Query 045490
Match_columns 200
No_of_seqs 111 out of 1509
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 03:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dlo_A Universal stress protei 99.9 1.7E-24 5.9E-29 163.9 12.6 133 4-178 20-155 (155)
2 3s3t_A Nucleotide-binding prot 99.9 1.1E-24 3.8E-29 161.9 9.4 141 5-178 2-146 (146)
3 3tnj_A Universal stress protei 99.9 4.6E-24 1.6E-28 159.5 11.2 143 6-181 4-149 (150)
4 3hgm_A Universal stress protei 99.9 1.8E-24 6E-29 160.9 8.2 142 7-177 1-147 (147)
5 1tq8_A Hypothetical protein RV 99.9 1.9E-23 6.6E-28 159.4 13.3 144 2-180 11-159 (163)
6 1mjh_A Protein (ATP-binding do 99.9 2.2E-23 7.6E-28 157.8 12.7 151 6-180 3-160 (162)
7 3fdx_A Putative filament prote 99.9 1E-23 3.5E-28 156.2 10.3 140 8-178 1-143 (143)
8 2dum_A Hypothetical protein PH 99.9 3.4E-23 1.2E-27 158.0 13.4 155 6-184 3-161 (170)
9 3fg9_A Protein of universal st 99.9 2.1E-23 7.2E-28 157.1 11.6 139 4-178 11-156 (156)
10 2z08_A Universal stress protei 99.9 4.4E-23 1.5E-27 152.1 9.0 134 7-178 1-137 (137)
11 3idf_A USP-like protein; unive 99.9 3.2E-23 1.1E-27 152.8 7.0 134 8-178 1-138 (138)
12 2gm3_A Unknown protein; AT3G01 99.9 5E-22 1.7E-26 152.3 11.0 146 6-182 3-166 (175)
13 1jmv_A USPA, universal stress 99.8 8.1E-21 2.8E-25 140.3 10.6 138 7-181 1-140 (141)
14 3loq_A Universal stress protei 99.8 2.3E-20 7.9E-25 154.1 8.9 151 5-190 19-177 (294)
15 3olq_A Universal stress protei 99.8 5.1E-20 1.8E-24 153.3 10.3 150 6-190 5-163 (319)
16 1q77_A Hypothetical protein AQ 99.8 1.5E-19 5.2E-24 133.0 11.1 135 6-178 2-138 (138)
17 3cis_A Uncharacterized protein 99.8 1.7E-19 5.8E-24 150.0 12.3 145 5-181 16-163 (309)
18 3mt0_A Uncharacterized protein 99.8 9.2E-20 3.1E-24 150.3 10.3 137 7-182 133-279 (290)
19 3mt0_A Uncharacterized protein 99.8 4.8E-19 1.6E-23 146.0 14.0 133 6-190 5-141 (290)
20 3ab8_A Putative uncharacterize 99.8 4.4E-19 1.5E-23 144.3 10.3 150 9-190 1-161 (268)
21 3loq_A Universal stress protei 99.8 1.9E-18 6.6E-23 142.5 12.7 124 6-182 168-293 (294)
22 3cis_A Uncharacterized protein 99.8 2.2E-18 7.5E-23 143.3 12.5 137 6-180 169-307 (309)
23 3olq_A Universal stress protei 99.8 1.3E-18 4.4E-23 144.8 10.8 147 6-185 154-311 (319)
24 3ab8_A Putative uncharacterize 99.7 4.4E-17 1.5E-21 132.4 10.4 116 7-178 153-268 (268)
25 1wy5_A TILS, hypothetical UPF0 94.0 0.89 3E-05 37.3 11.9 96 7-138 23-135 (317)
26 3a2k_A TRNA(Ile)-lysidine synt 92.9 0.62 2.1E-05 40.4 9.8 97 7-138 17-129 (464)
27 2iel_A Hypothetical protein TT 91.5 2.9 0.0001 30.1 11.4 127 9-177 2-133 (138)
28 4b4k_A N5-carboxyaminoimidazol 90.4 3.7 0.00013 31.0 10.2 75 84-182 34-111 (181)
29 3g40_A Na-K-CL cotransporter; 90.4 6.1 0.00021 32.2 12.2 123 9-182 21-149 (294)
30 3ih5_A Electron transfer flavo 90.1 0.39 1.3E-05 37.5 4.8 37 8-44 3-44 (217)
31 4grd_A N5-CAIR mutase, phospho 89.0 3.7 0.00012 30.8 9.2 75 84-182 24-101 (173)
32 2ywx_A Phosphoribosylaminoimid 88.7 4.4 0.00015 29.9 9.4 71 85-179 12-82 (157)
33 3kuu_A Phosphoribosylaminoimid 87.7 5.4 0.00018 29.9 9.4 75 84-182 24-101 (174)
34 1xmp_A PURE, phosphoribosylami 87.7 5.9 0.0002 29.6 9.6 74 84-181 23-99 (170)
35 1o97_C Electron transferring f 87.6 3.2 0.00011 33.3 8.8 86 14-138 32-122 (264)
36 3trh_A Phosphoribosylaminoimid 87.4 5.3 0.00018 29.8 9.2 74 85-182 19-95 (169)
37 3oow_A Phosphoribosylaminoimid 87.1 7.6 0.00026 28.9 10.3 74 85-182 18-94 (166)
38 2xry_A Deoxyribodipyrimidine p 86.6 1.6 5.6E-05 37.9 7.0 92 16-138 46-137 (482)
39 3rg8_A Phosphoribosylaminoimid 85.3 6.6 0.00023 29.0 8.7 73 85-181 15-91 (159)
40 1u11_A PURE (N5-carboxyaminoim 85.2 7 0.00024 29.5 9.0 74 84-181 33-109 (182)
41 3ors_A N5-carboxyaminoimidazol 84.8 8.4 0.00029 28.6 9.1 74 85-182 16-92 (163)
42 1zun_A Sulfate adenylyltransfe 84.4 4.2 0.00014 33.5 8.2 38 8-45 46-83 (325)
43 1efp_B ETF, protein (electron 84.4 12 0.00043 29.5 10.7 82 17-138 35-123 (252)
44 1o4v_A Phosphoribosylaminoimid 83.7 11 0.00037 28.5 9.4 73 85-181 26-101 (183)
45 3lp6_A Phosphoribosylaminoimid 83.5 8.4 0.00029 28.9 8.7 74 84-181 19-95 (174)
46 1efv_B Electron transfer flavo 81.5 8.5 0.00029 30.6 8.7 80 19-138 40-126 (255)
47 3umv_A Deoxyribodipyrimidine p 80.6 3.2 0.00011 36.4 6.4 89 16-134 47-135 (506)
48 3g40_A Na-K-CL cotransporter; 78.8 2 6.8E-05 35.0 4.1 103 21-182 178-280 (294)
49 1ni5_A Putative cell cycle pro 77.0 12 0.00042 31.8 8.9 39 7-45 12-51 (433)
50 1k92_A Argininosuccinate synth 76.2 36 0.0012 29.4 11.5 36 6-45 8-43 (455)
51 1sur_A PAPS reductase; assimil 74.2 26 0.00087 26.4 10.5 33 9-45 45-77 (215)
52 1u3d_A Cryptochrome 1 apoprote 74.0 21 0.00071 31.1 9.7 126 8-180 11-139 (509)
53 4ds3_A Phosphoribosylglycinami 72.9 22 0.00074 27.3 8.5 89 5-138 4-96 (209)
54 3bl5_A Queuosine biosynthesis 72.9 27 0.00092 26.1 10.5 34 8-45 3-36 (219)
55 2hma_A Probable tRNA (5-methyl 72.0 19 0.00065 30.1 8.7 35 7-45 8-42 (376)
56 1iv0_A Hypothetical protein; r 71.1 9.7 0.00033 25.6 5.4 47 116-178 39-92 (98)
57 2der_A TRNA-specific 2-thiouri 70.7 28 0.00096 29.2 9.4 36 6-45 15-50 (380)
58 1np7_A DNA photolyase; protein 70.7 29 0.00099 30.0 9.8 101 10-137 7-109 (489)
59 2wq7_A RE11660P; lyase-DNA com 70.5 13 0.00044 32.8 7.6 100 10-137 30-133 (543)
60 3kcq_A Phosphoribosylglycinami 70.1 28 0.00097 26.7 8.6 22 117-138 71-92 (215)
61 2nz2_A Argininosuccinate synth 69.7 25 0.00085 29.9 8.9 34 8-45 5-38 (413)
62 1qv9_A F420-dependent methylen 68.9 6.9 0.00024 31.0 4.8 47 119-181 55-101 (283)
63 2oq2_A Phosphoadenosine phosph 68.9 40 0.0014 26.4 9.6 37 8-45 41-77 (261)
64 3da8_A Probable 5'-phosphoribo 67.5 28 0.00095 26.8 8.1 86 6-138 10-99 (215)
65 1vbk_A Hypothetical protein PH 66.8 49 0.0017 26.7 10.1 32 8-44 179-210 (307)
66 1kor_A Argininosuccinate synth 66.5 36 0.0012 28.7 9.2 34 9-45 1-34 (400)
67 3tvs_A Cryptochrome-1; circadi 66.3 7.4 0.00025 34.4 5.1 95 16-136 13-107 (538)
68 2ywb_A GMP synthase [glutamine 66.0 51 0.0018 28.5 10.4 33 9-45 210-242 (503)
69 1vl2_A Argininosuccinate synth 64.6 43 0.0015 28.6 9.3 36 6-45 12-47 (421)
70 2c5s_A THII, probable thiamine 64.1 48 0.0016 27.9 9.6 34 8-45 187-220 (413)
71 1owl_A Photolyase, deoxyribodi 61.0 21 0.00073 30.8 7.0 90 16-137 12-101 (484)
72 2pg3_A Queuosine biosynthesis 60.6 53 0.0018 24.9 10.7 33 9-45 3-35 (232)
73 3tqr_A Phosphoribosylglycinami 59.7 57 0.0019 25.0 9.3 35 8-44 5-39 (215)
74 2wsi_A FAD synthetase; transfe 58.8 53 0.0018 26.5 8.7 92 9-138 54-167 (306)
75 2h31_A Multifunctional protein 58.2 42 0.0014 28.7 8.1 72 85-180 278-353 (425)
76 2j4d_A Cryptochrome 3, cryptoc 57.6 71 0.0024 27.9 9.8 103 9-137 40-144 (525)
77 2pju_A Propionate catabolism o 56.3 28 0.00095 27.0 6.2 22 161-182 72-93 (225)
78 1g63_A Epidermin modifying enz 55.9 15 0.00051 27.5 4.5 37 7-44 1-37 (181)
79 2q5c_A NTRC family transcripti 55.5 50 0.0017 24.7 7.5 22 161-182 60-81 (196)
80 2dpl_A GMP synthetase, GMP syn 53.1 71 0.0024 25.7 8.5 35 8-45 20-54 (308)
81 3p9x_A Phosphoribosylglycinami 51.4 79 0.0027 24.1 9.4 85 9-138 3-91 (211)
82 2l69_A Rossmann 2X3 fold prote 50.9 53 0.0018 22.0 6.4 39 83-126 85-123 (134)
83 3tqi_A GMP synthase [glutamine 50.7 17 0.00058 31.9 4.6 34 9-45 231-264 (527)
84 3fy4_A 6-4 photolyase; DNA rep 50.5 29 0.001 30.5 6.1 106 8-136 4-111 (537)
85 3qjg_A Epidermin biosynthesis 49.8 24 0.00082 26.3 4.7 38 6-44 3-40 (175)
86 1ccw_A Protein (glutamate muta 48.7 41 0.0014 23.5 5.7 34 103-138 31-64 (137)
87 2yxb_A Coenzyme B12-dependent 47.1 40 0.0014 24.4 5.6 34 103-138 46-79 (161)
88 2e0i_A 432AA long hypothetical 46.0 35 0.0012 29.1 5.8 117 16-180 10-127 (440)
89 2l69_A Rossmann 2X3 fold prote 44.8 27 0.00093 23.4 3.8 48 85-137 12-59 (134)
90 1y80_A Predicted cobalamin bin 42.4 63 0.0022 24.1 6.2 34 103-138 116-149 (210)
91 3tqk_A Phospho-2-dehydro-3-deo 42.2 1.5E+02 0.005 24.6 9.2 134 9-182 49-188 (346)
92 1nu0_A Hypothetical protein YQ 41.9 17 0.00059 26.0 2.7 50 116-180 41-97 (138)
93 3zqu_A Probable aromatic acid 41.8 45 0.0015 25.5 5.3 36 8-44 4-39 (209)
94 1vhx_A Putative holliday junct 41.6 6.8 0.00023 28.5 0.5 21 116-136 43-63 (150)
95 1dnp_A DNA photolyase; DNA rep 40.8 16 0.00056 31.5 2.9 45 85-136 55-103 (471)
96 1mvl_A PPC decarboxylase athal 39.8 35 0.0012 26.1 4.4 37 6-44 17-53 (209)
97 2qv7_A Diacylglycerol kinase D 39.5 1E+02 0.0035 24.8 7.5 50 85-138 41-91 (337)
98 2o8v_A Phosphoadenosine phosph 38.9 1.3E+02 0.0045 23.1 10.4 32 9-44 46-77 (252)
99 3s40_A Diacylglycerol kinase; 38.4 1.3E+02 0.0046 23.7 7.9 47 85-136 25-71 (304)
100 3rjz_A N-type ATP pyrophosphat 36.7 1.5E+02 0.005 23.0 9.2 92 9-136 5-98 (237)
101 2j07_A Deoxyribodipyrimidine p 36.2 75 0.0026 26.8 6.3 86 16-137 11-96 (420)
102 1sbz_A Probable aromatic acid 34.8 68 0.0023 24.2 5.3 36 9-44 1-36 (197)
103 1jq5_A Glycerol dehydrogenase; 34.1 77 0.0026 26.0 6.0 72 87-182 46-121 (370)
104 2ejb_A Probable aromatic acid 33.6 59 0.002 24.3 4.7 35 9-44 2-36 (189)
105 3k32_A Uncharacterized protein 33.3 45 0.0015 24.9 4.0 36 6-45 4-39 (203)
106 3nbm_A PTS system, lactose-spe 33.2 69 0.0024 21.6 4.6 36 127-180 52-87 (108)
107 2wte_A CSA3; antiviral protein 32.6 1.7E+02 0.0059 22.6 11.2 89 7-133 7-98 (244)
108 3u7q_B Nitrogenase molybdenum- 32.6 2.5E+02 0.0085 24.4 10.0 51 110-182 421-474 (523)
109 1meo_A Phosophoribosylglycinam 32.5 1.6E+02 0.0055 22.2 11.5 35 9-44 1-35 (209)
110 1xw8_A UPF0271 protein YBGL; N 32.5 45 0.0015 26.4 3.9 65 87-177 85-158 (252)
111 3gxq_A Putative regulator of t 32.1 36 0.0012 19.3 2.4 26 106-131 12-37 (54)
112 1n8f_A DAHP synthetase; (beta/ 30.9 2.3E+02 0.0078 23.5 10.6 132 9-182 52-191 (350)
113 4f2d_A L-arabinose isomerase; 29.4 94 0.0032 27.0 5.9 47 117-181 60-107 (500)
114 1p3y_1 MRSD protein; flavoprot 29.4 58 0.002 24.5 4.0 37 7-44 7-43 (194)
115 3ff4_A Uncharacterized protein 29.0 1E+02 0.0034 21.2 4.9 23 109-132 87-109 (122)
116 2dfa_A Hypothetical UPF0271 pr 28.9 46 0.0016 26.3 3.4 120 11-177 31-163 (250)
117 1qzu_A Hypothetical protein MD 28.6 59 0.002 24.7 4.0 39 6-44 17-55 (206)
118 2i2x_B MTAC, methyltransferase 28.6 1.1E+02 0.0039 23.7 5.8 34 103-138 151-184 (258)
119 1v6t_A Hypothetical UPF0271 pr 27.0 47 0.0016 26.3 3.2 120 11-177 31-163 (255)
120 1o97_D Electron transferring f 26.3 59 0.002 26.5 3.8 34 10-44 2-41 (320)
121 3m47_A Orotidine 5'-phosphate 26.1 1.6E+02 0.0056 22.4 6.2 32 9-45 13-44 (228)
122 3n0v_A Formyltetrahydrofolate 26.1 2.5E+02 0.0085 22.3 11.2 37 7-44 89-125 (286)
123 3qk7_A Transcriptional regulat 25.9 2.2E+02 0.0075 21.7 9.5 74 85-182 26-99 (294)
124 3lou_A Formyltetrahydrofolate 25.9 2.5E+02 0.0086 22.4 11.1 37 7-44 94-130 (292)
125 3exr_A RMPD (hexulose-6-phosph 25.7 1.8E+02 0.006 22.0 6.3 32 8-44 5-36 (221)
126 3o1l_A Formyltetrahydrofolate 24.3 2.8E+02 0.0095 22.3 10.9 85 7-138 104-191 (302)
127 1gpm_A GMP synthetase, XMP ami 24.2 1.6E+02 0.0054 25.6 6.4 34 9-45 228-261 (525)
128 3of5_A Dethiobiotin synthetase 24.2 76 0.0026 24.2 3.9 16 163-178 132-147 (228)
129 1jkx_A GART;, phosphoribosylgl 23.7 2.4E+02 0.0081 21.3 10.3 22 117-138 68-89 (212)
130 3inp_A D-ribulose-phosphate 3- 23.7 97 0.0033 24.2 4.5 45 86-136 180-224 (246)
131 3f6p_A Transcriptional regulat 23.4 1.5E+02 0.0052 18.9 8.8 50 116-182 35-84 (120)
132 3t8y_A CHEB, chemotaxis respon 23.3 1.8E+02 0.0063 19.9 7.9 75 85-182 35-109 (164)
133 3cnb_A DNA-binding response re 22.7 1.7E+02 0.0056 19.1 5.9 49 118-182 44-95 (143)
134 2bon_A Lipid kinase; DAG kinas 22.5 3E+02 0.01 22.0 7.6 48 87-138 45-93 (332)
135 3fet_A Electron transfer flavo 22.4 42 0.0014 24.5 2.0 31 9-44 4-34 (166)
136 2p0y_A Hypothetical protein LP 22.3 71 0.0024 26.4 3.6 47 116-179 178-228 (341)
137 2ppv_A Uncharacterized protein 21.6 78 0.0027 26.1 3.6 48 116-180 167-218 (332)
138 3fni_A Putative diflavin flavo 20.8 2.3E+02 0.0077 19.9 6.0 47 85-138 19-66 (159)
139 2o2z_A Hypothetical protein; s 20.5 82 0.0028 25.8 3.6 48 116-180 168-219 (323)
140 2f6u_A GGGPS, (S)-3-O-geranylg 20.5 88 0.003 24.3 3.6 46 118-180 23-70 (234)
141 2ywr_A Phosphoribosylglycinami 20.0 2.8E+02 0.0097 20.8 11.9 22 117-138 69-90 (216)
No 1
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.92 E-value=1.7e-24 Score=163.90 Aligned_cols=133 Identities=11% Similarity=0.104 Sum_probs=106.7
Q ss_pred CCCCCCeEEEEECC-CcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccccccc
Q 045490 4 GTPQSRKVMVIADP-TRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAP 82 (200)
Q Consensus 4 ~~~~~~~IlVavD~-s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (200)
..||+++||||+|+ |+.+..++++|+.+++..+++|+++||.+... .......+
T Consensus 20 ~~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~-------------------------~~~~~~~~ 74 (155)
T 3dlo_A 20 QGMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGG-------------------------RTKDEDII 74 (155)
T ss_dssp --CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCST-------------------------TSCHHHHH
T ss_pred cccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCC-------------------------cccHHHHH
Confidence 45899999999999 99999999999999999999999999975321 00112223
Q ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCc
Q 045490 83 GGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
..++.++++.+.+.+.+. .+++++.+..|+ +.+.|++++++.++||||||+++ .+.++++|
T Consensus 75 ~~~~~l~~~~~~~~~~g~--~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lG-------------- 137 (155)
T 3dlo_A 75 EAKETLSWAVSIIRKEGA--EGEEHLLVRGKE-PPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFG-------------- 137 (155)
T ss_dssp HHHHHHHHHHHHHHHTTC--CEEEEEEESSSC-HHHHHHHHHHHTTCSEEEEECCEECTTSCEECC--------------
T ss_pred HHHHHHHHHHHHHHhcCC--CceEEEEecCCC-HHHHHHHHHHHcCCCEEEECCCCCCCCCCEEec--------------
Confidence 456788888888777553 355545566787 99999999999999999999986 56667777
Q ss_pred ChHHHHHcCCCccEEEEe
Q 045490 161 DTAEYLIQNSKCNCVGVQ 178 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~ 178 (200)
|++++|+++++||||+||
T Consensus 138 Sv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 138 SVARDVILKANKPVICIK 155 (155)
T ss_dssp HHHHHHHHHCSSCEEEEC
T ss_pred cHHHHHHHhCCCCEEEeC
Confidence 899999999999999996
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.91 E-value=1.1e-24 Score=161.94 Aligned_cols=141 Identities=16% Similarity=0.249 Sum_probs=105.3
Q ss_pred CCCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccch
Q 045490 5 TPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGG 84 (200)
Q Consensus 5 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (200)
.+|+++||||+|+|+.+..+++||+.+++..+++|+++||.++.... .... ............+..
