKK 298 (895)
T ss_pred CCcCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCc----------------------------CcCCHHH
Confidence 456789999999999999999999999999999999999953211 0001112
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccccCCCccCCCCcChH
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTA 163 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~ 163 (200)
++.+.+..+++++.+ -++ ..+.|+|+++.|+++|++++++.||||..+ ... ++.| |++
T Consensus 299 ~~~l~~~~~lA~~lG----a~~--~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~-~~~~--------------s~~ 357 (895)
T PRK10490 299 RRAILSALRLAQELG----AET--ATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW-WRRE--------------SFA 357 (895)
T ss_pred HHHHHHHHHHHHHcC----CEE--EEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC-ccCC--------------CHH
Confidence 233444445666554 333 566787899999999999999999999865 221 2234 899
Q ss_pred HHHHcCC-CccEEEEecCC
Q 045490 164 EYLIQNS-KCNCVGVQRKG 181 (200)
Q Consensus 164 ~~vl~~s-~~pVLvv~~~~ 181 (200)
+++++.+ .+.|.||....
T Consensus 358 ~~l~r~~~~idi~iv~~~~ 376 (895)
T PRK10490 358 DRLARLGPDLDLVIVALDE 376 (895)
T ss_pred HHHHHhCCCCCEEEEeCCc
Confidence 9999997 59999996443
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.03 E-value=5.2e-09 Score=96.37 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=104.1
Q ss_pred CCCCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccc
Q 045490 4 GTPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPG 83 (200)
Q Consensus 4 ~~~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (200)
.|....+|+||++.++.+.+.+++|..+|.+.++.++.+||..+.. ....+.
T Consensus 244 ~~~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~----------------------------~~~~~~ 295 (890)
T COG2205 244 VWAARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPEL----------------------------HRLSEK 295 (890)
T ss_pred cccccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccc----------------------------ccccHH
Confidence 3455689999999999999999999999999999999999964332 111134
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcC
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
..+.+.+...++++.+. +++.+.|.|+++.|+++|+.+++.-||||... .|.+.+.| |
T Consensus 296 ~~~~l~~~~~Lae~lGa------e~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~--------------~ 355 (890)
T COG2205 296 EARRLHENLRLAEELGA------EIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKG--------------S 355 (890)
T ss_pred HHHHHHHHHHHHHHhCC------eEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcc--------------c
Confidence 45677888888777662 33567777799999999999999999999854 56666666 8
Q ss_pred hHHHHHcCC-CccEEEEecCCC
Q 045490 162 TAEYLIQNS-KCNCVGVQRKGQ 182 (200)
Q Consensus 162 ~~~~vl~~s-~~pVLvv~~~~~ 182 (200)
..+++++.. ++.|.+|.....
T Consensus 356 l~~~L~~~~~~idv~ii~~~~~ 377 (890)
T COG2205 356 LADRLAREAPGIDVHIVALDAP 377 (890)
T ss_pred HHHHHHhcCCCceEEEeeCCCC
Confidence 999999986 688988876554
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.04 E-value=2.8e-05 Score=53.04 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=66.5
Q ss_pred EEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHH
Q 045490 11 VMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEE 90 (200)
Q Consensus 11 IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (200)
|+|+++++..|..++.++..++ ..+.+++.+|+ .
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~------------------------------~--------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV------------------------------V--------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe------------------------------H---------------
Confidence 6899999999999999999987 56778999999 1
Q ss_pred HHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC-CC-CcccccccccCCCccCCCCcChHHHHHc
Q 045490 91 MKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR-SL-SNAILGYRRAGGSLRGSKGVDTAEYLIQ 168 (200)
Q Consensus 91 ~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~-~~-~~~~~G~~~~~~~~~~~~~~s~~~~vl~ 168 (200)
. ..+.+.+.++++++|+|++|.+. .. ...+.|. +++.++++
T Consensus 35 -----------------------~-~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~-------------~~~~~~~~ 77 (86)
T cd01984 35 -----------------------A-FVRILKRLAAEEGADVIILGHNADDVAGRRLGAS-------------ANVLVVIK 77 (86)
T ss_pred -----------------------H-HHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch-------------hhhhhccc
Confidence 3 67788888999999999999986 22 2222221 68889999
Q ss_pred CCCccEEE
Q 045490 169 NSKCNCVG 176 (200)
Q Consensus 169 ~s~~pVLv 176 (200)
.++|||+.
T Consensus 78 ~~~~~vl~ 85 (86)
T cd01984 78 GAGIPVLT 85 (86)
T ss_pred ccCCceeC
Confidence 99999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.56 E-value=0.0055 Score=58.63 Aligned_cols=159 Identities=9% Similarity=0.103 Sum_probs=89.6
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcC--CCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccc
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVL--LEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPG 83 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~--~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (200)
....|||+|+...++-...+..+..... +..-.++++|.++-....++....-..... ...........
T Consensus 456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~---------~~~~~~~~~~~ 526 (832)
T PLN03159 456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKS---------GRPALNRTQAQ 526 (832)
T ss_pred CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccc---------ccccccccccc
Confidence 3456999999988777666655433222 223589999998765432222211100000 00000001111
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEE--EecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcC
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKV--HTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~--~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
.++.++.++..-++. . ++.++.. +-.-.+..+.|+..|++..+++||++-|+.++ +.|... + .+-.+..
T Consensus 527 ~~~i~~af~~~~~~~-~--~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~--~dg~~~--~--~~~~~r~ 597 (832)
T PLN03159 527 SDHIINAFENYEQHA-G--CVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQT--VDGGME--A--TNPAFRG 597 (832)
T ss_pred ccHHHHHHHHHHhhc-C--ceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccC--CCCCcc--c--cCchHHH
Confidence 335555555543322 1 3666543 33444699999999999999999999876211 011000 0 0012236
Q ss_pred hHHHHHcCCCccEEEEecCCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~~ 182 (200)
+-.+|+++++|+|-|.=+++.
T Consensus 598 ~n~~VL~~ApCsVgIlVDRg~ 618 (832)
T PLN03159 598 VNQNVLANAPCSVGILVDRGL 618 (832)
T ss_pred HHHHHHccCCCCEEEEEeCCC
Confidence 789999999999988866654
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.06 E-value=0.011 Score=56.52 Aligned_cols=161 Identities=13% Similarity=0.099 Sum_probs=82.7
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHH
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDF 87 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (200)
..+|.+..=+.++.+.||.+|..++..++-+++++|..+.+............|..+... ........+.+.+++.
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~~~D~~~ 705 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIP----TVETDGKKERQLDEEY 705 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccc----cccccchhHHHHHHHH
Confidence 458999998889999999999999999999999999975433111000000000000000 0000111122234566
Q ss_pred HHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHH--cCCCEEEEecCC-CCCcccccccccCCCccCC-CCcChH
Q 045490 88 LEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTA--HGVDLLIIGQRR-SLSNAILGYRRAGGSLRGS-KGVDTA 163 (200)
Q Consensus 88 l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~--~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~-~~~s~~ 163 (200)
++++++.... +..+.+.-+++. + ..|. ++.+++ .++||+|+|++. ..+....|. ++|... =+|-+-
T Consensus 706 ~~ef~~~~~~---~~~v~y~E~~V~-~-~~e~-~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL----~~w~e~pELG~iG 775 (832)
T PLN03159 706 INEFRARNAG---NESIVYTEKVVS-N-GEET-VAAIRSMDSAHDLFIVGRGQGMISPLTAGL----TDWSECPELGAIG 775 (832)
T ss_pred HHHHHHhcCC---CCceEEEEEecC-C-HHHH-HHHHHHhhccCcEEEEecCCCCCcchhccc----cccccCCccchhh
Confidence 6666665322 124666544443 2 2332 223333 248999999853 112222221 112111 122333
Q ss_pred HHHHc---CCCccEEEEecCCC
Q 045490 164 EYLIQ---NSKCNCVGVQRKGQ 182 (200)
Q Consensus 164 ~~vl~---~s~~pVLvv~~~~~ 182 (200)
+.+.- .+..+||||+++..
T Consensus 776 D~LaS~d~~~~~SVLVvQQ~~~ 797 (832)
T PLN03159 776 DLLASSDFAATVSVLVVQQYVG 797 (832)
T ss_pred hHHhcCCCCCceeEEEEEeecc
Confidence 33333 24679999987765
No 20
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.87 E-value=0.018 Score=44.89 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=63.6
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHH
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLE 89 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (200)
+|+|++.++.+|..++..+...+...+.++.++|+.... .....+..+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~--------------------------------~~~~~~~~~ 48 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGL--------------------------------RPESDEEAE 48 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC--------------------------------ChhHHHHHH
Confidence 589999999999999988888776667789999993210 001123456
Q ss_pred HHHHHHHHhCCCcceEEEEEEec--------CCcHH--------HHHHHHHHHcCCCEEEEecCC
Q 045490 90 EMKQACEVAKPKLRVHVEKVHTE--------SGNKA--------AIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~~~~~~--------g~~~~--------~~I~~~a~~~~~dllVmG~~~ 138 (200)
.++..|+..+ ++..+.... +.+.. ..+.+.+++++++.|+.|.+.
T Consensus 49 ~~~~~~~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~ 109 (189)
T TIGR02432 49 FVQQFCKKLN----IPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHA 109 (189)
T ss_pred HHHHHHHHcC----CCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 6666766654 443332221 11123 578889999999999999975
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.34 E-value=0.1 Score=40.50 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=57.7
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHH
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLE 89 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (200)
||+|++.+..+|...+.....+....+-++.++||...- . ....+..+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~----------------------------~----~~s~~~~~ 48 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGL----------------------------R----EESDEEAE 48 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-ST----------------------------S----CCHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCC----------------------------C----cccchhHH
Confidence 699999999999998888888888888899999994211 0 12223445
Q ss_pred HHHHHHHHhCCCcceEEEEEEec-----CCcH--------HHHHHHHHHHcCCCEEEEecCC
Q 045490 90 EMKQACEVAKPKLRVHVEKVHTE-----SGNK--------AAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~~~~~~-----g~~~--------~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.+++.|+..+ ++..+.... +.+. -+.+.+.|.+++++.|++|.+.
T Consensus 49 ~v~~~~~~~~----i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 49 FVEEICEQLG----IPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHHHHHHTT-----EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred HHHHHHHhcC----CceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 5666676654 555444333 2211 1466688999999999999875
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=95.87 E-value=0.15 Score=39.42 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=61.9
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHH
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLE 89 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (200)
+|+|++.++.+|..++..+.......+.++.++|+..... ....+..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~--------------------------------~~~~~~~~ 48 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLR--------------------------------PESDEEAA 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC--------------------------------chHHHHHH
Confidence 6899999999999999988887766677899999932100 01134556
Q ss_pred HHHHHHHHhCCCcceEEEEE--E-ecC--CcH--------HHHHHHHHHHcCCCEEEEecCC
Q 045490 90 EMKQACEVAKPKLRVHVEKV--H-TES--GNK--------AAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~~~--~-~~g--~~~--------~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.+.+.++..+ ++..+. . ..+ .++ .+.+.++|++++++.|+.|.+.
T Consensus 49 ~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~ 106 (185)
T cd01992 49 FVADLCAKLG----IPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHA 106 (185)
T ss_pred HHHHHHHHcC----CcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 6666666554 444332 1 111 110 1557788999999999999875
No 23
>PRK12342 hypothetical protein; Provisional
Probab=95.76 E-value=0.15 Score=42.18 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=57.3
Q ss_pred CCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHHH
Q 045490 17 PTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQACE 96 (200)
Q Consensus 17 ~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (200)
.++...+|++.|+.+. ..+.+|+++++-++. ....+.+.++...
T Consensus 33 iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~---------------------------------a~~~~l~r~alam-- 76 (254)
T PRK12342 33 ISQFDLNAIEAASQLA-TDGDEIAALTVGGSL---------------------------------LQNSKVRKDVLSR-- 76 (254)
T ss_pred CChhhHHHHHHHHHHh-hcCCEEEEEEeCCCh---------------------------------HhHHHHHHHHHHc--
Confidence 5667789999999998 678999999993211 0011123334333
Q ss_pred HhCCCcceEEEEEEecCCcH---HHHHHHHHHHcCCCEEEEecCC
Q 045490 97 VAKPKLRVHVEKVHTESGNK---AAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 97 ~~~~~~~v~v~~~~~~g~~~---~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+....+.+.-....|.|+ +..|..++++.++|||++|...
T Consensus 77 --GaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s 119 (254)
T PRK12342 77 --GPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGS 119 (254)
T ss_pred --CCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 555455554444445566 7899999999999999999765
No 24
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=95.26 E-value=0.3 Score=40.39 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=57.2
Q ss_pred CCcchHHHHHHHHHhcCCCC-CeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 17 PTRESAGALQYALSHVLLEE-DELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 17 ~s~~s~~al~~A~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
.++...+|++.|+.+..+.+ .+|+++++-++. ....+.+.++...
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~---------------------------------a~~~~~lr~aLAm- 79 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKA---------------------------------LTNAKGRKDVLSR- 79 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcc---------------------------------hhhHHHHHHHHHc-
Confidence 56667899999999988765 799999993211 0112345554443
Q ss_pred HHhCCCcceEEEEEEecCCc---HHHHHHHHHHHcCCCEEEEecCC
Q 045490 96 EVAKPKLRVHVEKVHTESGN---KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~---~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+....+.+......|.| .+..|..++++.++|||++|...
T Consensus 80 ---GaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s 122 (256)
T PRK03359 80 ---GPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGS 122 (256)
T ss_pred ---CCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 55545555433333433 47888999999999999999865
No 25
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=94.80 E-value=0.11 Score=39.48 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=55.4
Q ss_pred eEEEEECCC-----cchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccch
Q 045490 10 KVMVIADPT-----RESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGG 84 (200)
Q Consensus 10 ~IlVavD~s-----~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (200)
+|||-.+.. +.+..++..|..++...+.+++++.+-+. +.
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~----------------------------------~~- 45 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPA----------------------------------EE- 45 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETC----------------------------------CC-
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecc----------------------------------hh-
Confidence 467777644 56889999999999999999999988310 11
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCC---cHHHHHHHHHHHcCCCEEEEecCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESG---NKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~---~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
..+.+++.+..++...-+.++....... ...+.|.+.+++.++|+|++|...
T Consensus 46 --~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 46 --AAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp --HHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred --hHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 2223333333334221111111111111 246789999999999999999865
No 26
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=94.43 E-value=0.86 Score=34.90 Aligned_cols=36 Identities=22% Similarity=0.105 Sum_probs=29.5
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCC--CCeEEEEEee
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLE--EDELVLLHVD 45 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~--~a~l~llhV~ 45 (200)
+|+|++.+..+|..++..+....... +-+++++|+.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d 38 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVD 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEE
Confidence 58999999999998888877766544 5689999994
No 27
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=93.67 E-value=0.69 Score=38.34 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=58.6
Q ss_pred ECCCcchHHHHHHHHHhcC-CCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHH
Q 045490 15 ADPTRESAGALQYALSHVL-LEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQ 93 (200)
Q Consensus 15 vD~s~~s~~al~~A~~la~-~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 93 (200)
...++....|++.|+.+.. ..+++|+++++-+ .+.++.+.++..
T Consensus 33 ~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp-----------------------------------~~a~~~lr~aLA 77 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEKGYGGEVTVLTMGP-----------------------------------PQAEEALREALA 77 (260)
T ss_pred cccChhhHHHHHHHHHhhccCCCceEEEEEecc-----------------------------------hhhHHHHHHHHh
Confidence 3445667899999999998 5889999999932 122344444333
Q ss_pred HHHHhCCCcceEEEEEEecCCc---HHHHHHHHHHHcCCCEEEEecCC
Q 045490 94 ACEVAKPKLRVHVEKVHTESGN---KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 94 ~~~~~~~~~~v~v~~~~~~g~~---~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.+....+.++.+...+.+ .+..|...+++.+.|||++|...
T Consensus 78 ----mGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa 121 (260)
T COG2086 78 ----MGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQA 121 (260)
T ss_pred ----cCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 365555555533333443 57888999999999999999754
No 28
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=93.42 E-value=2.5 Score=32.58 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 045490 117 AAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.+.|.+.+++.++|+|++|.+.
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~ 101 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATS 101 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcc
Confidence 5788888898999999999865
No 29
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.78 E-value=1.7 Score=36.07 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
..+|+|++.+..+|..++.....+... -.+.++||.
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd 56 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVD 56 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEec
Confidence 479999999999999888777777655 789999994
No 30
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=90.62 E-value=1.2 Score=37.68 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHc-------CCCEEEEecCC-CCCccc-ccccccCCCccC
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAH-------GVDLLIIGQRR-SLSNAI-LGYRRAGGSLRG 156 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~-------~~dllVmG~~~-~~~~~~-~G~~~~~~~~~~ 156 (200)
+.+..+...++...+...+.+-...+.|.+....|++..+.. ++|+||+++.| ++.+.+ |-.
T Consensus 26 Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~--------- 96 (319)
T PF02601_consen 26 AAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFND--------- 96 (319)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccCh---------
Confidence 344555555555567666666666777888888888877664 38999999977 444433 221
Q ss_pred CCCcChHHHHHcCCCccEEEE
Q 045490 157 SKGVDTAEYLIQNSKCNCVGV 177 (200)
Q Consensus 157 ~~~~s~~~~vl~~s~~pVLvv 177 (200)
-...+-+-.+++||+.=
T Consensus 97 ----e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 97 ----EEVARAIAASPIPVISA 113 (319)
T ss_pred ----HHHHHHHHhCCCCEEEe
Confidence 12234455788998753
No 31
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=90.08 E-value=6.9 Score=32.13 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=30.0
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCC--CCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLE--EDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~--~a~l~llhV~ 45 (200)
...+|+|++.++.+|...+.++..+.... +-+|..+|+.
T Consensus 28 ~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 28 EGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 45799999999999998887776665443 3478888883
No 32
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=89.00 E-value=9.5 Score=30.29 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=55.8
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHH
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFL 88 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (200)
+||.|-+.++-...+|+--|+. ....+++|.++-...++ --.+
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~------------------------------------A~~l 43 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKAD------------------------------------AYAL 43 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCC------------------------------------CHHH
Confidence 4788888888888899988887 44457888887773211 1345
Q ss_pred HHHHHHHHHhCCCcceEEEEEEecCC----cHHHHHHHHHHHcCCCEEEEec
Q 045490 89 EEMKQACEVAKPKLRVHVEKVHTESG----NKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~v~v~~~~~~g~----~~~~~I~~~a~~~~~dllVmG~ 136 (200)
+++++. +++....-.... .-.+.|.+..+++++|+||+..
T Consensus 44 erA~~~--------gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 44 ERAAKA--------GIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred HHHHHc--------CCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 555443 355433222222 1568899999999999999974
No 33
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=88.70 E-value=6.8 Score=32.05 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=28.3
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
..++++|++.+.-+|.-++..+... +.++..+|+.
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~ 45 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVV 45 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEec
Confidence 3578999999999999888777654 5678899983
No 34
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.47 E-value=2.4 Score=37.75 Aligned_cols=91 Identities=12% Similarity=-0.028 Sum_probs=60.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|+.-....||..|+..+...+..|+.+++.++..+. .......-..+.+..+.+.+
T Consensus 32 DLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~------------------------~~~~r~~Fl~esL~~L~~~L 87 (454)
T TIGR00591 32 DQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLA------------------------ATRRHYFFMLGGLDEVANEC 87 (454)
T ss_pred chhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCccc------------------------ccHHHHHHHHHHHHHHHHHH
Confidence 555566678888887766556689999997544210 00011111235555566555
Q ss_pred HHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 96 EVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
++. ++.. .+..|+ +.+.|.+.+++++++.|+.-..
