Query 045494
Match_columns 492
No_of_seqs 162 out of 715
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 6.6E-97 1E-101 769.0 34.3 328 157-487 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 96.8 0.015 3.4E-07 57.5 11.9 185 235-441 33-228 (247)
3 TIGR00740 methyltransferase, p 95.1 0.25 5.4E-06 48.4 11.5 106 260-381 53-159 (239)
4 TIGR02716 C20_methyl_CrtF C-20 95.1 0.55 1.2E-05 47.8 14.2 162 249-440 138-303 (306)
5 PRK14103 trans-aconitate 2-met 93.8 1.5 3.3E-05 43.3 13.8 106 250-382 19-125 (255)
6 PLN02233 ubiquinone biosynthes 93.3 4.9 0.00011 40.3 16.6 117 250-383 63-183 (261)
7 PRK06202 hypothetical protein; 92.8 1.1 2.4E-05 43.5 10.9 109 257-381 57-165 (232)
8 TIGR02752 MenG_heptapren 2-hep 92.7 3.1 6.7E-05 40.1 13.7 113 250-381 35-149 (231)
9 PLN02336 phosphoethanolamine N 92.1 5.3 0.00012 43.2 16.1 154 249-442 255-413 (475)
10 PTZ00098 phosphoethanolamine N 92.1 3.8 8.2E-05 41.1 13.9 158 246-441 38-200 (263)
11 PF13847 Methyltransf_31: Meth 91.0 0.97 2.1E-05 40.9 7.7 106 259-382 2-109 (152)
12 PLN02396 hexaprenyldihydroxybe 90.6 4.7 0.0001 42.1 13.2 151 262-442 133-288 (322)
13 PRK01683 trans-aconitate 2-met 89.0 8.7 0.00019 37.8 13.2 112 248-383 19-130 (258)
14 TIGR00477 tehB tellurite resis 88.7 3.6 7.7E-05 39.3 9.9 112 247-379 17-129 (195)
15 TIGR02021 BchM-ChlM magnesium 88.7 7.6 0.00016 37.4 12.2 161 244-442 37-205 (219)
16 PRK11207 tellurite resistance 88.6 5 0.00011 38.3 10.8 113 248-381 18-132 (197)
17 PF13489 Methyltransf_23: Meth 88.4 3.2 7E-05 36.9 8.9 134 258-439 20-159 (161)
18 PRK00216 ubiE ubiquinone/menaq 88.2 19 0.0004 34.3 14.6 112 253-381 44-156 (239)
19 TIGR01934 MenG_MenH_UbiE ubiqu 88.0 16 0.00036 34.3 13.9 117 248-384 27-145 (223)
20 PRK08317 hypothetical protein; 86.7 28 0.0006 32.9 14.7 113 252-382 11-123 (241)
21 PF09243 Rsm22: Mitochondrial 86.3 2.4 5.1E-05 43.1 7.5 126 244-387 13-144 (274)
22 PF00891 Methyltransf_2: O-met 86.2 8.8 0.00019 37.5 11.2 147 250-430 90-240 (241)
23 PRK12335 tellurite resistance 84.9 7 0.00015 39.6 10.1 97 263-380 123-220 (287)
24 PRK11873 arsM arsenite S-adeno 84.7 16 0.00034 36.4 12.4 147 262-442 79-229 (272)
25 PF12847 Methyltransf_18: Meth 84.4 2.8 6E-05 35.3 6.0 104 263-382 4-110 (112)
26 PLN02585 magnesium protoporphy 84.0 24 0.00052 36.8 13.7 147 260-440 144-296 (315)
27 PRK11036 putative S-adenosyl-L 84.0 8.4 0.00018 38.1 10.1 112 251-381 36-147 (255)
28 TIGR03587 Pse_Me-ase pseudamin 83.8 7.9 0.00017 37.5 9.5 98 263-385 46-145 (204)
29 PLN02244 tocopherol O-methyltr 83.7 37 0.00079 35.5 15.0 99 260-381 118-221 (340)
30 PRK05134 bifunctional 3-demeth 83.1 38 0.00082 32.7 14.0 156 258-442 46-204 (233)
31 smart00138 MeTrc Methyltransfe 82.3 5.3 0.00012 40.2 8.0 53 258-310 97-151 (264)
32 TIGR02081 metW methionine bios 79.5 20 0.00043 33.9 10.4 46 251-306 6-51 (194)
33 TIGR02072 BioC biotin biosynth 78.9 10 0.00022 36.0 8.3 112 248-382 19-134 (240)
34 PF08241 Methyltransf_11: Meth 78.5 2 4.4E-05 34.4 2.9 91 265-380 1-94 (95)
35 PRK05785 hypothetical protein; 77.4 11 0.00024 37.0 8.2 91 261-382 52-145 (226)
36 PLN02336 phosphoethanolamine N 77.1 30 0.00064 37.5 12.2 112 250-382 27-141 (475)
37 TIGR03438 probable methyltrans 76.5 21 0.00046 36.5 10.3 119 252-385 57-179 (301)
38 smart00650 rADc Ribosomal RNA 74.5 28 0.00062 32.1 9.8 110 250-384 3-114 (169)
39 PLN02490 MPBQ/MSBQ methyltrans 74.3 39 0.00085 35.7 11.8 142 260-442 113-255 (340)
40 PF01209 Ubie_methyltran: ubiE 72.4 11 0.00025 37.3 6.9 114 251-383 38-154 (233)
41 PF02353 CMAS: Mycolic acid cy 72.0 19 0.00042 36.7 8.6 113 250-382 52-165 (273)
42 PF13679 Methyltransf_32: Meth 71.8 9.6 0.00021 34.5 5.8 49 256-307 21-69 (141)
43 TIGR00452 methyltransferase, p 71.7 36 0.00078 35.5 10.7 113 251-382 112-224 (314)
44 PF13649 Methyltransf_25: Meth 70.9 6 0.00013 33.1 4.0 61 264-334 1-61 (101)
45 PRK07580 Mg-protoporphyrin IX 69.1 67 0.0015 30.6 11.3 44 260-312 63-106 (230)
46 smart00828 PKS_MT Methyltransf 69.0 29 0.00063 33.2 8.8 100 263-381 2-102 (224)
47 PF08242 Methyltransf_12: Meth 69.0 1.3 2.7E-05 36.9 -0.6 43 265-314 1-43 (99)
48 PRK10258 biotin biosynthesis p 67.9 43 0.00093 32.8 9.9 106 248-381 30-138 (251)
49 PRK09489 rsmC 16S ribosomal RN 66.4 43 0.00093 35.3 10.0 115 250-382 186-302 (342)
50 PRK00107 gidB 16S rRNA methylt 66.4 92 0.002 29.9 11.6 98 261-383 46-145 (187)
51 PRK11705 cyclopropane fatty ac 65.8 44 0.00096 35.7 10.1 109 250-382 157-266 (383)
52 cd02440 AdoMet_MTases S-adenos 65.1 47 0.001 25.7 7.9 102 263-382 1-103 (107)
53 PRK06922 hypothetical protein; 64.6 25 0.00054 40.5 8.3 104 262-381 420-535 (677)
54 PRK00274 ksgA 16S ribosomal RN 64.2 30 0.00065 34.9 8.1 67 236-311 13-84 (272)
55 TIGR02085 meth_trns_rumB 23S r 63.6 74 0.0016 33.7 11.3 98 263-383 236-334 (374)
56 TIGR00138 gidB 16S rRNA methyl 63.4 70 0.0015 30.3 10.1 98 261-383 43-142 (181)
57 COG2230 Cfa Cyclopropane fatty 62.9 71 0.0015 33.1 10.5 111 250-380 62-173 (283)
58 TIGR01983 UbiG ubiquinone bios 62.8 1.4E+02 0.0031 28.3 13.5 154 260-441 45-201 (224)
