Query 045491
Match_columns 241
No_of_seqs 106 out of 326
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_B RP10A, 40S ribosomal pr 100.0 1.2E-98 4E-103 672.2 15.5 229 1-232 21-250 (255)
2 2xzm_4 40S ribosomal protein S 100.0 3.9E-95 1.3E-99 650.8 24.4 216 1-216 23-242 (265)
3 3j20_A 30S ribosomal protein S 100.0 1.1E-82 3.7E-87 552.2 21.6 188 1-204 10-197 (198)
4 3bk6_A PH stomatin; archaea, t 86.9 6.9 0.00024 31.8 10.8 88 104-197 20-109 (188)
5 2rpb_A Hypothetical membrane p 81.0 5.9 0.0002 29.3 7.2 89 105-197 17-105 (113)
6 4fvg_A Stomatin; mixed alpha-b 73.7 29 0.00098 26.8 10.4 88 104-197 25-114 (133)
7 1win_A Flotillin 2; BAND 7 dom 65.7 46 0.0016 25.9 9.8 89 104-197 21-119 (143)
8 3mhs_B Protein SUS1; multi-pro 20.0 1.3E+02 0.0044 22.5 4.3 39 143-182 41-86 (96)
9 1ygt_A Cytoplasmic dynein ligh 18.6 1.7E+02 0.0057 21.8 4.8 59 141-200 12-70 (111)
10 2ftc_K 39S ribosomal protein L 16.1 42 0.0014 25.6 0.8 34 181-214 53-86 (98)
No 1
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=100.00 E-value=1.2e-98 Score=672.21 Aligned_cols=229 Identities=57% Similarity=0.921 Sum_probs=212.3
Q ss_pred CCCCCCcceEEEeCCCCCCcceeeeeeeecccccccCccCCCCcEEEEeccccCCchhhceeEEEEEEeeecCCeeeEee
Q 045491 1 ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNF 80 (241)
Q Consensus 1 ~D~~~~KeWY~V~AP~~F~~~~iG~T~v~kt~g~~~a~~~l~GRv~EvsL~DL~~d~~~~~~K~kfki~~V~G~~a~T~F 80 (241)
+|||++|+||+|+||++|+.++||+|||++|||++||||+|+|||||+|||||+||++++|+||+|+|++|+|++|+|+|
T Consensus 21 ~D~f~~K~WY~VkAP~~F~~r~iGkT~v~~t~gtkia~d~L~GRv~EvsLaDL~~D~~~~~rK~kl~i~~V~G~~~lT~F 100 (255)
T 3u5c_B 21 VDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNF 100 (255)
T ss_dssp CCTTTTCCEEEEECCSSSSCSEEEEEECCCCCSSSCHHHHSCCCEEEEESHHHHSCSTTSSCEEEEECCCEETTEECCEE
T ss_pred cCCcccceeEEEeCccccCCcceeEEEcccccCcccCchhccCcEEEEEhhhccCChhhhceEEEEEEEeecCCEEEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCcccchhhhhhhHHHHHHHHHHHHHHHhhCC
Q 045491 81 WGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCD 160 (241)
Q Consensus 81 ~GmelTrDklrSlVrk~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~sSq~~~IRk~m~eii~~~~~~~~ 160 (241)
||||||+||||||||||||+|||++||+|+|||+|||||||||++|+||.+|||||++||+++||++|+++|++++++++
T Consensus 101 ~GmdlT~DklrSlVrKw~s~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~d 180 (255)
T 3u5c_B 101 HGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGST 180 (255)
T ss_dssp EEECCCHHHHHHHCCTTSCEEECCEEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSH
T ss_pred cceeechhhhhhhccccceEEEEEEEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhcccccccccEEEEEEEeecCCccchhhhhhhhcCc-ccCCcceecCCCCCCCC
Q 045491 161 LKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMP 232 (241)
Q Consensus 161 l~e~v~~li~~~i~~eI~k~~k~IyPlr~v~IrKvKvlk~p~~~~~kl~e~~~~~-~~~~g~~~~~~~~~~~~ 232 (241)
|+|||++|++|+|+++|+++|++|||||+|+|||||||+.|+||+++|||+||++ ++++|.+|+ +||||
T Consensus 181 l~e~V~kli~~~i~~eI~k~~k~IyPL~~V~IrKvKvLk~Pk~d~~kl~e~hg~~~~~~~g~~v~---~~~~~ 250 (255)
T 3u5c_B 181 LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVT---GFKDE 250 (255)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHTTCCCEEEECCCEEEEECCCCCHHHHGGGCC--------------------
T ss_pred HHHHHHHHcCchHHHHHHHHhccccccceEEEEEEEEeecCcccHhHHHhhhcCCCCCcCccccc---ccCCc
Confidence 9999999999999999999999999999999999999999999999999999998 577899998 78775