T Consensus 2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~----------~~~~----~~~~~~~~~~~~~~~ 67 (146)
T 3s3t_A 2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYH----------TPAL----DPVLSELLDAEAAHA 67 (146)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCC----------CGGG----HHHHHHHHHHHHHHH
T ss_pred CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc----------cccc----ccccHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999998654310 0000 000000011112234
Q ss_pred HHHHHHHHHHHHHhCCCcce-EEEEEEecCCcHHHHHHH-HHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCc
Q 045490 85 EDFLEEMKQACEVAKPKLRV-HVEKVHTESGNKAAIILS-QSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v-~v~~~~~~g~~~~~~I~~-~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
++.++++.+.+.+. ++ ++++++..|+ +.+.|++ ++++.++||||||+++ .+.++++|
T Consensus 68 ~~~l~~~~~~~~~~----g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~G-------------- 128 (146)
T 3s3t_A 68 KDAMRQRQQFVATT----SAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVG-------------- 128 (146)
T ss_dssp HHHHHHHHHHHTTS----SCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSC--------------
T ss_pred HHHHHHHHHHHHhc----CCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEc--------------
Confidence 45566666655433 56 6777888998 9999999 9999999999999987 55556666
Q ss_pred ChHHHHHcCCCccEEEEe
Q 045490 161 DTAEYLIQNSKCNCVGVQ 178 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~ 178 (200)
|++++|+++++||||+||
T Consensus 129 s~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 129 STTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHHHHHHCSSEEEEEC
T ss_pred chHHHHhccCCCCEEEeC
Confidence 999999999999999996
No 3
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.91 E-value=4.6e-24 Score=159.46 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=95.1
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
|++++||||+|+|+.+..+++||+.+++..+++|+++||.++...... .+.... .........+..+
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~--~~~~~~-----------~~~~~~~~~~~~~ 70 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDT--PYGTAI-----------PLDTETTYDAMLD 70 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC----------CTTCC-----------CSSSCCCHHHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCcccccc--cccccc-----------CcCHHHHHHHHHH
Confidence 679999999999999999999999999999999999999865421000 000000 0000001111112
Q ss_pred HHHHHHHHHHHHhCCCcceE-EEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcCh
Q 045490 86 DFLEEMKQACEVAKPKLRVH-VEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVDT 162 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~-v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s~ 162 (200)
+..+.+.+.+++.+ ++ +++++..|+ +.+.|+++++++++||||||+++ .+. .++| |+
T Consensus 71 ~~~~~l~~~~~~~~----~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~G--------------s~ 130 (150)
T 3tnj_A 71 VEKQKLSQIGNTLG----IDPAHRWLVWGE-PREEIIRIAEQENVDLIVVGSHGRHGLA-LLLG--------------ST 130 (150)
T ss_dssp HHHHHHHHHHHHHT----CCGGGEEEEESC-HHHHHHHHHHHTTCSEEEEEEC---------CC--------------CH
T ss_pred HHHHHHHHHHHHcC----CCcceEEEecCC-HHHHHHHHHHHcCCCEEEEecCCCCCcC-eEec--------------ch
Confidence 22333333333333 33 344677888 99999999999999999999987 455 6666 99
Q ss_pred HHHHHcCCCccEEEEecCC
Q 045490 163 AEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 163 ~~~vl~~s~~pVLvv~~~~ 181 (200)
+++|+++++||||+|+.+.
T Consensus 131 ~~~vl~~~~~pVlvv~~~~ 149 (150)
T 3tnj_A 131 ANSVLHYAKCDVLAVRLRD 149 (150)
T ss_dssp HHHHHHHCSSEEEEEECCC
T ss_pred HHHHHHhCCCCEEEEeCCC
Confidence 9999999999999998764
No 4
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.91 E-value=1.8e-24 Score=160.87 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=105.4
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHH
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGED 86 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
|+++||||+|+|+.+..+++||+.+++..+++|+++||.++.. .+..+........ .........+..++
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 70 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHS---LLEASLSMARPEQ-------LDIPDDALKDYATE 70 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHH---HHHHTBSSCCCGG-------GCCCTTHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcc---cccccccccChhh-------hhhHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999986431 0001000000000 00111122234567
Q ss_pred HHHHHHHHHHHhCCCcceEE---EEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcC
Q 045490 87 FLEEMKQACEVAKPKLRVHV---EKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v---~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
.++++.+.+.+.+ +++ ++++..|+ +.+.|+++++++++||||||+++ .+.++++| |
T Consensus 71 ~l~~~~~~~~~~g----~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~G--------------s 131 (147)
T 3hgm_A 71 IAVQAKTRATELG----VPADKVRAFVKGGR-PSRTIVRFARKRECDLVVIGAQGTNGDKSLLLG--------------S 131 (147)
T ss_dssp HHHHHHHHHHHTT----CCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCC--------------H
T ss_pred HHHHHHHHHHhcC----CCccceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCCccccceeec--------------c
Confidence 7778887777654 444 66788898 99999999999999999999987 55666666 8
Q ss_pred hHHHHHcCCCccEEEE
Q 045490 162 TAEYLIQNSKCNCVGV 177 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv 177 (200)
++++++++++||||+|
T Consensus 132 ~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 132 VAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHHHCSSCEEEC
T ss_pred HHHHHHhhCCCCEEEC
Confidence 9999999999999986
No 5
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.90 E-value=1.9e-23 Score=159.36 Aligned_cols=144 Identities=15% Similarity=0.183 Sum_probs=106.1
Q ss_pred CCCCCCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEE--EeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccc
Q 045490 2 EAGTPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLL--HVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGA 79 (200)
Q Consensus 2 ~~~~~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~ll--hV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (200)
+....++++||||+|+|+.+..|++||+.+++ .+++|+++ ||.++.... .. .+. . .......
T Consensus 11 ~~~~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~---~~---~~~-------~--~~~~~~~ 74 (163)
T 1tq8_A 11 HMSLSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDAR---AA---DIL-------K--DESYKVT 74 (163)
T ss_dssp --CCCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC----------------------------------
T ss_pred ccccccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccc---cc---ccc-------c--cHHHHHH
Confidence 34557899999999999999999999999999 99999999 886533210 00 000 0 0011122
Q ss_pred cccchHHHHHHHHHHHHHhCCCcceE-EEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccC
Q 045490 80 AAPGGEDFLEEMKQACEVAKPKLRVH-VEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRG 156 (200)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~v~-v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~ 156 (200)
..+..++.++++.+.+.+. +++ +++++..|+ +.+.|++++++.++||||||+++ .+.++++|
T Consensus 75 ~~~~~~~~l~~~~~~~~~~----gv~~v~~~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lG---------- 139 (163)
T 1tq8_A 75 GTAPIYEILHDAKERAHNA----GAKNVEERPIVGA-PVDALVNLADEEKADLLVVGNVGLSTIAGRLLG---------- 139 (163)
T ss_dssp -CCTHHHHHHHHHHHHHTT----TCCEEEEEEECSS-HHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTB----------
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCeEEEEEecCC-HHHHHHHHHHhcCCCEEEECCCCCCcccceeec----------
Confidence 3345667888888777653 465 777888897 99999999999999999999986 56667777
Q ss_pred CCCcChHHHHHcCCCccEEEEecC
Q 045490 157 SKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 157 ~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
|++++|+++++||||+|+.+
T Consensus 140 ----Sva~~vl~~a~~PVlvV~~~ 159 (163)
T 1tq8_A 140 ----SVPANVSRRAKVDVLIVHTT 159 (163)
T ss_dssp ----BHHHHHHHHTTCEEEEECCC
T ss_pred ----cHHHHHHHhCCCCEEEEeCC
Confidence 89999999999999999854
No 6
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.90 E-value=2.2e-23 Score=157.76 Aligned_cols=151 Identities=20% Similarity=0.261 Sum_probs=106.1
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCC-CcccccCCCCCCCCCCCCCCC----Ccccccc
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKN-PFITFLRKPSNSQYTTPASLS----SSSEGAA 80 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 80 (200)
.|+++||||+|+|+.+.+|++||+.+++..+++|+++||+++..... ....+ .. .. ....... .......
T Consensus 3 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~---~~-~~-~~~~~~~~~~~~~~~~~~ 77 (162)
T 1mjh_A 3 VMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSL---LL-GV-AGLNKSVEEFENELKNKL 77 (162)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC----------------------CHHHHHHHHHHH
T ss_pred cccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccc---cc-cc-cccccchhhhHHHHHHHH
Confidence 37999999999999999999999999999999999999975420000 00000 00 00 0000000 0000111
Q ss_pred ccchHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCC
Q 045490 81 APGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSK 158 (200)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~ 158 (200)
.+..++.++++.+.+... ++++++++..|+ +.+.|++++++.++||||||+++ .+.++++|
T Consensus 78 ~~~~~~~l~~~~~~~~~~----g~~~~~~v~~G~-~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~G------------ 140 (162)
T 1mjh_A 78 TEEAKNKMENIKKELEDV----GFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLG------------ 140 (162)
T ss_dssp HHHHHHHHHHHHHHHHHT----TCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSC------------
T ss_pred HHHHHHHHHHHHHHHHHc----CCceEEEEcCCC-HHHHHHHHHHHcCCCEEEEcCCCCCCccceEec------------
Confidence 223456677776666543 467777888888 99999999999999999999987 55666666
Q ss_pred CcChHHHHHcCCCccEEEEecC
Q 045490 159 GVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 159 ~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
|++++|+++++||||+|+.+
T Consensus 141 --Sv~~~vl~~~~~pVlvv~~~ 160 (162)
T 1mjh_A 141 --SVTENVIKKSNKPVLVVKRK 160 (162)
T ss_dssp --HHHHHHHHHCCSCEEEECCC
T ss_pred --chHHHHHHhCCCCEEEEeCC
Confidence 99999999999999999865
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.90 E-value=1e-23 Score=156.17 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=101.6
Q ss_pred CCeEEEEECCCcc--hHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 8 SRKVMVIADPTRE--SAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 8 ~~~IlVavD~s~~--s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
.++||||+|+|+. +..++++|+.+++..+++|+++||+++.... .. ... . .........+..+
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~---~~---~~~--~-------~~~~~~~~~~~~~ 65 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYY---AS---LGM--A-------YTAELPGMDELRE 65 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-------------------------------CHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccc---cc---ccc--c-------ccchhhhHHHHHH
Confidence 4799999999999 9999999999999999999999998653200 00 000 0 0001111122334
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccccCCCccCCCCcChHH
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTAE 164 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~~ 164 (200)
+..+++++.+++.+.. ++++++++..|+ +.+.|+++++++++||||||+++ .+.++++| |+++
T Consensus 66 ~~~~~l~~~~~~~~~~-~~~v~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~G--------------s~~~ 129 (143)
T 3fdx_A 66 GSETQLKEIAKKFSIP-EDRMHFHVAEGS-PKDKILALAKSLPADLVIIASHRPDITTYLLG--------------SNAA 129 (143)
T ss_dssp HHHHHHHHHHTTSCCC-GGGEEEEEEESC-HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSC--------------HHHH
T ss_pred HHHHHHHHHHHHcCCC-CCceEEEEEecC-hHHHHHHHHHHhCCCEEEEeCCCCCCeeeeec--------------cHHH
Confidence 5566666665554322 455677888997 99999999999999999999987 55566666 9999
Q ss_pred HHHcCCCccEEEEe
Q 045490 165 YLIQNSKCNCVGVQ 178 (200)
Q Consensus 165 ~vl~~s~~pVLvv~ 178 (200)
+|+++++||||+||
T Consensus 130 ~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 130 AVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHCSSEEEEEC
T ss_pred HHHHhCCCCEEEeC
Confidence 99999999999986
No 8
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.90 E-value=3.4e-23 Score=158.03 Aligned_cols=155 Identities=18% Similarity=0.128 Sum_probs=106.4
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
+|+++||||+|+|+.+..+++||+.+++..+++|+++||+++.... +.. .+.+. .+...............+..+
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~--~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLE--ELM-DGYSF--FYDNAEIELKDIKEKLKEEAS 77 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGG--CCC---------------CCTTSHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc--ccc-ccccc--ccccccccHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999998643200 000 00000 000000000011111223345
Q ss_pred HHHHHHHHHHHHhCCCcceEEEE--EEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcC
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEK--VHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~--~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
+.++++.+.+...+ +++++ ++..|+ +.+.|+++++++++||||||+++ .+.++++| |
T Consensus 78 ~~l~~~~~~~~~~g----~~~~~~~~~~~g~-~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~G--------------s 138 (170)
T 2dum_A 78 RKLQEKAEEVKRAF----RAKNVRTIIRFGI-PWDEIVKVAEEENVSLIILPSRGKLSLSHEFLG--------------S 138 (170)
T ss_dssp HHHHHHHHHHHHHT----TCSEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCCCC--TTCCC--------------H
T ss_pred HHHHHHHHHHHHcC----CceeeeeEEecCC-hHHHHHHHHHHcCCCEEEECCCCCCccccceec--------------h
Confidence 67777777766553 44544 677887 99999999999999999999987 45556666 9
Q ss_pred hHHHHHcCCCccEEEEecCCCCc
Q 045490 162 TAEYLIQNSKCNCVGVQRKGQNA 184 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~~~~ 184 (200)
++++|+++++||||+|+......
T Consensus 139 v~~~vl~~~~~PVlvv~~~~~~~ 161 (170)
T 2dum_A 139 TVMRVLRKTKKPVLIIKEVDENE 161 (170)
T ss_dssp HHHHHHHHCSSCEEEECCCCCC-
T ss_pred HHHHHHHhCCCCEEEEccCCccc
Confidence 99999999999999998776643
No 9
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.90 E-value=2.1e-23 Score=157.10 Aligned_cols=139 Identities=22% Similarity=0.221 Sum_probs=105.3
Q ss_pred CCCCCCeEEEEEC--CCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccc
Q 045490 4 GTPQSRKVMVIAD--PTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAA 81 (200)
Q Consensus 4 ~~~~~~~IlVavD--~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (200)
..+++++||||+| +|+.+..+++||+.+++..+++|+++||+++... +. +... .........
T Consensus 11 ~~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~----------~~---~~~~---~~~~~~~~~ 74 (156)
T 3fg9_A 11 EPLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDI----------NI---FDSL---TPSKIQAKR 74 (156)
T ss_dssp SCCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCT----------TC---CCSS---HHHHHHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCc----------cc---cccC---CHHHHHHHH
Confidence 4578999999999 9999999999999999999999999999865421 00 0000 001111222
Q ss_pred cchHHHHHHHHHHHHHhCCCcce-EEEEEEec-CCcHHHHHHHH-HHHcCCCEEEEecCC--CCCcccccccccCCCccC
Q 045490 82 PGGEDFLEEMKQACEVAKPKLRV-HVEKVHTE-SGNKAAIILSQ-STAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRG 156 (200)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~v-~v~~~~~~-g~~~~~~I~~~-a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~ 156 (200)
+..++.++++.+.+.+.+ + .+++++.. |+ +.+.|+++ +++.++||||||+++ .+. .++|
T Consensus 75 ~~~~~~l~~~~~~~~~~g----~~~~~~~v~~~g~-~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~G---------- 138 (156)
T 3fg9_A 75 KHVEDVVAEYVQLAEQRG----VNQVEPLVYEGGD-VDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAG---------- 138 (156)
T ss_dssp HHHHHHHHHHHHHHHHHT----CSSEEEEEEECSC-HHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCS----------
T ss_pred HHHHHHHHHHHHHHHHcC----CCceEEEEEeCCC-HHHHHHHHHHHhcCCCEEEECCCCCCccc-eeec----------
Confidence 345667777777776653 5 36677888 77 99999999 999999999999987 444 3566
Q ss_pred CCCcChHHHHHcCCCccEEEEe
Q 045490 157 SKGVDTAEYLIQNSKCNCVGVQ 178 (200)
Q Consensus 157 ~~~~s~~~~vl~~s~~pVLvv~ 178 (200)
|++++|+++++||||+||
T Consensus 139 ----s~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 139 ----AIGPRLARKAPISVIVVR 156 (156)
T ss_dssp ----CHHHHHHHHCSSEEEEEC
T ss_pred ----chHHHHHHhCCCCEEEeC
Confidence 999999999999999996
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.89 E-value=4.4e-23 Score=152.15 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=95.4
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHH
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGED 86 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
|+++||||+|+|+.+..+++||+.+++..+++|+++||.++... .+ . ... .........+..++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-----~~---~--~~~------~~~~~~~~~~~~~~ 64 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD-----YL---G--EPF------FEEALRRRLERAEG 64 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC------------------------------CHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc-----cc---c--ccc------hHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999753210 00 0 000 00000111122233
Q ss_pred HHHHHHHHHHHhCCCcce-EEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcChH
Q 045490 87 FLEEMKQACEVAKPKLRV-HVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVDTA 163 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v-~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s~~ 163 (200)
.++++.+. . ++ ++++++..|+ +.+.|+++++++++||||||+++ .+.+.++| |++
T Consensus 65 ~l~~~~~~---~----g~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~G--------------s~~ 122 (137)
T 2z08_A 65 VLEEARAL---T----GVPKEDALLLEGV-PAEAILQAARAEKADLIVMGTRGLGALGSLFLG--------------SQS 122 (137)
T ss_dssp HHHHHHHH---H----CCCGGGEEEEESS-HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSC--------------HHH
T ss_pred HHHHHHHH---c----CCCccEEEEEecC-HHHHHHHHHHHcCCCEEEECCCCCchhhhhhhc--------------cHH
Confidence 44443332 2 34 4445677887 99999999999999999999987 45556666 999
Q ss_pred HHHHcCCCccEEEEe
Q 045490 164 EYLIQNSKCNCVGVQ 178 (200)
Q Consensus 164 ~~vl~~s~~pVLvv~ 178 (200)
++|+++++||||+|+
T Consensus 123 ~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 123 QRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHHHHHCSSCEEEEC
T ss_pred HHHHhcCCCCEEEeC
Confidence 999999999999985
No 11
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.88 E-value=3.2e-23 Score=152.77 Aligned_cols=134 Identities=17% Similarity=0.166 Sum_probs=100.8
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhc-CCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccc-cchH
Q 045490 8 SRKVMVIADPTRESAGALQYALSHV-LLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAA-PGGE 85 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la-~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 85 (200)
+++||||+|+|+.+..+++||+.++ +..+++|+++||.++.... .+.... ......... +..+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~~ 65 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLY----GEAVLA-----------AYDEIEMKEEEKAK 65 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCC----HHHHHH-----------HHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcc----cccccC-----------cHHHHHHHHHHHHH
Confidence 5799999999999999999999999 9999999999998654210 000000 000111112 3345
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcChH
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVDTA 163 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s~~ 163 (200)
+.++++.+.+.+. ++++++++..|+ +.+.|+++++ ++||||||+++ .+.+++ | |++
T Consensus 66 ~~l~~~~~~~~~~----g~~~~~~v~~g~-~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-G--------------s~~ 123 (138)
T 3idf_A 66 LLTQKFSTFFTEK----GINPFVVIKEGE-PVEMVLEEAK--DYNLLIIGSSENSFLNKIF-A--------------SHQ 123 (138)
T ss_dssp HHHHHHHHHHHTT----TCCCEEEEEESC-HHHHHHHHHT--TCSEEEEECCTTSTTSSCC-C--------------CTT
T ss_pred HHHHHHHHHHHHC----CCCeEEEEecCC-hHHHHHHHHh--cCCEEEEeCCCcchHHHHh-C--------------cHH
Confidence 6677777766643 466777888998 9999999998 99999999986 455555 6 999
Q ss_pred HHHHcCCCccEEEEe
Q 045490 164 EYLIQNSKCNCVGVQ 178 (200)
Q Consensus 164 ~~vl~~s~~pVLvv~ 178 (200)
++|+++++||||+||
T Consensus 124 ~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 124 DDFIQKAPIPVLIVK 138 (138)
T ss_dssp CHHHHHCSSCEEEEC
T ss_pred HHHHhcCCCCEEEeC
Confidence 999999999999986
No 12
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.87 E-value=5e-22 Score=152.35 Aligned_cols=146 Identities=20% Similarity=0.359 Sum_probs=97.7
Q ss_pred CCCCeEEEEECCCc---------chHHHHHHHHHhcCC---CCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 045490 6 PQSRKVMVIADPTR---------ESAGALQYALSHVLL---EEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLS 73 (200)
Q Consensus 6 ~~~~~IlVavD~s~---------~s~~al~~A~~la~~---~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (200)
.++++||||+|+|+ .+..+++||+.++.+ .+++|+++||+++... .+.... ..+ . .
T Consensus 3 ~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~-----~~~~~~--~~~---~--~ 70 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDED-----GFDDVD--SIY---A--S 70 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-----------------CCC---C--S
T ss_pred CCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccc-----cccccc--ccc---C--C
Confidence 36899999999999 999999999998744 5889999999753310 000000 000 0 0
Q ss_pred Cccc----cccccchHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccc
Q 045490 74 SSSE----GAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGY 147 (200)
Q Consensus 74 ~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~ 147 (200)
.... ....+..++.++++.+.+... ++++++++..|+ +.+.|++++++.++||||||+++ .+.++++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----g~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~G- 144 (175)
T 2gm3_A 71 PEDFRDMRQSNKAKGLHLLEFFVNKCHEI----GVGCEAWIKTGD-PKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVG- 144 (175)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHHHH----TCEEEEEEEESC-HHHHHHHHHHHHCCSEEEEEECCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcC-
Confidence 0000 011122345666776666554 477777888898 99999999999999999999987 45566666
Q ss_pred cccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 148 RRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 148 ~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
|++++|+++++||||+|+.+..