T Consensus 88 ~~~----g~~L--~v~~g~-~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 88 ERL----IIPF--HLLDGP-PKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHc----CCce--EEeecC-hHHHHHHHHHHcCCCEEEEecc
Confidence 554 3444 566788 9999999999999999999864
No 35
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=87.87 E-value=6.2 Score=29.95 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHc---CCCEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAH---GVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~---~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
+....+++...+++++ ++++.++..-..-.+.+.+++++. +++.+|.++.. .+
T Consensus 12 D~~~~~~a~~~L~~~g----i~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~------~a-------------- 67 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFG----IPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGM------SA-------------- 67 (150)
T ss_dssp GHHHHHHHHHHHHHTT-----EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEES------S---------------
T ss_pred HHHHHHHHHHHHHHcC----CCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCC------cc--------------
Confidence 3467888888888764 888888887776667777777664 56877777644 11
Q ss_pred ChHHHHHcCCCccEEEEecCCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
..+.-+.-.+.+||+-|+....
T Consensus 68 ~Lpgvva~~t~~PVIgvP~~~~ 89 (150)
T PF00731_consen 68 ALPGVVASLTTLPVIGVPVSSG 89 (150)
T ss_dssp -HHHHHHHHSSS-EEEEEE-ST
T ss_pred cchhhheeccCCCEEEeecCcc
Confidence 3445567778999999976654
No 36
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=87.62 E-value=8.7 Score=32.54 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=30.5
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+.+++|++.+..+|...|..|.......+..+.++|+.
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iD 64 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVD 64 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEe
Confidence 57899999999999988888876654435578899994
No 37
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=85.54 E-value=7.2 Score=29.73 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHH---HHcCCCEEEEecCCCCCcccccccccCCCccCCCCcC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQS---TAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a---~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
-+.++++.+.++++ +++++.++++-+.--+.+.+++ ++.++..||-|+.+.- .
T Consensus 15 ~~~mk~Aa~~L~~f----gi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAA--------------------H 70 (162)
T COG0041 15 WDTMKKAAEILEEF----GVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAA--------------------H 70 (162)
T ss_pred HHHHHHHHHHHHHc----CCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchh--------------------h
Confidence 35777777887776 4888888887665555555554 5677788888887610 1
Q ss_pred hHHHHHcCCCccEEEEecCCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~~ 182 (200)
...-+.-.++.||+-|+-++.
T Consensus 71 LPGmvAa~T~lPViGVPv~s~ 91 (162)
T COG0041 71 LPGMVAAKTPLPVIGVPVQSK 91 (162)
T ss_pred cchhhhhcCCCCeEeccCccc
Confidence 222356678999999987754
No 38
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=85.48 E-value=3.7 Score=36.45 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcC---CCEEEEecCC-CCCccc-ccccccCCCccCCCCc
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHG---VDLLIIGQRR-SLSNAI-LGYRRAGGSLRGSKGV 160 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~---~dllVmG~~~-~~~~~~-~G~~~~~~~~~~~~~~ 160 (200)
+.+..+...+....|...+.+-...+.|......|++..+..+ +|+||+++.| ++.+.. |..
T Consensus 147 Aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~------------- 213 (438)
T PRK00286 147 AAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFND------------- 213 (438)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc-------------
Confidence 4445555555555565455555556678888888888876644 4999999977 544433 221
Q ss_pred ChHHHHHcCCCccEEEE
Q 045490 161 DTAEYLIQNSKCNCVGV 177 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv 177 (200)
-..-+.+-++++||+.=
T Consensus 214 e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 214 EAVARAIAASRIPVISA 230 (438)
T ss_pred HHHHHHHHcCCCCEEEe
Confidence 12234555789998754
No 39
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=84.33 E-value=12 Score=28.62 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHH---HHcCCCEEEEecCCCCCcccccccccCCCccCCCCcC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQS---TAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a---~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
...++++...+++++ ++++..+..-+.-.+.+.+++ ++.+++.+|.++.. .+ .
T Consensus 11 ~~~~~~a~~~L~~~g----i~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~------aa--------------~ 66 (156)
T TIGR01162 11 LPTMKKAADILEEFG----IPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGG------AA--------------H 66 (156)
T ss_pred HHHHHHHHHHHHHcC----CCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCc------cc--------------h
Confidence 357777777777664 667777776554444444444 55678888888765 11 3
Q ss_pred hHHHHHcCCCccEEEEecCCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~~ 182 (200)
.+.-+.-.+..||+-|+....
T Consensus 67 Lpgvva~~t~~PVIgvP~~~~ 87 (156)
T TIGR01162 67 LPGMVAALTPLPVIGVPVPSK 87 (156)
T ss_pred hHHHHHhccCCCEEEecCCcc
Confidence 444567788899998876543
No 40
>PRK13820 argininosuccinate synthase; Provisional
Probab=83.85 E-value=22 Score=31.39 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=29.1
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCC-eEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEED-ELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a-~l~llhV~ 45 (200)
|.++|+|++.+.-+|..++.++.+. .+. +|+.+|+.
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e~---~g~~~Viav~vd 37 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKEK---YGYDEVITVTVD 37 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHHh---cCCCEEEEEEEE
Confidence 4689999999999999888887543 453 89999994
No 41
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=83.76 E-value=5.6 Score=35.39 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHc----CCCEEEEecCC-CCCcccccccccCCCccCCCCc
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAH----GVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~----~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
+.+..+...+....|..++.+-...+.|......|++.++.. ++|+||+|+.| +..+.+.-+ +
T Consensus 141 aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn-----~------- 208 (432)
T TIGR00237 141 AALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFN-----D------- 208 (432)
T ss_pred HHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcC-----c-------
Confidence 444555555555556655666556677888888888877643 37999999977 554433211 0
Q ss_pred ChHHHHHcCCCccEEEE
Q 045490 161 DTAEYLIQNSKCNCVGV 177 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv 177 (200)
-..-+.+-.+++||+.-
T Consensus 209 e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 209 EKVARAIFLSKIPIISA 225 (432)
T ss_pred HHHHHHHHcCCCCEEEe
Confidence 12334456788998864
No 42
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=83.21 E-value=18 Score=28.21 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=24.4
Q ss_pred EEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 11 VMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 11 IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
|+|++.+..+|..++.++.... +.+++.+|+.
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd 32 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTAT 32 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeC
Confidence 6899999999998887776543 2278888983
No 43
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=81.45 E-value=6.9 Score=34.85 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHH----cCCCEEEEecCC-CCCcccccccccCCCccCCCCcC
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTA----HGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~----~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
.+..+...+....|...+.+-...+.|++..++|++.++. ..+|.||+|..| ++.+.+.-+ . -
T Consensus 148 airDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FN-----d-------E 215 (440)
T COG1570 148 ALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFN-----D-------E 215 (440)
T ss_pred HHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccC-----h-------H
Confidence 3333444444446665666666667799888998887754 349999999987 666544321 0 2
Q ss_pred hHHHHHcCCCccEEE
Q 045490 162 TAEYLIQNSKCNCVG 176 (200)
Q Consensus 162 ~~~~vl~~s~~pVLv 176 (200)
..-+-+-.+++||+-
T Consensus 216 ~vaRAi~~s~iPvIS 230 (440)
T COG1570 216 IVARAIAASRIPVIS 230 (440)
T ss_pred HHHHHHHhCCCCeEe
Confidence 333555678999874
No 44
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=81.42 E-value=5.7 Score=30.54 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++.++++.+.+++..|.+++.-...-..+.+-.+.|++.+++.++|+|++|-..
T Consensus 56 ~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~ 109 (171)
T cd06533 56 PEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGA 109 (171)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 467777777777777885443322222333345668999999999999999755
No 45
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=80.57 E-value=23 Score=26.98 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=26.6
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+++|++.+..+|..++.++.+ .+.+++.+|+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d 32 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFN 32 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEe
Confidence 589999999999988877765 26789999994
No 46
>PLN00200 argininosuccinate synthase; Provisional
Probab=79.65 E-value=27 Score=30.89 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=29.8
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
|.++|+|++.+.-+|..++.++.+. .+.+|+.+|+.
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e~---~G~eViav~id 39 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLREN---YGCEVVCFTAD 39 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHh---hCCeEEEEEEE
Confidence 4689999999999999999888652 36689999994
No 47
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=79.59 E-value=8 Score=27.01 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHhCCCc---------ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 84 GEDFLEEMKQACEVAKPKL---------RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~---------~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
.++.+++++.+++..+-.. ..+..+.+..| -.++|.+.++.+++|+||.-..
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~G--K~eei~~~~~~~~~d~vvfd~~ 66 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSG--KVEEIKELIEELDADLVVFDNE 66 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechh--HHHHHHHHHhhcCCCEEEECCC
Confidence 4678999999988865221 01111112233 4899999999999999999864
No 48
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=79.15 E-value=18 Score=32.17 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=30.3
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhc-CCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHV-LLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la-~~~~a~l~llhV~ 45 (200)
...+|+|++.+..+|...+.....+. ...+.+|+++||.
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvn 53 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVH 53 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 45899999999999987776665554 2346789999994
No 49
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=79.01 E-value=16 Score=29.40 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=43.3
Q ss_pred cceEEEEEEecCC--cH---HHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEE
Q 045490 102 LRVHVEKVHTESG--NK---AAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVG 176 (200)
Q Consensus 102 ~~v~v~~~~~~g~--~~---~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLv 176 (200)
.++.+.+ +..|. +| .....+..++.++|.||+++.+. ..-|. +-+..++..+..|++|
T Consensus 30 edi~vrV-vgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNp---aaPGP-------------~kARE~l~~s~~Paii 92 (277)
T COG1927 30 EDIEVRV-VGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNP---AAPGP-------------KKAREILSDSDVPAII 92 (277)
T ss_pred CCceEEE-eccccccChHHHHHHHHHHHHhcCCCEEEEeCCCC---CCCCc-------------hHHHHHHhhcCCCEEE
Confidence 3566642 33433 33 35566777889999999998761 11232 7889999999999999
Q ss_pred EecCC
Q 045490 177 VQRKG 181 (200)
Q Consensus 177 v~~~~ 181 (200)
+.+-+
T Consensus 93 igDaP 97 (277)
T COG1927 93 IGDAP 97 (277)
T ss_pred ecCCc
Confidence 96543
No 50
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=78.60 E-value=7.9 Score=29.75 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++.++++.+.+++..|.+.+.-...-....+-.+.|++.+++.++|+|++|-..
T Consensus 58 ~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 58 EEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 467777778777777774433211111122368999999999999999999754
No 51
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=78.19 E-value=5.4 Score=30.16 Aligned_cols=47 Identities=4% Similarity=0.129 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.+.+..+.+.+++.+ +.. .+..|+ +.+.|.+.+++++++.|+....-
T Consensus 52 ~~sL~~L~~~L~~~g----~~L--~v~~g~-~~~~l~~l~~~~~~~~V~~~~~~ 98 (165)
T PF00875_consen 52 LESLADLQESLRKLG----IPL--LVLRGD-PEEVLPELAKEYGATAVYFNEEY 98 (165)
T ss_dssp HHHHHHHHHHHHHTT----S-E--EEEESS-HHHHHHHHHHHHTESEEEEE---
T ss_pred HHHHHHHHHHHHhcC----cce--EEEecc-hHHHHHHHHHhcCcCeeEecccc
Confidence 355566666665543 554 678888 99999999999999999998753
No 52
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=77.77 E-value=25 Score=25.82 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=27.0
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+|+|++.+..+|...+..+....... ..+.++|+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeC
Confidence 58999999999998888777655432 478888884
No 53
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=76.25 E-value=31 Score=26.00 Aligned_cols=84 Identities=23% Similarity=0.213 Sum_probs=51.0
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHH
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLE 89 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (200)
+|+|++.+..+|..++..+... +..+..+|+.... .. . ...+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~~--------------------------~~-----~---~~~~ 42 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYGQ--------------------------RH-----A---KEEE 42 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECCC--------------------------CC-----h---hHHH
Confidence 5899999999999888776542 4468888884210 00 0 1113
Q ss_pred HHHHHHHHhCCCcceEEEEEEecCCc--HHHHHHHHHHHcCCCEEEEecCC
Q 045490 90 EMKQACEVAKPKLRVHVEKVHTESGN--KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~~~~~~g~~--~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.++..+++.++. . ...+.+ ....+.+.+++++++.|+.|.+.
T Consensus 43 ~~~~~~~~~g~~--~-----~~~~~~~~~~~~l~~~a~~~g~~~i~~G~~~ 86 (169)
T cd01995 43 AAKLIAEKLGPS--T-----YVPARNLIFLSIAAAYAEALGAEAIIIGVNA 86 (169)
T ss_pred HHHHHHHHHCCC--E-----EEeCcCHHHHHHHHHHHHHCCCCEEEEeecc
Confidence 344444444432 1 112222 23456777899999999999875
No 54
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=75.66 E-value=48 Score=28.01 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=29.7
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+.++++++.+.++|...|..+.......+..+.++|+.
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~ID 56 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVD 56 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEe
Confidence 45678889999999988888877654334678999994
No 55
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=75.18 E-value=55 Score=28.47 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=28.4
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
...+++|++.+.-+|..++.++.. .+.+++.+|+.
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~ 205 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFF 205 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEe
Confidence 457999999999999988866644 36789999994
No 56
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=74.98 E-value=15 Score=35.20 Aligned_cols=41 Identities=20% Similarity=0.096 Sum_probs=34.0
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCC
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPN 48 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~ 48 (200)
..+|.+..=+.++...|+.++..++.++..++++++.++.+
T Consensus 614 ~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~ 654 (769)
T KOG1650|consen 614 SYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDE 654 (769)
T ss_pred eeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccc
Confidence 34677777778888889999999999889999999996543
No 57
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=74.48 E-value=3.1 Score=29.36 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
-.+.|+++|+++++||+|+|.-.
T Consensus 50 d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 50 DPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp -HHHHHHHHHHTTESEEEESSHH
T ss_pred CHHHHHHHHHHcCCCEEEECChH
Confidence 47899999999999999999854
No 58
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=73.25 E-value=52 Score=29.03 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.9
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+|+|++.+.-+|..++.|+.+. +.+|+.+|+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id 32 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTAD 32 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEe
Confidence 5899999999999888887653 6789999994
No 59
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=73.07 E-value=27 Score=23.98 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=24.3
Q ss_pred EEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 11 VMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 11 IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
|+|++.+..+|...+..+.... .++.++|+.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~ 31 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----YQVIAVTVD 31 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----CCEEEEEEc
Confidence 5899999999988877776652 278999993
No 60
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=72.34 E-value=26 Score=30.86 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=56.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|+.-....||..|++.+ ..|..|+++++..+.. ...... .........-..+.++++.+.+
T Consensus 10 DLRl~DN~aL~~A~~~~----~~vl~vfi~dp~~~~~--------~~~~~~-------~~~~~~r~~Fl~esL~~L~~~L 70 (429)
T TIGR02765 10 DLRVHDNPALYKASSSS----DTLIPLYCFDPRQFKL--------THFFGF-------PKTGPARGKFLLESLKDLRTSL 70 (429)
T ss_pred CCccccHHHHHHHHhcC----CeEEEEEEECchHhcc--------cccccc-------CCCCHHHHHHHHHHHHHHHHHH
Confidence 55555667887777543 3699999976543110 000000 0000001111235566666666
Q ss_pred HHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 96 EVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
++.+ +.. .+..|+ +.+.|.+.+++++++.|+.-..
T Consensus 71 ~~~g----~~L--~v~~G~-~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 71 RKLG----SDL--LVRSGK-PEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHcC----CCe--EEEeCC-HHHHHHHHHHHhCCCEEEEecc
Confidence 5543 444 566788 9999999999999999999864
No 61
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=71.93 E-value=14 Score=28.65 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCC---cHHHHHHHHHHHcCCCEEEEecCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESG---NKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~---~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++.++++.+.+++..|.+++-. . .|. +-.+.|++.+++.++|+|++|-..
T Consensus 58 ~~v~~~~~~~l~~~yP~l~i~g--~--~g~f~~~~~~~i~~~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 58 PDVLQQLKVKLIKEYPKLKIVG--A--FGPLEPEERKAALAKIARSGAGIVFVGLGC 110 (177)
T ss_pred HHHHHHHHHHHHHHCCCCEEEE--E--CCCCChHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4677788888887778754433 2 222 234779999999999999999654
No 62
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=69.93 E-value=74 Score=27.66 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=27.3
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+.++|+|++.+.-+|..++..+.+ .+.+++.+|+.
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~ 38 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFR 38 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEe
Confidence 356999999999999987766644 35678998883
No 63
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=69.49 E-value=22 Score=31.99 Aligned_cols=90 Identities=16% Similarity=0.088 Sum_probs=54.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|+.-....||..|+.. +..|..+++.++..+. .+ ........-.-+.+..+.+.+
T Consensus 10 DLRl~DN~AL~~A~~~----~~~vl~vfi~dp~~~~--------~~-------------~~~~~r~~Fl~esL~~L~~~L 64 (471)
T TIGR03556 10 DLRLSDNIGLAAARQQ----SAKVVGLFCLDPNILQ--------AD-------------DMAPARVAYLIGCLQELQQRY 64 (471)
T ss_pred CCCcchHHHHHHHHhc----CCCEEEEEEEchhhhc--------cc-------------cCCHHHHHHHHHHHHHHHHHH
Confidence 4444556678777642 4579999997654210 00 000000011234555555555
Q ss_pred HHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 96 EVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
++. ++.. .+..|. +.+.|.+.+++++++.|+.-..
T Consensus 65 ~~~----G~~L--~v~~G~-p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 65 QQA----GSQL--LILQGD-PVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHC----CCCe--EEEECC-HHHHHHHHHHHcCCCEEEEecc
Confidence 544 3444 567788 9999999999999999998764
No 64
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=68.45 E-value=75 Score=27.15 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=30.5
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+.++++++.+.++|...|..+...+...+..+-++|+.
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VD 74 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVD 74 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeC
Confidence 56788999999999998888877665445578899994
No 65
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=68.25 E-value=16 Score=29.94 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 117 AAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
.+...+..++.++|++|+-+.+ ...-|. .-+.+++..+.+|++|+.+.
T Consensus 49 ~~~~~~~~~~~~pDf~i~isPN---~a~PGP-------------~~ARE~l~~~~iP~IvI~D~ 96 (277)
T PRK00994 49 EEVVKKMLEEWKPDFVIVISPN---PAAPGP-------------KKAREILKAAGIPCIVIGDA 96 (277)
T ss_pred HHHHHHHHHhhCCCEEEEECCC---CCCCCc-------------hHHHHHHHhcCCCEEEEcCC
Confidence 3445556678999999998865 111232 67899999999999999644
No 66
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=67.68 E-value=88 Score=28.02 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC-CCCcccccccccCCCccCCCCcChHH---------HHHcCCCccEEEEecCC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTAE---------YLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~~---------~vl~~s~~pVLvv~~~~ 181 (200)
-.+.|++.+++.++|++|+-+=. -+...+.. ..||+++ ++.++..+++++|..=-
T Consensus 156 ~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~S-----------apGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVT 220 (456)
T COG1066 156 NLEDIIAELEQEKPDLVVIDSIQTLYSEEITS-----------APGSVSQVREVAAELMRLAKTKNIAIFIVGHVT 220 (456)
T ss_pred CHHHHHHHHHhcCCCEEEEeccceeecccccC-----------CCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEc
Confidence 37889999999999999999843 22222211 1224443 45567789999985433
No 67
>PRK04527 argininosuccinate synthase; Provisional
Probab=67.05 E-value=51 Score=29.16 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=28.6
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
|.++|+|++.+.-+|.-++.|+.+ .+.+++.+++.