No 2
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=100.00 E-value=3.9e-95 Score=650.84 Aligned_cols=216 Identities=44% Similarity=0.786 Sum_probs=202.1
Q ss_pred CCCCCCcceEEEeCCCCCCcceeeeeeeecccccccCccCCCCcEEEEeccccCCch-hhceeEEEEEEeeecCCeeeEe
Q 045491 1 ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE-EHAYRKIRLRAEDVQGKNVLTN 79 (241)
Q Consensus 1 ~D~~~~KeWY~V~AP~~F~~~~iG~T~v~kt~g~~~a~~~l~GRv~EvsL~DL~~d~-~~~~~K~kfki~~V~G~~a~T~ 79 (241)
+|||++|+||+|+||++|+.++||+||||||||++++||.|+|||||+||+||+||+ +++|+||+|+|++|+|++|+|+
T Consensus 23 ~Dpf~~K~WY~VkAP~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~~~~~rK~kf~i~~V~G~nalT~ 102 (265)
T 2xzm_4 23 IDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTS 102 (265)
T ss_dssp SCTTSSEEEEEEECCTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTTTSCCCEEEEEEEEECSSCEEEE
T ss_pred cCCCcccceEEEECCcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChhhhcceEEEEEEEeecCCEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccC---CcCcccchhhhhhhHHHHHHHHHHHHHHH
Q 045491 80 FWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLP---NQVKRTCYAQTSQIRQIRRKMREIMVAQA 156 (241)
Q Consensus 80 F~GmelTrDklrSlVrk~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~---~q~kkt~Ya~sSq~~~IRk~m~eii~~~~ 156 (241)
|||||||+||||||||||||+||+++||+|+|||+|||||||||++|+ ||.+|||||++||+++||++|+++|++++
T Consensus 103 F~GmdlTrDklrSlVrKw~s~Iea~vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~ 182 (265)
T 2xzm_4 103 FYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEA 182 (265)
T ss_dssp EEEEECCHHHHHHSCCTTBCEEEEEEEEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeeccHHHhhhhhcccceeEEEEEEEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hhCCHHHHHHHHhhhhHHHHHHHhcccccccccEEEEEEEeecCCccchhhhhhhhcCcc
Q 045491 157 ASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS 216 (241)
Q Consensus 157 ~~~~l~e~v~~li~~~i~~eI~k~~k~IyPlr~v~IrKvKvlk~p~~~~~kl~e~~~~~~ 216 (241)
++++|+|||++|++|+|++||+++|++|||||+|+|||||||+.|+||+++|||+||+++
T Consensus 183 ~~~dl~e~V~kli~~~i~keI~k~~k~IyPL~~V~IrKvKvLk~Pk~~~~~l~e~hg~~~ 242 (265)
T 2xzm_4 183 AKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELYSHEK 242 (265)
T ss_dssp HTCCHHHHHHHHHTTHHHHHHHHHHTTTCCEEEEEEEEEEEEECCCC-------------
T ss_pred hhCCHHHHHHHHccchHHHHHHHHhhhccccceEEEEEEEEEecCchHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999854
No 3
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-82 Score=552.20 Aligned_cols=188 Identities=35% Similarity=0.531 Sum_probs=185.4
Q ss_pred CCCCCCcceEEEeCCCCCCcceeeeeeeecccccccCccCCCCcEEEEeccccCCchhhceeEEEEEEeeecCCeeeEee
Q 045491 1 ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNF 80 (241)
Q Consensus 1 ~D~~~~KeWY~V~AP~~F~~~~iG~T~v~kt~g~~~a~~~l~GRv~EvsL~DL~~d~~~~~~K~kfki~~V~G~~a~T~F 80 (241)
+|||++|+||+|+||++|+.+++|+||||+ ||+|+|||||+|||||+||++++|+||+|+|++|+|++|+|+|
T Consensus 10 ~D~~~~K~WY~V~AP~~F~~~~iG~T~~~~-------~~~l~GRv~EvsL~DL~~d~~~~~~K~kf~i~~V~G~~a~T~F 82 (198)
T 3j20_A 10 RDKWKLKQWYIIYAPDFFGGVEVGLTPADD-------PEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKF 82 (198)
T ss_dssp CCCSSSEEEEEEECCSSSSCCCCCEEEEES-------SSCCSSCEEEECCCSSTTHHHHHCCCEEEEEEEESSSEEEEEE
T ss_pred cCCCccceeEEEECchhcCCceeEEEEccC-------cccccCeEEEEEHHHhcCChhhheEEEEEEEEeccCCEEEEEE