T Consensus 145 -------------sva~~vl~~a~~pVlvv~~~~~ 166 (175)
T 2gm3_A 145 -------------TVSAFCVKHAECPVMTIKRNAD 166 (175)
T ss_dssp -------------CHHHHHHHHCSSCEEEEECCGG
T ss_pred -------------chHHHHHhCCCCCEEEEcCCcC
Confidence 9999999999999999987654
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.84 E-value=8.1e-21 Score=140.29 Aligned_cols=138 Identities=19% Similarity=0.208 Sum_probs=95.0
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHH
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGED 86 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
|+++||||+|+|+.+..++++|+.+++..+++|+++||.+... .. .+..... . .........+..++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~-----~~---~~~~~~~---~--~~~~~~~~~~~~~~ 67 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFS-----DL---YTGLIDV---N--MSSMQDRISTETQK 67 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCG-----GG---CCCCEEH---H--HHHHTTCCCCHHHH
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCch-----hh---hcccccc---c--hHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999973210 00 0000000 0 00000111122334
Q ss_pred HHHHHHHHHHHhCCCcceEE-EEEEecCCcHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccccCCCccCCCCcChHH
Q 045490 87 FLEEMKQACEVAKPKLRVHV-EKVHTESGNKAAIILSQSTAHGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTAE 164 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v-~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~~ 164 (200)
.++++ +++. ++++ ++++..|+ +.+.|++++++.++||||||++. .+.+ +| |+++
T Consensus 68 ~l~~~---~~~~----~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~--lg--------------s~~~ 123 (141)
T 1jmv_A 68 ALLDL---AESV----DYPISEKLSGSGD-LGQVLSDAIEQYDVDLLVTGHHQDFWSK--LM--------------SSTR 123 (141)
T ss_dssp HHHHH---HHHS----SSCCCCEEEEEEC-HHHHHHHHHHHTTCCEEEEEECCCCHHH--HH--------------HHHH
T ss_pred HHHHH---HHHc----CCCceEEEEecCC-HHHHHHHHHHhcCCCEEEEeCCCchhhh--hc--------------chHH
Confidence 44443 3333 2333 34667788 99999999999999999999873 2222 35 8999
Q ss_pred HHHcCCCccEEEEecCC
Q 045490 165 YLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 165 ~vl~~s~~pVLvv~~~~ 181 (200)
+|+++++||||+|+.+.
T Consensus 124 ~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 124 QVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp HHHTTCCSEEEEEECCC
T ss_pred HHHhcCCCCEEEeeCCC
Confidence 99999999999998764
No 14
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.82 E-value=2.3e-20 Score=154.10 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=111.9
Q ss_pred CCCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccch
Q 045490 5 TPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGG 84 (200)
Q Consensus 5 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (200)
.||+++|||++|+|+.+..+++||+.+|+..+++|+++||++..... .+ .. ............+..
T Consensus 19 m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~----~~---~~-------~~~~~~~~~~~~~~~ 84 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLS----TV---SG-------GIDIDHYIDEMSEKA 84 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-------------------CCCTTHHHHHHHHHH
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccc----cc---cc-------cccHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998654311 00 00 000011111222345
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEE-EEe-cCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCc
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEK-VHT-ESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~-~~~-~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
++.++++.+.+.+. ++++++ ++. .|+ +.+.| ++++.++||||||+++ .+.+.++|
T Consensus 85 ~~~l~~~~~~~~~~----g~~~~~~~v~~~g~-~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~G-------------- 143 (294)
T 3loq_A 85 EEVLPEVAQKIEAA----GIKAEVIKPFPAGD-PVVEI--IKASENYSFIAMGSRGASKFKKILLG-------------- 143 (294)
T ss_dssp HHHHHHHHHHHHHT----TCEEEECSSCCEEC-HHHHH--HHHHTTSSEEEEECCCCCHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHc----CCCcceeEeeccCC-hhHhe--eeccCCCCEEEEcCCCCccccceeec--------------
Confidence 66777777777654 578877 667 787 99999 8999999999999987 45566677
Q ss_pred ChHHHHHcCCCccEEEEecCC---C-Ccceeeee
Q 045490 161 DTAEYLIQNSKCNCVGVQRKG---Q-NAGYLLNT 190 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~---~-~~~~~~~~ 190 (200)
|++++++++++||||+|+... . ...+++.+
T Consensus 144 s~~~~vl~~~~~PVlvv~~~~~~~~~~~~Ilv~~ 177 (294)
T 3loq_A 144 SVSEGVLHDSKVPVYIFKHDMVVNSLFDRVLVAY 177 (294)
T ss_dssp CHHHHHHHHCSSCEEEECCCTTTTCTTSEEEEEC
T ss_pred cHHHHHHhcCCCCEEEecCccccCccCCEEEEEE
Confidence 899999999999999998775 2 24555544
No 15
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.81 E-value=5.1e-20 Score=153.26 Aligned_cols=150 Identities=13% Similarity=0.132 Sum_probs=108.2
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccc----ccc
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEG----AAA 81 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 81 (200)
+++++|||++|+|+.+..|++||+.+|+..+++|+++||.+...+ . .+. . . ...... ...
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~-----~---~~~---~--~---~~~~~~~~~~~~~ 68 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSY-----D---MTT---L--L---SPDERNAMRKGVI 68 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGG-----G---CTT---T--S---CHHHHHHHHHHHH
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccch-----h---hcc---c--c---ChhhHHHHHHHHH
Confidence 468999999999999999999999999999999999999753210 0 000 0 0 000000 111
Q ss_pred cchHHHHHHHHHHHHHhCCCcceEEEEEEe-cCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCC
Q 045490 82 PGGEDFLEEMKQACEVAKPKLRVHVEKVHT-ESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSK 158 (200)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~v~v~~~~~-~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~ 158 (200)
++.++.++++.+.+... ++++++++. .|+ +.+.|++++++.++||||||+++ .+.+.++|
T Consensus 69 ~~~~~~l~~~~~~~~~~----~v~~~~~~~~~g~-~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~G------------ 131 (319)
T 3olq_A 69 NQKTAWIKQQARYYLEA----GIQIDIKVIWHNR-PYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFT------------ 131 (319)
T ss_dssp HHHHHHHHHHHHHHHHT----TCCEEEEEEECSC-HHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCC------------
T ss_pred HHHHHHHHHHHHHHhhc----CCeEEEEEEecCC-hHHHHHHHHHhcCCCEEEEecCcCchhhccccc------------
Confidence 22345556665555432 477777878 777 99999999999999999999987 45556666
Q ss_pred CcChHHHHHcCCCccEEEEecCCC--Ccceeeee
Q 045490 159 GVDTAEYLIQNSKCNCVGVQRKGQ--NAGYLLNT 190 (200)
Q Consensus 159 ~~s~~~~vl~~s~~pVLvv~~~~~--~~~~~~~~ 190 (200)
|++++++++++||||+|+.... ...+++.+
T Consensus 132 --s~~~~vl~~~~~PVlvv~~~~~~~~~~Ilva~ 163 (319)
T 3olq_A 132 --PLDWQLLRKCPAPVWMVKDKEWPEYGTIVVAA 163 (319)
T ss_dssp --HHHHHHHHHCSSCEEEEESSCCCTTCEEEEEC
T ss_pred --ccHHHHHhcCCCCEEEecCcccccCCeEEEEE
Confidence 8999999999999999987654 24455544
No 16
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.81 E-value=1.5e-19 Score=133.05 Aligned_cols=135 Identities=14% Similarity=0.025 Sum_probs=94.6
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee-CC-CCCCCCcccccCCCCCCCCCCCCCCCCccccccccc
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD-TP-NSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPG 83 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (200)
.|+++|||++|+|+.+..+++||+.+++..+++|+++||. +. +.+ +.......+. .........+.
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~ 69 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLE--RANVTFGLPF----------PPEIKEESKKR 69 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHH--HHHHHHCCCC----------CTHHHHHHHHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEeccccccc--ccccccCCCC----------ChHHHHHHHHH
Confidence 4789999999999999999999999999999999999996 42 100 0000000110 00011111223
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChH
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTA 163 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~ 163 (200)
.++.++++ +.++ .. ..+ ++++++..|+ +.+.|++++++.++||||||+++. |++
T Consensus 70 ~~~~l~~~-~~~~-~~-~~~-~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~g~---------------------sv~ 123 (138)
T 1q77_A 70 IERRLREV-WEKL-TG-STE-IPGVEYRIGP-LSEEVKKFVEGKGYELVVWACYPS---------------------AYL 123 (138)
T ss_dssp HHHHHHHH-HHHH-HS-CCC-CCCEEEECSC-HHHHHHHHHTTSCCSEEEECSCCG---------------------GGT
T ss_pred HHHHHHHH-HHHh-hc-cCC-cceEEEEcCC-HHHHHHHHHHhcCCCEEEEeCCCC---------------------chH
Confidence 34555655 5431 11 123 4555677888 999999999999999999999971 589
Q ss_pred HHHHcCCCccEEEEe
Q 045490 164 EYLIQNSKCNCVGVQ 178 (200)
Q Consensus 164 ~~vl~~s~~pVLvv~ 178 (200)
++|+++++||||+|+
T Consensus 124 ~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 124 CKVIDGLNLASLIVK 138 (138)
T ss_dssp HHHHHHSSSEEEECC
T ss_pred HHHHHhCCCceEeeC
Confidence 999999999999985
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.81 E-value=1.7e-19 Score=149.99 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=105.9
Q ss_pred CCCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccch
Q 045490 5 TPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGG 84 (200)
Q Consensus 5 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (200)
..++++|||++|+|+.+..+++||+.+|+..+++|+++||+++... . .+... ..........+..
T Consensus 16 ~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~-----~---~~~~~-------~~~~~~~~~~~~~ 80 (309)
T 3cis_A 16 GNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVA-----T---WLEVP-------LPPGVLRWQQDHG 80 (309)
T ss_dssp --CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCC-----C---TTCCC-------CCHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCccc-----c---cccCC-------CCchhhHHHHHHH
Confidence 3678999999999999999999999999999999999999753210 0 00000 0001111122334
Q ss_pred HHHHHHHHHHHHHhCC-CcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcC
Q 045490 85 EDFLEEMKQACEVAKP-KLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~-~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
++.++++.+.+++... ..++++++++..|+ +.+.|+++++ ++||||||+++ .+.+.++| |
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~G--------------s 143 (309)
T 3cis_A 81 RHLIDDALKVVEQASLRAGPPTVHSEIVPAA-AVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLG--------------S 143 (309)
T ss_dssp HHHHHHHHHHHHHHCSSSCCSCEEEEEESSC-HHHHHHHHGG--GEEEEEEESSCTTCCTTCCSC--------------H
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEEecCC-HHHHHHHHhc--CCCEEEECCCCCccccccccC--------------c
Confidence 5677788777776511 01466777788888 9999999996 79999999987 45556666 9
Q ss_pred hHHHHHcCCCccEEEEecCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~ 181 (200)
++++|+++++||||+|+...
T Consensus 144 ~~~~vl~~~~~PVlvv~~~~ 163 (309)
T 3cis_A 144 VSSGLLRHAHCPVVIIHDED 163 (309)
T ss_dssp HHHHHHHHCSSCEEEECTTC
T ss_pred HHHHHHHhCCCCEEEEcCCc
Confidence 99999999999999998765
No 18
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.81 E-value=9.2e-20 Score=150.34 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=98.0
Q ss_pred CCCeEEEEECCCcc-------hHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccc
Q 045490 7 QSRKVMVIADPTRE-------SAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGA 79 (200)
Q Consensus 7 ~~~~IlVavD~s~~-------s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (200)
.+++||||+|+|+. +.+++++|..+++..+++|+++||+++... .. . . ... ..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~----------~~-~-~-------~~~-~~ 192 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPML----------SS-A-D-------PTF-QL 192 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC----------------------------CH-HH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccc----------cc-c-C-------chh-HH
Confidence 68999999999998 899999999999999999999999764320 00 0 0 000 00
Q ss_pred cccchHHHHHHHHHHHHHhCCCcceE-EEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccC
Q 045490 80 AAPGGEDFLEEMKQACEVAKPKLRVH-VEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRG 156 (200)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~v~-v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~ 156 (200)
..+..++..+.+.+.+++.+ ++ ++.++..|+ +.+.|+++++++++||||||+++ .+.++++|
T Consensus 193 ~~~~~~~~~~~l~~~~~~~g----~~~~~~~v~~g~-~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~G---------- 257 (290)
T 3mt0_A 193 SETIEARYREACRTFQAEYG----FSDEQLHIEEGP-ADVLIPRTAQKLDAVVTVIGTVARTGLSGALIG---------- 257 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTTTEEEEESC-HHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSC----------
T ss_pred HHHHHHHHHHHHHHHHHHcC----CCcceEEEeccC-HHHHHHHHHHhcCCCEEEECCCCCcCCcceecc----------
Confidence 11111223333334444443 31 334567787 99999999999999999999987 55666666
Q ss_pred CCCcChHHHHHcCCCccEEEEecCCC
Q 045490 157 SKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 157 ~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
|++++++++++||||+|++++.
T Consensus 258 ----sv~~~vl~~~~~pVLvv~~~~~ 279 (290)
T 3mt0_A 258 ----NTAEVVLDTLESDVLVLKPDDI 279 (290)
T ss_dssp ----HHHHHHHTTCSSEEEEECCHHH
T ss_pred ----hHHHHHHhcCCCCEEEECCCCC
Confidence 9999999999999999986544
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.80 E-value=4.8e-19 Score=146.01 Aligned_cols=133 Identities=18% Similarity=0.198 Sum_probs=105.9
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
+|+++|||++|+|+.+..+++||+.+|+..+++|+++||.++ +..+
T Consensus 5 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~----------------------------------~~~~ 50 (290)
T 3mt0_A 5 QAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR----------------------------------RDHS 50 (290)
T ss_dssp TTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS----------------------------------SCCH
T ss_pred hhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc----------------------------------HHHH
Confidence 468999999999999999999999999999999999999420 2334
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcChH
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVDTA 163 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s~~ 163 (200)
+.++++.+.+... ++++++.+..+.++.+.|++++++.++||||||+++ .+.+.++| |++
T Consensus 51 ~~l~~~~~~~~~~----~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~g--------------s~~ 112 (290)
T 3mt0_A 51 AALNDLAQELREE----GYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILT--------------PDD 112 (290)
T ss_dssp HHHHHHHHHHHHT----TCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCC--------------HHH
T ss_pred HHHHHHHHHHhhC----CCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccC--------------HHH
Confidence 6677777766543 466777777544499999999999999999999987 45566666 899
Q ss_pred HHHHcCCCccEEEEecCCC--Ccceeeee
Q 045490 164 EYLIQNSKCNCVGVQRKGQ--NAGYLLNT 190 (200)
Q Consensus 164 ~~vl~~s~~pVLvv~~~~~--~~~~~~~~ 190 (200)
++++++++||||+++.... ...+++++
T Consensus 113 ~~vl~~~~~PVlvv~~~~~~~~~~Ilva~ 141 (290)
T 3mt0_A 113 WKLLRFAPCPVLMTKTARPWTGGKILAAV 141 (290)
T ss_dssp HHHHHHCSSCEEEECCCSCSTTCEEEEEE
T ss_pred HHHHhcCCCCEEEecCCCCCCCCeEEEEE
Confidence 9999999999999984322 34455554
No 20
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.78 E-value=4.4e-19 Score=144.30 Aligned_cols=150 Identities=25% Similarity=0.231 Sum_probs=104.2
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcc-------ccccc
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSS-------EGAAA 81 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 81 (200)
++||||+|+|+.+..+++||+.+|+..+++|+++||+++... ......+.+. . .... .....
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~--~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~ 69 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLA--RIPELLDFGA--L-------TVPVPVLRTELERALA 69 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHH--THHHHC----------------CHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCc--ccccccCchH--H-------HHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999753210 0000000000 0 0000 01112
Q ss_pred cchHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC---CCCcccccccccCCCccCCC
Q 045490 82 PGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR---SLSNAILGYRRAGGSLRGSK 158 (200)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~---~~~~~~~G~~~~~~~~~~~~ 158 (200)
+..++.++++.+.+... ++++++++..|+ +.+.|+++ +.++||||||+++ .+.+.++|
T Consensus 70 ~~~~~~l~~~~~~~~~~----g~~~~~~~~~g~-~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~G------------ 130 (268)
T 3ab8_A 70 LRGEAVLERVRQSALAA----GVAVEAVLEEGV-PHEAILRR--ARAADLLVLGRSGEAHGDGFGGLG------------ 130 (268)
T ss_dssp HHHHHHHHHHHHHHHHT----TCCEEEEEEEEC-HHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCC------------
T ss_pred HHHHHHHHHHHHHHHhC----CCCeEEEEecCC-HHHHHHhh--ccCCCEEEEeccCCCccccccccc------------
Confidence 23456677777666654 466777788888 99999999 7899999999986 24444555
Q ss_pred CcChHHHHHcCCCccEEEEecCCC-Ccceeeee
Q 045490 159 GVDTAEYLIQNSKCNCVGVQRKGQ-NAGYLLNT 190 (200)
Q Consensus 159 ~~s~~~~vl~~s~~pVLvv~~~~~-~~~~~~~~ 190 (200)
|++++++++++||||+|+.... ...+++++
T Consensus 131 --s~~~~v~~~a~~PVlvv~~~~~~~~~ilv~~ 161 (268)
T 3ab8_A 131 --STADRVLRASPVPVLLAPGEPVELEGALLGY 161 (268)
T ss_dssp --HHHHHHHHHCSSCEEEECSSCCCCCEEEEEC
T ss_pred --hhHHHHHHhCCCCEEEECCCCCCCCEEEEEE
Confidence 9999999999999999987654 23444444
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.78 E-value=1.9e-18 Score=142.52 Aligned_cols=124 Identities=23% Similarity=0.254 Sum_probs=104.8
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
..+++|+||+|+++.+.+++++|..+++..+++|+++||.++. . .+
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~--------------------------~--------~~ 213 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDG--------------------------D--------KT 213 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSS--------------------------C--------CH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCc--------------------------h--------HH
Confidence 5689999999999999999999999999999999999995311 0 34
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcChH
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVDTA 163 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s~~ 163 (200)
+.++++.+.+++.+ +++++.+..|+ +.+.|++++++.++||||||+++ .+.++++| |++
T Consensus 214 ~~l~~~~~~l~~~~----~~~~~~~~~g~-~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~G--------------s~~ 274 (294)
T 3loq_A 214 ADLRVMEEVIGAEG----IEVHVHIESGT-PHKAILAKREEINATTIFMGSRGAGSVMTMILG--------------STS 274 (294)
T ss_dssp HHHHHHHHHHHHTT----CCEEEEEECSC-HHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHH--------------CHH
T ss_pred HHHHHHHHHHHHcC----CcEEEEEecCC-HHHHHHHHHHhcCcCEEEEeCCCCCCccceeeC--------------cHH
Confidence 56777777776643 55667788887 99999999999999999999976 66777777 899
Q ss_pred HHHHcCCCccEEEEecCCC
Q 045490 164 EYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 164 ~~vl~~s~~pVLvv~~~~~ 182 (200)
++++++++||||+|+++.+
T Consensus 275 ~~vl~~~~~pvLvv~~~~~ 293 (294)
T 3loq_A 275 ESVIRRSPVPVFVCKRGDD 293 (294)
T ss_dssp HHHHHHCSSCEEEECSCTT
T ss_pred HHHHhcCCCCEEEECCCCC
Confidence 9999999999999987653
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.77 E-value=2.2e-18 Score=143.27 Aligned_cols=137 Identities=20% Similarity=0.239 Sum_probs=99.8
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
..+++||||+|+++.+.+++++|..++...+++|+++||.++.... ..+ ........++.+
T Consensus 169 ~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-------~~~------------~~~~~~~~~~~~ 229 (309)
T 3cis_A 169 PQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS-------EWP------------GIDWPATQSMAE 229 (309)
T ss_dssp SCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT-------TCS------------SCCHHHHHHHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc-------CCC------------cccHHHHHHHHH
Confidence 4578999999999999999999999999999999999996533200 000 001111112233
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCccCCCCcChH
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSLRGSKGVDTA 163 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~~~~~~~s~~ 163 (200)
+.++++.+.+.+..+ +++++.++..|+ +.+.|+++++ ++||||||+++ .+.++++| |++
T Consensus 230 ~~l~~~~~~~~~~~~--~~~~~~~~~~g~-~~~~I~~~a~--~adliV~G~~~~~~~~~~l~G--------------sv~ 290 (309)
T 3cis_A 230 QVLAERLAGWQERYP--NVAITRVVVRDQ-PARQLVQRSE--EAQLVVVGSRGRGGYAGMLVG--------------SVG 290 (309)
T ss_dssp HHHHHHHTTHHHHCT--TSCEEEEEESSC-HHHHHHHHHT--TCSEEEEESSCSSCCTTCSSC--------------HHH
T ss_pred HHHHHHHHHHHhhCC--CCcEEEEEEcCC-HHHHHHHhhC--CCCEEEECCCCCCCccccccC--------------cHH
Confidence 445555444443222 356666788887 9999999997 89999999986 56666666 999
Q ss_pred HHHHcCCCccEEEEecC
Q 045490 164 EYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 164 ~~vl~~s~~pVLvv~~~ 180 (200)
++|+++++||||+|+.+
T Consensus 291 ~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 291 ETVAQLARTPVIVARES 307 (309)
T ss_dssp HHHHHHCSSCEEEECC-
T ss_pred HHHHhcCCCCEEEeCCC
Confidence 99999999999999853
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.77 E-value=1.3e-18 Score=144.77 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=102.6
Q ss_pred CCCCeEEEEECCCc-------chHHHHHHHHHhcCCC--CCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcc
Q 045490 6 PQSRKVMVIADPTR-------ESAGALQYALSHVLLE--EDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSS 76 (200)
Q Consensus 6 ~~~~~IlVavD~s~-------~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (200)
..+++||||+|+|+ .+.+++++|..++... +++|+++||++...... ....+. ...