T Consensus 1 ~~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d 35 (400)
T PRK04527 1 SSKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFAD 35 (400)
T ss_pred CCCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEE
Confidence 357899999999999999988766 25678888884
No 68
>PRK00766 hypothetical protein; Provisional
Probab=66.83 E-value=19 Score=28.57 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=42.9
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHH----cCCCEEEEecCC-CCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEE
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTA----HGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGV 177 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~----~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv 177 (200)
++-.....+.|.|.-+.|++.++. .++.+|++..=. ++.+++- .+.+-+++..||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNvvD-----------------~~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNVVD-----------------IEELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEEec-----------------HHHHHHHHCCCEEEE
Confidence 355566778899999999999987 355677776532 3333332 256888899999999
Q ss_pred --ecCC
Q 045490 178 --QRKG 181 (200)
Q Consensus 178 --~~~~ 181 (200)
+.+.
T Consensus 105 ~r~~p~ 110 (194)
T PRK00766 105 MRKKPD 110 (194)
T ss_pred EecCCC
Confidence 5444
No 69
>PRK00509 argininosuccinate synthase; Provisional
Probab=66.24 E-value=95 Score=27.49 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=29.4
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+.++|+|++.+.-+|..++.|+.+. .+.+|+.+|+.
T Consensus 1 ~~~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d 36 (399)
T PRK00509 1 MKKKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTAD 36 (399)
T ss_pred CCCeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEe
Confidence 3569999999999999888887663 36689999995
No 70
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=65.93 E-value=43 Score=29.55 Aligned_cols=38 Identities=5% Similarity=0.021 Sum_probs=29.1
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
...++|++++-++-.+.+++++.-.+. +.+.+|.++--
T Consensus 4 l~~k~IllgvTGsiaa~k~~~lv~~L~-~~g~~V~vv~T 41 (399)
T PRK05579 4 LAGKRIVLGVSGGIAAYKALELVRRLR-KAGADVRVVMT 41 (399)
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEEC
Confidence 356899999999999998988877774 45777665443
No 71
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=65.86 E-value=42 Score=30.38 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=29.5
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
..++|++++-+|-.+.++++++-.+. +.+.+|.++--
T Consensus 69 ~~k~IllgVtGsIAayka~~lvr~L~-k~G~~V~VvmT 105 (475)
T PRK13982 69 ASKRVTLIIGGGIAAYKALDLIRRLK-ERGAHVRCVLT 105 (475)
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHH-hCcCEEEEEEC
Confidence 36899999999999999999988885 45777666544
No 72
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=61.76 E-value=1e+02 Score=26.23 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=27.6
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.++++|++.+.-+|.-++..+... .+.+++.+|+.
T Consensus 16 ~~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd 50 (311)
T TIGR00884 16 DAKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVD 50 (311)
T ss_pred CCcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEe
Confidence 378999999999998877666443 35689999994
No 73
>PRK08349 hypothetical protein; Validated
Probab=61.26 E-value=76 Score=24.70 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.0
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.+++|++.+..+|..++.++.. .+.+|+.+|+.
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d 33 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFR 33 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEe
Confidence 4789999999999988855443 46789999994
No 74
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=59.90 E-value=26 Score=32.18 Aligned_cols=73 Identities=10% Similarity=0.076 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHH---HHHcCCCEEEEecCCCCCcccccccccCCCccCCC
Q 045490 82 PGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQ---STAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSK 158 (200)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~---a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~ 158 (200)
-...++.+.+++.+.++... +++.++.+. ..+++..+ ....++|.|| ++|
T Consensus 20 ~~~~~l~~~~~~i~~~~~~~----~~~~~~~~~-~~~~v~~~~~~~~~~~~dviI--srG-------------------- 72 (538)
T PRK15424 20 VSVSRLFELFRDISLEFDHL----ANITPIQLG-FEKAVTYIRKRLATERCDAII--AAG-------------------- 72 (538)
T ss_pred eeHHHHHHHHHHHHHhcCCC----ceEEehhhh-HHHHHHHHHHHHhhCCCcEEE--ECc--------------------
Confidence 34556777777777766433 333444544 34433333 3345788877 333
Q ss_pred CcChHHHHHcCCCccEEEEecCCCC
Q 045490 159 GVDTAEYLIQNSKCNCVGVQRKGQN 183 (200)
Q Consensus 159 ~~s~~~~vl~~s~~pVLvv~~~~~~ 183 (200)
++++.+-++.++||+.|+-...|
T Consensus 73 --~ta~~i~~~~~iPVv~i~~s~~D 95 (538)
T PRK15424 73 --SNGAYLKSRLSVPVILIKPSGFD 95 (538)
T ss_pred --hHHHHHHhhCCCCEEEecCCHhH
Confidence 58888888899999999877664
No 75
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=59.77 E-value=49 Score=28.34 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCC---cHHHHHHHHHHHcCCCEEE-EecCCCCCcccccccccCCCccCCCCcCh
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESG---NKAAIILSQSTAHGVDLLI-IGQRRSLSNAILGYRRAGGSLRGSKGVDT 162 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~---~~~~~I~~~a~~~~~dllV-mG~~~~~~~~~~G~~~~~~~~~~~~~~s~ 162 (200)
..+++...+++. ++.+++.+..|+ +..+.+.+.+++.++|+|| +|... .. ++
T Consensus 37 ~~~~v~~~l~~~----~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs------~~--------------D~ 92 (349)
T cd08550 37 SRPRFEAALAKS----IIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGK------TL--------------DT 92 (349)
T ss_pred HHHHHHHHHHhc----CCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcH------HH--------------HH
Confidence 345555555543 243333334444 2456677888889999888 56543 11 46
Q ss_pred HHHHHcCCCccEEEEecCC
Q 045490 163 AEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 163 ~~~vl~~s~~pVLvv~~~~ 181 (200)
++.+.....+|++.|+-..
T Consensus 93 aK~ia~~~~~p~i~VPTta 111 (349)
T cd08550 93 AKAVADRLDKPIVIVPTIA 111 (349)
T ss_pred HHHHHHHcCCCEEEeCCcc
Confidence 6666666678999997554
No 76
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=58.65 E-value=15 Score=27.28 Aligned_cols=48 Identities=15% Similarity=-0.034 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC----CC---CcccccccccCCCccCCCCcChHHHHHcCCCccEEEEe
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRR----SL---SNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQ 178 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~----~~---~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~ 178 (200)
..+.|.+.+++++++.||+|-.- .. ...+. ..++.+-++.++||..+.
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~---------------~f~~~L~~~~~~~v~~~D 96 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERAR---------------KFANRLEGRFGLPVVLVD 96 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHH---------------HHHHHHHHHhCCCEEEEc
Confidence 37888889999999999999421 11 01111 355566666689988884
No 77
>PRK00919 GMP synthase subunit B; Validated
Probab=57.96 E-value=1.2e+02 Score=25.83 Aligned_cols=35 Identities=23% Similarity=0.166 Sum_probs=28.6
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.++++|++.+.-+|.-++.++... .+.+++.+|+.
T Consensus 21 ~~kVlVa~SGGVDSsvla~la~~~---lG~~v~aV~vD 55 (307)
T PRK00919 21 DGKAIIALSGGVDSSVAAVLAHRA---IGDRLTPVFVD 55 (307)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHH---hCCeEEEEEEE
Confidence 479999999999999888776552 46789999995
No 78
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=57.04 E-value=1.3e+02 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=25.3
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
++|+|++.+..+|..++..+.+ .+..|+.+|+.
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~ 33 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMK 33 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEe
Confidence 4899999999999877755443 35578899884
No 79
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=56.85 E-value=94 Score=24.35 Aligned_cols=32 Identities=31% Similarity=0.264 Sum_probs=25.5
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
|++|++.+..+|..++.++.+. +.+++.++..
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~ 32 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNL 32 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 5789999999999999888773 4567777764
No 80
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=55.32 E-value=1.3e+02 Score=25.42 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=25.8
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+++|++.+.-+|.-++..+... .+.+++.+|+.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd 33 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVD 33 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEec
Confidence 5899999999998777766542 35679999994
No 81
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=55.21 E-value=1e+02 Score=24.26 Aligned_cols=32 Identities=16% Similarity=-0.054 Sum_probs=24.2
Q ss_pred EEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 13 VIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 13 VavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
++.-.++.+..++..+..+++..++.++++.+
T Consensus 29 ~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~ 60 (202)
T cd01714 29 VPLIINPYDEYAVEEALRLKEKYGGEVTVVSM 60 (202)
T ss_pred CCccCChHhHHHHHHHHHhhhhcCCEEEEEEE
Confidence 44456667888888999988777778877776
No 82
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=55.08 E-value=1.4e+02 Score=25.93 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=67.1
Q ss_pred CeEEEEECCCc--chHHHHHHHHHhcCC---CCCeEE-EEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccccccc
Q 045490 9 RKVMVIADPTR--ESAGALQYALSHVLL---EEDELV-LLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAP 82 (200)
Q Consensus 9 ~~IlVavD~s~--~s~~al~~A~~la~~---~~a~l~-llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (200)
.+.+|-+.+-. .-..+++||..+... ..+++. ++-++-. .| .+...|-+..........-
T Consensus 53 ~rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~e------------KP--RT~~gwkGli~DP~ldgs~ 118 (353)
T PRK12755 53 DRLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFE------------KP--RTTVGWKGLINDPHLDGSF 118 (353)
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccc------------cC--CCCcCCcCCCCCccccccc
Confidence 45666665433 245688888877553 334444 4444311 11 1111222211122222222
Q ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcCh
Q 045490 83 GGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDT 162 (200)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~ 162 (200)
..++-+.-+++++.+ ..+.++++-+++..-. -.+-+.++ +|++-+|+|...++ .
T Consensus 119 ~i~~GL~~~R~ll~~-~~e~Glp~atE~ld~~-~~~y~~Dl-----vs~~aIGARt~esq-------------------~ 172 (353)
T PRK12755 119 DIEEGLRIARKLLLD-LVELGLPLATEALDPI-SPQYLGDL-----ISWGAIGARTTESQ-------------------T 172 (353)
T ss_pred cHHHHHHHHHHHHHH-HHHhCCCEEEEecCcc-cHHHHHhh-----hhheeeccchhcCH-------------------H
Confidence 334555555554333 2334688877777655 34444443 68999999862221 2
Q ss_pred HHHHHcCCCccEEEEecCC
Q 045490 163 AEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 163 ~~~vl~~s~~pVLvv~~~~ 181 (200)
-.+++...++||.+=+..+
T Consensus 173 hre~aSgl~~PVgfKngt~ 191 (353)
T PRK12755 173 HREMASGLSMPVGFKNGTD 191 (353)
T ss_pred HHHHhcCCCCeeEecCCCC
Confidence 2345566788888855443
No 83
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=54.95 E-value=1.1e+02 Score=24.34 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=23.9
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
..++|+.+.+.-+|.-|.- +..+.|.+|+.+|..
T Consensus 3 ~gk~l~LlSGGiDSpVAa~----lm~krG~~V~~l~f~ 36 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAW----LMMKRGCEVIALHFD 36 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHH----HHHCBT-EEEEEEEE
T ss_pred CceEEEEecCCccHHHHHH----HHHHCCCEEEEEEEE
Confidence 4688999999988986553 334468999999995
No 84
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=54.87 E-value=1.6e+02 Score=26.53 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=28.2
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
...++++.+.+..+|.-|+-++... +..|.++|+.
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~kr----G~~v~~l~f~ 210 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMRR----GSRVHYCFFN 210 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHHc----CCEEEEEEEe
Confidence 4579999999999999888665443 6789999995
No 85
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=54.80 E-value=22 Score=26.92 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
..+.|.+.++++++|+|++|...
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~ 93 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATS 93 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCc
Confidence 46778888899999999999865
No 86
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=54.17 E-value=1.3e+02 Score=25.18 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCCEEEEec
Q 045490 116 KAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~ 136 (200)
....+.+..+++++|++|+..
T Consensus 153 ~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 153 AEARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred hHHHHHHHHHHhCCCEEEEec
Confidence 456788889999999999986
No 87
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=54.08 E-value=46 Score=30.49 Aligned_cols=69 Identities=9% Similarity=0.169 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHH---HHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcCh
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQ---STAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDT 162 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~---a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~ 162 (200)
.+.+-+.+.+.++... +++ .+..|+ ..+++..+ ....++|.|| +|| ++
T Consensus 14 ~l~~~~~~i~~~~~~~--~~~--~v~~~~-~~~~~~~a~~~~~~~~~dviI--srG----------------------~t 64 (526)
T TIGR02329 14 RLFDLFRDIAPEFDHR--ANI--TPIQLG-FEDAVREIRQRLGAERCDVVV--AGG----------------------SN 64 (526)
T ss_pred HHHHHHHHHHHhCCCC--ceE--EEEecc-HHHHHHHHHHHHHhCCCcEEE--ECc----------------------hH
Confidence 4455555555544321 233 345555 44444433 4456788777 333 58
Q ss_pred HHHHHcCCCccEEEEecCCCC
Q 045490 163 AEYLIQNSKCNCVGVQRKGQN 183 (200)
Q Consensus 163 ~~~vl~~s~~pVLvv~~~~~~ 183 (200)
++.+-++.++||+-|+-...+
T Consensus 65 a~~i~~~~~iPVv~i~~s~~D 85 (526)
T TIGR02329 65 GAYLKSRLSLPVIVIKPTGFD 85 (526)
T ss_pred HHHHHHhCCCCEEEecCChhh
Confidence 888888899999999877664
No 88
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=53.54 E-value=81 Score=28.65 Aligned_cols=47 Identities=6% Similarity=-0.118 Sum_probs=34.1
Q ss_pred HHHHHHHHHHc----CCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 117 AAIILSQSTAH----GVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 117 ~~~I~~~a~~~----~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
.+.|.+..++. ++|.||+--+. ++. ++..-.+++..++|||+...+.
T Consensus 51 ~~~i~~~~~~~~~~~~~dgvi~~m~T------Fs~------------a~~~i~~~~~l~~PvL~~~~q~ 101 (484)
T cd03557 51 PDEILAVCREANADDNCAGVITWMHT------FSP------------AKMWIAGLTALQKPLLHLHTQF 101 (484)
T ss_pred HHHHHHHHHHccccCCccEEEEccCC------Cch------------HHHHHHHHHHcCCCEEEEccCC
Confidence 55566666664 59999998876 321 1455667888999999998775
No 89
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=52.69 E-value=76 Score=25.99 Aligned_cols=50 Identities=8% Similarity=0.169 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCC-c--HHHHHHHHHHHcCCCEEEEecCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESG-N--KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~-~--~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++.++++.+.+++.. . +++. -...|- + -.+.|++.+++.++|+|++|-..
T Consensus 115 ~~v~~~a~~~l~~~y-~--l~i~-g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 115 PEVLAQTEAKLRTQW-N--VNIV-GSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred HHHHHHHHHHHHHHh-C--CEEE-EEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 456666777666543 3 3321 112333 1 24669999999999999999754
No 90
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=51.98 E-value=72 Score=22.38 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=25.5
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
++++ .......+.+.+++.+.+.++|+|+++..
T Consensus 27 G~~V--~~lg~~~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 27 GFEV--IDLGVDVPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred CCEE--EECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 4555 33334458899999999999999999875
No 91
>PRK08576 hypothetical protein; Provisional
Probab=50.47 E-value=1.9e+02 Score=25.97 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=25.3
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+|+|++.+..+|..++..+..... .+.++|+.
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~----~V~aV~iD 267 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVD 267 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeC
Confidence 899999999999988877766532 37788873
No 92
>TIGR00930 2a30 K-Cl cotransporter.
Probab=50.19 E-value=2.5e+02 Score=27.94 Aligned_cols=97 Identities=10% Similarity=0.064 Sum_probs=60.1
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHH
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFL 88 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (200)
.+|||.++..+.....+++|-.+. +...-.++.||.+.+. ....++.++..
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~-~~~gl~i~~~v~~~~~----------------------------~~~~~~~~~~~ 626 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFT-KGKGLMICGSVIQGPR----------------------------LECVKEAQAAE 626 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhc-cCCcEEEEEEEecCch----------------------------hhhHHHHHHHH
Confidence 379999987777788889988887 4445777778853211 01111222333
Q ss_pred HHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHH-----cCCCEEEEecCC
Q 045490 89 EEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTA-----HGVDLLIIGQRR 138 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~-----~~~dllVmG~~~ 138 (200)
++....+++. +++.=..+..+.+..+.+-..++. .+++.|+||-..
T Consensus 627 ~~~~~~~~~~----~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 627 AKIQTWLEKN----KVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred HHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 4444444433 243333455566688888888876 458999999754
No 93
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=50.03 E-value=1.5e+02 Score=24.75 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=26.9
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
..+||.|-+.++..+..++-.+..- ...+++|.++-.
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~-g~l~~~i~~vis 119 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYS-GELDAEIALVIS 119 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHc-CCCCcEEEEEEE
Confidence 3568999999998888888777554 334667776655
No 94
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=49.64 E-value=1.8e+02 Score=25.39 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=25.3
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
.++|+|++.+.-+|..++.... ..+..++.+|+
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~ 37 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTM 37 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEe
Confidence 4799999999999987765433 24667888888
No 95
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=49.51 E-value=20 Score=30.97 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-C-CCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQR-R-SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~-~-~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
+.+.|++.+++.++|++|.|-- . ..- |.+-|.++..|-++..||++.-=...
T Consensus 68 a~~~i~~mv~~~~pD~viaGPaFnagrY--------------G~acg~v~~aV~e~~~IP~vtaM~~E 121 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIAGPAFNAGRY--------------GVACGEVAKAVQEKLGIPVVTAMYEE 121 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCchH--------------HHHHHHHHHHHHHhhCCCEEEEeccc
Confidence 6788999999999999999962 2 111 22233688888889999999764433
No 96
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=49.40 E-value=1e+02 Score=27.85 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=54.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|+.-+...||.+|+....... +++++.++.-++ ........-..+.++++.+.+
T Consensus 11 DLR~~DN~aL~~A~~~~~~~~---~~vfi~~~~~~~-----------------------~~~~~~~~Fl~~sL~~L~~~L 64 (461)
T COG0415 11 DLRLTDNAALAAACQSGQPVI---IAVFILDPEQLG-----------------------HASPRHAAFLLQSLQALQQSL 64 (461)
T ss_pred ccccCChHHHHHHHhcCCCce---EEEEEechhhcc-----------------------ccCHHHHHHHHHHHHHHHHHH
Confidence 555566778888877655333 666665433200 000111111234556666665
Q ss_pred HHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 96 EVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
.+. +++. .+..|+ +.+.|.+++++.+++.|+-...