Confidence 699999999999999999999999999996 8999999999999999999999999999999999999999999
Q ss_pred ecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCcccchhhhhhhHHHHHHHHHHHHHHHhhCC
Q 045491 81 WGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCD 160 (241)
Q Consensus 81 ~GmelTrDklrSlVrk~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~sSq~~~IRk~m~eii~~~~~~~~ 160 (241)
||||||+||||||||||||+||+++||+|+|||+|||||+|||+++ |++||+++||++|.++|++++++++
T Consensus 83 ~G~~lT~DklrSlVrk~~s~Iea~vdVkT~DGy~lRvf~i~fT~kr---------a~~sQ~~~IRk~m~eii~~~~~~~~ 153 (198)
T 3j20_A 83 KGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKKAEELN 153 (198)
T ss_dssp EEECCCHHHHHHHCCSSSCEEEEEEEEECTTSCEEEEEEEEEECSS---------CCCTHHHHHHHHHHHHHHHHHHHSC
T ss_pred cceeechhhhhhheecceeEEEEEEEEEecCCCEEEEEEEEEEecc---------ccchhhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhcccccccccEEEEEEEeecCCccc
Q 045491 161 LKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 204 (241)
Q Consensus 161 l~e~v~~li~~~i~~eI~k~~k~IyPlr~v~IrKvKvlk~p~~~ 204 (241)
|+|||++|++|+|++||+++|++|||||+|+|||||||+.|+|-
T Consensus 154 l~e~V~~li~~~i~~eI~k~~k~IyPl~~V~IrKvKvlk~Pk~~ 197 (198)
T 3j20_A 154 FKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQVI 197 (198)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHSCEEEEEEEEEEEEECSCSC
T ss_pred HHHHHHHHcCChHHHHHHHhhCcccccceEEEEEEEEeeccCcc
Confidence 99999999999999999999999999999999999999999974
No 4
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=86.94 E-value=6.9 Score=31.82 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=56.9
Q ss_pred EEEEEeCCCcEEEEEEEEEeeccCCcCcccchhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHH--HhhhhHHHHHHHhc
Q 045491 104 YVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEK--FIAEVIGREIEKAT 181 (241)
Q Consensus 104 ~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~sSq~~~IRk~m~eii~~~~~~~~l~e~v~~--li~~~i~~eI~k~~ 181 (241)
..++.|+||..|+|-+.+.-+=. + ..+-.|.-..-..+++......+...++.+++++++.. -+...+...+...+
T Consensus 20 ~~~v~TkD~~~V~v~~~v~yrI~-d-p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~R~~i~~~i~~~l~~~~ 97 (188)
T 3bk6_A 20 VQETITKDNVPVRVNAVVYFRVV-D-PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEAT 97 (188)
T ss_dssp EEEEECTTSCEEEEEEEEEEEES-C-HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred CceeEcCCCCEEEEEEEEEEEEC-C-HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45899999999999888654442 1 22222322234467888889999999999999999853 34445555555554
Q ss_pred ccccccccEEEEEEEe
Q 045491 182 SSIYPLQNVFIRKVKI 197 (241)
Q Consensus 182 k~IyPlr~v~IrKvKv 197 (241)
.. .-+.|..+.+
T Consensus 98 ~~----~GI~v~~v~I 109 (188)
T 3bk6_A 98 DP----WGIKVTAVEI 109 (188)
T ss_dssp GG----GTEEEEEEEE
T ss_pred Hh----cCeEEEEEEE
Confidence 43 3455555554
No 5
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=81.01 E-value=5.9 Score=29.35 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=54.5
Q ss_pred EEEEeCCCcEEEEEEEEEeeccCCcCcccchhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhcccc
Q 045491 105 VDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSI 184 (241)
Q Consensus 105 vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~sSq~~~IRk~m~eii~~~~~~~~l~e~v~~li~~~i~~eI~k~~k~I 184 (241)
..+.|+||..|++.+.+.-+=. + ..+-.|.-..-..+|+..+...+.+.+.+.++++++. --+.|+.+|....+..