59 TIGR03439 methyl_EasF probable 61.8 62 0.0014 33.9 10.1 125 251-386 69-200 (319)
60 TIGR00537 hemK_rel_arch HemK-r 61.0 1.4E+02 0.003 27.6 11.6 41 263-312 22-62 (179)
61 COG4106 Tam Trans-aconitate me 60.6 26 0.00055 35.4 6.6 108 256-387 26-133 (257)
62 PRK15068 tRNA mo(5)U34 methylt 59.5 1.1E+02 0.0024 31.8 11.5 112 252-382 114-225 (322)
63 PRK13944 protein-L-isoaspartat 57.5 1E+02 0.0022 29.5 10.2 56 251-312 63-118 (205)
64 PRK15001 SAM-dependent 23S rib 57.5 57 0.0012 35.0 9.1 107 263-383 231-340 (378)
65 PRK10909 rsmD 16S rRNA m(2)G96 55.2 1.8E+02 0.004 28.2 11.6 106 262-387 55-163 (199)
66 PRK03522 rumB 23S rRNA methylu 53.8 1.4E+02 0.003 30.7 11.1 99 261-382 174-273 (315)
67 TIGR02469 CbiT precorrin-6Y C5 51.3 40 0.00086 28.4 5.7 44 263-313 22-65 (124)
68 TIGR00406 prmA ribosomal prote 51.1 1.6E+02 0.0035 29.9 10.9 121 237-381 132-257 (288)
69 COG2242 CobL Precorrin-6B meth 50.6 26 0.00055 34.2 4.7 52 254-315 28-82 (187)
70 TIGR00755 ksgA dimethyladenosi 49.9 1E+02 0.0023 30.5 9.1 52 250-310 19-70 (253)
71 PF07521 RMMBL: RNA-metabolisi 49.7 32 0.0007 25.2 4.1 37 345-381 1-38 (43)
72 COG2226 UbiE Methylase involve 48.8 1.2E+02 0.0025 30.7 9.2 124 237-382 27-155 (238)
73 COG2227 UbiG 2-polyprenyl-3-me 47.4 61 0.0013 32.9 6.9 100 260-381 59-159 (243)
74 PRK13168 rumA 23S rRNA m(5)U19 47.2 1.9E+02 0.0041 31.3 11.2 101 259-382 296-399 (443)
75 PF12147 Methyltransf_20: Puta 46.9 3.7E+02 0.0081 28.3 13.6 154 257-440 132-295 (311)
76 PRK14896 ksgA 16S ribosomal RN 45.9 1.8E+02 0.0038 29.0 10.1 57 246-311 11-71 (258)
77 PRK04148 hypothetical protein; 45.9 70 0.0015 29.5 6.6 43 252-302 8-50 (134)
78 TIGR00091 tRNA (guanine-N(7)-) 41.1 1.9E+02 0.0041 27.4 9.1 109 261-383 17-132 (194)
79 PLN02446 (5-phosphoribosyl)-5- 40.8 34 0.00074 35.0 4.1 27 257-284 55-81 (262)
80 PRK11088 rrmA 23S rRNA methylt 40.7 1.3E+02 0.0029 30.0 8.3 46 260-309 85-130 (272)
81 TIGR00536 hemK_fam HemK family 40.2 1.3E+02 0.0027 30.5 8.1 49 262-321 116-164 (284)
82 PF03291 Pox_MCEL: mRNA cappin 38.0 1.8E+02 0.0039 30.6 9.1 114 260-381 62-184 (331)
83 PRK14968 putative methyltransf 37.7 68 0.0015 29.3 5.3 42 261-311 24-65 (188)
84 PRK07402 precorrin-6B methylas 37.6 1.3E+02 0.0027 28.4 7.3 64 243-313 23-86 (196)
85 PRK08287 cobalt-precorrin-6Y C 37.4 90 0.002 29.1 6.2 54 252-312 23-76 (187)
86 KOG2904 Predicted methyltransf 36.3 92 0.002 32.6 6.3 59 251-320 136-197 (328)
87 PTZ00338 dimethyladenosine tra 34.7 2.6E+02 0.0057 28.8 9.5 52 252-312 28-79 (294)
88 PF05175 MTS: Methyltransferas 34.3 85 0.0018 29.1 5.4 117 248-381 19-138 (170)
89 PRK09328 N5-glutamine S-adenos 32.8 92 0.002 30.7 5.7 48 258-312 106-153 (275)
90 TIGR03534 RF_mod_PrmC protein- 31.7 94 0.002 30.0 5.5 51 260-321 87-137 (251)
91 PLN02232 ubiquinone biosynthes 30.7 2.5E+02 0.0055 25.7 7.9 79 295-384 1-83 (160)
92 PRK00312 pcm protein-L-isoaspa 30.5 1.1E+02 0.0025 29.0 5.8 55 251-314 69-123 (212)
93 COG2813 RsmC 16S RNA G1207 met 30.3 86 0.0019 32.8 5.1 58 248-312 146-203 (300)
94 PHA03411 putative methyltransf 30.2 93 0.002 32.2 5.3 72 230-309 33-106 (279)
95 PRK03646 dadX alanine racemase 29.9 85 0.0018 33.1 5.1 55 260-318 117-179 (355)
96 cd00635 PLPDE_III_YBL036c_like 28.4 3.1E+02 0.0066 26.5 8.4 65 260-328 117-198 (222)
97 PRK00517 prmA ribosomal protei 28.3 1.4E+02 0.0031 29.5 6.2 60 244-311 101-162 (250)
98 PRK00050 16S rRNA m(4)C1402 me 28.2 1.3E+02 0.0028 31.3 5.9 58 250-313 9-66 (296)
99 COG2890 HemK Methylase of poly 28.1 84 0.0018 32.1 4.6 44 263-313 113-156 (280)
100 COG0357 GidB Predicted S-adeno 27.6 1.8E+02 0.0039 28.9 6.7 62 261-335 68-130 (215)
101 COG1093 SUI2 Translation initi 27.5 1.2E+02 0.0027 31.1 5.5 39 288-326 219-261 (269)
102 TIGR01716 RGG_Cterm transcript 26.3 1.3E+02 0.0029 28.6 5.4 55 157-212 127-182 (220)
103 TIGR00479 rumA 23S rRNA (uraci 26.3 6.4E+02 0.014 27.0 11.1 99 262-382 294-395 (431)
104 PF02527 GidB: rRNA small subu 26.3 1.4E+02 0.0029 28.8 5.4 59 263-333 51-109 (184)
105 TIGR00417 speE spermidine synt 26.1 5.9E+02 0.013 25.5 10.3 46 263-315 75-120 (270)
106 TIGR02129 hisA_euk phosphoribo 26.0 68 0.0015 32.7 3.4 26 257-286 50-75 (253)
107 PRK00121 trmB tRNA (guanine-N( 26.0 1.1E+02 0.0024 29.3 4.8 106 260-381 40-154 (202)
108 TIGR03533 L3_gln_methyl protei 24.6 1.3E+02 0.0029 30.5 5.3 50 261-321 122-171 (284)
109 TIGR01626 ytfJ_HI0045 conserve 24.1 1.3E+02 0.0028 29.1 4.8 85 260-350 59-154 (184)
110 PRK11727 23S rRNA mA1618 methy 24.1 1.7E+02 0.0036 30.8 6.0 48 258-312 112-159 (321)
111 PF05401 NodS: Nodulation prot 23.8 2.4E+02 0.0051 28.0 6.5 111 251-382 33-145 (201)
112 TIGR03840 TMPT_Se_Te thiopurin 23.7 5.3E+02 0.011 25.1 9.1 36 261-305 35-70 (213)
113 KOG1165 Casein kinase (serine/ 23.0 46 0.00099 35.8 1.6 13 258-270 164-176 (449)
114 PRK14121 tRNA (guanine-N(7)-)- 23.0 1.5E+02 0.0032 32.2 5.4 53 252-311 114-166 (390)
115 TIGR00080 pimt protein-L-isoas 22.5 2E+02 0.0042 27.7 5.8 57 251-313 68-124 (215)