T Consensus 154 ~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~----~~~~~~-----------~~~ 218 (319)
T 3olq_A 154 PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI----AIELPD-----------FDP 218 (319)
T ss_dssp CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC----CTTCTT-----------CCH
T ss_pred ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh----hccCCc-----------ccH
Confidence 36899999999999 4699999999999988 99999999986543100 000000 000
Q ss_pred ccccccchHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC--CCCcccccccccCCCc
Q 045490 77 EGAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR--SLSNAILGYRRAGGSL 154 (200)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~--~~~~~~~G~~~~~~~~ 154 (200)
.....+..++..+.+.+.+++.+.. .++.++..|+ +.+.|+++++++++||||||+++ .+.++++|
T Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~v~~g~-~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~G-------- 286 (319)
T 3olq_A 219 NLYNNALRGQHLIAMKELRQKFSIP---EEKTHVKEGL-PEQVIPQVCEELNAGIVVLGILGRTGLSAAFLG-------- 286 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC---GGGEEEEESC-HHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---cccEEEecCC-cHHHHHHHHHHhCCCEEEEeccCccCCcccccc--------
Confidence 0111111222333344444444311 2234567787 99999999999999999999976 67777787
Q ss_pred cCCCCcChHHHHHcCCCccEEEEecCCCCcc
Q 045490 155 RGSKGVDTAEYLIQNSKCNCVGVQRKGQNAG 185 (200)
Q Consensus 155 ~~~~~~s~~~~vl~~s~~pVLvv~~~~~~~~ 185 (200)
|++++|+++++||||+||.+++..+
T Consensus 287 ------sv~~~vl~~~~~pVLvv~~~~~~~p 311 (319)
T 3olq_A 287 ------NTAEQLIDHIKCDLLAIKPDGFTCP 311 (319)
T ss_dssp ------HHHHHHHTTCCSEEEEECCTTCCCC
T ss_pred ------HHHHHHHhhCCCCEEEECCCCCCCC
Confidence 8999999999999999998876433
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.70 E-value=4.4e-17 Score=132.43 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=96.2
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHH
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGED 86 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
.+++||||+|+++.+.+++++|..++...+++|+++||.++. +..++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~---------------------------------~~~~~ 199 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP---------------------------------ARAEA 199 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH---------------------------------HHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH---------------------------------HHHHH
Confidence 578999999999999999999999999889999999994210 12345
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHH
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYL 166 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~v 166 (200)
.++++.+.+.+. ++++++++..|+ +.+.|++++++. ||||||+ .+.++++| |+++++
T Consensus 200 ~l~~~~~~l~~~----~~~~~~~~~~g~-~~~~i~~~a~~~--dliV~G~--~~~~~~~G--------------s~~~~v 256 (268)
T 3ab8_A 200 WALEAEAYLRDH----GVEASALVLGGD-AADHLLRLQGPG--DLLALGA--PVRRLVFG--------------STAERV 256 (268)
T ss_dssp HHHHHHHHHHHT----TCCEEEEEECSC-HHHHHHHHCCTT--EEEEEEC--CCSCCSSC--------------CHHHHH
T ss_pred HHHHHHHHHHHc----CCceEEEEeCCC-hHHHHHHHHHhC--CEEEECC--cccccEec--------------cHHHHH
Confidence 667777776654 466676777887 999999999987 9999999 56666676 999999
Q ss_pred HcCCCccEEEEe
Q 045490 167 IQNSKCNCVGVQ 178 (200)
Q Consensus 167 l~~s~~pVLvv~ 178 (200)
+++++||||+++
T Consensus 257 l~~~~~pvlvv~ 268 (268)
T 3ab8_A 257 IRNAQGPVLTAR 268 (268)
T ss_dssp HHHCSSCEEEEC
T ss_pred HhcCCCCEEEeC
Confidence 999999999985
No 25
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=93.97 E-value=0.89 Score=37.26 Aligned_cols=96 Identities=11% Similarity=0.026 Sum_probs=62.7
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCe-EEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDE-LVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~-l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
..++|+|++.+..+|..++..+..+....+.+ |+++|+.... .....
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~--------------------------------r~~s~ 70 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHML--------------------------------RESAE 70 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCS--------------------------------STHHH
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCC--------------------------------CcccH
Confidence 45799999999999998888777776666777 9999994210 01122
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEec--------CCcHH--------HHHHHHHHHcCCCEEEEecCC
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTE--------SGNKA--------AIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~--------g~~~~--------~~I~~~a~~~~~dllVmG~~~ 138 (200)
+..+.+++.|+..+ ++..+.... |.++. ..+.+.+++++++.|+.|.+.
T Consensus 71 ~~~~~v~~~a~~lg----i~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 71 RDEEFCKEFAKERN----MKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp HHHHHHHHHHHHHT----CCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred HHHHHHHHHHHHcC----CcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 34555666676664 444333321 22222 245667788999999999874
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=92.95 E-value=0.62 Score=40.40 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=64.5
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHH
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGED 86 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
...+|+|++.+..+|..++..+..+....+.+++++||.... . .....+
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhgl--------------------------r-----g~~s~~ 65 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMF--------------------------R-----GRESEE 65 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTT--------------------------C-----THHHHH
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCC--------------------------C-----ccccHH
Confidence 457899999999999988888877776677899999994210 0 011223
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEec--------CCcH--------HHHHHHHHHHcCCCEEEEecCC
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTE--------SGNK--------AAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~--------g~~~--------~~~I~~~a~~~~~dllVmG~~~ 138 (200)
..+.+++.|++.+ ++..+.... |.++ -..+.+.+++++++.|+.|.+.
T Consensus 66 ~~~~v~~~~~~lg----i~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 66 EMEFVKRFCVERR----ILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp HHHHHHHHHHHTT----CEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred HHHHHHHHHHHcC----CcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 4455666676653 555444332 1111 1345677888999999999874
No 27
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=91.46 E-value=2.9 Score=30.12 Aligned_cols=127 Identities=17% Similarity=0.090 Sum_probs=80.7
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCC-CeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHH
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEE-DELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDF 87 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (200)
++|||-+.-+-.+.....-...+....+ .+.++ ++|++. + ..+ ........+..++.
T Consensus 2 ~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~V--LVPa~~-----------~-----~a~----~~e~~~a~~~A~~~ 59 (138)
T 2iel_A 2 ARYLVVAHRTAKSPELAAKLKELLAQDPEARFVL--LVPAVP-----------P-----PGW----VYEENEVRRRAEEE 59 (138)
T ss_dssp CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEE--EEEEEC-----------C-----CCS----CC--CHHHHHHHHH
T ss_pred ceEEEEecCccCcHhHHHHHHHhhcCCCceEEEE--EecCCC-----------C-----ccc----ccChHHHHHHHHHH
Confidence 6888888877666655544355554443 44422 222110 0 000 01111112234556
Q ss_pred HHHHHHHHHHhCCCcceEEE-EEEecCCcHHHHHHHHHHHcC--CCEEEEecCC-CCCcccccccccCCCccCCCCcChH
Q 045490 88 LEEMKQACEVAKPKLRVHVE-KVHTESGNKAAIILSQSTAHG--VDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTA 163 (200)
Q Consensus 88 l~~~~~~~~~~~~~~~v~v~-~~~~~g~~~~~~I~~~a~~~~--~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~ 163 (200)
++...+.++.. ++.++ -.+.+++ |...|.....+.+ +|=||+.+.. ..+++|.- +.+
T Consensus 60 l~~sl~aL~~~----G~~a~~G~v~d~~-Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~--------------Dwa 120 (138)
T 2iel_A 60 AAAAKRALEAQ----GIPVEEAKAGDIS-PLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRL--------------DVH 120 (138)
T ss_dssp HHHHHHHHHTT----TCCCSEEEEEESS-HHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHT--------------THH
T ss_pred HHHHHHHHHHc----CCcccccccCCCC-hHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhc--------------cHH
Confidence 66665655554 45555 5778888 9999999999999 9999999976 67788876 688
Q ss_pred HHHHcCCCccEEEE
Q 045490 164 EYLIQNSKCNCVGV 177 (200)
Q Consensus 164 ~~vl~~s~~pVLvv 177 (200)
++.=+ ...||+-+
T Consensus 121 srAr~-~gvPVlhl 133 (138)
T 2iel_A 121 TQAER-FGLPVIHV 133 (138)
T ss_dssp HHGGG-GSSCEEEE
T ss_pred HHHHh-cCCCEEEE
Confidence 88888 99999866
No 28
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=90.36 E-value=3.7 Score=30.99 Aligned_cols=75 Identities=9% Similarity=0.162 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHH---HcCCCEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQST---AHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~---~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
+-..++++.+.+++++ ++++..+..-..--+.+.++++ +.+++.+|.|+.+ .+
T Consensus 34 D~~v~~~a~~~L~~~g----I~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~------aa-------------- 89 (181)
T 4b4k_A 34 DWETMKYACDILDELN----IPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGG------AA-------------- 89 (181)
T ss_dssp GHHHHHHHHHHHHHTT----CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECS------SC--------------
T ss_pred HHHHHHHHHHHHHHcC----CCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccc------cc--------------
Confidence 4467888888888764 7788888877655555666654 4678899998866 11
Q ss_pred ChHHHHHcCCCccEEEEecCCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
....-+.-.+..||+-|+..+.
T Consensus 90 hLpGvvAa~T~~PVIGVPv~s~ 111 (181)
T 4b4k_A 90 HLPGMVAAKTNLPVIGVPVQSK 111 (181)
T ss_dssp CHHHHHHTTCCSCEEEEECCCT
T ss_pred cchhhHHhcCCCCEEEEecCCC
Confidence 3455577789999999987664
No 29
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=90.35 E-value=6.1 Score=32.18 Aligned_cols=123 Identities=9% Similarity=0.069 Sum_probs=76.2
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHH
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFL 88 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (200)
.+|||+.+........++++..+.. ..+-|+++++.+..+ .....+.+
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~-~~G~ltv~~i~p~~~-------------------------------~~~l~~ql 68 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITY-PKGSVKLLGLAGNTD-------------------------------KENLLSQL 68 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHT-TTCEEEEEECC---C-------------------------------TTCHHHHH
T ss_pred CcEEEecCCchhhhhHHHHHHHhcc-CceeEEEEEEccCCC-------------------------------ccHHHHHH
Confidence 5899999766677889999988864 666899999942110 01101114
Q ss_pred HHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcC-----CCEEEEecCC-CCCcccccccccCCCccCCCCcCh
Q 045490 89 EEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHG-----VDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDT 162 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~-----~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~ 162 (200)
+.+.+.+++. ++..-+.++...++.+.+...++.++ ++.|+||... .-++--+- .+
T Consensus 69 ~~l~~~l~~r----~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y~--------------~~ 130 (294)
T 3g40_A 69 PSISEGFQEE----GVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIR--------------EI 130 (294)
T ss_dssp HHHHHHHHHT----TCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHHH--------------HH
T ss_pred HHHHHHHHhC----CceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHHH--------------HH
Confidence 6666676665 47777778877779999999888764 6899999754 11111111 12
Q ss_pred HHHHHcCCCccEEEEecCCC
Q 045490 163 AEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 163 ~~~vl~~s~~pVLvv~~~~~ 182 (200)
. .-+++....|++.+..+.
T Consensus 131 i-~~~~~~~~nVlil~~~~~ 149 (294)
T 3g40_A 131 I-RKASMYRMGVLLFSKHPQ 149 (294)
T ss_dssp H-HHHHHTTCEEEEEECCTT
T ss_pred H-HHHHHhCceEEEEecCCc
Confidence 2 234467999999986554
No 30
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=90.07 E-value=0.39 Score=37.49 Aligned_cols=37 Identities=14% Similarity=-0.011 Sum_probs=30.4
Q ss_pred CCeEEEEECC-----CcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 8 SRKVMVIADP-----TRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 8 ~~~IlVavD~-----s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
+++|||.++. .+.+..+|..|..++...+.+|+++-+
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~ 44 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVA 44 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 4679999874 345889999999999888889988877
No 31
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=88.97 E-value=3.7 Score=30.82 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHH---HHcCCCEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQS---TAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a---~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
+-..++++...+++++ ++++..+..-+.--+.+.+++ ++.+++.||.++.+ -+
T Consensus 24 D~~v~~~a~~~l~~~g----i~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~------aa-------------- 79 (173)
T 4grd_A 24 DWDVMKHAVAILQEFG----VPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGG------AA-------------- 79 (173)
T ss_dssp GHHHHHHHHHHHHHTT----CCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEES------SC--------------
T ss_pred HHHHHHHHHHHHHHcC----CCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccc------cc--------------
Confidence 3467888888888764 778878887665555555555 44788988888765 12
Q ss_pred ChHHHHHcCCCccEEEEecCCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
....-+.-.+.+||+-|+-...
T Consensus 80 hLpgvvA~~t~~PVIgVPv~~~ 101 (173)
T 4grd_A 80 HLPGMLAAKTTVPVLGVPVASK 101 (173)
T ss_dssp CHHHHHHHHCCSCEEEEEECCT
T ss_pred cchhhheecCCCCEEEEEcCCC
Confidence 3445567788999999976554
No 32
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=88.69 E-value=4.4 Score=29.92 Aligned_cols=71 Identities=8% Similarity=-0.008 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHH
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAE 164 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~ 164 (200)
-...+++...+++++ ++++..+..-+.-.+.+.+++++...+.+|.++.+ -+ ....
T Consensus 12 ~~v~~~a~~~l~~~g----i~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~------aa--------------~Lpg 67 (157)
T 2ywx_A 12 LKIAEKAVNILKEFG----VEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGL------AA--------------HLPG 67 (157)
T ss_dssp HHHHHHHHHHHHHTT----CCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEES------SC--------------CHHH
T ss_pred HHHHHHHHHHHHHcC----CCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCc------hh--------------hhHH
Confidence 357778888877664 77887888777678888888887666888888765 12 4555
Q ss_pred HHHcCCCccEEEEec
Q 045490 165 YLIQNSKCNCVGVQR 179 (200)
Q Consensus 165 ~vl~~s~~pVLvv~~ 179 (200)
-+.-.+.+||+-|+.
T Consensus 68 vva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 68 VVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHTTCSSCEEEEEE
T ss_pred HHHhccCCCEEEecC
Confidence 677789999999976
No 33
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=87.72 E-value=5.4 Score=29.93 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHH---HcCCCEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQST---AHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~---~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
+-...+++...+++++ ++++..+..-+.-.+.+.++++ +.+++.+|.++.+ -+
T Consensus 24 D~~v~~~a~~~L~~~G----i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~------aa-------------- 79 (174)
T 3kuu_A 24 DWATMQFAADVLTTLN----VPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGG------AA-------------- 79 (174)
T ss_dssp GHHHHHHHHHHHHHTT----CCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEES------SC--------------
T ss_pred HHHHHHHHHHHHHHcC----CCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECCh------hh--------------
Confidence 3467888888888764 7778788876666666667665 4678988888755 12
Q ss_pred ChHHHHHcCCCccEEEEecCCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
....-+.-.+.+||+-|+..+.
T Consensus 80 ~LpgvvA~~t~~PVIgVP~~~~ 101 (174)
T 3kuu_A 80 HLPGMLAAKTLVPVLGVPVQSA 101 (174)
T ss_dssp CHHHHHHHTCSSCEEEEEECCT
T ss_pred hhHHHHHhccCCCEEEeeCCCC
Confidence 4555677789999999976644
No 34
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=87.71 E-value=5.9 Score=29.62 Aligned_cols=74 Identities=9% Similarity=0.160 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHH---cCCCEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTA---HGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
+-..++++...+++++ ++++..+..-..-.+.+.+++++ .+++.+|.++.+ .+
T Consensus 23 D~~v~~~a~~~L~~~G----i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~------aa-------------- 78 (170)
T 1xmp_A 23 DWETMKYACDILDELN----IPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGG------AA-------------- 78 (170)
T ss_dssp GHHHHHHHHHHHHHTT----CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEES------SC--------------
T ss_pred HHHHHHHHHHHHHHcC----CCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCc------hh--------------
Confidence 3467788888887764 77887888766566666777654 458888888765 12
Q ss_pred ChHHHHHcCCCccEEEEecCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~ 181 (200)
....-+.-.+.+||+-|+...
T Consensus 79 ~LpgvvA~~t~~PVIgVP~~~ 99 (170)
T 1xmp_A 79 HLPGMVAAKTNLPVIGVPVQS 99 (170)
T ss_dssp CHHHHHHTTCCSCEEEEEECC
T ss_pred hhHHHHHhccCCCEEEeeCCC
Confidence 455567778999999998765
No 35
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=87.56 E-value=3.2 Score=33.25 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=51.8
Q ss_pred EECCCcchHHHHHHHHHhcCCCCC--eEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHH
Q 045490 14 IADPTRESAGALQYALSHVLLEED--ELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEM 91 (200)
Q Consensus 14 avD~s~~s~~al~~A~~la~~~~a--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (200)
..-.++.+..|+..|..+..+.+. +|+++.+- | ...++.+.++
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G---------------~--------------------~~~~~~lr~a 76 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVG---------------P--------------------DRVDESLRKC 76 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEES---------------C--------------------GGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeC---------------c--------------------hhHHHHHHHH
Confidence 334566778999999999776665 89998881 1 1123344444
Q ss_pred HHHHHHhCCCcceEEEEEEecCCc---HHHHHHHHHHHcCCCEEEEecCC
Q 045490 92 KQACEVAKPKLRVHVEKVHTESGN---KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 92 ~~~~~~~~~~~~v~v~~~~~~g~~---~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
... +...-+.++-....+.+ .+..|...+++.++|+|++|...
T Consensus 77 la~----GaD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s 122 (264)
T 1o97_C 77 LAK----GADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQS 122 (264)
T ss_dssp HHT----TCSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCC
T ss_pred Hhc----CCCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 222 43322222111111222 35578888888899999999865
No 36
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=87.39 E-value=5.3 Score=29.84 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHH---HHcCCCEEEEecCCCCCcccccccccCCCccCCCCcC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQS---TAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a---~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
-...+++...+++++ ++++..+..-+.-.+.+.+++ ++.+++.+|.++.+ .+ .
T Consensus 19 ~~v~~~a~~~l~~~g----i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~------aa--------------~ 74 (169)
T 3trh_A 19 LSTMETAFTELKSLG----IPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGL------AA--------------H 74 (169)
T ss_dssp HHHHHHHHHHHHHTT----CCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECS------SC--------------C
T ss_pred HHHHHHHHHHHHHcC----CCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECCh------hh--------------h
Confidence 467788888887764 777778887665555555554 45788988888765 12 4
Q ss_pred hHHHHHcCCCccEEEEecCCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~~ 182 (200)
...-+.-.+.+||+-|+..+.
T Consensus 75 LpgvvA~~t~~PVIgVP~~~~ 95 (169)
T 3trh_A 75 LAGTIAAHTLKPVIGVPMAGG 95 (169)
T ss_dssp HHHHHHHTCSSCEEEEECCCS
T ss_pred hHHHHHhcCCCCEEEeecCCC
Confidence 555677889999999986643
No 37
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=87.12 E-value=7.6 Score=28.88 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHH---cCCCEEEEecCCCCCcccccccccCCCccCCCCcC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTA---HGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
....+++...++++ +++++..+..-+.-.+.+.+++++ .+++.+|.++.+ .+ .
T Consensus 18 ~~v~~~a~~~l~~~----gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~------aa--------------~ 73 (166)
T 3oow_A 18 WSTMKECCDILDNL----GIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGG------AA--------------H 73 (166)
T ss_dssp HHHHHHHHHHHHHT----TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECS------SC--------------C
T ss_pred HHHHHHHHHHHHHc----CCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCc------ch--------------h
Confidence 46778888887776 478888888776666667777654 467888888765 22 4
Q ss_pred hHHHHHcCCCccEEEEecCCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~~ 182 (200)
...-+.-.+.+||+-|+....
T Consensus 74 LpgvvA~~t~~PVIgVP~~~~ 94 (166)
T 3oow_A 74 LPGMVAAKTTLPVLGVPVKSS 94 (166)
T ss_dssp HHHHHHHTCSSCEEEEECCCT
T ss_pred hHHHHHhccCCCEEEeecCcC
Confidence 555677889999999976543
No 38
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=86.62 E-value=1.6 Score=37.89 Aligned_cols=92 Identities=12% Similarity=-0.023 Sum_probs=59.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|..-....||..|+..+...+..|..+++.++..+ ........-..+.+..+.+.+
T Consensus 46 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~------------------------~~~~~r~~Fl~~sL~~L~~~L 101 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFL------------------------EAGIRQYEFMLKGLQELEVSL 101 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGG------------------------GSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhh------------------------ccCHHHHHHHHHHHHHHHHHH
Confidence 44445567888888776555667999999754320 000000011235566666666
Q ss_pred HHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 96 EVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++.+ +.+ .+..|+ +.+.|.+.+++++++.|+.-...
T Consensus 102 ~~~G----~~L--~v~~g~-~~~~l~~l~~~~~~~~V~~~~~~ 137 (482)
T 2xry_A 102 SRKK----IPS--FFLRGD-PGEKISRFVKDYNAGTLVTDFSP 137 (482)
T ss_dssp HHTT----CCE--EEEESC-HHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHcC----CcE--EEEeCC-HHHHHHHHHHHcCCCEEEEeccc
Confidence 6554 444 456788 99999999999999999986643
No 39
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=85.31 E-value=6.6 Score=29.02 Aligned_cols=73 Identities=10% Similarity=0.004 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHH---c-CCCEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTA---H-GVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~---~-~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
-...+++...++++ +++++..+..-+.-.+.+.+++++ . +++.+|.++.+ -+
T Consensus 15 ~~v~~~a~~~l~~~----gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~------aa-------------- 70 (159)
T 3rg8_A 15 MGHAEKIASELKTF----GIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGR------SN-------------- 70 (159)
T ss_dssp HHHHHHHHHHHHHT----TCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCS------SC--------------
T ss_pred HHHHHHHHHHHHHc----CCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCc------hh--------------
Confidence 35777888887766 488888888766666667666643 2 58888888865 12
Q ss_pred ChHHHHHcCCCccEEEEecCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~ 181 (200)
....-+.-.+.+||+-|+..+
T Consensus 71 ~LpgvvA~~t~~PVIgVP~~~ 91 (159)
T 3rg8_A 71 ALSGFVDGFVKGATIACPPPS 91 (159)
T ss_dssp CHHHHHHHHSSSCEEECCCCC
T ss_pred hhHHHHHhccCCCEEEeeCCC
Confidence 455557778999999997554
No 40
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=85.23 E-value=7 Score=29.52 Aligned_cols=74 Identities=8% Similarity=0.119 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHH---cCCCEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTA---HGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~---~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
+-..++++...+++++ ++++..+..-+.-.+.+.+++++ .+++.||.++.+ -+
T Consensus 33 D~~v~~~a~~~L~~~G----i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~------aa-------------- 88 (182)
T 1u11_A 33 DWETMRHADALLTELE----IPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGG------AA-------------- 88 (182)
T ss_dssp GHHHHHHHHHHHHHTT----CCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEES------SC--------------
T ss_pred HHHHHHHHHHHHHHcC----CCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCc------hh--------------
Confidence 3467888888888764 77887888766666777777664 458888888765 12
Q ss_pred ChHHHHHcCCCccEEEEecCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~ 181 (200)
....-+.-.+.+||+-|+...