T Consensus 17 ~~v~T~D~~~v~v~~~v~~rI~-d-p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~--~R~~i~~~i~~~l~~~ 92 (113)
T 2rpb_A 17 QEVICKDNVVVTVDAVVYYQVI-D-PVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLS--GRDIINARLREELDKI 92 (113)
T ss_dssp EEEECTTSCEEEECEEEEEEES-C-TTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHH--CHHHHHHHHHHHHHHH
T ss_pred ceeEeCCCCEEEEEEEEEEEEC-C-HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHh--CHHHHHHHHHHHHHHH
Confidence 5889999999999887544432 2 1222222223445799999999999999999999975 2234444444443332
Q ss_pred cccccEEEEEEEe
Q 045491 185 YPLQNVFIRKVKI 197 (241)
Q Consensus 185 yPlr~v~IrKvKv 197 (241)
.--.-++|..+.+
T Consensus 93 ~~~~Gi~v~~v~I 105 (113)
T 2rpb_A 93 TDRWGVKITRVEI 105 (113)
T ss_dssp HGGGTEECCCEEE
T ss_pred HHhcCeEEEEEEE
Confidence 2222344444443
No 6
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=73.71 E-value=29 Score=26.75 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=60.7
Q ss_pred EEEEEeCCCcEEEEEEEEEeeccCCcCcccchhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHH--HHhhhhHHHHHHHhc
Q 045491 104 YVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVE--KFIAEVIGREIEKAT 181 (241)
Q Consensus 104 ~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~sSq~~~IRk~m~eii~~~~~~~~l~e~v~--~li~~~i~~eI~k~~ 181 (241)
...+.|+|+..|.|-.+++-+=. .-.+-.|.=..-..+++......|.+.+.+.++++++. .-+...+...+.+.+
T Consensus 25 ~q~vlT~D~~~v~Vd~~v~yrI~--Dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~ldeil~~r~~i~~~i~~~l~~~~ 102 (133)
T 4fvg_A 25 PQEVLTKDSVTISVDGVVYYRVQ--NATLAVANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDAT 102 (133)
T ss_dssp EEEEECTTCCEEEEEEEEEEEES--CHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCEEEEEEEEEEEEe--ehHHhHhhhhhHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45799999999998887665542 22334444455667889999999999999999999984 234555555555554
Q ss_pred ccccccccEEEEEEEe
Q 045491 182 SSIYPLQNVFIRKVKI 197 (241)
Q Consensus 182 k~IyPlr~v~IrKvKv 197 (241)
... -++|..|.+
T Consensus 103 ~~~----GI~V~~V~i 114 (133)
T 4fvg_A 103 DDW----GIKVERVEI 114 (133)
T ss_dssp GGG----TEEEEEEEE
T ss_pred hcC----CEEEEEEEE
Confidence 432 566666665
No 7
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=65.68 E-value=46 Score=25.90 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=54.3
Q ss_pred EEEEEeCCCcEEEEEEEEEeeccCCcCcccchhh-------hhhh-HHHHHHHHHHHHHHHhhCCHHHHHHH--HhhhhH
Q 045491 104 YVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQ-------TSQI-RQIRRKMREIMVAQAASCDLKSLVEK--FIAEVI 173 (241)
Q Consensus 104 ~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~-------sSq~-~~IRk~m~eii~~~~~~~~l~e~v~~--li~~~i 173 (241)
...+.|+|+-.|.|-++++-+=..+ ..+-.|+- ..++ ..+...+...+...+.+++++|++.. -+...+
T Consensus 21 ~q~viTkD~v~v~Vdavv~~rI~dd-~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~~tldeils~R~~i~~~v 99 (143)