T Consensus 65 ~~~----gi~L--~v~~~~-~~~~l~~~~~~~~~~~v~~n~~ 99 (461)
T COG0415 65 AEL----GIPL--LVREGD-PEQVLPELAKQLAATTVFWNRD 99 (461)
T ss_pred HHc----CCce--EEEeCC-HHHHHHHHHHHhCcceEEeeee
Confidence 554 4555 677888 9999999999999888887764
No 97
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=49.05 E-value=1.4e+02 Score=24.18 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=20.9
Q ss_pred EecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 110 HTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 110 ~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
-+.|. +...-+..+.+.++|.+|+|+-
T Consensus 183 eVDGG-I~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 183 SIDGS-MTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred EEECC-CCHHHHHHHHHCCCCEEEEChh
Confidence 45677 6666677777889999999974
No 98
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=48.94 E-value=59 Score=22.91 Aligned_cols=70 Identities=10% Similarity=-0.007 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHH
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYL 166 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~v 166 (200)
+.++.++.+++.+ +++++. ... ...+-+.....++|+|++|.+- ++.. .-.+++
T Consensus 17 la~k~k~~~~e~g----i~~~i~--a~~--~~e~~~~~~~~~~DvIll~PQi---~~~~---------------~~i~~~ 70 (104)
T PRK09590 17 MAKKTTEYLKEQG----KDIEVD--AIT--ATEGEKAIAAAEYDLYLVSPQT---KMYF---------------KQFEEA 70 (104)
T ss_pred HHHHHHHHHHHCC----CceEEE--Eec--HHHHHHhhccCCCCEEEEChHH---HHHH---------------HHHHHH
Confidence 4555666666554 444322 222 3334455555678999999764 1112 244566
Q ss_pred HcCCCccEEEEecCCC
Q 045490 167 IQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 167 l~~s~~pVLvv~~~~~ 182 (200)
+....+||.++.....
T Consensus 71 ~~~~~ipv~~I~~~~Y 86 (104)
T PRK09590 71 GAKVGKPVVQIPPQAY 86 (104)
T ss_pred hhhcCCCEEEeCHHHc
Confidence 7777999999976544
No 99
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=48.71 E-value=27 Score=28.75 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 118 AIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 118 ~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
+...+..++.++|++|+-+.+ ....|. .-+..++....+|++|+.+-
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN---~~~PGP-------------~~ARE~l~~~~iP~IvI~D~ 95 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPN---AAAPGP-------------TKAREMLSAKGIPCIVISDA 95 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S----TTSHHH-------------HHHHHHHHHSSS-EEEEEEG
T ss_pred HHHHHHHHhhCCCEEEEECCC---CCCCCc-------------HHHHHHHHhCCCCEEEEcCC
Confidence 444555578999999998865 112343 56888999999999999653
No 100
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=48.63 E-value=66 Score=28.32 Aligned_cols=37 Identities=3% Similarity=0.047 Sum_probs=29.1
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
..++|+|++.+|-.+.+++..+..+ .+.++++.++--
T Consensus 3 ~~k~ill~v~gsiaayk~~~l~r~L-~~~ga~v~vvmt 39 (392)
T COG0452 3 EGKRILLGVTGSIAAYKSVELVRLL-RRSGAEVRVVMT 39 (392)
T ss_pred CCceEEEEecCchhhhhHHHHHHHH-hhCCCeeEEEcc
Confidence 3569999999999999998776666 567888777544
No 101
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=48.41 E-value=28 Score=25.55 Aligned_cols=48 Identities=13% Similarity=-0.037 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecC----CCCC---cccccccccCCCccCCCCcChHHHHHcCCCccEEEEe
Q 045490 116 KAAIILSQSTAHGVDLLIIGQR----RSLS---NAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQ 178 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~----~~~~---~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~ 178 (200)
..+.|.+.+++++++.||+|-. |..+ .... ..++.+-++.++||..+.
T Consensus 36 ~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~---------------~f~~~L~~~~~~~v~~~D 90 (130)
T TIGR00250 36 DWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQ---------------KFANRLEGRFGVPVVLWD 90 (130)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHH---------------HHHHHHHHHhCCCEEEEc
Confidence 5788999999999999999942 1111 1111 355666666789998884
No 102
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=48.23 E-value=47 Score=23.49 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcC-CCccEEEEecCC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQN-SKCNCVGVQRKG 181 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~-s~~pVLvv~~~~ 181 (200)
++....+.+++.++..||+-+++ | .++..+.+. -+||++++-+..
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s-------G--------------~ta~~isk~RP~~pIiavt~~~ 49 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES-------G--------------RTARLISKYRPKVPIIAVTPNE 49 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS-------S--------------HHHHHHHHT-TSSEEEEEESSH
T ss_pred HHHHHHHHHHhcCCCEEEEECCC-------c--------------hHHHHHHhhCCCCeEEEEcCcH
Confidence 56778889999999999998876 3 688888886 579999996543
No 103
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=48.11 E-value=47 Score=24.53 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHcCCCEEEEecC----C---CCCcccccccccCCCccCCCCcChHHHHHcCC-CccEEEEecC
Q 045490 115 NKAAIILSQSTAHGVDLLIIGQR----R---SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNS-KCNCVGVQRK 180 (200)
Q Consensus 115 ~~~~~I~~~a~~~~~dllVmG~~----~---~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s-~~pVLvv~~~ 180 (200)
...+.|.+.+++++++.||+|-. | ...+... ..++.+-.+. ++||..+.-.
T Consensus 38 ~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~---------------~f~~~L~~~~~~ipV~~~DEr 96 (135)
T PF03652_consen 38 KDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVR---------------KFAEELKKRFPGIPVILVDER 96 (135)
T ss_dssp CCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHH---------------HHHHHHHHHH-TSEEEEEECS
T ss_pred hHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHH---------------HHHHHHHHhcCCCcEEEECCC
Confidence 37999999999999999999962 2 1122222 3556677776 9999999543
No 104
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=47.98 E-value=64 Score=24.15 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCC-CccEEEEec
Q 045490 117 AAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNS-KCNCVGVQR 179 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s-~~pVLvv~~ 179 (200)
...+.++++++++|-||+=.|.. +|.++|+..|=-.+-+++-. .|+|-+|.+
T Consensus 50 q~~f~kl~~dy~Vd~VvIk~R~~-----------KGKfAGga~~FKmEaaIQL~~~~~V~lvs~ 102 (138)
T PF11215_consen 50 QFTFAKLMEDYKVDKVVIKERAT-----------KGKFAGGAVGFKMEAAIQLIDDVEVELVSP 102 (138)
T ss_pred HHHHHHHHHHcCCCEEEEEeccc-----------CCCccCCchhHHHHHHHHhcCCCcEEEECH
Confidence 44566778889999999987641 13344544444556666654 899999843
No 105
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=47.81 E-value=47 Score=22.87 Aligned_cols=68 Identities=10% Similarity=0.073 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHH
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYL 166 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~v 166 (200)
+..++++.+++.+ +++++... . . ..+.+.. .++|+|++|.+- +..+ ...++.
T Consensus 19 l~~k~~~~~~~~g----i~~~v~a~--~-~-~~~~~~~--~~~Dvill~pqi---~~~~---------------~~i~~~ 70 (95)
T TIGR00853 19 LVNKMNKAAEEYG----VPVKIAAG--S-Y-GAAGEKL--DDADVVLLAPQV---AYML---------------PDLKKE 70 (95)
T ss_pred HHHHHHHHHHHCC----CcEEEEEe--c-H-HHHHhhc--CCCCEEEECchH---HHHH---------------HHHHHH
Confidence 4566666666654 54432222 2 2 2233333 357999999764 1112 244556
Q ss_pred HcCCCccEEEEecCCC
Q 045490 167 IQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 167 l~~s~~pVLvv~~~~~ 182 (200)
+...++||.++.....
T Consensus 71 ~~~~~ipv~~I~~~~Y 86 (95)
T TIGR00853 71 TDKKGIPVEVINGAQY 86 (95)
T ss_pred hhhcCCCEEEeChhhc
Confidence 7778899999987655
No 106
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=47.52 E-value=96 Score=28.79 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEEEecCCcH---HHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKVHTESGNK---AAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~---~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
+...++++...+++.+ ++++..+..-+.- ...+++.+++.+++.+|.++.. .+
T Consensus 422 d~~~~~~~~~~l~~~g----~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~------~~-------------- 477 (577)
T PLN02948 422 DLPTMKDAAEILDSFG----VPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGG------AA-------------- 477 (577)
T ss_pred hHHHHHHHHHHHHHcC----CCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCc------cc--------------
Confidence 3467778888877764 6666666654433 3444555666788988887755 11
Q ss_pred ChHHHHHcCCCccEEEEecCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~ 181 (200)
..+.-+.-.+.+||+-|+...
T Consensus 478 ~l~~~~a~~t~~pvi~vp~~~ 498 (577)
T PLN02948 478 HLPGMVASMTPLPVIGVPVKT 498 (577)
T ss_pred cchHHHhhccCCCEEEcCCCC
Confidence 344456677889999887653
No 107
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=46.91 E-value=21 Score=27.00 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=9.0
Q ss_pred HHHHHHHHHHcCCCEEEEec
Q 045490 117 AAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~ 136 (200)
.+.|.++++++++|+|++|.
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g 71 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGG 71 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--
T ss_pred HHHHHHHHHHcCCeEEEEcC
Confidence 44455555556666666643
No 108
>PRK02929 L-arabinose isomerase; Provisional
Probab=46.88 E-value=2.1e+02 Score=26.15 Aligned_cols=48 Identities=4% Similarity=-0.144 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcC----CCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 117 AAIILSQSTAHG----VDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 117 ~~~I~~~a~~~~----~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
.+.|.+.+++.+ +|.||+--+. ++. ++..-.+++..++|||+...+..
T Consensus 57 ~~~i~~~~~~~~~~~~~dgvi~~m~T------Fs~------------a~~~i~~~~~l~~PvL~~~~Q~~ 108 (499)
T PRK02929 57 PDEITAVCREANYDDNCAGVITWMHT------FSP------------AKMWIRGLSALQKPLLHLHTQFN 108 (499)
T ss_pred HHHHHHHHHHccccCCCcEEEEccCC------Cch------------HHHHHHHHHHcCCCEEEEecCCC
Confidence 555666666666 9999998876 321 14556678889999999987433
No 109
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=45.13 E-value=1.9e+02 Score=26.05 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=53.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|+.-....||..|+..+ +..|..++|.++..+. .+ ........-.-+.+..+.+.+
T Consensus 11 DLRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~--------~~-------------~~~~~r~~Fl~esL~~L~~~L 66 (472)
T PRK10674 11 DLRLHDNLALAAACRDP---SARVLALFIATPAQWA--------AH-------------DMAPRQAAFINAQLNALQIAL 66 (472)
T ss_pred CCCcchHHHHHHHHhCC---CCCEEEEEEECchhhc--------cC-------------CCCHHHHHHHHHHHHHHHHHH
Confidence 55555667887776543 2369999997654210 00 000000111235555666665
Q ss_pred HHhCCCcceEEEEEEec----CCcHHHHHHHHHHHcCCCEEEEec
Q 045490 96 EVAKPKLRVHVEKVHTE----SGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~----g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
++.+ ++. .+.. |+ +.+.|.+.+++.+++-|+.-.
T Consensus 67 ~~~g----~~L--~v~~g~~~g~-~~~vl~~l~~~~~i~~v~~~~ 104 (472)
T PRK10674 67 AEKG----IPL--LFHEVDDFAA-SVEWLKQFCQQHQVTHLFYNY 104 (472)
T ss_pred HHcC----Cce--EEEecCCcCC-HHHHHHHHHHHcCCCEEEEec
Confidence 5543 444 3444 45 999999999999999999875
No 110
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=44.80 E-value=91 Score=26.54 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCC-cHHHHHHHHHHHcCCCEEE-EecCCCCCcccccccccCCCccCCCCcChHH
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESG-NKAAIILSQSTAHGVDLLI-IGQRRSLSNAILGYRRAGGSLRGSKGVDTAE 164 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~-~~~~~I~~~a~~~~~dllV-mG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~ 164 (200)
..+++.+.+++.+ . +.+- ...++. +..+.+.+.+++.++|.|| +|... .. +++.
T Consensus 40 ~~~~v~~~l~~~~-~--~~~~-~~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs------~~--------------D~aK 95 (339)
T cd08173 40 AGKKVEALLEDEG-E--VDVV-IVEDATYEEVEKVESSARDIGADFVIGVGGGR------VI--------------DVAK 95 (339)
T ss_pred HHHHHHHHHHhcC-C--eEEE-EeCCCCHHHHHHHHHHhhhcCCCEEEEeCCch------HH--------------HHHH
Confidence 4555566655443 2 3221 222222 2456677777888899888 66544 22 5666
Q ss_pred HHHcCCCccEEEEecCC
Q 045490 165 YLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 165 ~vl~~s~~pVLvv~~~~ 181 (200)
.+.-...+|++.|+-..
T Consensus 96 ~~a~~~~~p~i~iPTT~ 112 (339)
T cd08173 96 VAAYKLGIPFISVPTAA 112 (339)
T ss_pred HHHHhcCCCEEEecCcc
Confidence 66666788998887553
No 111
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=44.25 E-value=46 Score=27.98 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=29.4
Q ss_pred cceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 102 LRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 102 ~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+++++.-..+....-.+.|.+..+++.+|.||+-.|.
T Consensus 128 l~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 128 LGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred cCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 4677766655555588999999999999999997764
No 112
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=44.14 E-value=88 Score=25.90 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.+..+++.+.+++..|.+.+-...+=.....-.+.|++.+...++|+|.+|-..
T Consensus 118 p~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~VgmG~ 171 (253)
T COG1922 118 PGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLVGMGV 171 (253)
T ss_pred HHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEEeCCC
Confidence 467778888888777764433321111112123579999999999999999654
No 113
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=43.64 E-value=2e+02 Score=24.21 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=51.4
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHH
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGED 86 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
..+||.|-+.++..+..+|-++...- ..+++|.++-... . .
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~~-~l~~~i~~visn~-----------------------------~---------~ 132 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRMG-ELDMDIVGIISNH-----------------------------P---------D 132 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHCC-CCCcEEEEEEECC-----------------------------h---------h
Confidence 35688888888888888887775543 3566776655510 0 1
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEec-CC--cHHHHHHHHHHHcCCCEEEEec
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTE-SG--NKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~-g~--~~~~~I~~~a~~~~~dllVmG~ 136 (200)
. .+++++. ++++...-.. .+ +....+++..+++++|++|+..
T Consensus 133 ~----~~~A~~~----gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlag 177 (289)
T PRK13010 133 L----QPLAVQH----DIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLAR 177 (289)
T ss_pred H----HHHHHHc----CCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEeh
Confidence 1 2333333 4666322111 11 1356788999999999999985
No 114
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.09 E-value=51 Score=24.22 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=26.5
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+++| +..-.+...+.+++.+.+.++|.|+|.+..
T Consensus 30 GfeV--i~lg~~~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 30 GFDV--DVGPLFQTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred CcEE--EECCCCCCHHHHHHHHHHcCCCEEEEcCch
Confidence 5666 444445578899999999999999998854
No 115
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.02 E-value=59 Score=22.74 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHH
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEY 165 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~ 165 (200)
-..++.++.+++.+ +++++.-. . ...+.+.. .++|+|++|..- +..+ +..++
T Consensus 15 ~la~km~~~a~~~g----i~~~i~a~--~--~~e~~~~~--~~~Dvill~PQv---~~~~---------------~~i~~ 66 (99)
T cd05565 15 LLANALNKGAKERG----VPLEAAAG--A--YGSHYDMI--PDYDLVILAPQM---ASYY---------------DELKK 66 (99)
T ss_pred HHHHHHHHHHHHCC----CcEEEEEe--e--HHHHHHhc--cCCCEEEEcChH---HHHH---------------HHHHH
Confidence 35566777777654 55543322 2 33344444 467999999865 2223 24556
Q ss_pred HHcCCCccEEEEecC
Q 045490 166 LIQNSKCNCVGVQRK 180 (200)
Q Consensus 166 vl~~s~~pVLvv~~~ 180 (200)
.+....+||.++...
T Consensus 67 ~~~~~~ipv~~I~~~ 81 (99)
T cd05565 67 DTDRLGIKLVTTTGK 81 (99)
T ss_pred HhhhcCCCEEEeCHH
Confidence 777778999998644
No 116
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=43.00 E-value=93 Score=26.20 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 83 GGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
...+.+.++++.+++.+ .+++.+..+...-+..+++.+...++|+||.+...
T Consensus 17 ~~~~~~~~~~~~l~~~g----~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGD 68 (301)
T COG1597 17 KAKKLLREVEELLEEAG----HELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGD 68 (301)
T ss_pred chhhHHHHHHHHHHhcC----CeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCc
Confidence 34567777777777665 44444544433246667777777799999997643
No 117
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=42.27 E-value=1.6e+02 Score=25.60 Aligned_cols=55 Identities=7% Similarity=0.056 Sum_probs=37.5
Q ss_pred EecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 110 HTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 110 ~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
+....| ...-++.+++.++|.|.|.---..- -|- .+.+.+++..++||+++....
T Consensus 30 v~~a~n-g~~a~~~~~~~~PDVi~ld~emp~m---dgl-------------~~l~~im~~~p~pVimvsslt 84 (350)
T COG2201 30 VGTARN-GREAIDKVKKLKPDVITLDVEMPVM---DGL-------------EALRKIMRLRPLPVIMVSSLT 84 (350)
T ss_pred EEecCC-HHHHHHHHHhcCCCEEEEecccccc---cHH-------------HHHHHHhcCCCCcEEEEeccc
Confidence 344443 4445677888999999998643111 111 477889999999999996543
No 118
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=41.87 E-value=2.1e+02 Score=23.91 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=55.3
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHH
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFL 88 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (200)
.+++|++.+.-+|...+..|.+. .|..+.++.|..|.. | +..+
T Consensus 18 ~kv~vAfSGGvDSslLa~la~~~---lG~~v~AvTv~sP~~-----------p-----------------------~~e~ 60 (269)
T COG1606 18 KKVVVAFSGGVDSSLLAKLAKEA---LGDNVVAVTVDSPYI-----------P-----------------------RREI 60 (269)
T ss_pred CeEEEEecCCccHHHHHHHHHHH---hccceEEEEEecCCC-----------C-----------------------hhhh
Confidence 49999999998888766665444 347888888853221 1 1233
Q ss_pred HHHHHHHHHhCCCcceEEE--------------EEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 89 EEMKQACEVAKPKLRVHVE--------------KVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~v~v~--------------~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+.+...+++.+-++.+.-. +-...- .+.+.|.+.+.+.++|.|+=|+..
T Consensus 61 e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~-~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 61 EEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKR-AVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred hHHHHHHHHhCCcceeeehhhcchhhccCCCCcchHHHH-HHHHHHHHHHHHcCCCEEEeCCcH
Confidence 4444444444422211100 001112 267899999999999999999853
No 119
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=41.79 E-value=63 Score=21.00 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=26.0
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEE
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVL 41 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~l 41 (200)
.++|.+++|..+....+.+.........+-.+.+
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~ 76 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRV 76 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4899999999988888887777776666655543
No 120
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=41.62 E-value=1.9e+02 Score=23.44 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=26.8
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
++++|++.+.-+|..++.||.+- +.+++.+++.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~----~~~v~alt~d 34 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ----YDEVHCVTFD 34 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc----CCeEEEEEEE
Confidence 57999999999999999888542 3478888885
No 121
>PRK00074 guaA GMP synthase; Reviewed
Probab=41.41 E-value=2.8e+02 Score=25.31 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=27.9
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.++++|++.+.-+|..++..+... .+.+++.+|+.