116 TIGR03183 DNA_S_dndC putative 22.4 3E+02 0.0065 30.4 7.7 80 250-329 3-92 (447)
117 TIGR00044 pyridoxal phosphate 21.7 1.1E+02 0.0023 30.2 3.8 59 260-319 121-189 (229)
118 PRK13255 thiopurine S-methyltr 21.1 6.6E+02 0.014 24.5 9.2 37 261-306 38-74 (218)
119 PF02056 Glyco_hydro_4: Family 21.1 2.9E+02 0.0062 26.8 6.5 57 272-328 9-65 (183)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=6.6e-97 Score=768.98 Aligned_cols=328 Identities=46% Similarity=0.807 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhhcccCcCccCCCCC-------CccHHH
Q 045494 157 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLNSWLGICSPLTN-------HKSVHC 229 (492)
Q Consensus 157 L~~LLl~CAeAV~~gn~~~A~~lL~~L~~laSp~Gdsp~qRlA~yFaeAL~~Rl~~~~~~~~~~l~~-------~~~~~~ 229 (492)
|++||++||+||++||.+.|+.+|++|++++||+|+ |+||||+||++||.+||.+++++.|.++.. ..+...
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~-~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGD-PMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLA 79 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHH
Confidence 689999999999999999999999999999999996 899999999999999999988877765543 234678
Q ss_pred HHHHHHhcCCccchhhhhhhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCC----CHHHHH
Q 045494 230 AFQVFNNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGT----SMEVLL 305 (492)
Q Consensus 230 A~~~f~e~sP~~kfa~ftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~----~~~~L~ 305 (492)
||+.||+.|||+||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++ +.+.++
T Consensus 80 a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~ 159 (374)
T PF03514_consen 80 AYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQ 159 (374)
T ss_pred HHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 678999
Q ss_pred HHHHHHHHHHHHhCCceEEeee-cccccccccccccccCCCeEEEeec--cccccCCC----CccHHHHHHHHhcCCcEE
Q 045494 306 ETGKQLFNFAKRLGLSFEFHPI-AKKFGDIDASMLQLRRGETLAVHWL--QHSLYDAT----GPDWKTLRLLEELSPRVV 378 (492)
Q Consensus 306 etg~rL~~fA~slgvpFeF~~V-~~~~eel~~~~l~l~~gEaLaVn~~--lh~L~~~~----~~~~~~L~~Ir~L~Pkvv 378 (492)
+||++|.+||+++||||||++| ..+++++++++|.+++||+|||||. +|++.+.+ +|++.||+.||+|+|+||
T Consensus 160 ~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv 239 (374)
T PF03514_consen 160 ETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV 239 (374)
T ss_pred HHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE
Confidence 9999999999999999999995 5678889999999999999999984 67776543 467889999999999999
Q ss_pred EEEeecCCCCC---------------------------CChHHHHHHHHHHHHHHHHHHhhcCCCc-ccccchhhHHHHH
Q 045494 379 TLVEQEISHGG---------------------------DDPNRHRVEHCLLYREINNILAIGGPAR-SGEDKFKHWRSEL 430 (492)
Q Consensus 379 vlvEqea~hns---------------------------d~~eR~~iE~~~lgreI~NiVAcEG~~R-~rhE~~~~Wr~rm 430 (492)
|++|+|+|||+ ++++|..+|+.+||+||+|||||||.+| ||||++++|++||
T Consensus 240 v~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~ 319 (374)
T PF03514_consen 240 VLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRM 319 (374)
T ss_pred EEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHH
Confidence 99999999998 4679999999999999999999999999 9999999999999
Q ss_pred hccCCCeeccCChhHHHHHHHHHhhCCCCCCcEEEeCCcEEEEEECCceeEEEecee
Q 045494 431 ARCNGFAQVPMSGNSMAQAQLILNMFPPAHGYSLIPGDGTLMLGWKGTSLFTASSWT 487 (492)
Q Consensus 431 ~~~AGF~~v~lS~~~~~qAk~ll~~~~~~~gy~v~~~~g~L~LgWk~~pL~s~SAWr 487 (492)
.+ |||+++|+|++++.|||++|++|+ ++||+|++++|||+||||++||+++||||
T Consensus 320 ~~-aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 320 RR-AGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred Hh-cCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 99 999999999999999999999995 78999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.78 E-value=0.015 Score=57.49 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=98.4
Q ss_pred HhcCCccchhhhhhhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHH
Q 045494 235 NNVSPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNF 314 (492)
Q Consensus 235 ~e~sP~~kfa~ftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~f 314 (492)
....|.+...|-.++..+-.-+. ..-+|+|+|.|.|.--.. |+.+. ..|..++|||+.+...++.+.+++..+
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~----l~~~~-~~~~~~v~gvD~S~~ml~~A~~~~~~~ 105 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLS----VRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAY 105 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHH----HHHhc-CCCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 34567777777665543322222 234799999999974333 33321 124589999999988888777776543
Q ss_pred HHHhCCceEEeeecccccccccccccccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcE-EEEEeecCCCCCCCh
Q 045494 315 AKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRV-VTLVEQEISHGGDDP 392 (492)
Q Consensus 315 A~slgvpFeF~~V~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~Pkv-vvlvEqea~hnsd~~ 392 (492)
.. .-.++| +..+..++.. .+..++++|+.+|.+.+ ..+..+|+.| +.|+|.- ++++|.=...+....