T Consensus 89 ~LpgvvA~~t~~PVIgVP~~~ 109 (182)
T 1u11_A 89 HLPGMCAAWTRLPVLGVPVES 109 (182)
T ss_dssp CHHHHHHHHCSSCEEEEEECC
T ss_pred hhHHHHHhccCCCEEEeeCCC
Confidence 455557778899999998765
No 41
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=84.82 E-value=8.4 Score=28.57 Aligned_cols=74 Identities=11% Similarity=0.202 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHH---HcCCCEEEEecCCCCCcccccccccCCCccCCCCcC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQST---AHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~---~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
...++++...+++++ ++++..+..-+.-.+.+.++++ +.+++.+|.++.+ -+ .
T Consensus 16 ~~v~~~a~~~l~~~g----i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~------aa--------------~ 71 (163)
T 3ors_A 16 WKIMQESCNMLDYFE----IPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGG------AA--------------H 71 (163)
T ss_dssp HHHHHHHHHHHHHTT----CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEES------SC--------------C
T ss_pred HHHHHHHHHHHHHcC----CCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCc------hh--------------h
Confidence 467788888887764 7777788876656666666655 4568988888755 12 3
Q ss_pred hHHHHHcCCCccEEEEecCCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~~ 182 (200)
...-+.-.+.+||+-|+....
T Consensus 72 LpgvvA~~t~~PVIgVP~~~~ 92 (163)
T 3ors_A 72 LPGMVASLTTLPVIGVPIETK 92 (163)
T ss_dssp HHHHHHHHCSSCEEEEEECCT
T ss_pred hHHHHHhccCCCEEEeeCCCC
Confidence 555577789999999976544
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=84.42 E-value=4.2 Score=33.51 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=30.9
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+.+|+|++.+..+|...|..+.......+..|.++|+.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vD 83 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVD 83 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEEC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEE
Confidence 46899999999999998888887765445678889993
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=84.36 E-value=12 Score=29.48 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=50.6
Q ss_pred CCcchHHHHHHHHHhcCCCCC--eEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHH
Q 045490 17 PTRESAGALQYALSHVLLEED--ELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQA 94 (200)
Q Consensus 17 ~s~~s~~al~~A~~la~~~~a--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (200)
.++.+..|++.|..+... +. +|+++.+-+ ...++.+.++...
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~-----------------------------------~~a~~~lr~ala~ 78 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGV-----------------------------------KQAAETLRTALAM 78 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEES-----------------------------------GGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC-----------------------------------hhHHHHHHHHHhc
Confidence 455678999999999776 65 899888821 1123444444332
Q ss_pred HHHhCCCcceEEE-EEEe-cCCc---HHHHHHHHHHHcCCCEEEEecCC
Q 045490 95 CEVAKPKLRVHVE-KVHT-ESGN---KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 95 ~~~~~~~~~v~v~-~~~~-~g~~---~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+...-+.++ -... .+.+ .+..|...+++.++|+|++|...
T Consensus 79 ----GaD~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s 123 (252)
T 1efp_B 79 ----GADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQA 123 (252)
T ss_dssp ----TCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCC
T ss_pred ----CCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 544223332 1111 2322 35678888888899999999865
No 44
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=83.70 E-value=11 Score=28.53 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHH---HcCCCEEEEecCCCCCcccccccccCCCccCCCCcC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQST---AHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVD 161 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~---~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s 161 (200)
-..++++...++++ +++++..+..-..-.+.+.++++ +.+++.+|.++.+ .+ .
T Consensus 26 ~~v~~~a~~~L~~~----Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~------aa--------------~ 81 (183)
T 1o4v_A 26 LPVMKQAAEILEEF----GIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGG------AA--------------H 81 (183)
T ss_dssp HHHHHHHHHHHHHT----TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEES------SC--------------C
T ss_pred HHHHHHHHHHHHHc----CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCc------cc--------------c
Confidence 46777888887766 48888888876655566666655 4568988888765 12 3
Q ss_pred hHHHHHcCCCccEEEEecCC
Q 045490 162 TAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 162 ~~~~vl~~s~~pVLvv~~~~ 181 (200)
...-+.-.+.+||+-|+...
T Consensus 82 LpgvvA~~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 82 LPGMVASITHLPVIGVPVKT 101 (183)
T ss_dssp HHHHHHHHCSSCEEEEEECC
T ss_pred cHHHHHhccCCCEEEeeCCC
Confidence 55557778999999998765
No 45
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=83.52 E-value=8.4 Score=28.89 Aligned_cols=74 Identities=12% Similarity=0.146 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHH---HHHcCCCEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 84 GEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQ---STAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~---a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
+-..++++...+++++ ++++..+..-+.-.+.+.++ +++.+++.+|.++.+ .+
T Consensus 19 D~~v~~~a~~~L~~~g----i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~------aa-------------- 74 (174)
T 3lp6_A 19 DWPVMADAAAALAEFD----IPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGG------AA-------------- 74 (174)
T ss_dssp GHHHHHHHHHHHHHTT----CCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEES------SC--------------
T ss_pred hHHHHHHHHHHHHHcC----CCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCc------hh--------------
Confidence 3467788888887764 77777777765444555555 556789988888755 12
Q ss_pred ChHHHHHcCCCccEEEEecCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~ 181 (200)
....-+.-.+.+||+-|+...
T Consensus 75 ~LpgvvA~~t~~PVIgVP~~~ 95 (174)
T 3lp6_A 75 HLPGMVAAATPLPVIGVPVPL 95 (174)
T ss_dssp CHHHHHHHHCSSCEEEEEECC
T ss_pred hhHHHHHhccCCCEEEeeCCC
Confidence 455567778999999997653
No 46
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=81.55 E-value=8.5 Score=30.56 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=48.2
Q ss_pred cchHHHHHHHHHhcCCCCC--eEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHHH
Q 045490 19 RESAGALQYALSHVLLEED--ELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQACE 96 (200)
Q Consensus 19 ~~s~~al~~A~~la~~~~a--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (200)
+.+..|++.|..+... +. +|+++.+-+ ...++.+.++...
T Consensus 40 p~d~~Ale~A~~Lke~-g~~~~V~av~~G~-----------------------------------~~a~~~lr~ala~-- 81 (255)
T 1efv_B 40 PFCEIAVEEAVRLKEK-KLVKEVIAVSCGP-----------------------------------AQCQETIRTALAM-- 81 (255)
T ss_dssp HHHHHHHHHHHHHHHT-TSCSEEEEEEEES-----------------------------------TTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc-CCCceEEEEEeCC-----------------------------------hhHHHHHHHHHhc--
Confidence 3456899999998766 55 899888821 1123444444332
Q ss_pred HhCCCcceEEE-EEEe-cCCc---HHHHHHHHHHHcCCCEEEEecCC
Q 045490 97 VAKPKLRVHVE-KVHT-ESGN---KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 97 ~~~~~~~v~v~-~~~~-~g~~---~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+...-+.++ -... .+.+ .+..|...+++.++|+|++|...
T Consensus 82 --GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s 126 (255)
T 1efv_B 82 --GADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQA 126 (255)
T ss_dssp --TCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCC
T ss_pred --CCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 544223332 1111 2322 35578888888899999999865
No 47
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=80.57 E-value=3.2 Score=36.41 Aligned_cols=89 Identities=15% Similarity=0.034 Sum_probs=57.4
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|+.-....||..|+..+...+..|+.++++++..+. + ........-..+.+..+.+.+
T Consensus 47 DLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~---------~-------------~~~~~r~~FL~~sL~dL~~~L 104 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAASASPLAVAFALFPRPFL---------L-------------SARRRQLGFLLRGLRRLAADA 104 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCG---------G-------------GCCHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhc---------c-------------CCCHHHHHHHHHHHHHHHHHH
Confidence 555455678999998876667789999997543210 0 000000111235566666666
Q ss_pred HHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEE
Q 045490 96 EVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLII 134 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVm 134 (200)
++.+ +.. .+..|+ +.+. .+.+++.+++.|+.
T Consensus 105 ~~lG----~~L--~v~~G~-p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 105 AARH----LPF--FLFTGG-PAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp HHTT----CCE--EEESSC-TTHH-HHHHHHTTCSEEEE
T ss_pred HHcC----Cce--EEEecC-hHHH-HHHHHhcCCCEEEe
Confidence 6554 444 567788 8888 99999999999997
No 48
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=78.80 E-value=2 Score=35.04 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHHHHhCC
Q 045490 21 SAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQACEVAKP 100 (200)
Q Consensus 21 s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (200)
..-++-.|-.+...++++|.++-|++. +...+..++.++++.+.++
T Consensus 178 g~LmlllAylL~~nW~A~I~L~~vV~d------------------------------e~a~~~a~~~l~~Lv~~~R---- 223 (294)
T 3g40_A 178 MDLALLIAYKLKSNWKASLSFMTFAPT------------------------------AIQAQAAENFLQSLAELAR---- 223 (294)
T ss_dssp THHHHHHHHHHHHHHTCEEEEEEECSS------------------------------HHHHHHHHHHHHHHHHHHT----
T ss_pred hhHHHHHHHHHhhCcCCeEEEEEecCC------------------------------HHHHHHHHHHHHHHHHHhc----
Confidence 344555555555567999999999421 2222344556666655543
Q ss_pred CcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 101 KLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 101 ~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
++.... ++. . +...|+..+ -++||+++|-..-.. + .+..+.++++..+||.+++-
T Consensus 224 -i~a~~~--vv~-~-~F~~il~~s--~~ADL~flGl~~~~d---f---------------~~~~~~~~~~~ssc~f~~ds 278 (294)
T 3g40_A 224 -IPNVKM--QVL-R-ENPIKSSKL--PFASLHIFSLDPNPD---L---------------DLARHLMEKAGSSCIFALDS 278 (294)
T ss_dssp -CCSCEE--EEE-S-SCTTTSSSC--CCCSEEEEECCSSCC---H---------------HHHHHHHHHHTSEEEEEECC
T ss_pred -CCceEE--Eec-C-chHHHHhhC--cCCCEEEEcCCCCCc---H---------------HHHHHHHHhcCCeEEEEecC
Confidence 223332 223 4 566666665 679999999754111 2 47788999999999999876
Q ss_pred CC
Q 045490 181 GQ 182 (200)
Q Consensus 181 ~~ 182 (200)
+.
T Consensus 279 g~ 280 (294)
T 3g40_A 279 GE 280 (294)
T ss_dssp SC
T ss_pred ch
Confidence 65
No 49
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=76.98 E-value=12 Score=31.83 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCC-CCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLL-EEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~-~~a~l~llhV~ 45 (200)
...+|+|++.+..+|..++..+..+... .+.+++++||.
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvd 51 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVH 51 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEEC
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEE
Confidence 3579999999999999888887777665 67899999993
No 50
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=76.21 E-value=36 Score=29.41 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=30.3
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
...++|+|++.+.-+|..++.|+.+. +.+|+.+|+.
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd 43 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTAN 43 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEE
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 34679999999999999999888653 6799999995
No 51
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=74.20 E-value=26 Score=26.41 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=26.8
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.+|+|++.+..+|...+..+.... ..|.++|+.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd 77 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTD 77 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEee
Confidence 589999999999998887776663 368888984
No 52
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=74.01 E-value=21 Score=31.11 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=70.5
Q ss_pred CCeEEEEE--CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 8 SRKVMVIA--DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 8 ~~~IlVav--D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
.+++++=+ |..-....||..|+.. + .+..|+++++..+. . . ........-..
T Consensus 11 ~~~~l~WfrrDLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~---------~----~--------~~~~~~~~fl~ 64 (509)
T 1u3d_A 11 GGCSIVWFRRDLRVEDNPALAAAVRA----G-PVIALFVWAPEEEG---------H----Y--------HPGRVSRWWLK 64 (509)
T ss_dssp --CEEEEESSCCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGT---------T----C--------CCCHHHHHHHH
T ss_pred CCcEEEEECCCCccchhHHHHHHHhC----C-CEEEEEEECchhcc---------c----C--------CcchHHHHHHH
Confidence 34555555 6666667788888775 2 57788887543210 0 0 00000000123
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccccCCCccCCCCcChHH
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTAE 164 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~~ 164 (200)
+.+..+.+.+++.+ +.+ .+..+.++.+.|.+.+++++++.|+.-... ......- ....
T Consensus 65 ~sL~~L~~~L~~~G----~~L--~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd---------------~~v~ 123 (509)
T 1u3d_A 65 NSLAQLDSSLRSLG----TCL--ITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRD---------------HRAK 123 (509)
T ss_dssp HHHHHHHHHHHHTT----CCE--EEEECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHCC----CeE--EEEeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHH---------------HHHH
Confidence 55566666666554 444 445543399999999999999999986532 1110011 1234
Q ss_pred HHHcCCCccEEEEecC
Q 045490 165 YLIQNSKCNCVGVQRK 180 (200)
Q Consensus 165 ~vl~~s~~pVLvv~~~ 180 (200)
..+...+|++..+...
T Consensus 124 ~~l~~~gi~~~~~~~~ 139 (509)
T 1u3d_A 124 DVLTAQGIAVRSFNAD 139 (509)
T ss_dssp HHHHTTTCEEEEECCS
T ss_pred HHHHHcCcEEEEECCC
Confidence 4566678888877554
No 53
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=72.94 E-value=22 Score=27.31 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=51.1
Q ss_pred CCCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccch
Q 045490 5 TPQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGG 84 (200)
Q Consensus 5 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (200)
.|..+||.|-+.++.....++-.++.- ...+.+|.++-...+. .
T Consensus 4 ~m~~~ri~vl~SG~gsnl~all~~~~~-~~l~~~I~~Visn~~~---------------------------------a-- 47 (209)
T 4ds3_A 4 SMKRNRVVIFISGGGSNMEALIRAAQA-PGFPAEIVAVFSDKAE---------------------------------A-- 47 (209)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHHTS-TTCSEEEEEEEESCTT---------------------------------C--
T ss_pred cCCCccEEEEEECCcHHHHHHHHHHHc-CCCCcEEEEEEECCcc---------------------------------c--
Confidence 355568999999998888777666532 2234566665442100 0
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecC--C--cHHHHHHHHHHHcCCCEEEEecCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTES--G--NKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g--~--~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
..+ +.+++. ++++...-... + ...+.+++..+++++|++|+..-+
T Consensus 48 -~~l----~~A~~~----gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 48 -GGL----AKAEAA----GIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp -THH----HHHHHT----TCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred -HHH----HHHHHc----CCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 012 233333 46663221111 1 013688999999999999998744
No 54
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=72.90 E-value=27 Score=26.06 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.5
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.++|+|++.+..+|..++.++... +.+|+.+|+.
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~ 36 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFH 36 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEE
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEe
Confidence 468999999999999888777654 3578899994
No 55
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=72.04 E-value=19 Score=30.10 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=28.0
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
..++|+|++.+..+|..++..+.+. +.+|+.+|+.
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~~----G~~V~~v~~~ 42 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQ----GYDVIGIFMK 42 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHc----CCcEEEEEEE
Confidence 4579999999999999877665543 6789999984
No 56
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=71.10 E-value=9.7 Score=25.57 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecC----C---CCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEe
Q 045490 116 KAAIILSQSTAHGVDLLIIGQR----R---SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQ 178 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~----~---~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~ 178 (200)
..+.|.+.+++++++.||+|-. | ...+... ..++++-+. ++||..+.
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~---------------~f~~~L~~~-~lpV~~~D 92 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVL---------------PLVEALRAR-GVEVELWD 92 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTH---------------HHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHH---------------HHHHHHhcC-CCCEEEEC
Confidence 5678899999999999999942 1 1111111 356677777 89999884
No 57
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=70.74 E-value=28 Score=29.16 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=27.3
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
...++|+|++.+..+|..++..+.+ .+.+|+.+|+.
T Consensus 15 ~~~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~ 50 (380)
T 2der_A 15 ETAKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMK 50 (380)
T ss_dssp --CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEE
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEE
Confidence 3467999999999999877766543 36789999994
No 58
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=70.69 E-value=29 Score=29.97 Aligned_cols=101 Identities=9% Similarity=0.071 Sum_probs=58.8
Q ss_pred eEEEEE--CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHH
Q 045490 10 KVMVIA--DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDF 87 (200)
Q Consensus 10 ~IlVav--D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (200)
.+++=+ |..-....||..|+.. +..+..|++.++..+... ...+ .........-..+.
T Consensus 7 ~~l~WfrrDLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~~---------~~~~-------~~~~~~r~~Fl~~s 66 (489)
T 1np7_A 7 TVLVWFRNDLRLHDHEPLHRALKS----GLAITAVYCYDPRQFAQT---------HQGF-------AKTGPWRSNFLQQS 66 (489)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHT----TSEEEEEEEECGGGGSBC---------TTSC-------BSSCHHHHHHHHHH
T ss_pred cEEEEeCCCCCcchHHHHHHHHhc----CCCEEEEEEECchhhccc---------cccc-------CCCCHHHHHHHHHH
Confidence 444444 6666667788888653 347888899764321000 0000 00000001112355
Q ss_pred HHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 88 LEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 88 l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
+..+.+.+++.+ +.+ .+..|+ +.+.|.+.+++++++.|+.-..
T Consensus 67 L~~L~~~L~~~G----~~L--~v~~g~-~~~~l~~l~~~~~~~~V~~~~~ 109 (489)
T 1np7_A 67 VQNLAESLQKVG----NKL--LVTTGL-PEQVIPQIAKQINAKTIYYHRE 109 (489)
T ss_dssp HHHHHHHHHHTT----CCE--EEEESC-HHHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHHCC----CcE--EEEECC-HHHHHHHHHHHcCCCEEEEecc
Confidence 666666666554 444 456787 9999999999999999988753
No 59
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=70.53 E-value=13 Score=32.76 Aligned_cols=100 Identities=8% Similarity=-0.027 Sum_probs=61.5
Q ss_pred eEEEEE--CCCcchHHHHHHHHHhcCC--CCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 10 KVMVIA--DPTRESAGALQYALSHVLL--EEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 10 ~IlVav--D~s~~s~~al~~A~~la~~--~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
.+++=+ |..-....||..|+..+.. .+..|..+++.++..+. .. ........-..
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~--------~~-------------~~~~~r~~Fl~ 88 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILD--------WM-------------QVGANRWRFLQ 88 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGG--------CT-------------TSCHHHHHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhc--------cc-------------CCCHHHHHHHH
Confidence 435544 6666667788888877643 34569999997644200 00 00000011123
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
+.+..+.+.+++.+ +.+ .+..|+ +.+.|.+.+++++++.|+.-..
T Consensus 89 ~sL~~L~~~L~~~G----~~L--~v~~g~-~~~~l~~l~~~~~~~~v~~~~~ 133 (543)
T 2wq7_A 89 QTLEDLDNQLRKLN----SRL--FVVRGK-PAEVFPRIFKSWRVEMLTFETD 133 (543)
T ss_dssp HHHHHHHHHHHHTT----CCC--EEEESC-HHHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHHHHCC----CeE--EEEeCC-HHHHHHHHHHHcCCCEEEEecC
Confidence 55666666666554 444 446687 9999999999999999998743
No 60
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=70.08 E-value=28 Score=26.75 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 045490 117 AAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.+.+.+..+++++|++|+..-+
T Consensus 71 ~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 71 IEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp HHHHHHHHHHTTCSEEEESSCC
T ss_pred hHHHHHHHHHhCCCEEEEeCCc
Confidence 4788999999999999998754
No 61
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=69.71 E-value=25 Score=29.89 Aligned_cols=34 Identities=6% Similarity=0.091 Sum_probs=28.5
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.++|+|++.+..+|..++.++.+. +.+|+.+|+.
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd 38 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLAN 38 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEE
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 468999999999999888887653 6689999994
No 62
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=68.91 E-value=6.9 Score=31.02 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 119 IILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 119 ~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
.+++.+++.++|++|+.+.+ ...-|. .-+.+++....+|++|+.+.+
T Consensus 55 ~~~~~~~~~~pDfvI~isPN---~a~PGP-------------~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 55 MALDIAEDFEPDFIVYGGPN---PAAPGP-------------SKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHHHHHHCCSEEEEECSC---TTSHHH-------------HHHHHHHHTSSSCEEEEEEGG
T ss_pred HhhhhhhhcCCCEEEEECCC---CCCCCc-------------hHHHHHHHhCCCCEEEEcCCc
Confidence 34445588899999999876 112343 678889999999999996543
No 63
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=68.88 E-value=40 Score=26.40 Aligned_cols=37 Identities=8% Similarity=-0.138 Sum_probs=29.6
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
+.+|+|++.+..+|...+..+..+... +..+.++|+.
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iD 77 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFID 77 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEEC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEec
Confidence 458999999999999888888777554 4578888983
No 64
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=67.53 E-value=28 Score=26.82 Aligned_cols=86 Identities=20% Similarity=0.109 Sum_probs=50.9
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
.+..||.|-+.++..+..++-.+.. ...+.+|.++-.. + . .
T Consensus 10 ~~~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~Vis~---------------~--------------~-a------- 50 (215)
T 3da8_A 10 SAPARLVVLASGTGSLLRSLLDAAV--GDYPARVVAVGVD---------------R--------------E-C------- 50 (215)
T ss_dssp CSSEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEEEEES---------------S--------------C-C-------
T ss_pred CCCcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEEEEeC---------------C--------------c-h-------
Confidence 4567899999999888887766542 2345577665331 0 0 0
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecC--C--cHHHHHHHHHHHcCCCEEEEecCC
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTES--G--NKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g--~--~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.. .+.+++. ++++...-... + .-.+++++..+++++|++|+..-+
T Consensus 51 ~~----~~~A~~~----gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 51 RA----AEIAAEA----SVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp HH----HHHHHHT----TCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HH----HHHHHHc----CCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 11 3333333 46663321111 1 014678889999999999997643
No 65
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=66.85 E-value=49 Score=26.70 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=24.9
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
..+++|++.+ -+|.-++..+. +.+..++.+|.