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~---lg~~v~av~vd 249 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKA---IGDQLTCVFVD 249 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHH---hCCceEEEEEe
Confidence 479999999999998877766553 25679999994
No 122
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=41.32 E-value=97 Score=21.93 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=28.8
Q ss_pred CCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 128 GVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 128 ~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
++|.+.+|..- ++.++ ..++++....+||-++...+.
T Consensus 48 ~~DvvLlGPQv---~y~~~---------------~~~~~~~~~giPV~vI~~~dY 84 (102)
T COG1440 48 NADVVLLGPQV---RYMLK---------------QLKEAAEEKGIPVEVIDMLDY 84 (102)
T ss_pred cCCEEEEChHH---HHHHH---------------HHHHHhcccCCCeEEeCHHHc
Confidence 68999999865 34443 678889999999999976554
No 123
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=40.97 E-value=2e+02 Score=23.60 Aligned_cols=120 Identities=11% Similarity=0.044 Sum_probs=62.2
Q ss_pred EEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccccccc----chHH
Q 045490 11 VMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAP----GGED 86 (200)
Q Consensus 11 IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 86 (200)
.-+|-.+--.....++.++.+|++.+-.|- .|..-|+ ...+ + -.......+ ....
T Consensus 30 aNIACG~HAGDp~~M~~tv~lA~~~gV~iG-AHPsyPD--------------~~gF---G---Rr~m~~s~~el~~~v~y 88 (242)
T PF03746_consen 30 ANIACGFHAGDPETMRRTVRLAKEHGVAIG-AHPSYPD--------------REGF---G---RRSMDISPEELRDSVLY 88 (242)
T ss_dssp EEEE-SSSS--HHHHHHHHHHHHHTT-EEE-EE---S---------------TTTT---T----S-----HHHHHHHHHH
T ss_pred HHHhhcccccCHHHHHHHHHHHHHcCCEec-cCCCCCC--------------CCCC---C---CCCCCCCHHHHHHHHHH
Confidence 345555555666778888888888876554 3553222 1111 0 111111111 2234
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEec---------CCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCC
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTE---------SGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGS 157 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~---------g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~ 157 (200)
.+..+...++..+ .++..+--. ....++.|++.++..+++|.++|..+
T Consensus 89 QigaL~~~a~~~g----~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ag------------------- 145 (242)
T PF03746_consen 89 QIGALQAIAAAEG----VPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLAG------------------- 145 (242)
T ss_dssp HHHHHHHHHHHTT------EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETT-------------------
T ss_pred HHHHHHHHHHHcC----CeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcCC-------------------
Confidence 4555666666654 444323222 22368999999999999999999876
Q ss_pred CCcChHHHHHcCCCccEEEE
Q 045490 158 KGVDTAEYLIQNSKCNCVGV 177 (200)
Q Consensus 158 ~~~s~~~~vl~~s~~pVLvv 177 (200)
|...+..++...+++-=
T Consensus 146 ---s~~~~~A~~~Gl~~~~E 162 (242)
T PF03746_consen 146 ---SELEKAAKELGLPVVFE 162 (242)
T ss_dssp ---SHHHHHHHHCT--EEEE
T ss_pred ---cHHHHHHHHCCCcEEEE
Confidence 67788888888887653
No 124
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=40.78 E-value=22 Score=23.59 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=18.0
Q ss_pred hHHHHHcCCCccEEEEecCCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~~ 182 (200)
..++++++++-||.+-|.+.+
T Consensus 31 aVdK~vkna~ePvyi~R~~~P 51 (79)
T PF10808_consen 31 AVDKIVKNAQEPVYIYRAKNP 51 (79)
T ss_pred chHHHhcCCCCcEEEEecCCc
Confidence 568899999999999987655
No 125
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.47 E-value=1.2e+02 Score=21.52 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=26.7
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++++ +..-.+.+.+.+++.+.+.++|.|++....
T Consensus 27 G~~v--i~lG~~vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 27 GFEV--IYTGLRQTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred CCEE--EECCCCCCHHHHHHHHHHcCCCEEEEcccc
Confidence 4555 444445689999999999999999998754
No 126
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=40.35 E-value=2.5e+02 Score=24.44 Aligned_cols=134 Identities=17% Similarity=0.133 Sum_probs=67.4
Q ss_pred CeEEEEECCCc-c-hHHHHHHHHHhcCC---CCCeEE-EEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccccccc
Q 045490 9 RKVMVIADPTR-E-SAGALQYALSHVLL---EEDELV-LLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAP 82 (200)
Q Consensus 9 ~~IlVavD~s~-~-s~~al~~A~~la~~---~~a~l~-llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (200)
.+.+|-+.+-. + ...++++|..+... ..+++. ++-++-. .| .+...|-+..........-
T Consensus 52 ~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~------------KP--RTs~g~kGl~~DP~ldgs~ 117 (349)
T PRK09261 52 DRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFE------------KP--RTTVGWKGLINDPDLDGSF 117 (349)
T ss_pred CCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccc------------cC--CCCCCCcCCCcCcCccccc
Confidence 56677776433 3 45678888776543 233333 4444311 11 1112222221222222222
Q ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcCh
Q 045490 83 GGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDT 162 (200)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~ 162 (200)
..++-+.-+++.+.+ ..+.++++-+++..-. -.+.+.+ + +|++-+|+|...++ .
T Consensus 118 ~i~~GL~~~R~ll~~-~~e~GlpvatE~ld~~-~~~y~~d----l-vs~~~IGARt~esq-------------------~ 171 (349)
T PRK09261 118 DINDGLRIARKLLLD-INELGLPAATEFLDPI-TPQYIAD----L-ISWGAIGARTTESQ-------------------V 171 (349)
T ss_pred cHHHHHHHHHHHHHH-HHHhCCCeEEEecccc-cHHHHHh----h-cceeeeccchhcCH-------------------H
Confidence 334455555554322 1223688877777655 3344433 3 79999999872221 2
Q ss_pred HHHHHcCCCccEEEEecCCC
Q 045490 163 AEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 163 ~~~vl~~s~~pVLvv~~~~~ 182 (200)
-.+.+...++||.+=+..+-
T Consensus 172 hr~~asg~~~PVg~Kng~~g 191 (349)
T PRK09261 172 HRELASGLSCPVGFKNGTDG 191 (349)
T ss_pred HHHHhcCCCCeeEecCCCCC
Confidence 23456678899988655443
No 127
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=40.31 E-value=61 Score=27.18 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=27.7
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++++.-..+....-.+.|....+++.+|.||+-.|.
T Consensus 128 ~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 128 GVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred CCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 566655545444478999999999999999997765
No 128
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=40.19 E-value=2.4e+02 Score=24.23 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=24.1
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+|+|++.+.-+|..++..+.+ .+.+++.+|+.
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~ 32 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMK 32 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEe
Confidence 589999999999877655543 35578888884
No 129
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=39.96 E-value=56 Score=23.54 Aligned_cols=35 Identities=6% Similarity=-0.069 Sum_probs=26.0
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
|||++++-++....++.++...+.+. +.+|.++--
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVLS 35 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEES
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEEC
Confidence 68999999999998888888777665 667665444
No 130
>PRK05406 LamB/YcsF family protein; Provisional
Probab=39.55 E-value=2.2e+02 Score=23.51 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecC---------CcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccC
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTES---------GNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRG 156 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g---------~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~ 156 (200)
..+..+...|+..+ .++..+--.| ...++.|++.++..+.+|++++..+
T Consensus 90 yQigAL~~~a~~~g----~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~------------------ 147 (246)
T PRK05406 90 YQIGALQAIARAAG----GRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAG------------------ 147 (246)
T ss_pred HHHHHHHHHHHHcC----CeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC------------------
Confidence 44555666666554 4443332222 3478999999999999999999776
Q ss_pred CCCcChHHHHHcCCCccEEE
Q 045490 157 SKGVDTAEYLIQNSKCNCVG 176 (200)
Q Consensus 157 ~~~~s~~~~vl~~s~~pVLv 176 (200)
|...++.++...+++.
T Consensus 148 ----s~~~~~A~~~Gl~~~~ 163 (246)
T PRK05406 148 ----SELIRAAEEAGLRTAS 163 (246)
T ss_pred ----hHHHHHHHHcCCcEEE
Confidence 6777888888888764
No 131
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=39.50 E-value=50 Score=25.90 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=28.7
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
+||++++-+|-.+.++.+.+..+.+..+.+|.++--
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T 37 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVIS 37 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEEC
Confidence 689999999999999999988886545667665443
No 132
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=39.28 E-value=1.5e+02 Score=21.63 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=24.7
Q ss_pred eEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 10 KVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.++|++.+..+|..++.++.... +-++.++|+.
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~ 35 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLNPLAVTVD 35 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCceEEEEeC
Confidence 68999999999998887776542 2267777873
No 133
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=39.08 E-value=44 Score=28.48 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCC---C-CCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 115 NKAAIILSQSTAHGVDLLIIGQRR---S-LSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 115 ~~~~~I~~~a~~~~~dllVmG~~~---~-~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
.+....++++.+ +|+||+|-.+ + +...... .+. +.+++++||++.|.+-
T Consensus 163 ~~~~~~l~AI~~--ADlIvlgPGSlyTSI~P~Llv~--------------gi~-eAi~~s~a~kV~V~ni 215 (309)
T cd07044 163 SPSREVLEAIEK--ADNIVIGPGSLYTSILPNISVP--------------GIR-EALKKTXAKKVYVSNI 215 (309)
T ss_pred CCCHHHHHHHHh--CCEEEECCCcCHHHhhhhcCcH--------------hHH-HHHHhcCCCeEEECCC
Confidence 367778888755 7999999866 2 2333332 354 4666789999999654
No 134
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=38.72 E-value=87 Score=26.65 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCC---CCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEec
Q 045490 115 NKAAIILSQSTAHGVDLLIIGQRR---SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQR 179 (200)
Q Consensus 115 ~~~~~I~~~a~~~~~dllVmG~~~---~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~ 179 (200)
.+..+.++++.+ +|+||+|-.+ ++-..+.= .--.+.+++++.||+.|-+
T Consensus 172 ~~~p~vl~AI~~--AD~IVlGPgsp~TSI~P~LlV--------------pgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 172 RPAPEVLEAIED--ADLVIIGPSNPVTSIGPILAL--------------PGIREALRDKKAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHHhhhhccc--------------hhHHHHHHhCCCCEEEEcC
Confidence 367788888755 7999999866 33222221 2234577888999999854
No 135
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=38.44 E-value=1.6e+02 Score=25.07 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCEEE-EecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 117 AAIILSQSTAHGVDLLI-IGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllV-mG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
.+.+.+.+++.++|.|| +|..+ .- ++++.+.....+|++.|+-..
T Consensus 67 v~~~~~~~~~~~~d~iiavGGGs------~~--------------D~aK~ia~~~~~p~i~VPTt~ 112 (345)
T cd08171 67 VERLKKNPAVQEADMIFAVGGGK------AI--------------DTVKVLADKLGKPVFTFPTIA 112 (345)
T ss_pred HHHHHHHHhhcCCCEEEEeCCcH------HH--------------HHHHHHHHHcCCCEEEecCcc
Confidence 45667777888999998 66544 11 455555555678999997543
No 136
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=38.35 E-value=2.1e+02 Score=23.06 Aligned_cols=22 Identities=36% Similarity=0.300 Sum_probs=18.8
Q ss_pred eEEEEECCCcchHHHHHHHHHh
Q 045490 10 KVMVIADPTRESAGALQYALSH 31 (200)
Q Consensus 10 ~IlVavD~s~~s~~al~~A~~l 31 (200)
++++.+.+.++|..|+-++...
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~ 23 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE 23 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc
Confidence 6788899999999999888763
No 137
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=37.96 E-value=41 Score=22.05 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=21.5
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEE
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELV 40 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~ 40 (200)
.++|++++|...+...+.....+.+...+-+++
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~ 78 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVT 78 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG-------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhccccc
Confidence 589999999999988888888875555554544
No 138
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=37.37 E-value=2.7e+02 Score=23.96 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCCCEEE
Q 045490 117 AAIILSQSTAHGVDLLI 133 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllV 133 (200)
.+.+.+.+++.++|.||
T Consensus 73 v~~~~~~~~~~~~d~II 89 (366)
T PRK09423 73 IDRLVAIAEENGCDVVI 89 (366)
T ss_pred HHHHHHHHHhcCCCEEE
Confidence 44555556666777666
No 139
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=37.35 E-value=57 Score=28.38 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=35.2
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCC-CeEEEEEee
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEE-DELVLLHVD 45 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~-a~l~llhV~ 45 (200)
..+.+|.|...+.++|...|..+++.++..+ ++|.++|..
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 3578999999999999999999999999877 589999885
No 140
>PRK11914 diacylglycerol kinase; Reviewed
Probab=37.16 E-value=2.1e+02 Score=23.77 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEec
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
+..+++.+.+++.+ ++++....+...-++.+++.+.+.++|+||+..
T Consensus 26 ~~~~~~~~~l~~~g----~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~G 72 (306)
T PRK11914 26 HAAERAIARLHHRG----VDVVEIVGTDAHDARHLVAAALAKGTDALVVVG 72 (306)
T ss_pred HHHHHHHHHHHHcC----CeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEEC
Confidence 44455555555443 444333333222356666666667788777644
No 141
>PRK05920 aromatic acid decarboxylase; Validated
Probab=36.79 E-value=66 Score=25.66 Aligned_cols=37 Identities=5% Similarity=0.085 Sum_probs=28.5
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
+.+||++++-++-.+.++++..-.+.+ .+.+|+++--
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~-~g~~V~vi~T 38 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLA-ADYEVHLVIS 38 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 568999999999999888888777755 4666665443
No 142
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=36.79 E-value=59 Score=28.20 Aligned_cols=13 Identities=8% Similarity=0.235 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 045490 85 EDFLEEMKQACEV 97 (200)
Q Consensus 85 ~~~l~~~~~~~~~ 97 (200)
.+.+.++.+.+.+
T Consensus 26 ~~~f~~~l~~a~~ 38 (390)
T COG0420 26 KKAFDELLEIAKE 38 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 143
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=36.70 E-value=1.4e+02 Score=20.60 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 88 LEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 88 l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
+..+...+++. +.++. ........+.+.+.+++.++|+|.++..
T Consensus 17 l~~la~~l~~~----G~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 17 LLYLAAYLRKA----GHEVD--ILDANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHHHHT----TBEEE--EEESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHC----CCeEE--EECCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 44444455544 35553 4444434689999999999999999873
No 144
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=36.56 E-value=1.5e+02 Score=25.09 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=35.3
Q ss_pred eEEEEEEecCCcH----HHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEec
Q 045490 104 VHVEKVHTESGNK----AAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQR 179 (200)
Q Consensus 104 v~v~~~~~~g~~~----~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~ 179 (200)
+++.+.+..|.+. ...+++.+++.++|.|.+..+.. .....|. ..+ ....++.++.++||+....
T Consensus 134 ~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~-~~~~~G~----a~~------~~i~~ik~~~~iPVI~nGg 202 (321)
T PRK10415 134 VPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR-ACLFNGE----AEY------DSIRAVKQKVSIPVIANGD 202 (321)
T ss_pred CceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCcc-ccccCCC----cCh------HHHHHHHHhcCCcEEEeCC
Confidence 4444455444422 34677777889999998865430 1111110 001 3445666667777777643
No 145
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=36.54 E-value=3e+02 Score=24.32 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 117 AAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
...+.+.+++.++|+++=+++. .++.++..+|.+.+..+-
T Consensus 366 ~~e~~~~i~~~~pDliiG~s~~-------------------------~~~a~~~gip~v~~~~P~ 405 (435)
T cd01974 366 LWHLRSLLFTEPVDLLIGNTYG-------------------------KYIARDTDIPLVRFGFPI 405 (435)
T ss_pred HHHHHHHHhhcCCCEEEECccH-------------------------HHHHHHhCCCEEEeeCCc
Confidence 6667777888899996644433 457777888887776543
No 146
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=36.16 E-value=77 Score=23.32 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=24.9
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
+++| +-.--+.+.+.+++.|.++++|.|.+++-
T Consensus 27 GfeV--idLG~~v~~e~~v~aa~~~~adiVglS~L 59 (128)
T cd02072 27 GFNV--VNLGVLSPQEEFIDAAIETDADAILVSSL 59 (128)
T ss_pred CCEE--EECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 4665 33322347899999999999999999873
No 147
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=35.63 E-value=2.9e+02 Score=23.84 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=26.0
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
++|+|++.+..+|..++..+.+ .+.+|+.+|+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEE
Confidence 4899999999999988766655 24589999883
No 148
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=35.13 E-value=74 Score=28.15 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=15.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 113 SGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 113 g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
|+|+...+- .+++.++.++.+.+.+
T Consensus 102 GdDi~~v~~-~~~~~~~~vi~v~t~g 126 (427)
T cd01971 102 GDDVGAVVS-EFQEGGAPIVYLETGG 126 (427)
T ss_pred hcCHHHHHH-HhhhcCCCEEEEECCC
Confidence 665444433 3466778888877655
No 149
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.87 E-value=48 Score=29.54 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-C-CCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQR-R-SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~-~-~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
+.+.|++.+++.++|++|.|-- . ..- |.+-|.++..|-++..||++.-=..
T Consensus 64 a~~~i~~mv~k~~pDv~iaGPaFNagrY--------------G~acg~va~aV~e~~~IP~vtaMy~ 116 (431)
T TIGR01917 64 AKAKVLEMIKGANPDIFIAGPAFNAGRY--------------GMAAGAITKAVQDELGIKAFTAMYE 116 (431)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccCCccH--------------HHHHHHHHHHHHHhhCCCeEEEecc
Confidence 3467999999999999999962 2 111 2233368888888899999876433
No 150
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=34.73 E-value=48 Score=29.51 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-C-CCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQR-R-SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~-~-~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
+.+.|++.+++.++|++|.|-- . ..- |.+-|.++..|-++..||++.-=..
T Consensus 64 a~~~i~~mv~k~~pDv~iaGPaFNagrY--------------G~acg~va~aV~e~~~IP~vt~My~ 116 (431)
T TIGR01918 64 AVARVLEMLKDKEPDIFIAGPAFNAGRY--------------GVACGEICKVVQDKLNVPAVTSMYV 116 (431)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccCCccH--------------HHHHHHHHHHHHHhhCCCeEEEecc
Confidence 3467999999999999999963 2 111 2233368888888899999876433
No 151
>PRK14057 epimerase; Provisional
Probab=33.60 E-value=2.8e+02 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=21.0
Q ss_pred EecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 110 HTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 110 ~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
-+.|. +...-+..+.+.++|.+|+|+-
T Consensus 197 eVDGG-I~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 197 VIDGS-LTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred EEECC-CCHHHHHHHHHCCCCEEEEChH
Confidence 45677 6666677777889999999963
No 152
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.53 E-value=1.3e+02 Score=22.23 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=25.5
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+++| +..--+.+.+.+++.|.++++|.|.+++..