T Consensus 106 ~~--~~~v~~--~~~d~~~~~~-----~~~D~vv~~~~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~ 174 (247)
T PRK15451 106 KA--PTPVDV--IEGDIRDIAI-----ENASMVVLNFTLQFLEP--SERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG 174 (247)
T ss_pred CC--CCCeEE--EeCChhhCCC-----CCCCEEehhhHHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhH
Confidence 21 113444 3334433322 22345666766666532 2245666555 7889974 455564332222111
Q ss_pred HHHHHHH--------HHHHHHHHHHH-hhcCCCcccccchhhHHHHHhccCCCeeccC
Q 045494 393 NRHRVEH--------CLLYREINNIL-AIGGPARSGEDKFKHWRSELARCNGFAQVPM 441 (492)
Q Consensus 393 eR~~iE~--------~~lgreI~NiV-AcEG~~R~rhE~~~~Wr~rm~~~AGF~~v~l 441 (492)
...++. .+=..||.... +.++. ...++.++..++|.. |||..+..
T Consensus 175 -~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~--~~~~~~~~~~~~L~~-aGF~~v~~ 228 (247)
T PRK15451 175 -ELLFNMHHDFKRANGYSELEISQKRSMLENV--MLTDSVETHKARLHK-AGFEHSEL 228 (247)
T ss_pred -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh--cccCCHHHHHHHHHH-cCchhHHH
Confidence 111111 01111332211 11221 123677888899999 99996543
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.12 E-value=0.25 Score=48.37 Aligned_cols=106 Identities=12% Similarity=0.246 Sum_probs=63.7
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccccccccc
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASML 339 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l 339 (492)
..-+|+|+|.|.|. ++..|+.+.. .|..++|||+.+...++.+.+++.++.. +.+++| +..+..++..
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~--~~~d~~~~~~--- 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEI--LCNDIRHVEI--- 120 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEE--EECChhhCCC---
Confidence 44579999999995 4455554422 2468999999998888777777654321 223344 3334433322
Q ss_pred cccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEE
Q 045494 340 QLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLV 381 (492)
Q Consensus 340 ~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~Pkvvvlv 381 (492)
.+..++++++.+|.+.+. ....+|+.+ +.|+|.-.+++
T Consensus 121 --~~~d~v~~~~~l~~~~~~--~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 121 --KNASMVILNFTLQFLPPE--DRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred --CCCCEEeeecchhhCCHH--HHHHHHHHHHHhcCCCeEEEE
Confidence 223456666666654321 234566554 77899887765
No 4
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.06 E-value=0.55 Score=47.82 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=84.0
Q ss_pred hHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc--eEEee
Q 045494 249 NQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS--FEFHP 326 (492)
Q Consensus 249 NqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp--FeF~~ 326 (492)
.+.|++.+.-.+.-+|+|+|.+.|. +..+++.+. |.+++|+++.+ ..++.+. +.++..|+. ++|
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-~~~~~a~----~~~~~~gl~~rv~~-- 203 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-GAIDLVN----ENAAEKGVADRMRG-- 203 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-HHHHHHH----HHHHhCCccceEEE--
Confidence 5677787765666799999999994 444455453 66899999864 4454443 344555653 444
Q ss_pred ecccccccccccccccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEE-EEeecCCCCCCChHHHHHHHHHHHH
Q 045494 327 IAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVT-LVEQEISHGGDDPNRHRVEHCLLYR 404 (492)
Q Consensus 327 V~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~Pkvvv-lvEqea~hnsd~~eR~~iE~~~lgr 404 (492)
+..+..+.+ +...+++.+...+|...+ .....+|+.+ +.|+|.-.+ ++|.-.+... .+....+...++.-
T Consensus 204 ~~~d~~~~~-----~~~~D~v~~~~~lh~~~~--~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~ 275 (306)
T TIGR02716 204 IAVDIYKES-----YPEADAVLFCRILYSANE--QLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGA 275 (306)
T ss_pred EecCccCCC-----CCCCCEEEeEhhhhcCCh--HHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-CchhhHHHHHHHHc
Confidence 333332211 112344444444553211 1234567655 789995544 5565443322 22211121211100
Q ss_pred HHHHHHhhcCCCcccccchhhHHHHHhccCCCeecc
Q 045494 405 EINNILAIGGPARSGEDKFKHWRSELARCNGFAQVP 440 (492)
Q Consensus 405 eI~NiVAcEG~~R~rhE~~~~Wr~rm~~~AGF~~v~ 440 (492)
.+. ....++ + .-+.|...|.. |||+.+.
T Consensus 276 ~~~-~~~~~~--~----~~~e~~~ll~~-aGf~~v~ 303 (306)
T TIGR02716 276 GMP-FSVLGF--K----EQARYKEILES-LGYKDVT 303 (306)
T ss_pred ccc-cccccC--C----CHHHHHHHHHH-cCCCeeE
Confidence 000 000111 1 13788888999 9998764
No 5
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=93.77 E-value=1.5 Score=43.29 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=63.5
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecc
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAK 329 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~ 329 (492)
..+++.+.-...-+|+|+|.|.|. +...|+.+. |..++||++.+...++.+ +..++.|. ..
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~~~~~~a--------~~~~~~~~----~~ 79 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSPEMVAAA--------RERGVDAR----TG 79 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHH--------HhcCCcEE----Ec
Confidence 356676665556789999999994 455666663 346899999887655544 33355432 22
Q ss_pred cccccccccccccCCCeEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEEEe
Q 045494 330 KFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTLVE 382 (492)
Q Consensus 330 ~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~PkvvvlvE 382 (492)
+.+++.+. ..=+.|..|..+|.+.+ ...+|+ ..+.|+|.-.+++.
T Consensus 80 d~~~~~~~----~~fD~v~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 80 DVRDWKPK----PDTDVVVSNAALQWVPE----HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ChhhCCCC----CCceEEEEehhhhhCCC----HHHHHHHHHHhCCCCcEEEEE
Confidence 23332111 11245666766665532 244555 55789999877765
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.33 E-value=4.9 Score=40.31 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=65.5
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecc
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAK 329 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~ 329 (492)
..+++.+.-.+.-.|+|+|.|.|. +...|+.+. +|.-++|||+.+.+.++.+.++....++...-..+| +..