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll~----~~G~~v~~v~~ 210 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLMM----KRGVEVIPVYI 210 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHHH----HBTCEEEEEEE
T ss_pred CCcEEEEEeC-CcHHHHHHHHH----hCCCeEEEEEE
Confidence 4699999999 88876654443 35789999999
No 66
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=66.49 E-value=36 Score=28.74 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=28.0
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
++|+|++.+..+|..++.++.+. .+..|+.+|+.
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd 34 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTAD 34 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEE
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEe
Confidence 47999999999999998887654 25689999994
No 67
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=66.31 E-value=7.4 Score=34.39 Aligned_cols=95 Identities=16% Similarity=0.003 Sum_probs=54.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|+.-....||..|+..+. .+..|+.|+|.++..+. .+ ........-..+.+..+.+.+
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~--------~~-------------~~~~~r~~Fl~~sL~~L~~~L 70 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAG--------TK-------------NVGYNRMRFLLDSLQDIDDQL 70 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSC--------ST-------------TCCHHHHHHHHHHHHHHHHHG
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhc--------cC-------------CCCHHHHHHHHHHHHHHHHHH
Confidence 555555667877776653 44589999997654211 00 000000011224445555554
Q ss_pred HHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEec
Q 045490 96 EVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
++.. ..++.. .+..|+ +.+.|.+.+++++++.|+.-.
T Consensus 71 ~~~~-~~G~~L--~v~~G~-~~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 71 QAAT-DGRGRL--LVFEGE-PAYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp GGSC-SSSSCC--EEEESC-HHHHHHHHHHHHCEEEECEEC
T ss_pred HHhh-cCCCeE--EEEeCC-HHHHHHHHHHHcCCCEEEEcc
Confidence 4430 003444 456788 999999999999999998754
No 68
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=65.98 E-value=51 Score=28.52 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=27.8
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
++++|++.+..+|..++..+... +.+++++|+.
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd 242 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVD 242 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEE
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEe
Confidence 68999999999999888776554 6799999994
No 69
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=64.62 E-value=43 Score=28.60 Aligned_cols=36 Identities=8% Similarity=0.107 Sum_probs=28.5
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.|.++|+|++.+.-+|..++.|+.+. +.+|+.+++.
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke~----G~eViavt~d 47 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCEK----GFDVIAYVAN 47 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEE
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHHC----CCeEEEEEEE
Confidence 46789999999999999888887543 6789999984
No 70
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=64.08 E-value=48 Score=27.95 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=28.0
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
..+++|++.+..+|..++..+.. .+.+++.+|+.
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~ 220 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFH 220 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEE
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEe
Confidence 57899999999999988877654 36789999994
No 71
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=60.99 E-value=21 Score=30.81 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=55.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|..-....||..|+... ..|..+++.++..+. .+ ........-..+.+..+.+.+
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~--------~~-------------~~~~~r~~fl~~sL~~L~~~L 66 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQ--------SA-------------DMAPARVAYLQGCLQELQQRY 66 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHT--------CT-------------TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhc--------CC-------------CCCHHHHHHHHHHHHHHHHHH
Confidence 55555667888887642 268888887543100 00 000000111235566666666
Q ss_pred HHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 96 EVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
++.+ +.+ .+..|+ +.+.|.+.+++++++.|+.-..
T Consensus 67 ~~~G----~~L--~v~~g~-~~~~l~~l~~~~~~~~v~~~~~ 101 (484)
T 1owl_A 67 QQAG----SRL--LLLQGD-PQHLIPQLAQQLQAEAVYWNQD 101 (484)
T ss_dssp HHHT----SCE--EEEESC-HHHHHHHHHHHTTCSEEEEECC
T ss_pred HHCC----CeE--EEEeCC-HHHHHHHHHHHcCCCEEEEecc
Confidence 6654 444 456788 9999999999999999998653
No 72
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=60.56 E-value=53 Score=24.88 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=27.4
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
++++|++.+..+|..++.++.+.. .+|+.+|+.
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----~~v~av~~~ 35 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----DDVHCITFD 35 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----SEEEEEEEE
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----CCEEEEEEE
Confidence 689999999999998888876653 588889984
No 73
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=59.68 E-value=57 Score=25.01 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=24.9
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
.+||.|-+.++.....++-.+..-- .+.+|.++-.
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~~~--~~~eI~~Vis 39 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAVIS 39 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEEEE
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEEEe
Confidence 4689999999988888887765532 4556666544
No 74
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=58.81 E-value=53 Score=26.45 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=53.8
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCC------------------CCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCC
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLL------------------EEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPA 70 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~------------------~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (200)
.+|+|++.+..+|...+..+...+.. .+..+.++|+.+..
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~---------------------- 111 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE---------------------- 111 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT----------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC----------------------
Confidence 58999999999998888776654211 13568888883211
Q ss_pred CCCCccccccccchHHHHHHHHHHHHHhCCCcceEEEEEEec---CCcHHHHHHHHHHH-cCCCEEEEecCC
Q 045490 71 SLSSSSEGAAAPGGEDFLEEMKQACEVAKPKLRVHVEKVHTE---SGNKAAIILSQSTA-HGVDLLIIGQRR 138 (200)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~---g~~~~~~I~~~a~~-~~~dllVmG~~~ 138 (200)
...+..+-+.+.++++ ++++.+.... +....+.+.++++. -..+.|++|.|.
T Consensus 112 ------------~fpet~~fv~~~~~~y----gl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 112 ------------TFPTLENFVLETSERY----CLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp ------------CCHHHHHHHHHHHHHT----TEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred ------------CCHHHHHHHHHHHHHc----CCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 0123333334444444 3555322111 12256677777766 367899999875
No 75
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=58.23 E-value=42 Score=28.70 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHH---HHcCC-CEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQS---TAHGV-DLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a---~~~~~-dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
-..++++...+++.+ +++++.+..-+...+.+.+++ ++.++ +.+|.++.+ .+
T Consensus 278 ~~~~~~a~~~l~~~g----i~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~------~a-------------- 333 (425)
T 2h31_A 278 LGHCEKIKKACGNFG----IPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGR------SN-------------- 333 (425)
T ss_dssp HHHHHHHHHHHHHTT----CCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCS------SC--------------
T ss_pred HHHHHHHHHHHHHcC----CceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCc------cc--------------
Confidence 467788888887764 667777776554444444444 45667 577777655 12
Q ss_pred ChHHHHHcCCCccEEEEecC
Q 045490 161 DTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~ 180 (200)
....-+.-.+.+||+-|+..
T Consensus 334 ~Lpgvva~~t~~PVIgvP~~ 353 (425)
T 2h31_A 334 GLGPVMSGNTAYPVISCPPL 353 (425)
T ss_dssp CHHHHHHHHCSSCEEECCCC
T ss_pred chHhHHhccCCCCEEEeeCc
Confidence 45555777889999999753
No 76
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=57.59 E-value=71 Score=27.85 Aligned_cols=103 Identities=11% Similarity=0.081 Sum_probs=59.6
Q ss_pred CeEEEEE--CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHH
Q 045490 9 RKVMVIA--DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGED 86 (200)
Q Consensus 9 ~~IlVav--D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
+++|+=+ |..-....||..|+.. +..|..|++.++..+. .+....+ .........-..+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~--------~~~~~~~-------~~~~~~r~~Fl~~ 100 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFH--------TTHFFNF-------PKTGALRGGFLME 100 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGS--------BCTTTCC-------BSSCHHHHHHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhc--------ccccccC-------CCCCHHHHHHHHH
Confidence 3445544 6666667788888764 3478899997543210 0000000 0000000111235
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
.+..+.+.+++.+ +.+ .+..|+ +.+.|.+.+++++++.|+.-..
T Consensus 101 sL~~L~~~L~~~G----~~L--~v~~g~-~~~~l~~l~~~~~~~~V~~~~~ 144 (525)
T 2j4d_A 101 CLVDLRKNLMKRG----LNL--LIRSGK-PEEILPSLAKDFGARTVFAHKE 144 (525)
T ss_dssp HHHHHHHHHHHTT----CCC--EEEESC-HHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHHHHcC----CeE--EEEeCC-HHHHHHHHHHHcCCCEEEEecc
Confidence 5666666666554 444 446687 9999999999999999998753
No 77
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=56.27 E-value=28 Score=26.98 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=17.3
Q ss_pred ChHHHHHcCCCccEEEEecCCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
+++..+-++.++||+-++....
T Consensus 72 gta~~Lr~~~~iPVV~I~vs~~ 93 (225)
T 2pju_A 72 SNGAYLKSRLSVPVILIKPSGY 93 (225)
T ss_dssp HHHHHHHTTCSSCEEEECCCHH
T ss_pred hHHHHHHhhCCCCEEEecCCHH
Confidence 4788888888999999965544
No 78
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=55.90 E-value=15 Score=27.54 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=29.8
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
|.+||++++-++-.+.++++....+.+ .+.+|+++-.
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T 37 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQ-HFDEVNILFS 37 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEc
Confidence 568999999999999999988777754 4777777654
No 79
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=55.46 E-value=50 Score=24.72 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=17.5
Q ss_pred ChHHHHHcCCCccEEEEecCCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
+++..+-++.++||+-++....
T Consensus 60 gta~~lr~~~~iPVV~I~~s~~ 81 (196)
T 2q5c_A 60 ATSDYIKKSVSIPSISIKVTRF 81 (196)
T ss_dssp HHHHHHHTTCSSCEEEECCCHH
T ss_pred hHHHHHHHhCCCCEEEEcCCHh
Confidence 4788888888999999976554
No 80
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=53.08 E-value=71 Score=25.68 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=27.8
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.++++|++.+..+|..++..+... .+.+++.+|+.
T Consensus 20 ~~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd 54 (308)
T 2dpl_A 20 DSKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVN 54 (308)
T ss_dssp TSCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEE
T ss_pred CCCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEc
Confidence 368999999999999887776554 24689999994
No 81
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=51.45 E-value=79 Score=24.15 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=51.3
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHH
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFL 88 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (200)
+||.|-+.++..+..+|-.+... ...+++|.++-... | .
T Consensus 3 ~riavl~Sg~Gsnl~ali~~~~~-~~l~~eI~~Visn~--------------~-------------~------------- 41 (211)
T 3p9x_A 3 KRVAIFASGSGTNAEAIIQSQKA-GQLPCEVALLITDK--------------P-------------G------------- 41 (211)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHT-TCCSSEEEEEEESC--------------S-------------S-------------
T ss_pred CEEEEEEeCCchHHHHHHHHHHc-CCCCcEEEEEEECC--------------C-------------C-------------
Confidence 58888888888888888777643 23456777765510 0 0
Q ss_pred HHHHHHHHHhCCCcceEEEEEEecC-Cc---HHHHHHHHHHHcCCCEEEEecCC
Q 045490 89 EEMKQACEVAKPKLRVHVEKVHTES-GN---KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~v~v~~~~~~g-~~---~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
....+.+++. ++++...-... .+ -.+.+++..+++++|++|+..-+
T Consensus 42 a~v~~~A~~~----gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 42 AKVVERVKVH----EIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp SHHHHHHHTT----TCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred cHHHHHHHHc----CCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 0233344433 46663221111 11 14678899999999999998744
No 82
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=50.89 E-value=53 Score=21.99 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHH
Q 045490 83 GGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTA 126 (200)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~ 126 (200)
+.+..++++....+..+ +++.+..-.. |....+-+.+++
T Consensus 85 qdqnrleefsrevrrrg----fevrtvtspd-dfkkslerlire 123 (134)
T 2l69_A 85 QDQNRLEEFSREVRRRG----FEVRTVTSPD-DFKKSLERLIRE 123 (134)
T ss_dssp SCHHHHHHHHHHHHHTT----CCEEEESSHH-HHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHhcC----ceEEEecChH-HHHHHHHHHHHH
Confidence 44567777777666554 5564433332 366666666665
No 83
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=50.73 E-value=17 Score=31.86 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=27.6
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
++++|++.+..+|..++..+... .+.+++++|+.
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd 264 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVD 264 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEEC
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEec
Confidence 78999999999999887776554 35689999993
No 84
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=50.53 E-value=29 Score=30.53 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=60.7
Q ss_pred CCeEEEEE--CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchH
Q 045490 8 SRKVMVIA--DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGE 85 (200)
Q Consensus 8 ~~~IlVav--D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
.+.++|=. |+.-....||..|+. .+..|+.|+|.++..+. +.+.. ..++. .........-..
T Consensus 4 ~~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~---------~~~~~-~~~g~--~~~g~~r~~Fl~ 67 (537)
T 3fy4_A 4 GSGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYME---------SDPSA-FSPGS--SRAGVNRIRFLL 67 (537)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHS---------CCTTS-SSSBC--SSCBHHHHHHHH
T ss_pred CCcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhc---------ccccc-ccccc--ccCCHHHHHHHH
Confidence 34555555 666666678887764 34689999998653211 00000 00000 000000111123
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEec
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
+.+..+.+.+++.+ +.. .+..|+ +.+.|.+.+++++++-|+.-.
T Consensus 68 ~sL~~L~~~L~~~G----~~L--~v~~G~-~~~vl~~L~~~~~~~~V~~n~ 111 (537)
T 3fy4_A 68 ESLKDLDSSLKKLG----SRL--LVFKGE-PGEVLVRCLQEWKVKRLCFEY 111 (537)
T ss_dssp HHHHHHHHHHHHTT----CCC--EEEESC-HHHHHHHHHTTSCEEEEEECC
T ss_pred HHHHHHHHHHHHcC----Cce--EEEECC-HHHHHHHHHHHcCCCEEEEec
Confidence 55666666666554 333 456788 999999999999999999875
No 85
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=49.79 E-value=24 Score=26.27 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=28.5
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
.|.+||++++-++-.+.++++....+.+ .+.+|+++-.
T Consensus 3 ~m~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~T 40 (175)
T 3qjg_A 3 AMGENVLICLCGSVNSINISHYIIELKS-KFDEVNVIAS 40 (175)
T ss_dssp --CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEEC
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 4568999999999999998887766654 5777776544
No 86
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=48.68 E-value=41 Score=23.54 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=25.7
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++++ +..-.+.+.+.+++.+++.++|+|.+....
T Consensus 31 G~~V--i~lG~~~p~e~~v~~a~~~~~d~v~lS~~~ 64 (137)
T 1ccw_A 31 GFNV--VNIGVLSPQELFIKAAIETKADAILVSSLY 64 (137)
T ss_dssp TCEE--EEEEEEECHHHHHHHHHHHTCSEEEEEECS
T ss_pred CCEE--EECCCCCCHHHHHHHHHhcCCCEEEEEecC
Confidence 4555 322223489999999999999999999754
No 87
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=47.10 E-value=40 Score=24.39 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=25.9
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+++| +..-.+.+.+.+++.+++.++|+|.+....
T Consensus 46 G~eV--i~lG~~~p~e~lv~aa~~~~~diV~lS~~~ 79 (161)
T 2yxb_A 46 GFEV--VYTGLRQTPEQVAMAAVQEDVDVIGVSILN 79 (161)
T ss_dssp TCEE--ECCCSBCCHHHHHHHHHHTTCSEEEEEESS
T ss_pred CCEE--EECCCCCCHHHHHHHHHhcCCCEEEEEeec
Confidence 4555 333334588999999999999999998854
No 88
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=45.97 E-value=35 Score=29.11 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=65.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|..-....||..|+.. +..|..+++.++..++ .+ . ........-..+.+..+.+.+
T Consensus 10 DLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~--------~~--~----------~~~~~r~~Fl~~sL~~L~~~L 65 (440)
T 2e0i_A 10 DLRLEDNTGLNYALSE----CDRVIPVFIADPRQLI--------NN--P----------YKSEFAVSFMINSLLELDDEL 65 (440)
T ss_dssp CCCSSSCHHHHHHHHH----SSEEEEEEEECHHHHS--------SC--T----------TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhc----CCCEEEEEEeChhhhc--------cC--C----------cCCHHHHHHHHHHHHHHHHHH
Confidence 4444555678888763 4579999997543100 00 0 000000111235555666665
Q ss_pred HHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccccCCCccCCCCcChHHHHHcCCCccE
Q 045490 96 EVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR-SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNC 174 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~-~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pV 174 (200)
++.+ +.+ .+..|+ +.+.|.+.++ +++.|+.-..- ......- ....+.+...+|++
T Consensus 66 ~~~G----~~L--~v~~g~-~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd---------------~~v~~~l~~~gi~~ 121 (440)
T 2e0i_A 66 RKKG----SRL--NVFFGE-AEKVVSRFFN--KVDAIYVNEDYTPFSISRD---------------EKIRKVCEENGIEF 121 (440)
T ss_dssp HTTT----CCC--EEEESC-HHHHHHHHCT--TCSEEEEECCCSHHHHHHH---------------HHHHHHHHTTTCEE
T ss_pred HHcC----CeE--EEEECC-HHHHHHHHHc--CCCEEEEecccChHHHHHH---------------HHHHHHHHHcCceE
Confidence 5543 444 456788 9999999998 89999986532 1111111 23344566678888
Q ss_pred EEEecC
Q 045490 175 VGVQRK 180 (200)
Q Consensus 175 Lvv~~~ 180 (200)
..+...
T Consensus 122 ~~~~~~ 127 (440)
T 2e0i_A 122 KAYEDY 127 (440)
T ss_dssp EEECCS
T ss_pred EEecCC
Confidence 877654
No 89
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=44.79 E-value=27 Score=23.42 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
++.+.++++..++++ +.+.+.--.- ...+.|-+.++++++..+|+--.
T Consensus 12 eetlrkfkdiikkng----fkvrtvrspq-elkdsieelvkkynativvvvvd 59 (134)
T 2l69_A 12 EETLRKFKDIIKKNG----FKVRTVRSPQ-ELKDSIEELVKKYNATIVVVVVD 59 (134)
T ss_dssp HHHHHHHHHHHHHTT----CEEEEECSHH-HHHHHHHHHTTCCCCEEEEEECS
T ss_pred HHHHHHHHHHHHhcC----ceEEEecCHH-HHHHHHHHHHHHhCCeEEEEEEc
Confidence 467888888888764 5554332222 25677778888888888777544
No 90
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=42.38 E-value=63 Score=24.13 Aligned_cols=34 Identities=6% Similarity=-0.037 Sum_probs=25.9
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++++ +..-.+.+.+.+++.+++.++|+|.+....
T Consensus 116 G~~v--~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~ 149 (210)
T 1y80_A 116 GFTV--YNLGVDIEPGKFVEAVKKYQPDIVGMSALL 149 (210)
T ss_dssp TCEE--EECCSSBCHHHHHHHHHHHCCSEEEEECCS
T ss_pred CCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 4555 333334489999999999999999998754
No 91
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=42.18 E-value=1.5e+02 Score=24.60 Aligned_cols=134 Identities=13% Similarity=0.044 Sum_probs=67.5
Q ss_pred CeEEEEECC-Ccc-hHHHHHHHHHhcCC---CCC-eEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCcccccccc
Q 045490 9 RKVMVIADP-TRE-SAGALQYALSHVLL---EED-ELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAP 82 (200)
Q Consensus 9 ~~IlVavD~-s~~-s~~al~~A~~la~~---~~a-~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (200)
.+++|-+.+ |-+ ...++++|..++.. ..+ -+.++-++-. .| .++..|.+..........-
T Consensus 49 ~rllVIaGPCSied~eq~leyA~~Lk~~~~~~~d~l~~vmR~y~~------------KP--RTs~g~kGL~nDP~ld~s~ 114 (346)
T 3tqk_A 49 DRVAVVVGPCSIHDPAAAIEYATKLKEQVKKFHKDILIIMRVYFE------------KP--RTTIGWKGFINDPDLDNSY 114 (346)
T ss_dssp CSEEEEEECSSCSCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCC------------CC--CSSCSCCCTTTCTTSSSCC
T ss_pred CCEEEEEecCccCCHHHHHHHHHHHHHHHhhhcccceEEeeeccc------------CC--CCCcCccccccCCCCCCCc
Confidence 467777763 333 45677888777643 223 3445555311 11 1222222221122222222
Q ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcCh
Q 045490 83 GGEDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDT 162 (200)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~ 162 (200)
+.++-+.-+++++.+. .+.++++-+++..-.+ .+ ++.++ +|++-+|+|..-.. .
T Consensus 115 ~i~~GL~~~R~ll~~~-~e~GLpiatE~ld~~~-~q----yv~dl-vs~~aIGARt~enq-------------------~ 168 (346)
T 3tqk_A 115 NINKGLRLARNLLSDL-TNMGLPCATEFLDVIT-PQ----YFAEL-ITWGAIGARTVESQ-------------------V 168 (346)
T ss_dssp CHHHHHHHHHHHHHHH-HHTTCCEEEECCSSSG-GG----GTGGG-CSEEEECGGGTTCH-------------------H
T ss_pred cHHHHHHHHHHHHHHH-HhcCCCEEEEecCcCC-HH----HHHHH-hheeeeCcccccCH-------------------H
Confidence 2344444444433221 2235777767776552 22 34344 79999999872211 2
Q ss_pred HHHHHcCCCccEEEEecCCC
Q 045490 163 AEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 163 ~~~vl~~s~~pVLvv~~~~~ 182 (200)
-.+++...+|||++=+..+-
T Consensus 169 hre~asg~s~PVg~Kngt~g 188 (346)
T 3tqk_A 169 HRELASGLSASIGFKNATNG 188 (346)
T ss_dssp HHHHHTTCSSEEEEECCTTC
T ss_pred HHHHhcCCCCceEEeCCCCC
Confidence 23456678999998866654
No 92
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=41.94 E-value=17 Score=25.95 Aligned_cols=50 Identities=12% Similarity=-0.018 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecC----CCCC---cccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQR----RSLS---NAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~----~~~~---~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
..+.|.+.+++++++.||+|-. |..+ +... ..++++-++.++||..+.-.