T Consensus 29 GfeV--i~LG~~v~~e~~v~aa~~~~adiVglS~l~ 62 (134)
T TIGR01501 29 GFNV--VNLGVLSPQEEFIKAAIETKADAILVSSLY 62 (134)
T ss_pred CCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 4665 333233488999999999999999998853
No 153
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=32.78 E-value=76 Score=27.08 Aligned_cols=48 Identities=25% Similarity=0.285 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---C-CCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRR---S-LSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~---~-~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
+.+..+++++ ++|+||+|-.+ + +...+.. .+.+ .+++++||++.|-+-
T Consensus 162 a~~~al~AI~--~ADlIvlgPGSlyTSIiPnLlv~--------------gI~e-AI~~s~a~kV~v~N~ 213 (310)
T TIGR01826 162 ALREAVEAIR--EADLIILGPGSLYTSIIPNLLVP--------------EIAE-ALRESKAPKVYVCNL 213 (310)
T ss_pred CCHHHHHHHH--hCCEEEECCCcCHHHhchhcCch--------------hHHH-HHHhCCCCEEEEeCC
Confidence 6677777775 48999999765 2 2333333 3554 567789999999654
No 154
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.49 E-value=2.7e+02 Score=22.45 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=21.2
Q ss_pred EecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 110 HTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 110 ~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
-+.|. +...-+..+.+.++|.+|+|+.
T Consensus 175 eVDGG-I~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 175 EIDGG-VKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred EEECC-CCHHHHHHHHHcCCCEEEEChh
Confidence 45677 6766777777889999999974
No 155
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=32.41 E-value=2.9e+02 Score=24.73 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEe-cCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHT-ESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~-~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
+.+..+.+.+++.+ ... .+. .|. +.+.|.+.+++.+++-|..-..
T Consensus 51 ~sL~~L~~~L~~~G----~~L--~v~~~g~-~~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 51 QSLAHLDQSLRSLG----TCL--VTIRSTD-TVAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHHHHHHHcC----Cce--EEEeCCC-HHHHHHHHHHHcCCCEEEEecc
Confidence 45556666655543 444 333 356 9999999999999999987754
No 156
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=32.39 E-value=1.5e+02 Score=23.57 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 118 AIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 118 ~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
+.+++.+.+.+.|.|.+|.+......-.. .+.+.+=+..++||++.+....
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~gvt~~~~~--------------~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSLGIVESNLD--------------QTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcCCCCHHHHH--------------HHHHHHHhhcCCCEEEECCCcc
Confidence 34566777888999999855311111111 2334443347899999854443
No 157
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=32.18 E-value=2.6e+02 Score=22.23 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCEEEEec
Q 045490 117 AAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~ 136 (200)
.+.+++..+++++|++|+..
T Consensus 67 ~~~~~~~l~~~~~Dliv~ag 86 (207)
T PLN02331 67 PDELVDALRGAGVDFVLLAG 86 (207)
T ss_pred hHHHHHHHHhcCCCEEEEeC
Confidence 45778888999999999965
No 158
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=32.17 E-value=58 Score=27.56 Aligned_cols=49 Identities=24% Similarity=0.231 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCC---CCCc-ccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 115 NKAAIILSQSTAHGVDLLIIGQRR---SLSN-AILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 115 ~~~~~I~~~a~~~~~dllVmG~~~---~~~~-~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
.+.+..++++++ +|+||+|-.+ ++-- .... .+ .+.+++++||++.|-+-
T Consensus 172 ~~~p~~l~AI~~--AD~IiigPgs~~TSI~P~L~v~--------------gi-~~Ai~~s~a~kV~V~ni 224 (300)
T PF01933_consen 172 KANPEALEAIEE--ADLIIIGPGSLYTSIIPNLLVP--------------GI-REAIRESKAPKVYVSNI 224 (300)
T ss_dssp -B-HHHHHHHHH---SEEEE-SS-CCCCCHHHHTSH--------------HH-HHHHHHSSSEEEEE-SS
T ss_pred CCCHHHHHHHHh--CCEEEEcCCCchhhhcccccch--------------hH-HHHHHhCCCCEEEEcCC
Confidence 366778888765 7999999865 3322 2222 24 45677778999999654
No 159
>PRK14561 hypothetical protein; Provisional
Probab=32.00 E-value=2.5e+02 Score=21.90 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=22.4
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
.+|+|++.+..+|...+.++... ..+.++|+
T Consensus 1 mkV~ValSGG~DSslll~~l~~~-----~~v~a~t~ 31 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF-----YDVELVTV 31 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc-----CCeEEEEE
Confidence 36999999999998777655332 34667777
No 160
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=31.68 E-value=2.5e+02 Score=22.62 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCC----cHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcC
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESG----NKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~----~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
..+..+++.+++.| .+|..+-.... +..+.|.+.+++++++-|++-.-+. ..+- .
T Consensus 49 saMRhfa~~L~~~G----~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d---~~l~--------------~ 107 (224)
T PF04244_consen 49 SAMRHFADELRAKG----FRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGD---YRLE--------------Q 107 (224)
T ss_dssp HHHHHHHHHHHHTT------EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S----HHHH--------------H
T ss_pred HHHHHHHHHHHhCC----CEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCC---HHHH--------------H
Confidence 45666666666654 55654544411 3689999999999999999987651 1121 2
Q ss_pred hHHHHHcCCCccEEEEecCCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~~ 182 (200)
..+.++...+||+-++..+.+
T Consensus 108 ~l~~~~~~~~i~~~~~~~~~F 128 (224)
T PF04244_consen 108 RLESLAQQLGIPLEVLEDPHF 128 (224)
T ss_dssp HHHH----SSS-EEEE--TTS
T ss_pred HHHhhhcccCCceEEeCCCCc
Confidence 445577788999999987765
No 161
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=31.67 E-value=71 Score=25.14 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=36.3
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHH---cCCCEEEEecCC-CCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEe
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTA---HGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQ 178 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~---~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~ 178 (200)
++-.....+.|.|.-+.|++.++. .++++|++..=. ++.+++- .+.+-+.+.+||++|-
T Consensus 36 Gv~~~~itvdG~DaT~~i~~m~~~~~r~~i~~v~LdGit~agFNiiD-----------------~~~l~~~tg~PVI~V~ 98 (187)
T PF01949_consen 36 GVAFGRITVDGMDATEAIIEMVKRLFRPDIRVVMLDGITFAGFNIID-----------------IERLYEETGLPVIVVM 98 (187)
T ss_dssp EEEEEEE-TT-S-HHHHHHHHHCCTTTTTEEEEEESSSEETTTEE-------------------HHHHHHHH---EEEEE
T ss_pred EEEEEEEEECCchHHHHHHHHHHhcccCcceEEEECCEeEEeeEEec-----------------HHHHHHHHCCCEEEEE
Confidence 355666777899999999999975 235666665432 3333332 3678889999999996
Q ss_pred cCCCC
Q 045490 179 RKGQN 183 (200)
Q Consensus 179 ~~~~~ 183 (200)
.+..+
T Consensus 99 ~~~p~ 103 (187)
T PF01949_consen 99 RKEPN 103 (187)
T ss_dssp SS---
T ss_pred EeCCC
Confidence 55543
No 162
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=31.12 E-value=1e+02 Score=27.55 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
.+++|.+..++.++|-+||-++-..... .| ++..+-+.++.+||+.+-.--+
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtr-cg--------------a~m~keiE~~GIPvV~i~~~~p 375 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTR-CG--------------ATMVKEIERAGIPVVHICTVTP 375 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchh-HH--------------HHHHHHHHHcCCCEEEEeechh
Confidence 5788999999999999999876311111 23 5777888899999999954433
No 163
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=30.91 E-value=73 Score=26.41 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCCC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQN 183 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~~ 183 (200)
-.+++.++.+++++|+||=.+|.--.+ +. ..+-++++.+.+|.+...++++.
T Consensus 54 ~~e~l~~~l~e~~i~llIDATHPyAa~-iS---------------~Na~~aake~gipy~r~eRP~~~ 105 (257)
T COG2099 54 GAEGLAAFLREEGIDLLIDATHPYAAR-IS---------------QNAARAAKETGIPYLRLERPPWA 105 (257)
T ss_pred CHHHHHHHHHHcCCCEEEECCChHHHH-HH---------------HHHHHHHHHhCCcEEEEECCccc
Confidence 389999999999999999999860000 01 35666778889999999888874
No 164
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=30.72 E-value=1.8e+02 Score=23.53 Aligned_cols=37 Identities=8% Similarity=-0.038 Sum_probs=30.0
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
.++|.+|+|+..+...|...+..++...+-.+.++..
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~l 190 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVIEI 190 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4789999999999999999999988777766655443
No 165
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=30.51 E-value=2.2e+02 Score=20.91 Aligned_cols=34 Identities=6% Similarity=0.116 Sum_probs=25.5
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++++ +.+--+.+.+.+++.+.++++|+|.++...
T Consensus 31 G~eV--i~LG~~vp~e~i~~~a~~~~~d~V~lS~~~ 64 (137)
T PRK02261 31 GFEV--INLGVMTSQEEFIDAAIETDADAILVSSLY 64 (137)
T ss_pred CCEE--EECCCCCCHHHHHHHHHHcCCCEEEEcCcc
Confidence 4555 333223489999999999999999998754
No 166
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=30.25 E-value=1.6e+02 Score=22.82 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 118 AIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 118 ~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
+.+.+..+..++|.||.=..+++ ..+..+..+.++|++++|++.+
T Consensus 43 ~~~~~~~~~~~id~Iv~iea~Gi--------------------~~a~~vA~~Lgvp~v~vRK~~k 87 (179)
T COG0503 43 DELAERYKDDGIDKIVTIEARGI--------------------PLAAAVALELGVPFVPVRKKGK 87 (179)
T ss_pred HHHHHHhcccCCCEEEEEccccc--------------------hhHHHHHHHhCCCEEEEEecCC
Confidence 35566666677999988765411 2455688888999999999777
No 167
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.91 E-value=2.1e+02 Score=22.26 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEecC
Q 045490 115 NKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 115 ~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
.|.+.+++.+.+.++|+|.++..
T Consensus 120 ~p~~~l~~~~~~~~~d~v~lS~~ 142 (201)
T cd02070 120 VPPEEFVEAVKEHKPDILGLSAL 142 (201)
T ss_pred CCHHHHHHHHHHcCCCEEEEecc
Confidence 38999999999999999999874
No 168
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=29.91 E-value=2e+02 Score=23.27 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.2
Q ss_pred EecCCcHHHHHHHHHHHcCCCEEEEec
Q 045490 110 HTESGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 110 ~~~g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
-+.|. +...-+..+.+-++|.+|+|+
T Consensus 173 eVDGG-I~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 173 EVDGG-INLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred EEeCC-cCHHHHHHHHHcCCCEEEEEE
Confidence 45677 788888888889999999999
No 169
>COG2262 HflX GTPases [General function prediction only]
Probab=29.80 E-value=1.5e+02 Score=26.38 Aligned_cols=52 Identities=23% Similarity=0.239 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHhCCCc-c--------eEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 84 GEDFLEEMKQACEVAKPKL-R--------VHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~-~--------v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
.++.++++..+++..+-+. + .+..+.+..| -.++|...++..++|+||....
T Consensus 18 ~~~~leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~G--K~eEi~~~v~~~~ad~VIf~~~ 78 (411)
T COG2262 18 FEESLEELAELAETAGYEVVEVVTQKRERPDPKTYIGSG--KLEEIAEAVEETGADLVIFDHE 78 (411)
T ss_pred chhhHHHHHHHHHHcCCeEeeeEEEeccCCCcceecCcc--hHHHHHHHHHhcCCCEEEECCc
Confidence 4567888888888765331 0 1111123334 4899999999999999999875
No 170
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=29.78 E-value=97 Score=25.39 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCC-CcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSL-SNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~-~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
....|++.+.+.+.|.|++|..... .+... .+.+.|-.+.+.||++......
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~---------------~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENVD---------------NVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHHH---------------HHHHHHHhhcCCCEEEecCChh
Confidence 5678889999999999999875422 12222 3566666689999999865544
No 171
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=29.31 E-value=66 Score=25.49 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEec
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
-+.++++++...+.+. ++.+ .+.|. +...-+..+.+.++|.+|.|+
T Consensus 150 ~~KI~~l~~~~~~~~~--~~~I---~vDGG-I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 150 LEKIRELRKLIPENGL--DFEI---EVDGG-INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHHHHTC--GSEE---EEESS-ESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHHhcCC--ceEE---EEECC-CCHHHHHHHHHcCCCEEEECH
Confidence 3556667777666553 3444 35677 666667777788999999996
No 172
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=29.22 E-value=72 Score=25.90 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEE
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCV 175 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVL 175 (200)
....+.+..++.++|.||+|-.+ ++ +.++++-+...+||+
T Consensus 162 l~~~~~~a~~edgAeaIiLGCAG------ms--------------~la~~Lq~~~gvPVI 201 (230)
T COG4126 162 LVIEAAEALKEDGAEAIILGCAG------MS--------------DLADQLQKAFGVPVI 201 (230)
T ss_pred HHHHHHHHhhhcCCCEEEEcCcc------HH--------------HHHHHHHHHhCCCcc
Confidence 45667778889999999999887 33 566666666777774
No 173
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=29.12 E-value=89 Score=26.59 Aligned_cols=49 Identities=27% Similarity=0.280 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCC---C-CCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 115 NKAAIILSQSTAHGVDLLIIGQRR---S-LSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 115 ~~~~~I~~~a~~~~~dllVmG~~~---~-~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
.+....++++++ +|+||+|-.+ + +...+.. .+.+ .+++++||++.|-+-
T Consensus 164 ~~~~~a~~AI~~--AD~Iv~gPGSlyTSI~P~Llv~--------------gI~e-Ai~~s~a~kV~v~N~ 216 (308)
T cd07187 164 KANPEALEAIEE--ADLIVYGPGSLYTSILPNLLVK--------------GIAE-AIRASKAPKVYICNL 216 (308)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHHhhhhcCch--------------hHHH-HHHhCCCCEEEEecC
Confidence 366777888754 8999999765 2 2333333 3554 567888999998544
No 174
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=28.87 E-value=1.5e+02 Score=22.02 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 113 SGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 113 g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
|..+.+.|.+.|.+++ -.++.+.. . ...+.+.+. ++||+.+++..
T Consensus 83 ~~~aDe~i~~~a~~~~--~~iVaTnD------~---------------eLk~rlr~~-GIPvi~lr~r~ 127 (136)
T COG1412 83 GRYADECLLEAALKHG--RYIVATND------K---------------ELKRRLREN-GIPVITLRQRK 127 (136)
T ss_pred CCChHHHHHHHHHHcC--CEEEEeCC------H---------------HHHHHHHHc-CCCEEEEeCCe
Confidence 5558999999999987 33344433 0 244444444 99999998653
No 175
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=28.46 E-value=63 Score=24.95 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=27.0
Q ss_pred cCCCEEEE-ecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 127 HGVDLLII-GQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 127 ~~~dllVm-G~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
.+.|++++ |..+.......+ ..-.++++..++||++|-.-..
T Consensus 98 ~~~D~vlVEGag~~~~~~~~~--------------~~n~dia~~L~a~vIlV~~~~~ 140 (199)
T PF13500_consen 98 EEYDVVLVEGAGGLMVPIFSG--------------DLNADIAKALGAPVILVASGRL 140 (199)
T ss_dssp TTTCEEEEEESSSTTSECCTT--------------EEHHHHHHHHT-EEEEEEESST
T ss_pred hcCCEEEEeCCcccCcccccC--------------hHHHHHHHHcCCCEEEEeCCCC
Confidence 36799988 554433333333 4566899999999999954433
No 176
>PF13362 Toprim_3: Toprim domain
Probab=28.24 E-value=1.7e+02 Score=19.63 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=25.9
Q ss_pred CCCCeEEEEECCCcc--hHHHHHHHHHhcCCCCCeEEE
Q 045490 6 PQSRKVMVIADPTRE--SAGALQYALSHVLLEEDELVL 41 (200)
Q Consensus 6 ~~~~~IlVavD~s~~--s~~al~~A~~la~~~~a~l~l 41 (200)
...++|+++.|.... ...+...+...+...+-.+.+
T Consensus 39 ~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~ 76 (96)
T PF13362_consen 39 EPGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSI 76 (96)
T ss_pred CCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEE
Confidence 367899999998887 677777776666655555444
No 177
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=28.00 E-value=1.3e+02 Score=21.82 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=33.0
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
...+|+|+-|....|....+.++.-+...+.+|..+...
T Consensus 39 ~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~ 77 (137)
T PF02878_consen 39 NGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLV 77 (137)
T ss_dssp TSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhhccccccccccc
Confidence 467999999999999998888888888889899888864
No 178
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=27.41 E-value=1.7e+02 Score=19.93 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHH
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYL 166 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~v 166 (200)
+.+++++.+++.+ +++++... . ..+ +.... .++|+|+++.+- +..+ ...++.
T Consensus 15 ~~~ki~~~~~~~~----~~~~v~~~--~-~~~-~~~~~--~~~Diil~~Pqv---~~~~---------------~~i~~~ 66 (96)
T cd05564 15 LVKKMKKAAEKRG----IDAEIEAV--P-ESE-LEEYI--DDADVVLLGPQV---RYML---------------DEVKKK 66 (96)
T ss_pred HHHHHHHHHHHCC----CceEEEEe--c-HHH-HHHhc--CCCCEEEEChhH---HHHH---------------HHHHHH
Confidence 4556666666654 44433322 2 222 32333 568999999764 1111 123334
Q ss_pred HcCCCccEEEEecCCC
Q 045490 167 IQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 167 l~~s~~pVLvv~~~~~ 182 (200)
+....+||.++.....
T Consensus 67 ~~~~~~pv~~I~~~~Y 82 (96)
T cd05564 67 AAEYGIPVAVIDMMDY 82 (96)
T ss_pred hccCCCcEEEcChHhc
Confidence 4567899999977655
No 179
>PHA02031 putative DnaG-like primase
Probab=27.27 E-value=92 Score=25.97 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=30.2
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
.++|++++|+.....+|...|++++...+-.+.++..
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~l 242 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIIT 242 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 4799999999999999999999988777666665554
No 180
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.19 E-value=1.2e+02 Score=27.58 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=9.3
Q ss_pred hcCCCCCeEEEEEe
Q 045490 31 HVLLEEDELVLLHV 44 (200)
Q Consensus 31 la~~~~a~l~llhV 44 (200)
.+.....-+.++|.
T Consensus 19 ~a~~i~~~~~i~H~ 32 (513)
T CHL00076 19 VASSFKNVHAIMHA 32 (513)
T ss_pred HHHhcCCcEEEeeC
Confidence 33445567888888
No 181
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.97 E-value=4.2e+02 Score=22.98 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHH---HHHHHcCCCEEEEecCC
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIIL---SQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~---~~a~~~~~dllVmG~~~ 138 (200)
...++++.+.+. .++++-..- .|.||+..+- ++++..++|.|++-+-|
T Consensus 181 aAiEQL~~w~er----~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAG 231 (340)
T COG0552 181 AAIEQLEVWGER----LGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAG 231 (340)
T ss_pred HHHHHHHHHHHH----hCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcc
Confidence 344555555443 356664332 6888887664 45677999999998866
No 182
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=26.79 E-value=2.3e+02 Score=23.83 Aligned_cols=60 Identities=5% Similarity=-0.004 Sum_probs=41.9
Q ss_pred EEecCCcHHHHHHHHHHHcCCCEEEEecCCCC---CcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 109 VHTESGNKAAIILSQSTAHGVDLLIIGQRRSL---SNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 109 ~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~---~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
.-.....-..++++.|++.+..+|+..+.+.+ ....+. .....+.+++++||.+-=+...