T Consensus 63 ~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~--~~~ 134 (261)
T PLN02233 63 RMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEW--IEG 134 (261)
T ss_pred HHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEE--EEc
Confidence 333443433345589999999997 334555543 234599999999888887766653323222223344 223
Q ss_pred cccccccccccccCC--CeEEEeeccccccCCCCccHHHH-HHHHhcCCcEE-EEEee
Q 045494 330 KFGDIDASMLQLRRG--ETLAVHWLQHSLYDATGPDWKTL-RLLEELSPRVV-TLVEQ 383 (492)
Q Consensus 330 ~~eel~~~~l~l~~g--EaLaVn~~lh~L~~~~~~~~~~L-~~Ir~L~Pkvv-vlvEq 383 (492)
+.+++ ...++ ++|.+++.+|.+.+ ...+| ...|-|+|.-. +++|-
T Consensus 135 d~~~l-----p~~~~sfD~V~~~~~l~~~~d----~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 135 DATDL-----PFDDCYFDAITMGYGLRNVVD----RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ccccC-----CCCCCCEeEEEEecccccCCC----HHHHHHHHHHHcCcCcEEEEEEC
Confidence 33333 22222 34556666665432 34455 45588999854 44443
No 7
>PRK06202 hypothetical protein; Provisional
Probab=92.77 E-value=1.1 Score=43.55 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=58.5
Q ss_pred ccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccccccc
Q 045494 257 HRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDA 336 (492)
Q Consensus 257 ~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~ 336 (492)
...+...|+|+|.|.|. ....|.....+ ..|..+||||+.+.+.++.+.++. ...++.+.... .+++..
T Consensus 57 ~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~~~l~~a~~~~----~~~~~~~~~~~----~~~l~~ 125 (232)
T PRK06202 57 SADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDPRAVAFARANP----RRPGVTFRQAV----SDELVA 125 (232)
T ss_pred CCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCHHHHHHHHhcc----ccCCCeEEEEe----cccccc
Confidence 33456789999999996 33333222221 224579999999887776654442 12245443321 112211
Q ss_pred ccccccCCCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEE
Q 045494 337 SMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLV 381 (492)
Q Consensus 337 ~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~Pkvvvlv 381 (492)
.-..=+.|.+|..+|.+.+. ....+|+.+.++.-..+++.
T Consensus 126 ---~~~~fD~V~~~~~lhh~~d~--~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 126 ---EGERFDVVTSNHFLHHLDDA--EVVRLLADSAALARRLVLHN 165 (232)
T ss_pred ---cCCCccEEEECCeeecCChH--HHHHHHHHHHHhcCeeEEEe
Confidence 00112456667666665432 24467777765554555543
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=92.69 E-value=3.1 Score=40.13 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=61.7
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeec
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIA 328 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~ 328 (492)
+.++..+.=.+.-+|+|+|.+.|.--. .|+.+ .+|..++|||+.+...++.+.+++.+ .+++ .+| +.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~----~la~~--~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~v~~--~~ 102 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSI----ALAEA--VGPEGHVIGLDFSENMLSVGRQKVKD----AGLHNVEL--VH 102 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHH----HHHHH--hCCCCEEEEEECCHHHHHHHHHHHHh----cCCCceEE--EE
Confidence 455555543444579999999998333 34433 22456899999987777666666542 3432 232 32
Q ss_pred ccccccccccccccCCCeEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEEE
Q 045494 329 KKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTLV 381 (492)
Q Consensus 329 ~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~Pkvvvlv 381 (492)
.+.+++.. .-..=+.|.+++.+|.+.+ ...+|+ ..+.|+|.-.+++
T Consensus 103 ~d~~~~~~---~~~~fD~V~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 103 GNAMELPF---DDNSFDYVTIGFGLRNVPD----YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred echhcCCC---CCCCccEEEEecccccCCC----HHHHHHHHHHHcCcCeEEEE
Confidence 33333221 1111134555554554322 345555 5578899865554
No 9
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.13 E-value=5.3 Score=43.17 Aligned_cols=154 Identities=12% Similarity=0.136 Sum_probs=81.3
Q ss_pred hHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeec
Q 045494 249 NQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIA 328 (492)
Q Consensus 249 NqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~ 328 (492)
...+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+.+.+..+.++. ...+...+|..
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~~l~~A~~~~----~~~~~~v~~~~-- 320 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVNMISFALERA----IGRKCSVEFEV-- 320 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHHh----hcCCCceEEEE--
Confidence 3456666653445689999999995 3445666653 48999999877776655443 23333455533
Q ss_pred ccccccccccccccCC--CeEEEe-eccccccCCCCccHHHH-HHHHhcCCcEEEEEeecCCC-CCCChHHHHHHHHHHH
Q 045494 329 KKFGDIDASMLQLRRG--ETLAVH-WLQHSLYDATGPDWKTL-RLLEELSPRVVTLVEQEISH-GGDDPNRHRVEHCLLY 403 (492)
Q Consensus 329 ~~~eel~~~~l~l~~g--EaLaVn-~~lh~L~~~~~~~~~~L-~~Ir~L~PkvvvlvEqea~h-nsd~~eR~~iE~~~lg 403 (492)
.+..++. +.++ +.|+.+ .++|. . + ...+| ...+.|+|.-.+++..-... +....+. .
T Consensus 321 ~d~~~~~-----~~~~~fD~I~s~~~l~h~-~---d-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~--------~ 382 (475)
T PLN02336 321 ADCTKKT-----YPDNSFDVIYSRDTILHI-Q---D-KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF--------A 382 (475)
T ss_pred cCcccCC-----CCCCCEEEEEECCccccc-C---C-HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH--------H
Confidence 2222211 1112 223332 23343 2 2 34455 45588999988776532211 1111111 1
Q ss_pred HHHHHHHhhcCCCcccccchhhHHHHHhccCCCeeccCC
Q 045494 404 REINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPMS 442 (492)
Q Consensus 404 reI~NiVAcEG~~R~rhE~~~~Wr~rm~~~AGF~~v~lS 442 (492)
..+...|. ...+...+++.|.. +||+.+...
T Consensus 383 ----~~~~~~g~---~~~~~~~~~~~l~~-aGF~~i~~~ 413 (475)
T PLN02336 383 ----EYIKQRGY---DLHDVQAYGQMLKD-AGFDDVIAE 413 (475)
T ss_pred ----HHHHhcCC---CCCCHHHHHHHHHH-CCCeeeeee
Confidence 11111121 12345677888888 999977543
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=92.09 E-value=3.8 Score=41.13 Aligned_cols=158 Identities=9% Similarity=0.075 Sum_probs=81.8
Q ss_pred hhhhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEe
Q 045494 246 FTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFH 325 (492)
Q Consensus 246 ftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~ 325 (492)
.-+.+.+++.+.-...-+|+|+|.+.|.-- ..|+.+.+ .++|||+.+...++.+.++... .-.++|.
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~~----~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~ 104 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKYG----AHVHGVDICEKMVNIAKLRNSD-----KNKIEFE 104 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhcC----CEEEEEECCHHHHHHHHHHcCc-----CCceEEE
Confidence 345667777776566678999999999732 33444332 5899999887777665554432 1123332
Q ss_pred eecccccccccccccccCC--CeEEEe-eccccccCCCCccHHHHHHH-HhcCCcEEEEE-eecCCCCCCChHHHHHHHH
Q 045494 326 PIAKKFGDIDASMLQLRRG--ETLAVH-WLQHSLYDATGPDWKTLRLL-EELSPRVVTLV-EQEISHGGDDPNRHRVEHC 400 (492)
Q Consensus 326 ~V~~~~eel~~~~l~l~~g--EaLaVn-~~lh~L~~~~~~~~~~L~~I-r~L~Pkvvvlv-Eqea~hnsd~~eR~~iE~~ 400 (492)
. .+..+. ...++ +.|..+ .++|. . ......+|+.+ +.|+|.-.+++ +.-... ....+..+..