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~---------------~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARAR---------------KFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHH---------------HHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHH---------------HHHHHHHHHhCCCEEEEcCC
Confidence 4789999999999999999942 2111 0001 24555555568999999533
No 93
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=41.83 E-value=45 Score=25.52 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=29.1
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
.++|+|++-++-.+.++++..-.+.+ .+.+|+++-.
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~T 39 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLIS 39 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 38999999999999999988777755 4778777654
No 94
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=41.65 E-value=6.8 Score=28.47 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCCEEEEec
Q 045490 116 KAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~ 136 (200)
..+.|.+.+++++++.||+|-
T Consensus 43 ~~~~l~~li~~~~~~~ivVGl 63 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGF 63 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEee
Confidence 678899999999999999994
No 95
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=40.83 E-value=16 Score=31.47 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEe----cCCcHHHHHHHHHHHcCCCEEEEec
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHT----ESGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~----~g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
.+.+..+.+.+++.+ +.+ .+. .|+ +.+.|.+.+++++++.|+.-.
T Consensus 55 ~~sL~~L~~~L~~~G----~~L--~v~~~~~~g~-~~~~l~~l~~~~~~~~v~~~~ 103 (471)
T 1dnp_A 55 NAQLNGLQIALAEKG----IPL--LFREVDDFVA-SVEIVKQVCAENSVTHLFYNY 103 (471)
T ss_dssp HHHHHHHHHHHHHTT----CCE--EEEECSSHHH-HHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHCC----CeE--EEEEccCCCC-HHHHHHHHHHHcCCCEEEEec
Confidence 355666666666554 444 334 677 999999999999999999854
No 96
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=39.81 E-value=35 Score=26.13 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=27.3
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
...++|+|++-++-.+.++++....+.+ .+ +|+++--
T Consensus 17 l~~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv~T 53 (209)
T 1mvl_A 17 PRKPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAVVT 53 (209)
T ss_dssp --CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEEEC
T ss_pred cCCCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEEEc
Confidence 3468999999999998888888777755 44 7766544
No 97
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=39.53 E-value=1e+02 Score=24.81 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEE-ecCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLII-GQRR 138 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVm-G~~~ 138 (200)
.+..+++...+++.+ ++++........-+..+.+.+...++|+||+ |.-|
T Consensus 41 ~~~~~~i~~~L~~~g----~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG 91 (337)
T 2qv7_A 41 KRELPDALIKLEKAG----YETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG 91 (337)
T ss_dssp HHHHHHHHHHHHHTT----EEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH
T ss_pred HHHHHHHHHHHHHcC----CeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch
Confidence 355667777776653 6665454444323445555555567887776 4444
No 98
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=38.91 E-value=1.3e+02 Score=23.12 Aligned_cols=32 Identities=6% Similarity=0.023 Sum_probs=26.0
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
.+|+|++.+..+|...+..+.... ..|.++|+
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~i 77 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILT 77 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEEC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEe
Confidence 589999999999998887777664 35778888
No 99
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=38.35 E-value=1.3e+02 Score=23.73 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEec
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
.+..+++...+++.+ +++++...+...-+..+.+.+.+ ++|+||+..
T Consensus 25 ~~~~~~i~~~l~~~~----~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~G 71 (304)
T 3s40_A 25 HTNLTKIVPPLAAAF----PDLHILHTKEQGDATKYCQEFAS-KVDLIIVFG 71 (304)
T ss_dssp HHHHHHHHHHHHHHC----SEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEE
T ss_pred HHHHHHHHHHHHHcC----CeEEEEEccCcchHHHHHHHhhc-CCCEEEEEc
Confidence 345566777776654 55655555544345566666544 788877643
No 100
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=36.68 E-value=1.5e+02 Score=23.03 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=48.9
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHH
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFL 88 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (200)
.|++|.+.+..+|..++..+.+ .+-+|+.++..-+.. . ..+ ....... +.
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~----~G~eV~~L~~~~~~~----------~---~s~-----------~~h~~~~-e~- 54 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIK----NRFSVKFLVTMVSEN----------E---ESY-----------MYHTINA-NL- 54 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEEECC--------------------------------CCSS-SH-
T ss_pred CEEEEEecCcHHHHHHHHHHHH----cCCeEEEEEEEcCCC----------C---Ccc-----------ccCCccH-HH-
Confidence 4899999999999988776643 456777766532111 0 000 0000011 11
Q ss_pred HHHHHHHHHhCCCcceEEEEEEecCC--cHHHHHHHHHHHcCCCEEEEec
Q 045490 89 EEMKQACEVAKPKLRVHVEKVHTESG--NKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~v~v~~~~~~g~--~~~~~I~~~a~~~~~dllVmG~ 136 (200)
++..++.. +++..+.-..|. +-.+.+.+..++.+++-+|.|.
T Consensus 55 --a~~~A~~L----GIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gd 98 (237)
T 3rjz_A 55 --TDLQARAL----GIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGA 98 (237)
T ss_dssp --HHHHHHHH----TCCEEEEEC------CHHHHHHHHTTSCCSEEECC-
T ss_pred --HHHHHHHc----CCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECC
Confidence 22223333 355554444443 2356677777777899999996
No 101
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=36.16 E-value=75 Score=26.79 Aligned_cols=86 Identities=14% Similarity=-0.014 Sum_probs=53.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHHHHHHHHHHH
Q 045490 16 DPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGEDFLEEMKQAC 95 (200)
Q Consensus 16 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (200)
|..-....||..|+.. + .|..+++.++..+ ........-..+.+..+.+.+
T Consensus 11 DlRl~Dn~aL~~A~~~----~-~v~~vfi~d~~~~------------------------~~~~~r~~fl~~sL~~l~~~L 61 (420)
T 2j07_A 11 DLRLHDHPALLEALAR----G-PVVGLVVLDPNNL------------------------KTTPRRRAWFLENVRALREAY 61 (420)
T ss_dssp CCCSTTCHHHHHHHTT----S-CEEEEEEECHHHH------------------------SSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHhC----C-CEEEEEEECCccc------------------------cCCHHHHHHHHHHHHHHHHHH
Confidence 5555556678777653 2 6888888643210 000000011235566666666
Q ss_pred HHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecC
Q 045490 96 EVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQR 137 (200)
Q Consensus 96 ~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~ 137 (200)
++.+ +.+ .+..|+ +.+.|.+.+++++++.|+.-..
T Consensus 62 ~~~g----~~l--~~~~g~-~~~~l~~l~~~~~~~~v~~~~~ 96 (420)
T 2j07_A 62 RARG----GAL--WVLEGL-PWEKVPEAARRLKAKAVYALTS 96 (420)
T ss_dssp HHTT----CCE--EEEESC-HHHHHHHHHHHTTCSEEEEECC
T ss_pred HHCC----CeE--EEEeCC-HHHHHHHHHHHcCCCEEEEecc
Confidence 6554 444 456788 9999999999999999999653
No 102
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=34.81 E-value=68 Score=24.22 Aligned_cols=36 Identities=11% Similarity=-0.027 Sum_probs=28.5
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
+||++++-++-.+.++++..-.+.+..+.+|+++--
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~T 36 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMS 36 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 489999999999999988887776544778877654
No 103
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=34.13 E-value=77 Score=25.97 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCc---HHHHHHHHHHHcCCCEEE-EecCCCCCcccccccccCCCccCCCCcCh
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGN---KAAIILSQSTAHGVDLLI-IGQRRSLSNAILGYRRAGGSLRGSKGVDT 162 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~---~~~~I~~~a~~~~~dllV-mG~~~~~~~~~~G~~~~~~~~~~~~~~s~ 162 (200)
..+++.+.+++. ++++...+..|.. -.+.+.+.+++.++|+|| +|... .+ ++
T Consensus 46 ~~~~v~~~L~~~----g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGs------v~--------------D~ 101 (370)
T 1jq5_A 46 AGHTIVNELKKG----NIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGK------TL--------------DT 101 (370)
T ss_dssp THHHHHHHHHTT----TCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH------HH--------------HH
T ss_pred HHHHHHHHHHHc----CCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChH------HH--------------HH
Confidence 345555555543 3555334445541 345666777888999988 66543 22 46
Q ss_pred HHHHHcCCCccEEEEecCCC
Q 045490 163 AEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 163 ~~~vl~~s~~pVLvv~~~~~ 182 (200)
+..+.-...+|++.|+-...
T Consensus 102 aK~iA~~~~~p~i~IPTTa~ 121 (370)
T 1jq5_A 102 AKAVADELDAYIVIVPTAAS 121 (370)
T ss_dssp HHHHHHHHTCEEEEEESSCC
T ss_pred HHHHHHhcCCCEEEeccccC
Confidence 66666556899999987654
No 104
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=33.62 E-value=59 Score=24.34 Aligned_cols=35 Identities=9% Similarity=-0.021 Sum_probs=27.9
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
++|++++-++-.+.++++..-.+.+. +.+|+++-.
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T 36 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVIS 36 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 79999999999988888887777554 777776544
No 105
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=33.33 E-value=45 Score=24.93 Aligned_cols=36 Identities=11% Similarity=0.006 Sum_probs=26.8
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
|..++|+|++.+..+|..++..+.. .+.++.++|+.
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~ 39 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITIN 39 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEE
T ss_pred ccCCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEe
Confidence 3447999999999999877755433 45689999984
No 106
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=33.17 E-value=69 Score=21.63 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=24.5
Q ss_pred cCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 127 HGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 127 ~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
.++|+|++|.+- +..+. ..+..+...++||.++...
T Consensus 52 ~~~DvvLLgPQV---~y~~~---------------~ik~~~~~~~ipV~vI~~~ 87 (108)
T 3nbm_A 52 GVYDLIILAPQV---RSYYR---------------EMKVDAERLGIQIVATRGM 87 (108)
T ss_dssp GGCSEEEECGGG---GGGHH---------------HHHHHHTTTTCEEEECCHH
T ss_pred cCCCEEEEChHH---HHHHH---------------HHHHHhhhcCCcEEEeCHH
Confidence 358999999864 22232 4455666778999999754
No 107
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=32.60 E-value=1.7e+02 Score=22.58 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=54.6
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHH
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGED 86 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
..+..++++.+.+ ..+++...+.-...++.|+++...+. .+..++
T Consensus 7 ~~~~~~~tlGFd~--~~~vral~~~g~~~~d~ViLv~~~~~---------------------------------~~~~~~ 51 (244)
T 2wte_A 7 HMKSYFVTMGFNE--TFLLRLLNETSAQKEDSLVIVVPSPI---------------------------------VSGTRA 51 (244)
T ss_dssp -CCEEEECCCSCC--HHHHHHHHHTTCCTTSEEEEEEESSC---------------------------------CHHHHH
T ss_pred hhhhheeccCcCh--HHHHHHHHHhCCCCCCEEEEEeCCCc---------------------------------chhHHH
Confidence 4566777778775 45566666666667789999776210 135668
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHH---HHHHcCCCEEE
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILS---QSTAHGVDLLI 133 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~---~a~~~~~dllV 133 (200)
.++.+++.+...+ .++++...++-.|..+.+.+ .+....-+++|
T Consensus 52 A~~~i~~~l~~~~---~i~~e~~~vd~~df~~~v~~i~~~i~~~~~~iiv 98 (244)
T 2wte_A 52 AIESLRAQISRLN---YPPPRIYEIEITDFNLALSKILDIILTLPEPIIS 98 (244)
T ss_dssp HHHHHHHHHHHHT---CCCEEEEEECCCSHHHHHHHHHHHHTTSCSSEEE
T ss_pred HHHHHHHHHHHcC---CCceEEEEECCccHHHHHHHHHHHHhhcCCcEEE
Confidence 8888999888773 23455555555556655444 44333226666
No 108
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=32.59 E-value=2.5e+02 Score=24.41 Aligned_cols=51 Identities=6% Similarity=-0.213 Sum_probs=33.4
Q ss_pred EecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHH---HcCCCccEEEEecCCC
Q 045490 110 HTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYL---IQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 110 ~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~v---l~~s~~pVLvv~~~~~ 182 (200)
+..+.| ...+.+.+++.++||++-++++ . -.+.+. .++..+|.+.+.-|-.
T Consensus 421 v~~~~D-~~~l~~~i~~~~pDLlig~s~~------k---------------~~a~~~~~~~~~~giP~irigfPi~ 474 (523)
T 3u7q_B 421 VYIGKD-LWHLRSLVFTDKPDFMIGNSYG------K---------------FIQRDTLHKGKEFEVPLIRIGFPIF 474 (523)
T ss_dssp EEESCC-HHHHHHHHHHTCCSEEEECTTH------H---------------HHHHHHHHHCGGGCCCEEECSSCCC
T ss_pred EEECCC-HHHHHHHHHhcCCCEEEECccH------H---------------HHHHHhhcccccCCCceEEecCCee
Confidence 344543 5667788888999999988876 0 234434 2333899888765544
No 109
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=32.46 E-value=1.6e+02 Score=22.20 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=23.8
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
+||.|-+.++..+..+|-.+..- ...+.+|.++-.
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~~~~~~I~~Vvs 35 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-PNSSAQIDIVIS 35 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-TTCSCEEEEEEE
T ss_pred CeEEEEEECCchHHHHHHHHHhc-CCCCcEEEEEEe
Confidence 47889999998888888665432 223567766655
No 110
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=32.46 E-value=45 Score=26.41 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEec---------CCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCC
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTE---------SGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGS 157 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~---------g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~ 157 (200)
.+-.+...|+..+ .++.-+--. ....++.|++.++..+++|+++|..+
T Consensus 85 QiGAL~a~a~~~G----~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~g------------------- 141 (252)
T 1xw8_A 85 QIGALATIARAQG----GVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAG------------------- 141 (252)
T ss_dssp HHHHHHHHHHHTT----CCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEETT-------------------
T ss_pred HHHHHHHHHHHcC----CEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC-------------------
Confidence 4445666666654 444322222 22478999999999999999999776
Q ss_pred CCcChHHHHHcCCCccEEEE
Q 045490 158 KGVDTAEYLIQNSKCNCVGV 177 (200)
Q Consensus 158 ~~~s~~~~vl~~s~~pVLvv 177 (200)
|...+..++..+|++-=
T Consensus 142 ---s~~~~~A~~~Gl~~~~E 158 (252)
T 1xw8_A 142 ---SELIRAGKQYGLTTREE 158 (252)
T ss_dssp ---SHHHHHHHHTTCCEEEE
T ss_pred ---hHHHHHHHHcCCcEEEE
Confidence 78888889998888754
No 111
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=32.11 E-value=36 Score=19.32 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=19.5
Q ss_pred EEEEEecCCcHHHHHHHHHHHcCCCE
Q 045490 106 VEKVHTESGNKAAIILSQSTAHGVDL 131 (200)
Q Consensus 106 v~~~~~~g~~~~~~I~~~a~~~~~dl 131 (200)
+..+++...+..++|++++++.+.|-
T Consensus 12 vslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 12 VSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eEEEEeeCCchhHHHHHHHHHccchh
Confidence 44466666668999999999987764
No 112
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=30.91 E-value=2.3e+02 Score=23.47 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=70.3
Q ss_pred CeEEEEECCC-cc-hHHHHHHHHHhcC---CCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccc
Q 045490 9 RKVMVIADPT-RE-SAGALQYALSHVL---LEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPG 83 (200)
Q Consensus 9 ~~IlVavD~s-~~-s~~al~~A~~la~---~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (200)
.+.+|-+.+- -+ ...++++|..++. +.++.|.++.=.... .| .++..|-+..........-.
T Consensus 52 ~rllvIaGPCsie~~e~aleyA~~L~~~~~~l~d~l~ivmR~yfe-----------KP--RTs~g~kGl~~dP~ld~s~~ 118 (350)
T 1n8f_A 52 DRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFE-----------KP--RTTVGWKGLINDPHMDNSFQ 118 (350)
T ss_dssp CCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTTTTEEEEEECCCC-----------CC--CSSSSCCCTTTCTTSSSCCC
T ss_pred CceEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEeccc-----------cC--cCCcCcCCCCCCCCcccccc
Confidence 4566666532 22 4567777776654 355566665543222 12 11111222222222222233
Q ss_pred hHHHHHHHHHH---HHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCc
Q 045490 84 GEDFLEEMKQA---CEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGV 160 (200)
Q Consensus 84 ~~~~l~~~~~~---~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~ 160 (200)
.++-+.-+++. ..+. ++++-+.+.+-. -.+ ++.++ +|++-+|+|.....
T Consensus 119 i~~GL~ilr~ll~~~~e~----GlPv~TEvld~~-~~~----~vad~-vd~~qIGAR~~esq------------------ 170 (350)
T 1n8f_A 119 INDGLRIARKLLLDINDS----GLPAAGEFLDMI-TPQ----YLADL-MSWGAIGARTTESQ------------------ 170 (350)
T ss_dssp HHHHHHHHHHHHHHHHHT----TCCEEEECCCSS-THH----HHGGG-CSEEEECTTTTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHHh----CCceEEeecCcc-cHH----HHhhc-CcEEEECCccccCH------------------
Confidence 45555555555 4444 577776776655 233 33333 89999999872211
Q ss_pred ChHHHHHcCCCccEEEEecCCC
Q 045490 161 DTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 161 s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
.-.+.+...+|||.+=+..+-
T Consensus 171 -~hr~~asg~~~PVg~Kngt~g 191 (350)
T 1n8f_A 171 -VHRELASGLSCPVGFKNGTDG 191 (350)
T ss_dssp -HHHHHHHTCSSCEEEECCTTC
T ss_pred -HHHHHHhcCCCeEEEecCCCC
Confidence 223355578999998876665
No 113
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=29.38 E-value=94 Score=27.03 Aligned_cols=47 Identities=4% Similarity=-0.137 Sum_probs=31.2
Q ss_pred HHHHHHHH-HHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCC
Q 045490 117 AAIILSQS-TAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKG 181 (200)
Q Consensus 117 ~~~I~~~a-~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~ 181 (200)
...+.+.+ ++.++|.||+=.+. ++. ++..-.+++..++|||+...+.
T Consensus 60 ~~~~~~~~n~~~~vdgvi~~~~T------Fs~------------a~~~i~~l~~l~~PvL~~~~q~ 107 (500)
T 4f2d_A 60 ITAICRDANYDDRCAGLVVWLHT------FSP------------AKMWINGLTMLNKPLLQFHTQF 107 (500)
T ss_dssp HHHHHHHHHHCTTEEEEEEECCS------CCC------------THHHHHHHHHCCSCEEEEECCS
T ss_pred HHHHHHHhccccCCcEEEEeCCc------Ccc------------HHHHHHHHHhcCCCEEEEeCCC
Confidence 34444555 45589999998776 321 1344567888999999996543
No 114
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=29.37 E-value=58 Score=24.52 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=28.9
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
..++|++++-++-.+.++++..-.+. +.+.+|+++--
T Consensus 7 ~~k~IllgvTGs~aa~k~~~l~~~L~-~~g~~V~vv~T 43 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVGISSYLLYFK-SFFKEIRVVMT 43 (194)
T ss_dssp GGCEEEEEECSCGGGGGTHHHHHHHT-TTSSEEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHH-HCCCEEEEEEc
Confidence 45899999999999998888877774 45777776544
No 115
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=28.96 E-value=1e+02 Score=21.21 Aligned_cols=23 Identities=4% Similarity=0.166 Sum_probs=18.2
Q ss_pred EEecCCcHHHHHHHHHHHcCCCEE
Q 045490 109 VHTESGNKAAIILSQSTAHGVDLL 132 (200)
Q Consensus 109 ~~~~g~~~~~~I~~~a~~~~~dll 132 (200)
.+-.|. ..+++.+.++++++.+|
T Consensus 87 ~~~~G~-~~~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 87 IFNPGT-ENEELEEILSENGIEPV 109 (122)
T ss_dssp EECTTC-CCHHHHHHHHHTTCEEE
T ss_pred EECCCC-ChHHHHHHHHHcCCeEE
Confidence 355677 68899999999988755
No 116
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=28.89 E-value=46 Score=26.32 Aligned_cols=120 Identities=10% Similarity=-0.017 Sum_probs=71.7
Q ss_pred EEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccc----hHH
Q 045490 11 VMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPG----GED 86 (200)
Q Consensus 11 IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 86 (200)
.-|+-.+.-.....++.++.+|+..+-.|- -|.--|+ ...+ + -.......++ ..-
T Consensus 31 ANIACGfHAGDp~~M~~tv~lA~~~gV~IG-AHPgypD--------------l~GF---G---RR~m~~s~~el~~~v~Y 89 (250)
T 2dfa_A 31 ANLACGFHGGSPGRILEAVRLAKAHGVAVG-AHPGFPD--------------LVGF---G---RREMALSPEEVYADVLY 89 (250)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHHHTTCEEE-EECCCSC--------------TTTT---T---CSCCCCCHHHHHHHHHH
T ss_pred hhhhccccCCCHHHHHHHHHHHHHcCCeEe-cCCCCCc--------------ccCC---C---CCCCCCCHHHHHHHHHH
Confidence 335555555566678888888888876654 4553222 1111 0 1111111122 223
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEec---------CCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCC
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTE---------SGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGS 157 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~---------g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~ 157 (200)
.+-.+...|+..+.+ +.-+--. ....++.|++.++..+++|+++|..+
T Consensus 90 QiGAL~a~a~~~G~~----l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g------------------- 146 (250)
T 2dfa_A 90 QIGALSAFLKAEGLP----LHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPG------------------- 146 (250)
T ss_dssp HHHHHHHHHHHTTCC----CCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECTT-------------------
T ss_pred HHHHHHHHHHHcCCE----eEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC-------------------
Confidence 444566666666533 2211111 22478999999999999999999766
Q ss_pred CCcChHHHHHcCCCccEEEE
Q 045490 158 KGVDTAEYLIQNSKCNCVGV 177 (200)
Q Consensus 158 ~~~s~~~~vl~~s~~pVLvv 177 (200)
|...+..++..+|++-=
T Consensus 147 ---s~~~~~A~~~Gl~~~~E 163 (250)
T 2dfa_A 147 ---TVYEEEARKAGLRVVLE 163 (250)
T ss_dssp ---SHHHHHHHHTTCCEEEE
T ss_pred ---hHHHHHHHHcCCcEEEE
Confidence 78888999999888754
No 117
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=28.65 E-value=59 Score=24.72 Aligned_cols=39 Identities=8% Similarity=-0.035 Sum_probs=28.2
Q ss_pred CCCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 6 PQSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 6 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
...++|++++-++-.+.++++.+..+.+..+.+|+++--
T Consensus 17 l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~T 55 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTT 55 (206)
T ss_dssp CSSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEEC
T ss_pred cCCCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 346799999999999999888877775425667766543
No 118
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=28.63 E-value=1.1e+02 Score=23.68 Aligned_cols=34 Identities=12% Similarity=-0.079 Sum_probs=25.2
Q ss_pred ceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCC
Q 045490 103 RVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 103 ~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
++++.. +...- +.+.+++.++++++|+|.++...