T 1win_A 21 CEDVETAEGVALTVTGVAQVKIMTE-KELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLV 99 (143)
T ss_dssp EEEEECSSSCEEEECCEEEEEECCC-SSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHTHHHHHHHH
T ss_pred cceeEcCCCCEEEEEEEEEEEECCC-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4478999999998888766655311 22222221 1222 33566778899999999999999863 344444
Q ss_pred HHHHHHhcccccccccEEEEEEEe
Q 045491 174 GREIEKATSSIYPLQNVFIRKVKI 197 (241)
Q Consensus 174 ~~eI~k~~k~IyPlr~v~IrKvKv 197 (241)
...+...+.. .-++|.-+.+
T Consensus 100 ~~~~~~~~~~----~Gi~V~~v~I 119 (143)
T 1win_A 100 REVAAPDVGR----MGIEILSFTI 119 (143)
T ss_dssp HHHHHHHHTT----TTEEEEEEEC
T ss_pred HHHHHHHHHh----CCCEEEEEEE
Confidence 4444444433 3355555554
No 8
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=19.95 E-value=1.3e+02 Score=22.48 Aligned_cols=39 Identities=8% Similarity=0.214 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHH-------hhhhHHHHHHHhcc
Q 045491 143 QIRRKMREIMVAQAASCDLKSLVEKF-------IAEVIGREIEKATS 182 (241)
Q Consensus 143 ~IRk~m~eii~~~~~~~~l~e~v~~l-------i~~~i~~eI~k~~k 182 (241)
.||....++|.+. .+.++++++..+ +|+++-+|+....+
T Consensus 41 evr~~~r~~i~~~-~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir 86 (96)
T 3mhs_B 41 KVKDLTKSEMNIN-ESTNFTQILSTVEPKALEMVSDSTRETVLKQIR 86 (96)
T ss_dssp HHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHH
Confidence 4566666777666 788888888765 56777776665543
No 9
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=18.58 E-value=1.7e+02 Score=21.85 Aligned_cols=59 Identities=5% Similarity=0.046 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhcccccccccEEEEEEEeecC
Q 045491 141 IRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKA 200 (241)
Q Consensus 141 ~~~IRk~m~eii~~~~~~~~l~e~v~~li~~~i~~eI~k~~k~IyPlr~v~IrKvKvlk~ 200 (241)
...++.+|.++|.+...+..++.---.-....|..+|.++.+..-|-.+ +|--+-+...
T Consensus 12 ~~~v~~ii~~~l~~~L~~~~Y~~~~~~~~~~~i~~~i~~~lk~l~~~YK-~iV~v~I~q~ 70 (111)
T 1ygt_A 12 VDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYK-YIVTAMIMQK 70 (111)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCSEE-EEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCCce-EEEEEEEEEc
Confidence 3478999999999999999887654444556677777777777655233 4444444444
No 10
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=16.12 E-value=42 Score=25.55 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=28.8
Q ss_pred cccccccccEEEEEEEeecCCccchhhhhhhhcC
Q 045491 181 TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 214 (241)
Q Consensus 181 ~k~IyPlr~v~IrKvKvlk~p~~~~~kl~e~~~~ 214 (241)
...+|||+.=.|.|++|++.++.--+||.-+-.-
T Consensus 53 VEr~fpl~SP~I~~IeV~r~gkvRRaKLyYLR~~ 86 (98)
T 2ftc_K 53 VEICFELYNPRVQEIQVVKLEKRLDDSLLYLRDA 86 (98)
T ss_pred EEEEEecCCCceeEEEEEEcCcccceeEEEeccC
Confidence 4578999999999999999999887888776653
Done!