T Consensus 105 ~--~D~~~~-----~~~~~~FD~V~s~~~l~h~-~--~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~--~~~~~~~~~~- 171 (263)
T PTZ00098 105 A--NDILKK-----DFPENTFDMIYSRDAILHL-S--YADKKKLFEKCYKWLKPNGILLITDYCADK--IENWDEEFKA- 171 (263)
T ss_pred E--CCcccC-----CCCCCCeEEEEEhhhHHhC-C--HHHHHHHHHHHHHHcCCCcEEEEEEecccc--ccCcHHHHHH-
Confidence 2 122111 11122 233333 34453 1 11245666554 78999977765 322211 1111111111
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhHHHHHhccCCCeeccC
Q 045494 401 LLYREINNILAIGGPARSGEDKFKHWRSELARCNGFAQVPM 441 (492)
Q Consensus 401 ~lgreI~NiVAcEG~~R~rhE~~~~Wr~rm~~~AGF~~v~l 441 (492)
.+...+. ..-+...++..|.. |||+.+.+
T Consensus 172 --------~~~~~~~---~~~~~~~~~~~l~~-aGF~~v~~ 200 (263)
T PTZ00098 172 --------YIKKRKY---TLIPIQEYGDLIKS-CNFQNVVA 200 (263)
T ss_pred --------HHHhcCC---CCCCHHHHHHHHHH-CCCCeeeE
Confidence 1211111 11234567777888 99998765
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=91.04 E-value=0.97 Score=40.93 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=60.9
Q ss_pred CceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeecccccccccc
Q 045494 259 RDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIAKKFGDIDAS 337 (492)
Q Consensus 259 ~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~~~~eel~~~ 337 (492)
.+..+|+|+|.|.|..=..|.+.+ .|..++|||+.+.+.++.+ .+.++..+++ .+| +..++.+++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~~~i~~a----~~~~~~~~~~ni~~--~~~d~~~l~~~ 69 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISEEMIEYA----KKRAKELGLDNIEF--IQGDIEDLPQE 69 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSHHHHHHH----HHHHHHTTSTTEEE--EESBTTCGCGC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcHHHHHHh----hcccccccccccce--EEeehhccccc
Confidence 356789999999996544444422 1345699999987766544 4466777887 455 34455554322
Q ss_pred cccccCCCeEEEeeccccccCCCCccHHHH-HHHHhcCCcEEEEEe
Q 045494 338 MLQLRRGETLAVHWLQHSLYDATGPDWKTL-RLLEELSPRVVTLVE 382 (492)
Q Consensus 338 ~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L-~~Ir~L~PkvvvlvE 382 (492)
+. ..=+.|..+..+|.+.+ ...+| ...+.|+|...+++.
T Consensus 70 -~~-~~~D~I~~~~~l~~~~~----~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 70 -LE-EKFDIIISNGVLHHFPD----PEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp -SS-TTEEEEEEESTGGGTSH----HHHHHHHHHHHEEEEEEEEEE
T ss_pred -cC-CCeeEEEEcCchhhccC----HHHHHHHHHHHcCCCcEEEEE
Confidence 22 11123444444444322 23444 557889988777653
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=90.60 E-value=4.7 Score=42.09 Aligned_cols=151 Identities=15% Similarity=0.092 Sum_probs=78.5
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCC--ceEEeeecccccccccccc
Q 045494 262 VHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGL--SFEFHPIAKKFGDIDASML 339 (492)
Q Consensus 262 VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgv--pFeF~~V~~~~eel~~~~l 339 (492)
-.|+|+|.|.|. +...|+. .+ .++|||+.+.+.++.+.++ ++..++ ..+|. ..+.+++....
T Consensus 133 ~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~s~~~i~~Ar~~----~~~~~~~~~i~~~--~~dae~l~~~~- 196 (322)
T PLN02396 133 LKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDAVDKNVKIARLH----ADMDPVTSTIEYL--CTTAEKLADEG- 196 (322)
T ss_pred CEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeCCHHHHHHHHHH----HHhcCcccceeEE--ecCHHHhhhcc-
Confidence 479999999998 4456664 33 4899999987777655433 222122 33343 22333332110
Q ss_pred cccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEEeecCCCCCCChHHHHHHHHHH-HHHHHHHHhhcCCCc
Q 045494 340 QLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLVEQEISHGGDDPNRHRVEHCLL-YREINNILAIGGPAR 417 (492)
Q Consensus 340 ~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvEqea~hnsd~~eR~~iE~~~l-greI~NiVAcEG~~R 417 (492)
..=++|+....+|.+.+ .+.+|+.+ +-|+|.-.+++.. .+.+ . ..+....+ ...+.+.+- .|...
T Consensus 197 --~~FD~Vi~~~vLeHv~d----~~~~L~~l~r~LkPGG~liist-~nr~--~---~~~~~~i~~~eyi~~~lp-~gth~ 263 (322)
T PLN02396 197 --RKFDAVLSLEVIEHVAN----PAEFCKSLSALTIPNGATVLST-INRT--M---RAYASTIVGAEYILRWLP-KGTHQ 263 (322)
T ss_pred --CCCCEEEEhhHHHhcCC----HHHHHHHHHHHcCCCcEEEEEE-CCcC--H---HHHHHhhhhHHHHHhcCC-CCCcC
Confidence 01123333334444433 34566655 5679988887652 1211 1 11111111 222333333 34333
Q ss_pred -ccccchhhHHHHHhccCCCeeccCC
Q 045494 418 -SGEDKFKHWRSELARCNGFAQVPMS 442 (492)
Q Consensus 418 -~rhE~~~~Wr~rm~~~AGF~~v~lS 442 (492)
.+.-+-+.++..+.+ +||+.+.+.
T Consensus 264 ~~~f~tp~eL~~lL~~-aGf~i~~~~ 288 (322)
T PLN02396 264 WSSFVTPEELSMILQR-ASVDVKEMA 288 (322)
T ss_pred ccCCCCHHHHHHHHHH-cCCeEEEEe
Confidence 333456778888888 999887664
No 13
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=89.01 E-value=8.7 Score=37.79 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=64.7
Q ss_pred hhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeee
Q 045494 248 SNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPI 327 (492)
Q Consensus 248 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V 327 (492)
-+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++||+.+...++.+.+++. + .+|..
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~~~i~~a~~~~~------~--~~~~~- 82 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSPAMLAEARSRLP------D--CQFVE- 82 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHhCC------C--CeEEE-
Confidence 35566777665556789999999983 344566553 34699999998776665544421 1 33322
Q ss_pred cccccccccccccccCCCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEEee
Q 045494 328 AKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQ 383 (492)
Q Consensus 328 ~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvEq 383 (492)
.+.+++.+. .+=+.|+.|..+|.+.+ +...+-+..+.|+|.-.+++..