T Consensus 23 fN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~--------------~~~~~~a~~~~VPValHLDHg~ 85 (286)
T PRK12738 23 FNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIY--------------ALCSAYSTTYNMPLALHLDHHE 85 (286)
T ss_pred EEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHH--------------HHHHHHHHHCCCCEEEECCCCC
Confidence 33444458999999999999999998776521 111122 4677788899999998744443
No 183
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.70 E-value=1.3e+02 Score=24.61 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCCCcceee-ee
Q 045490 121 LSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQNAGYLL-NT 190 (200)
Q Consensus 121 ~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~~~~~~~-~~ 190 (200)
....+++++|.||.=..| +. +...=-...+..++||+++++|..+.+... ++
T Consensus 187 ~al~~~~~i~~lVtK~SG-----------------~~-g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~ 239 (249)
T PF02571_consen 187 RALFRQYGIDVLVTKESG-----------------GS-GFDEKIEAARELGIPVIVIKRPPEPYGDPVVET 239 (249)
T ss_pred HHHHHHcCCCEEEEcCCC-----------------ch-hhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCC
No 184
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=26.43 E-value=4.7e+02 Score=23.39 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 045490 117 AAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~~ 138 (200)
..++.+.+++.++||++-|+++
T Consensus 384 ~~e~~~~i~~~~pDllig~~~~ 405 (457)
T TIGR01284 384 ELELEEIIEKYKPDIILTGIRE 405 (457)
T ss_pred HHHHHHHHHhcCCCEEEecCCc
Confidence 4466677888999998876665
No 185
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=26.15 E-value=1.2e+02 Score=23.46 Aligned_cols=35 Identities=6% Similarity=0.064 Sum_probs=27.2
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEE
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLH 43 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llh 43 (200)
.+||++++-++..+.++.++.-.+.+ .+.+|.++-
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~-~g~~V~vv~ 35 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTK-RGYQVTVLM 35 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 37899999999999998888777754 566766543
No 186
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=26.07 E-value=1.4e+02 Score=26.64 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=9.1
Q ss_pred CCCCCeEEEEEe
Q 045490 33 LLEEDELVLLHV 44 (200)
Q Consensus 33 ~~~~a~l~llhV 44 (200)
....+.++++|-
T Consensus 55 ~~I~d~~~lvHG 66 (456)
T TIGR01283 55 LPITDAAHLVHG 66 (456)
T ss_pred HccCCEEEEEeC
Confidence 445678999997
No 187
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=25.85 E-value=1.7e+02 Score=18.66 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeE
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDEL 39 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l 39 (200)
.++|.++.|.......+...+...+...+..+
T Consensus 43 ~~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~ 74 (79)
T cd01029 43 ARTVILAFDNDEAGKKAAARALELLLALGGRV 74 (79)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEE
Confidence 38999999988887777777766665544333
No 188
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=25.83 E-value=3.8e+02 Score=22.51 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCCEEEEecC
Q 045490 117 AAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~ 137 (200)
...+++.+++.++|.|++..+
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r 169 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGR 169 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEcc
Confidence 456777778889999998654
No 189
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=25.78 E-value=1.7e+02 Score=20.01 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEec
Q 045490 114 GNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQR 179 (200)
Q Consensus 114 ~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~ 179 (200)
.++.+.|++.+.+++. .++++.. . ..-.++....++||+.+++
T Consensus 51 ~~addci~~~~~~~~~--~~VaT~D------~---------------~Lr~~lr~~~GvPvi~l~~ 93 (101)
T PF04900_consen 51 GSADDCILDLAGKNNK--YIVATQD------K---------------ELRRRLRKIPGVPVIYLRR 93 (101)
T ss_pred cCHHHHHHHHhccCCe--EEEEecC------H---------------HHHHHHhcCCCCCEEEEEC
Confidence 3499999999988776 5555543 0 2445566688999999984
No 190
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=25.72 E-value=1.5e+02 Score=25.47 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCc-c--------eEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 86 DFLEEMKQACEVAKPKL-R--------VHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~-~--------v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
+.++++..+|+..+-+. + .+..+.+..| -.++|.+.++..++|+||.-..
T Consensus 17 ~~~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~g--k~~e~~~~~~~~~~~~vi~~~~ 75 (351)
T TIGR03156 17 ESLEELAELAETAGAEVVGTVTQKRSRPDPATYIGKG--KVEEIAELVEELEADLVIFDHE 75 (351)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEEecCCCCCCeEeccc--HHHHHHHHHHhcCCCEEEECCC
Confidence 57888999988875331 1 0111112233 4889999999999999999753
No 191
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=25.57 E-value=1.3e+02 Score=24.69 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 121 LSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 121 ~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
....+++++|.||.=..| |. +...--...+..++||+++++|.
T Consensus 183 ~aL~~~~~i~~lVtK~SG-----------------~~-g~~eKi~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 183 RALLRQHRIDVVVTKNSG-----------------GA-GTEAKLEAARELGIPVVMIARPA 225 (248)
T ss_pred HHHHHHcCCCEEEEcCCC-----------------ch-hhHHHHHHHHHcCCeEEEEeCCC
No 192
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.41 E-value=1.5e+02 Score=26.60 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEec
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQR 179 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~ 179 (200)
.+++|.+..++.++|-+||-++-+.... .| ++..+-+.++.+||+.+-.
T Consensus 324 ~g~eIa~~Lk~dgVDAVILTstCgtC~r-~~--------------a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 324 FAKEFVVELKQGGVDAVILTSTUGTCTR-CG--------------ATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchh-HH--------------HHHHHHHHHcCCCEEEEee
Confidence 5788999999999999999876311111 23 5777788899999999865
No 193
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.19 E-value=1.4e+02 Score=24.51 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=29.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHH--HHHcCCCccEEEEecCCCC
Q 045490 121 LSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAE--YLIQNSKCNCVGVQRKGQN 183 (200)
Q Consensus 121 ~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~--~vl~~s~~pVLvv~~~~~~ 183 (200)
....+++++|.||.=..|. .| .+.+ ...++.++||++|++|..+
T Consensus 190 ~al~~~~~i~~lVtK~SG~-----~G--------------g~~eKi~AA~~lgi~vivI~RP~~~ 235 (256)
T TIGR00715 190 KALLREYRIDAVVTKASGE-----QG--------------GELEKVKAAEALGINVIRIARPQTI 235 (256)
T ss_pred HHHHHHcCCCEEEEcCCCC-----cc--------------chHHHHHHHHHcCCcEEEEeCCCCC
Confidence 4556778999998854431 11 2333 4567889999999988764
No 194
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=25.18 E-value=5.3e+02 Score=23.53 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 117 AAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
...+.+.+++.++|||+ |+. ...++.++.++|.+.+..|-
T Consensus 351 ~~el~~~i~~~~Pdlii-G~~------------------------~er~~a~~lgiP~~~i~~Pv 390 (519)
T PRK02910 351 YLEVEDAIAEAAPELVL-GTQ------------------------MERHSAKRLGIPCAVISAPT 390 (519)
T ss_pred HHHHHHHHHhcCCCEEE-Ecc------------------------hHHHHHHHcCCCEEEecccc
Confidence 36778888889999998 332 23457778888988887554
No 195
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=24.98 E-value=2.3e+02 Score=24.69 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=42.2
Q ss_pred EEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCccccc--ccc--c-CCCccC-CCCcChHHHHHcCCCccEEEEecCCC
Q 045490 109 VHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILG--YRR--A-GGSLRG-SKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 109 ~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G--~~~--~-~~~~~~-~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
.-.....-..++++.|++.+..+|+..+.+..... .| ... + +-.+.| -.+......+.+++++||.+-=+...
T Consensus 32 fNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~ 110 (357)
T TIGR01520 32 INCTSSSTINAALEAAADVKSPIIIQFSNGGAAFI-AGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCA 110 (357)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhc-CCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 33444447999999999999999999876522110 00 000 0 000000 00124677788899999988754443
No 196
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=24.79 E-value=5.7e+02 Score=23.82 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=20.5
Q ss_pred cCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 112 ESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 112 ~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
-|. -...-+++++++++|+||+..|.
T Consensus 136 ~Gi-~~~e~i~~a~~~gidvIVtDHH~ 161 (575)
T PRK11070 136 NGI-SSHAGVAHAHALGIPVLVTDHHL 161 (575)
T ss_pred CCc-CCHHHHHHHHHCCCCEEEECCCC
Confidence 355 45566788999999999999885
No 197
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.64 E-value=1.7e+02 Score=25.58 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=13.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 113 SGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 113 g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
|+|+...+-+.-++.++.++.+.+.+
T Consensus 102 GdDi~~v~~~~~~~~~~~vi~v~t~g 127 (410)
T cd01968 102 GDDIDAVCKTASEKFGIPVIPVHSPG 127 (410)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEECCC
Confidence 55544444444334556666665544
No 198
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=24.12 E-value=2.1e+02 Score=24.35 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCC---CCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEE
Q 045490 115 NKAAIILSQSTAHGVDLLIIGQRR---SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGV 177 (200)
Q Consensus 115 ~~~~~I~~~a~~~~~dllVmG~~~---~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv 177 (200)
.+..+.++++.+ +|+||+|-.+ ++-..+.= ..+.+.+ ++.||+.|
T Consensus 174 ~a~p~vl~AI~~--AD~IiiGPgnp~TSI~P~L~v-------------~gi~eAL---~~a~vV~V 221 (303)
T PRK13606 174 KPAPGVLEAIEE--ADAVIIGPSNPVTSIGPILAV-------------PGIREAL---TEAPVVAV 221 (303)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHhhchhccc-------------hhHHHHH---hCCCEEEE
Confidence 367788888754 7999999866 33222221 1466666 88999955
No 199
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.98 E-value=3.8e+02 Score=21.43 Aligned_cols=45 Identities=11% Similarity=0.274 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
.+.++++...+.+ .++.+ .+.|. +...=+..+.+.++|.+|+|+-
T Consensus 153 kI~~l~~~~~~~~--~~~~I---~vdGG-I~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 153 KLRAVRKMIDESG--RDIRL---EIDGG-VKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHHhcC--CCeeE---EEECC-CCHHHHHHHHHcCCCEEEEeHH
Confidence 4455555444322 12333 34566 5555566667789999999973
No 200
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.93 E-value=2.9e+02 Score=23.24 Aligned_cols=60 Identities=7% Similarity=0.081 Sum_probs=41.5
Q ss_pred EEecCCcHHHHHHHHHHHcCCCEEEEecCCCC---CcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 109 VHTESGNKAAIILSQSTAHGVDLLIIGQRRSL---SNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 109 ~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~---~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
.-.....-..++++.|++.+...|+..+.+.. .--.+. .......+++++||.+-=+...
T Consensus 23 fNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~--------------~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 23 FNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYIS--------------AMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHH--------------HHHHHHHHHCCCCEEEECCCCC
Confidence 34444457999999999999999998876511 111122 4567788899999988754443
No 201
>PRK08185 hypothetical protein; Provisional
Probab=23.90 E-value=2.9e+02 Score=23.16 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=41.2
Q ss_pred EEecCCcHHHHHHHHHHHcCCCEEEEecCCCC--CcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 109 VHTESGNKAAIILSQSTAHGVDLLIIGQRRSL--SNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 109 ~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~--~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
.-.....-..++++.|++.+.-+|+..+.+.. ...-+. .....+.+++++||.+-=+..
T Consensus 18 fN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~--------------~~~~~~a~~~~vPV~lHLDHg 78 (283)
T PRK08185 18 FNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFF--------------AYVRERAKRSPVPFVIHLDHG 78 (283)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHH--------------HHHHHHHHHCCCCEEEECCCC
Confidence 33333447899999999999999999886611 111122 577788889999988764443
No 202
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=23.80 E-value=1.4e+02 Score=23.10 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=25.5
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEE
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLH 43 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llh 43 (200)
+||+|++-++..+.++.++.-.+. +.+.+|+++-
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~-~~g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLT-KLGYDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 689999999999988887766664 4566766543
No 203
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=23.72 E-value=1.3e+02 Score=22.26 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=29.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEec
Q 045490 113 SGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQR 179 (200)
Q Consensus 113 g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~ 179 (200)
|..+.+ ..+....+ +|+||+-... . ...+++...+.|||+=-..
T Consensus 81 ~Esl~D-tar~ls~~-~D~iv~R~~~------~---------------~~~~~~a~~~~vPVINa~~ 124 (142)
T PF02729_consen 81 GESLED-TARVLSRY-VDAIVIRHPS------H---------------GALEELAEHSSVPVINAGD 124 (142)
T ss_dssp SSEHHH-HHHHHHHH-CSEEEEEESS------H---------------HHHHHHHHHCSSEEEEEEE
T ss_pred CCCHHH-HHHHHHHh-hheEEEEecc------c---------------hHHHHHHHhccCCeEcCcC
Confidence 443333 33444455 8999997655 2 3778899999999975443
No 204
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=23.72 E-value=81 Score=29.56 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCCEEEEecC
Q 045490 117 AAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~ 137 (200)
.+.+.++|+++++.|||+|..
T Consensus 57 ~~ala~f~~e~~I~lVvvGPE 77 (788)
T KOG0237|consen 57 FEALASFCKEHNINLVVVGPE 77 (788)
T ss_pred HHHHHHHHHHcceeEEEECCc
Confidence 566666666677777776653
No 205
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=23.67 E-value=1.6e+02 Score=25.51 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 113 SGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 113 g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
|+|+...+-+.-++.++.+|.+-+.+
T Consensus 103 GdDi~~v~~~~~~~~~~~vi~v~t~g 128 (406)
T cd01967 103 GDDIEAVAKEASKELGIPVIPVNCEG 128 (406)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCC
Confidence 66555444444445566666666554
No 206
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=23.52 E-value=1.4e+02 Score=25.65 Aligned_cols=50 Identities=24% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---C-CCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRR---S-LSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~---~-~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
+.++.++++++ +|+||+|-.+ + +...+.. .+.+ .++++..|++.+.+-.-
T Consensus 179 a~~eaveAI~~--AD~IviGPgSl~TSIlP~Lllp--------------~I~e-aLr~~~ap~i~v~n~~~ 232 (323)
T COG0391 179 AAPEAVEAIKE--ADLIVIGPGSLFTSILPILLLP--------------GIAE-ALRETVAPIVYVCNLMT 232 (323)
T ss_pred CCHHHHHHHHh--CCEEEEcCCccHhhhchhhchh--------------HHHH-HHHhCCCCEEEeccCCC
Confidence 55666777754 8999999865 2 2334443 4555 55559999999876544
No 207
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=23.31 E-value=3.1e+02 Score=23.04 Aligned_cols=60 Identities=2% Similarity=-0.015 Sum_probs=42.3
Q ss_pred EEecCCcHHHHHHHHHHHcCCCEEEEecCCCC---CcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 109 VHTESGNKAAIILSQSTAHGVDLLIIGQRRSL---SNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 109 ~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~---~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
.-.....-.+++++.|++.+.-+|+.-+.+.+ .-..+. .....+.+++++||-+-=+.+.
T Consensus 21 fN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~--------------~~~~~~a~~~~VPValHLDHg~ 83 (282)
T TIGR01858 21 FNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIV--------------ALCSAASTTYNMPLALHLDHHE 83 (282)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHH--------------HHHHHHHHHCCCCEEEECCCCC
Confidence 33334458999999999999999998876511 111122 5778889999999988754443
No 208
>PRK13054 lipid kinase; Reviewed
Probab=23.27 E-value=3.8e+02 Score=22.21 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCCEEEEec
Q 045490 117 AAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~ 136 (200)
+..+++.+...++|.||+..
T Consensus 45 a~~~a~~~~~~~~d~vvv~G 64 (300)
T PRK13054 45 AARYVEEALALGVATVIAGG 64 (300)
T ss_pred HHHHHHHHHHcCCCEEEEEC
Confidence 55566655556678777654
No 209
>PLN02285 methionyl-tRNA formyltransferase
Probab=23.16 E-value=4.8e+02 Score=22.33 Aligned_cols=21 Identities=24% Similarity=0.071 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCCEEEEecCC
Q 045490 118 AIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 118 ~~I~~~a~~~~~dllVmG~~~ 138 (200)
+.+++..++.++|++|+..-+
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~ 103 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYG 103 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhh
Confidence 455677788899999998643
No 210
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=23.13 E-value=78 Score=28.23 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCCEEEEecC
Q 045490 117 AAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~ 137 (200)
.+.|+++|++.++||+|+|.-
T Consensus 52 ~~~lv~fA~~~~idl~vVGPE 72 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGPE 72 (428)
T ss_pred HHHHHHHHHHcCCCEEEECCc
Confidence 788999999999999999974
No 211
>PLN02828 formyltetrahydrofolate deformylase
Probab=23.09 E-value=4.4e+02 Score=21.92 Aligned_cols=37 Identities=11% Similarity=-0.026 Sum_probs=28.0
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
..+||.|-+.++..+..+|-++..-- ..+++|.++-.
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~g-~l~~eI~~ViS 105 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQDG-RLPVDITCVIS 105 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhcC-CCCceEEEEEe
Confidence 45799999999999999998876553 35677776655
No 212
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=23.00 E-value=5.2e+02 Score=22.68 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=27.4
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
...++++++.+.-+|..|+-... +.|.+|..+|+.
T Consensus 179 s~gkvlvllSGGiDSpVAa~ll~----krG~~V~~v~f~ 213 (381)
T PRK08384 179 TQGKVVALLSGGIDSPVAAFLMM----KRGVEVIPVHIY 213 (381)
T ss_pred CCCcEEEEEeCChHHHHHHHHHH----HcCCeEEEEEEE
Confidence 45799999999999987664433 348899999995
No 213
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.97 E-value=1.4e+02 Score=26.26 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=9.4
Q ss_pred hcCCCCCeEEEEEe
Q 045490 31 HVLLEEDELVLLHV 44 (200)
Q Consensus 31 la~~~~a~l~llhV 44 (200)
.+....+.++++|-
T Consensus 18 ~~~~I~~~~~i~Hg 31 (426)
T cd01972 18 ILSGIRDAVVVQHG 31 (426)
T ss_pred HHhccCCeEEEEeC
Confidence 33445678888887
No 214
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=22.96 E-value=3.7e+02 Score=22.07 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhCCCc-ceEEEEEEecCC-cHHHHHHHHHHHcCCCEEEEecC
Q 045490 85 EDFLEEMKQACEVAKPKL-RVHVEKVHTESG-NKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~-~v~v~~~~~~g~-~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
.+..+-+++.+++.+... .+.++..-.+|+ .-...+++.....++|+|+....