T Consensus 151 G~~Vi~-LG~~v-p~e~l~~~~~~~~~d~V~lS~l~ 184 (258)
T 2i2x_B 151 GYNVVD-LGRDV-PAEEVLAAVQKEKPIMLTGTALM 184 (258)
T ss_dssp TCEEEE-EEEEC-CSHHHHHHHHHHCCSEEEEECCC
T ss_pred CCEEEE-CCCCC-CHHHHHHHHHHcCCCEEEEEeec
Confidence 355521 23334 89999999999999999998743
No 119
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=27.02 E-value=47 Score=26.34 Aligned_cols=120 Identities=6% Similarity=0.010 Sum_probs=72.1
Q ss_pred EEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccc----hHH
Q 045490 11 VMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPG----GED 86 (200)
Q Consensus 11 IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 86 (200)
.-|+-.+.-.....++.++.+|+..+-.|- -|.--|+ ...+ + -.......++ ..-
T Consensus 31 ANIACGfHAGDp~~M~~tv~lA~~~gV~IG-AHPgypD--------------l~GF---G---RR~m~~s~~el~~~v~Y 89 (255)
T 1v6t_A 31 ANVACGWHAGDPLVMRKTVRLAKENDVQVG-AHPGYPD--------------LMGF---G---RRYMKLTPEEARNYILY 89 (255)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHHHTTCEEE-EECCCSC--------------TTTT---T---CSCCCCCHHHHHHHHHH
T ss_pred hhhhccccCCCHHHHHHHHHHHHHcCCeEe-cCCCCCc--------------ccCC---C---CCCCCCCHHHHHHHHHH
Confidence 335555555566678888888888876654 4553222 1111 0 1111111122 223
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEec---------CCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCC
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTE---------SGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGS 157 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~---------g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~ 157 (200)
.+-.+...|+..+ .++.-+--. ....++.|++.++..+++|+++|..+
T Consensus 90 QiGAL~a~a~~~G----~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g------------------- 146 (255)
T 1v6t_A 90 QVGALYAFAKAEG----LELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSN------------------- 146 (255)
T ss_dssp HHHHHHHHHHHTT----CCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETT-------------------
T ss_pred HHHHHHHHHHHcC----CEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC-------------------
Confidence 4445666666654 444323222 22478999999999999999999776
Q ss_pred CCcChHHHHHcCCCccEEEE
Q 045490 158 KGVDTAEYLIQNSKCNCVGV 177 (200)
Q Consensus 158 ~~~s~~~~vl~~s~~pVLvv 177 (200)
|...+..++..+|++-=
T Consensus 147 ---s~~~~~A~~~Gl~~~~E 163 (255)
T 1v6t_A 147 ---SRVADIAEEMGLKVAHE 163 (255)
T ss_dssp ---CHHHHHHHHHTCCEEEE
T ss_pred ---hHHHHHHHHcCCcEEEE
Confidence 67788888888888754
No 120
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=26.28 E-value=59 Score=26.50 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=25.0
Q ss_pred eEEEEEC-----CCcchHHHHHHHHHhcCCCC-CeEEEEEe
Q 045490 10 KVMVIAD-----PTRESAGALQYALSHVLLEE-DELVLLHV 44 (200)
Q Consensus 10 ~IlVavD-----~s~~s~~al~~A~~la~~~~-a~l~llhV 44 (200)
.|+|..+ .++.+..++..|..++. .+ .+|+++-+
T Consensus 2 ~ilv~~e~~~g~l~~~~~eal~~A~~L~e-~g~~~V~av~~ 41 (320)
T 1o97_D 2 KILVIAEHRRNDLRPVSLELIGAANGLKK-SGEDKVVVAVI 41 (320)
T ss_dssp EEEEECCEETTEECTHHHHHHHHHHHHCS-STTCEEEEEEE
T ss_pred eEEEEEeCcCCCcCHHHHHHHHHHHHHhh-CCCCcEEEEEE
Confidence 3566665 24467899999999987 56 58888877
No 121
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=26.10 E-value=1.6e+02 Score=22.37 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=21.4
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
.++.+++|..+- +.++.++...+..+..+|+.
T Consensus 13 ~~lilAlD~~~~-----~~a~~~v~~~~~~v~~~Kvg 44 (228)
T 3m47_A 13 NRLILAMDLMNR-----DDALRVTGEVREYIDTVKIG 44 (228)
T ss_dssp GGEEEECCCCSH-----HHHHHHHHTTTTTCSEEEEE
T ss_pred CCeEEEeCCCCH-----HHHHHHHHHcCCcccEEEEc
Confidence 589999998763 34444445556667777873
No 122
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=26.08 E-value=2.5e+02 Score=22.32 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=26.2
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
..+||.|-+.++..+..+|-++... ...+++|.++-.
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Vis 125 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAVVS 125 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEEEE
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEEEe
Confidence 3568999998888888888776543 234567777655
No 123
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=25.89 E-value=2.2e+02 Score=21.65 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHH
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAE 164 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~ 164 (200)
.+.++.+.+.+++.+ ..+.............+++.....++|-||+..... . ...-
T Consensus 26 ~~~~~gi~~~a~~~g----~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~------~--------------~~~~ 81 (294)
T 3qk7_A 26 LEMISWIGIELGKRG----LDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP------E--------------DFRL 81 (294)
T ss_dssp HHHHHHHHHHHHHTT----CEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS------S--------------CHHH
T ss_pred HHHHHHHHHHHHHCC----CEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC------C--------------hHHH
Confidence 456666777766654 444333333222456778888888999999876430 1 2223
Q ss_pred HHHcCCCccEEEEecCCC
Q 045490 165 YLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 165 ~vl~~s~~pVLvv~~~~~ 182 (200)
..+.+.++||+++.....
T Consensus 82 ~~l~~~~iPvV~~~~~~~ 99 (294)
T 3qk7_A 82 QYLQKQNFPFLALGRSHL 99 (294)
T ss_dssp HHHHHTTCCEEEESCCCC
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 356677999999976533
No 124
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=25.87 E-value=2.5e+02 Score=22.36 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=26.9
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
..+||.|-+.++..+..+|-++...- ..+++|.++-.
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~Vis 130 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKMG-ELKMDIVGIVS 130 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHT-SSCCEEEEEEE
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHcC-CCCcEEEEEEe
Confidence 35689999998888888887776543 35677776555
No 125
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=25.70 E-value=1.8e+02 Score=22.04 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=20.8
Q ss_pred CCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 8 SRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 8 ~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
..++.|++|... -..+++.+-.+ +..+..++|
T Consensus 5 ~~~livAlD~~~-~~~a~~~~~~~----~~~~~~ikv 36 (221)
T 3exr_A 5 LPNLQVALDHSN-LKGAITAAVSV----GNEVDVIEA 36 (221)
T ss_dssp CCEEEEEECCSS-HHHHHHHHHHH----GGGCSEEEE
T ss_pred CCCEEEEeCCCC-HHHHHHHHHhh----CCCceEEEE
Confidence 357999999875 35566655544 345566777
No 126
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=24.30 E-value=2.8e+02 Score=22.28 Aligned_cols=85 Identities=11% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCCeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEeeCCCCCCCCcccccCCCCCCCCCCCCCCCCccccccccchHH
Q 045490 7 QSRKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVDTPNSWKNPFITFLRKPSNSQYTTPASLSSSSEGAAAPGGED 86 (200)
Q Consensus 7 ~~~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (200)
..+||.|-+.++..+..+|-++... ...+++|.++-... | .
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~I~~Visn~--------------~---------------------~--- 144 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHS-DELDCDIACVISNH--------------Q---------------------D--- 144 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHT-TCSCSEEEEEEESS--------------S---------------------T---
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHC-CCCCcEEEEEEECc--------------H---------------------H---
Confidence 3568999998888787887776543 23456777655510 0 0
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecC-Cc--HHHHHHHHHHHcCCCEEEEecCC
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTES-GN--KAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g-~~--~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+.+++++. ++++...-... +. ..+.+++..+++++|++|+..-+
T Consensus 145 ----~~~~A~~~----gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 145 ----LRSMVEWH----DIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp ----THHHHHTT----TCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred ----HHHHHHHc----CCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 11223333 46663321111 11 24678999999999999998744
No 127
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=24.24 E-value=1.6e+02 Score=25.55 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=27.2
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEee
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHVD 45 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV~ 45 (200)
++++|++.+.-+|..++..+... .+.+++.+|+.
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a---~G~~v~av~v~ 261 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRA---IGKNLTCVFVD 261 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEE
T ss_pred cceEEEecCCCCHHHHHHHHHHH---hCCCEEEEEEe
Confidence 68999999999998887766543 24689999994
No 128
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=24.19 E-value=76 Score=24.17 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=9.7
Q ss_pred HHHHHcCCCccEEEEe
Q 045490 163 AEYLIQNSKCNCVGVQ 178 (200)
Q Consensus 163 ~~~vl~~s~~pVLvv~ 178 (200)
...+++...+||++|-
T Consensus 132 ~adla~~l~~pviLV~ 147 (228)
T 3of5_A 132 QLDLIKALQIPVLLVS 147 (228)
T ss_dssp HHHHHHHHTCCEEEEE
T ss_pred HHHHHHHcCCCEEEEE
Confidence 3456666667766653
No 129
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=23.66 E-value=2.4e+02 Score=21.26 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 045490 117 AAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.+.+++..+++++|++|+..-+
T Consensus 68 ~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 68 DRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHHHHHHGGGCCSEEEESSCC
T ss_pred cHHHHHHHHhcCCCEEEEeChh
Confidence 3678899999999999998644
No 130
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=23.65 E-value=97 Score=24.20 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEec
Q 045490 86 DFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQ 136 (200)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~ 136 (200)
+.+.++++.+.+.+.. +.+ .+.|. +...=+..+.+.++|.+|+|+
T Consensus 180 ~KI~~lr~~~~~~~~~--~~I---~VDGG-I~~~ti~~~~~aGAD~~V~GS 224 (246)
T 3inp_A 180 DKAKEISKWISSTDRD--ILL---EIDGG-VNPYNIAEIAVCGVNAFVAGS 224 (246)
T ss_dssp HHHHHHHHHHHHHTSC--CEE---EEESS-CCTTTHHHHHTTTCCEEEESH
T ss_pred HHHHHHHHHHHhcCCC--eeE---EEECC-cCHHHHHHHHHcCCCEEEEeh
Confidence 4556666666554433 333 23444 333335566778999999997
No 131
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=23.43 E-value=1.5e+02 Score=18.91 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecCCC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~~~ 182 (200)
..+ .++.+++..+|+|++.-.-+- .-|. .....+-+..++|++++-....
T Consensus 35 ~~~-al~~~~~~~~dlii~D~~~p~---~~g~-------------~~~~~lr~~~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 35 GNE-AVEMVEELQPDLILLDIMLPN---KDGV-------------EVCREVRKKYDMPIIMLTAKDS 84 (120)
T ss_dssp HHH-HHHHHHTTCCSEEEEETTSTT---THHH-------------HHHHHHHTTCCSCEEEEEESSC
T ss_pred HHH-HHHHHhhCCCCEEEEeCCCCC---CCHH-------------HHHHHHHhcCCCCEEEEECCCC
Confidence 444 455667788999999875310 0121 3555565566899999865544
No 132
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=23.27 E-value=1.8e+02 Score=19.86 Aligned_cols=75 Identities=8% Similarity=0.101 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHH
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAE 164 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~ 164 (200)
....+.+...++..+ +..+ .....+ ..+ .++.+++..+|+|++...-.- ..|. ....
T Consensus 35 ~~~~~~l~~~L~~~~---~~~~--v~~~~~-~~~-al~~l~~~~~dlvilD~~l~~---~~g~-------------~l~~ 91 (164)
T 3t8y_A 35 AFMRMVLKDIIDSQP---DMKV--VGFAKD-GLE-AVEKAIELKPDVITMDIEMPN---LNGI-------------EALK 91 (164)
T ss_dssp HHHHHHHHHHHHTST---TEEE--EEEESS-HHH-HHHHHHHHCCSEEEECSSCSS---SCHH-------------HHHH
T ss_pred HHHHHHHHHHHhcCC---CeEE--EEecCC-HHH-HHHHhccCCCCEEEEeCCCCC---CCHH-------------HHHH
Confidence 345555556655432 2222 112233 444 445566678999999875310 0121 3555
Q ss_pred HHHcCCCccEEEEecCCC
Q 045490 165 YLIQNSKCNCVGVQRKGQ 182 (200)
Q Consensus 165 ~vl~~s~~pVLvv~~~~~ 182 (200)
.+-+..++|++++-....
T Consensus 92 ~lr~~~~~~ii~~s~~~~ 109 (164)
T 3t8y_A 92 LIMKKAPTRVIMVSSLTE 109 (164)
T ss_dssp HHHHHSCCEEEEEESSCC
T ss_pred HHHhcCCceEEEEecCCc
Confidence 666666789998865443
No 133
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.66 E-value=1.7e+02 Score=19.08 Aligned_cols=49 Identities=4% Similarity=-0.050 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcccccccccCCCccCCCCcChHHHHHc---CCCccEEEEecCCC
Q 045490 118 AIILSQSTAHGVDLLIIGQRRSLSNAILGYRRAGGSLRGSKGVDTAEYLIQ---NSKCNCVGVQRKGQ 182 (200)
Q Consensus 118 ~~I~~~a~~~~~dllVmG~~~~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~---~s~~pVLvv~~~~~ 182 (200)
+..++.+++..+|+|++...-.- ..|. ...+++-+ ...+||+++-....
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l~~---~~g~-------------~~~~~l~~~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMMVG---MDGF-------------SICHRIKSTPATANIIVIAMTGALT 95 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTCTT---SCHH-------------HHHHHHHTSTTTTTSEEEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEecccCC---CcHH-------------HHHHHHHhCccccCCcEEEEeCCCC
Confidence 34445556677899998865310 0110 24444544 24688888865443
No 134
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=22.54 E-value=3e+02 Score=21.97 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCcceEEEEEEecCCcHHHHHHHHHHHcCCCEEEE-ecCC
Q 045490 87 FLEEMKQACEVAKPKLRVHVEKVHTESGNKAAIILSQSTAHGVDLLII-GQRR 138 (200)
Q Consensus 87 ~l~~~~~~~~~~~~~~~v~v~~~~~~g~~~~~~I~~~a~~~~~dllVm-G~~~ 138 (200)
..+++.+.+++.+ ++++.....+..-...+.+.+...++|+||+ |.-|
T Consensus 45 ~~~~i~~~l~~~g----~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDG 93 (332)
T 2bon_A 45 PLREAIMLLREEG----MTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDG 93 (332)
T ss_dssp HHHHHHHHHHTTT----CCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred hHHHHHHHHHHcC----CcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccch
Confidence 3445555555443 4454444332223344444444456887765 4433
No 135
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=22.45 E-value=42 Score=24.51 Aligned_cols=31 Identities=6% Similarity=0.050 Sum_probs=19.6
Q ss_pred CeEEEEECCCcchHHHHHHHHHhcCCCCCeEEEEEe
Q 045490 9 RKVMVIADPTRESAGALQYALSHVLLEEDELVLLHV 44 (200)
Q Consensus 9 ~~IlVavD~s~~s~~al~~A~~la~~~~a~l~llhV 44 (200)
.+|||..+..+.+..++..| + .+.+++++-+
T Consensus 4 M~vlV~~E~~~~~~Ell~~a----r-~~g~v~av~~ 34 (166)
T 3fet_A 4 MKFLTVSDDMNFLRQVNTLV----A-GKGDMDSVII 34 (166)
T ss_dssp EEEEEEESSHHHHHHHHHHH----G-GGEEEEEEEE
T ss_pred cEEEEEEcCccHHHHHHHhh----c-cCCcEEEEEE
Confidence 46999998544455555443 3 2347888777
No 136
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=22.31 E-value=71 Score=26.41 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCC----CcccccccccCCCccCCCCcChHHHHHcCCCccEEEEec
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSL----SNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQR 179 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~----~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~ 179 (200)
+..+.++++++ +|+||+|-.+.+ ...+.. .+.+ .++++++|++.|-+
T Consensus 178 a~p~al~AI~~--AD~IvlgPGSlyTSI~P~Llv~--------------gi~~-Ai~~s~A~kV~V~N 228 (341)
T 2p0y_A 178 AVQPVIDAIMA--ADQIVLGPGSLFTSILPNLTIG--------------NIGR-AVCESDAEVVYICN 228 (341)
T ss_dssp CCHHHHHHHHH--CSEEEECSSCCCCCCHHHHSSH--------------HHHH-HHHHCSSEEEEECC
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHhcccccCc--------------cHHH-HHHhCCCCEEEEeC
Confidence 55667777755 899999986622 222332 3554 46778999999965
No 137
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=21.60 E-value=78 Score=26.09 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCc----ccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSLSN----AILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~~~----~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
+..+.++++++ +|+||+|-.+.+.+ .+.. .+.+ .+++++||++.|-+-
T Consensus 167 ~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~--------------gi~~-Ai~~s~A~kV~v~N~ 218 (332)
T 2ppv_A 167 PMNEAIEALEQ--ADLIVLGPGSLYTSVISNLCVK--------------GISE-ALLRTSAPKLYVSNV 218 (332)
T ss_dssp CCHHHHHHHHH--CSEEEECSSCCCCCCHHHHTSH--------------HHHH-HHHHCCSCEEEECCS
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHhcccccCc--------------hHHH-HHHhCCCCEEEEcCC
Confidence 56777777755 79999998662222 2222 3444 467889999999654
No 138
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=20.76 E-value=2.3e+02 Score=19.94 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEEEecCC-cHHHHHHHHHHHcCCCEEEEecCC
Q 045490 85 EDFLEEMKQACEVAKPKLRVHVEKVHTESG-NKAAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~v~v~~~~~~g~-~~~~~I~~~a~~~~~dllVmG~~~ 138 (200)
+++.+.+.+.+.+. +++++..-+... ++.+ +...+ .++|.||+|+..
T Consensus 19 ~~iA~~ia~~l~~~----g~~v~~~~~~~~~~~~~-~~~~~--~~~d~ii~Gspt 66 (159)
T 3fni_A 19 DRLAQAIINGITKT----GVGVDVVDLGAAVDLQE-LRELV--GRCTGLVIGMSP 66 (159)
T ss_dssp HHHHHHHHHHHHHT----TCEEEEEESSSCCCHHH-HHHHH--HTEEEEEEECCB
T ss_pred HHHHHHHHHHHHHC----CCeEEEEECcCcCCHHH-HHHHH--HhCCEEEEEcCc
Confidence 35555555555543 356655544443 3444 33333 457999999854
No 139
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=20.53 E-value=82 Score=25.82 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCc----ccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 116 KAAIILSQSTAHGVDLLIIGQRRSLSN----AILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 116 ~~~~I~~~a~~~~~dllVmG~~~~~~~----~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
+..+.++++++ +|+||+|-.+.+.+ .+.. .+.+. ++++++|++.|-+-
T Consensus 168 ~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~--------------gi~~A-i~~s~A~kV~v~Nl 219 (323)
T 2o2z_A 168 PLREGLEAIRK--ADVIVIGPGSLYTSVLPNLLVP--------------GICEA-IKQSTARKVYICNV 219 (323)
T ss_dssp CCHHHHHHHHH--CSEEEECSSCTTTTHHHHHTST--------------THHHH-HHHCCSEEEEECCS
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHhcccccCc--------------hHHHH-HHhCCCCEEEEcCC
Confidence 56777888755 79999998663322 2222 35554 67789999999554
No 140
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=20.47 E-value=88 Score=24.29 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCEEEEec-CC-CCCcccccccccCCCccCCCCcChHHHHHcCCCccEEEEecC
Q 045490 118 AIILSQSTAHGVDLLIIGQ-RR-SLSNAILGYRRAGGSLRGSKGVDTAEYLIQNSKCNCVGVQRK 180 (200)
Q Consensus 118 ~~I~~~a~~~~~dllVmG~-~~-~~~~~~~G~~~~~~~~~~~~~~s~~~~vl~~s~~pVLvv~~~ 180 (200)
..+++...+.++|+|.+|- .+ ...+ ++ .+.+.+-+ .++|++++..-
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~-~~---------------~~v~~ir~-~~~Pivl~~y~ 70 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEK-AR---------------TLIEKVSQ-YGLPIVVEPSD 70 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHH-HH---------------HHHHHHTT-SCCCEEECCSS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHH-HH---------------HHHHHhcC-CCCCEEEecCC
Confidence 4456777788999999995 33 2222 22 24444433 78999998766
No 141
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=20.01 E-value=2.8e+02 Score=20.80 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 045490 117 AAIILSQSTAHGVDLLIIGQRR 138 (200)
Q Consensus 117 ~~~I~~~a~~~~~dllVmG~~~ 138 (200)
.+.+++..+++++|++|+..-+
T Consensus 69 ~~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 69 EERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHHHHTTCCEEEESSCC
T ss_pred hHHHHHHHHhcCCCEEEEeCch
Confidence 3678889999999999997643
Done!