T Consensus 83 -~d~~~~~~~----~~fD~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 83 -ADIASWQPP----QALDLIFANASLQWLPD---HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CchhccCCC----CCccEEEEccChhhCCC---HHHHHHHHHHhcCCCcEEEEEC
Confidence 222222111 11235556665665433 2333344557889998887753
No 14
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=88.68 E-value=3.6 Score=39.31 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=66.1
Q ss_pred hhhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEee
Q 045494 247 TSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHP 326 (492)
Q Consensus 247 tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~ 326 (492)
++...|++++.-...-+|+|+|.|.|.--.. ||.+ + .++|||+.+...++.+.+ .++.-|++..+..
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~----la~~-g----~~V~~iD~s~~~l~~a~~----~~~~~~~~v~~~~ 83 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSLY----LSLA-G----YDVRAWDHNPASIASVLD----MKARENLPLRTDA 83 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHHH----HHHC-C----CeEEEEECCHHHHHHHHH----HHHHhCCCceeEe
Confidence 5677888888765667999999999974433 3434 2 489999988766655433 4455577644432
Q ss_pred ecccccccccccccccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEE
Q 045494 327 IAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVT 379 (492)
Q Consensus 327 V~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~Pkvvv 379 (492)
.+..... +. ..=+.|+.+..+|.+.. ..+..+++.+ +.|+|.-.+
T Consensus 84 --~d~~~~~---~~-~~fD~I~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 84 --YDINAAA---LN-EDYDFIFSTVVFMFLQA--GRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred --ccchhcc---cc-CCCCEEEEecccccCCH--HHHHHHHHHHHHHhCCCcEE
Confidence 2222111 11 11245555555554422 2345666654 778999763
No 15
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=88.67 E-value=7.6 Score=37.35 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=83.5
Q ss_pred hhhhhhHHHHhhhc--cCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCC-
Q 045494 244 AHFTSNQAILEAFH--RRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGL- 320 (492)
Q Consensus 244 a~ftANqAILEA~~--g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgv- 320 (492)
++-.....+++.+. ..+.-+|+|+|.+.|. +...|+.+ + .++|||+.+.+.+..+.+++.. .++
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~--~---~~v~gvD~s~~~i~~a~~~~~~----~~~~ 103 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR--G---AIVKAVDISEQMVQMARNRAQG----RDVA 103 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC--C---CEEEEEECCHHHHHHHHHHHHh----cCCC
Confidence 34555666777665 2346689999999985 55566654 2 3899999988877766666543 233
Q ss_pred -ceEEeeecccccccccccccccCCCeEEEeeccccccCCCCccHHHHHHHH-hcCCcEEEEEeecCCCCCCChHHHHHH
Q 045494 321 -SFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLE-ELSPRVVTLVEQEISHGGDDPNRHRVE 398 (492)
Q Consensus 321 -pFeF~~V~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir-~L~PkvvvlvEqea~hnsd~~eR~~iE 398 (492)
.++|.. .++.++. ..=+.|+.+..++.+.. .....+++.+. -++|.+++.+-... .. ...
T Consensus 104 ~~i~~~~--~d~~~~~------~~fD~ii~~~~l~~~~~--~~~~~~l~~i~~~~~~~~~i~~~~~~-----~~-~~~-- 165 (219)
T TIGR02021 104 GNVEFEV--NDLLSLC------GEFDIVVCMDVLIHYPA--SDMAKALGHLASLTKERVIFTFAPKT-----AW-LAF-- 165 (219)
T ss_pred CceEEEE--CChhhCC------CCcCEEEEhhHHHhCCH--HHHHHHHHHHHHHhCCCEEEEECCCc-----hH-HHH--
Confidence 344432 2333322 12234433333322211 12345666554 45666655432110 00 000
Q ss_pred HHHHHHHHHHHHhhcCCCc---ccccchhhHHHHHhccCCCeeccCC
Q 045494 399 HCLLYREINNILAIGGPAR---SGEDKFKHWRSELARCNGFAQVPMS 442 (492)
Q Consensus 399 ~~~lgreI~NiVAcEG~~R---~rhE~~~~Wr~rm~~~AGF~~v~lS 442 (492)
.+.+.... .+... ...-+.+.|...+.. +||+.+...
T Consensus 166 ----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~-~Gf~v~~~~ 205 (219)
T TIGR02021 166 ----LKMIGELF--PGSSRATSAYLHPMTDLERALGE-LGWKIVREG 205 (219)
T ss_pred ----HHHHHhhC--cCcccccceEEecHHHHHHHHHH-cCceeeeee
Confidence 01111111 11111 222356778888888 999987663
No 16
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=88.58 E-value=5 Score=38.34 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=64.1
Q ss_pred hhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEee
Q 045494 248 SNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHP 326 (492)
Q Consensus 248 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~ 326 (492)
+.+.+++.+.....-.|+|+|.|.|. +...||.+ | .++|||+.+.+.++.+.++ ++..+++ .++
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g---~~V~gvD~S~~~i~~a~~~----~~~~~~~~v~~-- 82 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G---FDVTAWDKNPMSIANLERI----KAAENLDNLHT-- 82 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C---CEEEEEeCCHHHHHHHHHH----HHHcCCCcceE--
Confidence 45566666665555689999999997 23345554 2 4899999987766654433 3334553 233
Q ss_pred ecccccccccccccccCCCeEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEEE
Q 045494 327 IAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTLV 381 (492)
Q Consensus 327 V~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~Pkvvvlv 381 (492)
+..++.+++. . ..=+.|+.+..+|.+. +..+..+++ ..+.|+|.-.+++
T Consensus 83 ~~~d~~~~~~---~-~~fD~I~~~~~~~~~~--~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 83 AVVDLNNLTF---D-GEYDFILSTVVLMFLE--AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecChhhCCc---C-CCcCEEEEecchhhCC--HHHHHHHHHHHHHHcCCCcEEEE
Confidence 2223333221 1 1123555565555432 223456665 4488899987543
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=88.39 E-value=3.2 Score=36.85 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=70.8
Q ss_pred cCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccccccc
Q 045494 258 RRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDAS 337 (492)
Q Consensus 258 g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~ 337 (492)
..+.-.|+|+|.+.| .| ...|+.+ |. ++||++.+...++. ..+.+.-.... +
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~~~~~~~-----------~~~~~~~~~~~----~---- 71 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDISPQMIEK-----------RNVVFDNFDAQ----D---- 71 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESSHHHHHH-----------TTSEEEEEECH----T----
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECCHHHHhh-----------hhhhhhhhhhh----h----
Confidence 466779999999999 34 4445544 32 99999998766654 22222211111 0
Q ss_pred cccccCC--CeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEE-eecCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 045494 338 MLQLRRG--ETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLV-EQEISHGGDDPNRHRVEHCLLYREINNILAIG 413 (492)
Q Consensus 338 ~l~l~~g--EaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~Pkvvvlv-Eqea~hnsd~~eR~~iE~~~lgreI~NiVAcE 413 (492)
....++ +.|.++..+|.+.+ ...+|+.| +-|+|.-++++ +...+. ....... .. .+.