T Consensus 14 ~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt 68 (294)
T PF04392_consen 14 DDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGT 68 (294)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESH
T ss_pred HHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 456667777777666443 345544555566 12445555556689999997543
No 215
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=22.95 E-value=1.3e+02 Score=23.54 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=26.0
Q ss_pred CeEEEEECCCcchHHHH-HHHHHhcCCCCCeEEEEEe
Q 045490 9 RKVMVIADPTRESAGAL-QYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al-~~A~~la~~~~a~l~llhV 44 (200)
+||++++-++-.+.++. +..-.+ .+.+.+|+++-.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L-~~~g~~V~vI~S 36 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL-VDEGAEVTPIVS 36 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH-HhCcCEEEEEEc
Confidence 58999999999999987 555555 556777766544
No 216
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.77 E-value=4.2e+02 Score=21.55 Aligned_cols=14 Identities=0% Similarity=-0.173 Sum_probs=10.2
Q ss_pred CCCCeEEEEECCCc
Q 045490 6 PQSRKVMVIADPTR 19 (200)
Q Consensus 6 ~~~~~IlVavD~s~ 19 (200)
|+.++|..++|..+
T Consensus 1 m~~~~iipaiD~~~ 14 (258)
T PRK01033 1 MLRPRIIPCLLLKD 14 (258)
T ss_pred CCCcEEEEEEEEEC
Confidence 45788888888654
No 217
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=22.76 E-value=4.4e+02 Score=22.74 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCEEE-EecCC
Q 045490 117 AAIILSQSTAHGVDLLI-IGQRR 138 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllV-mG~~~ 138 (200)
.+.+++.+++.++|.|| +|..+
T Consensus 69 v~~~~~~~~~~~~D~IIaiGGGS 91 (375)
T cd08194 69 VEEGVKLAKEGGCDVIIALGGGS 91 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCch
Confidence 55677778889999988 66543
No 218
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=22.75 E-value=4.3e+02 Score=26.90 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=56.7
Q ss_pred CCCCCCCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccccc
Q 045490 1 MEAGTPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAA 80 (200)
Q Consensus 1 ~~~~~~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (200)
|+++..|=+ |||=|-.=.-....-.|+..|...+-+|.++-- ++
T Consensus 610 M~~~kpMDR--LiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVP----------------TT------------------ 653 (1139)
T COG1197 610 MESGKPMDR--LICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVP----------------TT------------------ 653 (1139)
T ss_pred hccCCcchh--eeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcc----------------cH------------------
Confidence 455543333 455554444444455666677766766666422 10
Q ss_pred ccchHHHHHHHHHHHHHhCCCcceEEEE--EEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 81 APGGEDFLEEMKQACEVAKPKLRVHVEK--VHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~v~v~~--~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
--++++.+.++++++.+ .|+|+. +..... -...|++..++..+|+ |+|+|.
T Consensus 654 -lLA~QHy~tFkeRF~~f----PV~I~~LSRF~s~k-E~~~il~~la~G~vDI-vIGTHr 706 (1139)
T COG1197 654 -LLAQQHYETFKERFAGF----PVRIEVLSRFRSAK-EQKEILKGLAEGKVDI-VIGTHR 706 (1139)
T ss_pred -HhHHHHHHHHHHHhcCC----CeeEEEecccCCHH-HHHHHHHHHhcCCccE-EEechH
Confidence 12357888888887654 344443 334444 6778888888888885 568876
No 219
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=22.67 E-value=2.6e+02 Score=24.87 Aligned_cols=48 Identities=10% Similarity=-0.047 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 117 AAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
...+.+.++..++|.||+--.. +|. ++..-..++..++|||++..++.
T Consensus 52 ~~~~~~~~~~~~~d~ii~~~~t------f~~------------~~~~~~~~~~~~~Pvll~a~~~~ 99 (452)
T cd00578 52 ARKAAEEFNEANCDGLIVWMHT------FGP------------AKMWIAGLSELRKPVLLLATQFN 99 (452)
T ss_pred HHHHHHHHhhcCCcEEEEcccc------ccc------------HHHHHHHHHhcCCCEEEEeCCCC
Confidence 5556677777799999997765 221 03344556678999999987763
No 220
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=22.63 E-value=1.8e+02 Score=25.40 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=13.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 113 SGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 113 g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
|+|+...+-+.-++.++.+|.+-+.+
T Consensus 103 GDDi~~v~~~~~~~~~~pvi~v~t~g 128 (396)
T cd01979 103 KMDLEGAAPRLSAEIGVPILVASASG 128 (396)
T ss_pred hcCHHHHHHHHhhcCCCcEEEeeCCC
Confidence 66544444444344566666665544
No 221
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=22.22 E-value=3.6e+02 Score=22.95 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCEEE-EecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 117 AAIILSQSTAHGVDLLI-IGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllV-mG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
.+.+.+.+++ ++|.|| +|... .. +++..+.-...+|++.|+-.
T Consensus 70 v~~~~~~~~~-~~d~IIaIGGGs------~~--------------D~aK~vA~~~~~p~i~IPTT 113 (348)
T cd08175 70 VGRVLKELER-DTDLIIAVGSGT------IN--------------DITKYVSYKTGIPYISVPTA 113 (348)
T ss_pred HHHHHHHhhc-cCCEEEEECCcH------HH--------------HHHHHHHHhcCCCEEEecCc
Confidence 3345555555 788887 56543 11 46666655567888888765
No 222
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=21.95 E-value=2.4e+02 Score=22.58 Aligned_cols=27 Identities=11% Similarity=0.352 Sum_probs=20.9
Q ss_pred EecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 110 HTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 110 ~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
.+.|. +...-+..+.+.++|.+|+|+-
T Consensus 177 ~VdGG-I~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 177 QVDGG-INLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred EECCC-CCHHHHHHHHHcCCCEEEEchH
Confidence 45677 6666677777889999999973
No 223
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=21.70 E-value=1.7e+02 Score=26.33 Aligned_cols=12 Identities=25% Similarity=0.041 Sum_probs=8.8
Q ss_pred CCCCCeEEEEEe
Q 045490 33 LLEEDELVLLHV 44 (200)
Q Consensus 33 ~~~~a~l~llhV 44 (200)
....+.+.++|-
T Consensus 53 ~~I~da~~lvHG 64 (475)
T PRK14478 53 QPITDVAHLVHG 64 (475)
T ss_pred hccCCEEEEEEC
Confidence 345678889886
No 224
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.64 E-value=4e+02 Score=22.35 Aligned_cols=60 Identities=5% Similarity=0.053 Sum_probs=41.7
Q ss_pred EEecCCcHHHHHHHHHHHcCCCEEEEecCCCC---CcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 109 VHTESGNKAAIILSQSTAHGVDLLIIGQRRSL---SNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 109 ~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~---~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
.-.....-..++++.|++.+..+|+.-+.+.. ..-.+. .....+.+++++||-+-=+...
T Consensus 23 fN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~--------------~~~~~~a~~~~VPValHLDH~~ 85 (284)
T PRK12737 23 FNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIV--------------AIAEVAARKYNIPLALHLDHHE 85 (284)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHH--------------HHHHHHHHHCCCCEEEECCCCC
Confidence 33444458999999999999999998776511 111122 4677888899999988754443
No 225
>PRK11058 GTPase HflX; Provisional
Probab=21.61 E-value=2.2e+02 Score=25.29 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEE--------EecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKV--------HTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~--------~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
+.++++..+++..+-+. +...+. ..-|.--.++|.+.++..++|+||+-..
T Consensus 25 ~~~~El~~L~~~~g~~v-~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~ 83 (426)
T PRK11058 25 EDLQEFESLVSSAGVEA-LQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHA 83 (426)
T ss_pred hhHHHHHHHHHHCCCEE-EEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCC
Confidence 56889999988876431 110000 1113334889999999999999999853
No 226
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=21.61 E-value=6.3e+02 Score=23.14 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=14.3
Q ss_pred HHHHHHcCCCEEEEecCC
Q 045490 121 LSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 121 ~~~a~~~~~dllVmG~~~ 138 (200)
.+.+++.++|+++-|+++
T Consensus 391 ~~~l~~~~~Dllig~s~~ 408 (513)
T TIGR01861 391 LEAMEMLKPDIILTGKRP 408 (513)
T ss_pred HHHHHhcCCCEEEecCcc
Confidence 456678899999988765
No 227
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=21.46 E-value=6.3e+02 Score=23.09 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEec
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
-|.++...+++..+...|.| .+..+. +.+.|..-+-+-++|+|++..
T Consensus 289 DLaqlI~dLk~~~~~~~I~V--Klva~~-~v~~iaagvakA~AD~I~IdG 335 (485)
T COG0069 289 DLAQLIKDLKEANPWAKISV--KLVAEH-GVGTIAAGVAKAGADVITIDG 335 (485)
T ss_pred HHHHHHHHHHhcCCCCeEEE--EEeccc-chHHHHhhhhhccCCEEEEcC
Confidence 33333344444444434444 667666 777777756667899999965
No 228
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=21.30 E-value=1.4e+02 Score=18.74 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=17.7
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcC
Q 045490 9 RKVMVIADPTRESAGALQYALSHVL 33 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~ 33 (200)
++|.+++|.+++...+..++.+.+.
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~ 72 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLK 72 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhh
Confidence 5688888888877777666655543
No 229
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=21.28 E-value=88 Score=28.95 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHcCCCEEEEec---CC--CCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCCCcce
Q 045490 115 NKAAIILSQSTAHGVDLLIIGQ---RR--SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQNAGY 186 (200)
Q Consensus 115 ~~~~~I~~~a~~~~~dllVmG~---~~--~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~~~~~ 186 (200)
+..++|+..|++.++|+|++|. |. +-+..+.. ..+..-.+|+..-+|-.=++..++..+..
T Consensus 39 ~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~-----------~i~lLRryClgdkP~~le~lSD~s~~f~~ 104 (646)
T KOG2310|consen 39 VTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHR-----------CLELLRRYCLGDKPVQLEILSDQSVNFGN 104 (646)
T ss_pred HHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHH-----------HHHHHHHHccCCCceeeEEecccceeccc
Confidence 4689999999999999999996 22 11111110 00023345555667877777777664433
No 230
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=21.25 E-value=1.3e+02 Score=25.70 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=10.7
Q ss_pred ChHHHHHcCCCccEEEEecC
Q 045490 161 DTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~ 180 (200)
+++..+.-...+|++.|+-.
T Consensus 101 D~ak~vA~~rgip~I~IPTT 120 (350)
T PRK00843 101 DVAKLAAYRLGIPFISVPTA 120 (350)
T ss_pred HHHHHHHHhcCCCEEEeCCC
Confidence 45555544455666666543
No 231
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=21.10 E-value=1.9e+02 Score=22.85 Aligned_cols=37 Identities=8% Similarity=-0.019 Sum_probs=27.6
Q ss_pred CCCeEEEEECCCcchHH-HHHHHHHhcCCCCCeEEEEEe
Q 045490 7 QSRKVMVIADPTRESAG-ALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~-al~~A~~la~~~~a~l~llhV 44 (200)
..++|++++-++-.+.+ +++.+-.+. +.+.+|.++--
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~-k~G~~V~vv~T 41 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLV-DEGAEVTPIVS 41 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHH-hCcCEEEEEEC
Confidence 46799999999999999 587776664 45777665443
No 232
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.91 E-value=3.3e+02 Score=23.61 Aligned_cols=72 Identities=11% Similarity=0.100 Sum_probs=41.9
Q ss_pred EEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccc----cccCCCccCC-CCcChHHHHHcCCCccEEEEecCC
Q 045490 109 VHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGY----RRAGGSLRGS-KGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 109 ~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~----~~~~~~~~~~-~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
.-.....-..++++.|++.+...|+.-+.+.... +.|. ...+-+++|. .+......+.+++++||.+-=+..
T Consensus 21 fN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg 97 (345)
T cd00946 21 VNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAF-YAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHC 97 (345)
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhh-cCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3344445799999999999999999987651110 0010 0000000000 123567788889999988764443
No 233
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=20.88 E-value=1.9e+02 Score=23.67 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=22.4
Q ss_pred CeEEEEECCCc--chHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTR--ESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~--~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+||++.+++.- +..+++..|-.+ + +-+|+++..-
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-r--g~~v~~~~~~ 36 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-R--GHEVTFITSG 36 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-c--cCceEEEEcC
Confidence 48999997643 356777777667 3 4567766653
No 234
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=20.59 E-value=4.6e+02 Score=21.20 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=20.7
Q ss_pred EecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 110 HTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 110 ~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
-+.|. +...-+..+.+-++|.+|+|+.
T Consensus 173 eVDGG-I~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 173 EVDGS-CNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred EEECC-CCHHHHHHHHHcCCCEEEEChH
Confidence 45677 6666666777789999999964
No 235
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=20.49 E-value=4.1e+02 Score=20.49 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=21.8
Q ss_pred EEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 12 MVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 12 lVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+|++.+..+|..++.++.. .+..|..+|+.
T Consensus 2 vv~lSGG~DSs~~~~~~~~----~g~~v~~~~~~ 31 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKD----EGYEVHAITFD 31 (201)
T ss_pred EEEeccHHHHHHHHHHHHH----cCCcEEEEEEE
Confidence 6788888888877766544 24578888884
No 236
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.46 E-value=1.9e+02 Score=25.49 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=9.2
Q ss_pred HhcCCCCCeEEEEEe
Q 045490 30 SHVLLEEDELVLLHV 44 (200)
Q Consensus 30 ~la~~~~a~l~llhV 44 (200)
..+....+.++++|-
T Consensus 18 ~~~~~i~~~~~l~Hg 32 (430)
T cd01981 18 RVASSFKNVHAVMHA 32 (430)
T ss_pred HHHhhcCCcEEEEeC
Confidence 333445567777777
No 237
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=20.43 E-value=3.9e+02 Score=20.21 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHc--CCCEEEEecCC-CCCcccccccccCCCccCCCCcC-hHH
Q 045490 89 EEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAH--GVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVD-TAE 164 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~--~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s-~~~ 164 (200)
+.+.+.|++...+.+++++ ....+ -..+|++.+++. ++|-||+-... .. . | .-.
T Consensus 29 ~~i~~~~~~~a~~~g~~v~--~~QSN-~EGelId~I~~a~~~~dgiiINpga~TH-----t--------------SiAl~ 86 (146)
T PRK05395 29 ADIEALLEEEAAELGVELE--FFQSN-HEGELIDRIHEARDGADGIIINPGAYTH-----T--------------SVALR 86 (146)
T ss_pred HHHHHHHHHHHHHcCCEEE--EEeeC-cHHHHHHHHHhcccCCcEEEECchHHHH-----H--------------HHHHH
Confidence 3333333333333346664 44444 566677777653 58999996533 00 0 1 123
Q ss_pred HHHcCCCccEEEEe
Q 045490 165 YLIQNSKCNCVGVQ 178 (200)
Q Consensus 165 ~vl~~s~~pVLvv~ 178 (200)
..+.-.++|++=|.
T Consensus 87 DAl~~~~~P~VEVH 100 (146)
T PRK05395 87 DALAAVSIPVIEVH 100 (146)
T ss_pred HHHHcCCCCEEEEe
Confidence 45566789998773
No 238
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=20.41 E-value=2.6e+02 Score=18.42 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEec
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQR 179 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~ 179 (200)
..+.|.+.+++++++.|.+|..+........ .+. -...+.+-++.++||.++..
T Consensus 39 ~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~------~~~----~~l~~~l~~~~~~pv~~~nD 92 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNMNGTASR------ETE----EAFAELLKERFNLPVVLVDE 92 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCcCH------HHH----HHHHHHHHHhhCCcEEEEeC
Confidence 4566666666777888888865521110000 000 03445555567899998854
No 239
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=20.34 E-value=2.1e+02 Score=21.50 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHc--CCCEEEEecCCCCCcccccccccCCCccCCCCcC-hH
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAH--GVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVD-TA 163 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~--~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s-~~ 163 (200)
.++.+.+.|++...+.+++++ ....+ -..+|++.+++. ++|-+|+-... +. .. | .-
T Consensus 26 tl~~i~~~~~~~a~~~g~~v~--~~QSN-~EGelid~I~~a~~~~dgiIINpga-~t---ht--------------S~Ai 84 (140)
T PF01220_consen 26 TLEDIEQKCKETAAELGVEVE--FFQSN-HEGELIDWIHEARDDVDGIIINPGA-YT---HT--------------SIAI 84 (140)
T ss_dssp HHHHHHHHHHHHHHHTTEEEE--EEE-S-SHHHHHHHHHHHTCTTSEEEEE-GG-GG---HT---------------HHH
T ss_pred CHHHHHHHHHHHHHHCCCeEE--EEecC-CHHHHHHHHHHHHhhCCEEEEccch-hc---cc--------------cHHH
Confidence 444444444444434456664 45555 566777777663 58999996533 00 00 1 22
Q ss_pred HHHHcCCCccEEEEe
Q 045490 164 EYLIQNSKCNCVGVQ 178 (200)
Q Consensus 164 ~~vl~~s~~pVLvv~ 178 (200)
...+...++|++=|.
T Consensus 85 ~DAl~~~~~P~vEVH 99 (140)
T PF01220_consen 85 RDALKAISIPVVEVH 99 (140)
T ss_dssp HHHHHCCTS-EEEEE
T ss_pred HHHHHcCCCCEEEEE
Confidence 346677899998884
No 240
>PRK00861 putative lipid kinase; Reviewed
Probab=20.14 E-value=5e+02 Score=21.41 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=18.1
Q ss_pred EEEEEecCCcHHHHHHHHHHHcCCCEEEEec
Q 045490 106 VEKVHTESGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 106 v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
++....+...-+..+++.+...++|+||+..
T Consensus 35 ~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~G 65 (300)
T PRK00861 35 LDIYLTTPEIGADQLAQEAIERGAELIIASG 65 (300)
T ss_pred eEEEEccCCCCHHHHHHHHHhcCCCEEEEEC
Confidence 3334443333466777777667788876644
No 241
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=20.13 E-value=1.2e+02 Score=22.69 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC----CCC-cc-cccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRR----SLS-NA-ILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~----~~~-~~-~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
..+.|.+.+++++++.||+|-.- ... +. ..- ..++.+-++.++||.++..+
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~--------------~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELAR--------------KFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHH--------------HHHHHHHHhcCCCEEEEcCc
Confidence 58899999999999999999632 111 11 011 35667777788999998543
No 242
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=20.08 E-value=4e+02 Score=20.27 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCC-cHHHHHHHHHHHcCCCEEEE-ec--CC--CCCcccccccccCCCccCCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESG-NKAAIILSQSTAHGVDLLII-GQ--RR--SLSNAILGYRRAGGSLRGSK 158 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~-~~~~~I~~~a~~~~~dllVm-G~--~~--~~~~~~~G~~~~~~~~~~~~ 158 (200)
.++++-+.+.++..+...+ ++++..+.|. ..-=...+.++..++|-||. |. +| ...+++.+
T Consensus 28 d~ll~gA~~~l~~~G~~~~-~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~------------ 94 (152)
T COG0054 28 DALLEGAVDALKRHGADVD-NIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVAN------------ 94 (152)
T ss_pred HHHHHHHHHHHHHcCCCcc-cceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHH------------
Confidence 4667777777766554433 3445666665 33344556666777887765 65 55 33344444
Q ss_pred CcChHHHHHc---CCCccEEE
Q 045490 159 GVDTAEYLIQ---NSKCNCVG 176 (200)
Q Consensus 159 ~~s~~~~vl~---~s~~pVLv 176 (200)
.++..+.+ +..+||..
T Consensus 95 --~~~~gl~~vsl~~~~PV~~ 113 (152)
T COG0054 95 --EVARGLMDVSLETGVPVTF 113 (152)
T ss_pred --HHHHHHHHHHHhhCCCeEe
Confidence 45554444 56888875
No 243
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.04 E-value=2e+02 Score=25.46 Aligned_cols=11 Identities=0% Similarity=-0.043 Sum_probs=6.4
Q ss_pred CCCEEEEecCC
Q 045490 128 GVDLLIIGQRR 138 (200)
Q Consensus 128 ~~dllVmG~~~ 138 (200)
++.++.+.+.+
T Consensus 120 ~~~vi~v~tpg 130 (435)
T cd01974 120 DFPVPFANTPS 130 (435)
T ss_pred CCeEEEecCCC
Confidence 46666665544
Done!