T Consensus 72 -~~~~~~~fD~i~~~~~l~~~~d----~~~~l~~l~~~LkpgG~l~~~~~~~~~----~~~~~~~---------~~-~~~ 132 (161)
T PF13489_consen 72 -PPFPDGSFDLIICNDVLEHLPD----PEEFLKELSRLLKPGGYLVISDPNRDD----PSPRSFL---------KW-RYD 132 (161)
T ss_dssp -HHCHSSSEEEEEEESSGGGSSH----HHHHHHHHHHCEEEEEEEEEEEEBTTS----HHHHHHH---------HC-CGT
T ss_pred -hhccccchhhHhhHHHHhhccc----HHHHHHHHHHhcCCCCEEEEEEcCCcc----hhhhHHH---------hc-CCc
Confidence 001111 23444445555443 44566555 66888655554 444332 1111111 11 111
Q ss_pred CC-Cc-ccccchhhHHHHHhccCCCeec
Q 045494 414 GP-AR-SGEDKFKHWRSELARCNGFAQV 439 (492)
Q Consensus 414 G~-~R-~rhE~~~~Wr~rm~~~AGF~~v 439 (492)
-. .+ ...-+.+.|+..+++ +||+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~ll~~-~G~~iv 159 (161)
T PF13489_consen 133 RPYGGHVHFFSPDELRQLLEQ-AGFEIV 159 (161)
T ss_dssp CHHTTTTEEBBHHHHHHHHHH-TTEEEE
T ss_pred CccCceeccCCHHHHHHHHHH-CCCEEE
Confidence 10 02 222567899999999 999876
No 18
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=88.21 E-value=19 Score=34.31 Aligned_cols=112 Identities=18% Similarity=0.141 Sum_probs=57.7
Q ss_pred HhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccc
Q 045494 253 LEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFG 332 (492)
Q Consensus 253 LEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~e 332 (492)
++.+.-....+|+|+|.+.|. +...++.+ +|+..++|+++.+...++.+.+++... .+..+..|.. .+..
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~--~d~~ 113 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFSEGMLAVGREKLRDL--GLSGNVEFVQ--GDAE 113 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCCHHHHHHHHHhhccc--ccccCeEEEe--cccc
Confidence 333333345689999999985 22333333 234689999998877666655554321 1122334422 2232
Q ss_pred ccccccccccCCCeEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEEE
Q 045494 333 DIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTLV 381 (492)
Q Consensus 333 el~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~Pkvvvlv 381 (492)
++. +...+-+.|.++..+|...+ ...+|+ ..+.|+|.-.+++
T Consensus 114 ~~~---~~~~~~D~I~~~~~l~~~~~----~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 114 ALP---FPDNSFDAVTIAFGLRNVPD----IDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred cCC---CCCCCccEEEEecccccCCC----HHHHHHHHHHhccCCcEEEE
Confidence 221 11111234444544454322 345554 4477888875544
No 19
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=87.97 E-value=16 Score=34.29 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=61.9
Q ss_pred hhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeee
Q 045494 248 SNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPI 327 (492)
Q Consensus 248 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V 327 (492)
.-+.+++.+.-.....|+|+|.+.|. +...++.+ +|+..++|+++.+...+..+.+++. .+-...|.
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~~~~~~~~~~~~~-----~~~~i~~~-- 93 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFSSEMLEVAKKKSE-----LPLNIEFI-- 93 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECCHHHHHHHHHHhc-----cCCCceEE--
Confidence 33455666655567799999999885 33334433 2334789999988776666655543 22223332
Q ss_pred cccccccccccccccCCCeEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEE-Eeec
Q 045494 328 AKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTL-VEQE 384 (492)
Q Consensus 328 ~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~Pkvvvl-vEqe 384 (492)
..+..++. +...+=+.+.+++.+|... . ...+|+ ..+.|+|.-.++ ++..
T Consensus 94 ~~d~~~~~---~~~~~~D~i~~~~~~~~~~---~-~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 94 QADAEALP---FEDNSFDAVTIAFGLRNVT---D-IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ecchhcCC---CCCCcEEEEEEeeeeCCcc---c-HHHHHHHHHHHcCCCcEEEEEEec
Confidence 22232321 1101112344454444332 2 344554 456788887664 4543
No 20
>PRK08317 hypothetical protein; Provisional
Probab=86.67 E-value=28 Score=32.89 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=58.4
Q ss_pred HHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccc
Q 045494 252 ILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKF 331 (492)
Q Consensus 252 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~ 331 (492)
+++.+.-...-.|+|+|.+.|. |. ..++.+. +|.-++||++.+...++.+.++. ...+...+|.. .+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~~~~~~~~a~~~~----~~~~~~~~~~~--~d~ 78 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDRSEAMLALAKERA----AGLGPNVEFVR--GDA 78 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeCCHHHHHHHHHHh----hCCCCceEEEe--ccc
Confidence 5566665566689999999874 33 3344333 24569999998877666554441 11222333432 222
Q ss_pred cccccccccccCCCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEEe
Q 045494 332 GDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVE 382 (492)
Q Consensus 332 eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvE 382 (492)
.++. +.-..-+.|.++..++.+.+ +...+=+..+.|+|.-.++..
T Consensus 79 ~~~~---~~~~~~D~v~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 79 DGLP---FPDGSFDAVRSDRVLQHLED---PARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred ccCC---CCCCCceEEEEechhhccCC---HHHHHHHHHHHhcCCcEEEEE
Confidence 2211 11011133444444443322 223333455778998866543
No 21
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=86.32 E-value=2.4 Score=43.09 Aligned_cols=126 Identities=19% Similarity=0.277 Sum_probs=68.6
Q ss_pred hhhhhhHHHHhhhc----cCceeEEEEccccCcc-chHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHh
Q 045494 244 AHFTSNQAILEAFH----RRDRVHIIDLDIMQGL-QWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRL 318 (492)
Q Consensus 244 a~ftANqAILEA~~----g~~~VHIIDfgI~~G~-QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~sl 318 (492)
+++++-..||+.++ +-+--+|+|||.|-|. =|.. .+.+ +-...+|+|+.+...+ +.|+.|.+-....
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~s~~~~-~l~~~l~~~~~~~ 84 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDRSPEML-ELAKRLLRAGPNN 84 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecCCHHHH-HHHHHHHhccccc
Confidence 55667777777776 3355689999999874 3322 1211 1246899999886655 4666665533211
Q ss_pred CCceEEeeecccccccccccccccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEEeecCCC
Q 045494 319 GLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLVEQEISH 387 (492)
Q Consensus 319 gvpFeF~~V~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvEqea~h 387 (492)
. ..+... .+..+...+.+.+-|++...|--|.+ ..+..+++.+ ..++| ++|+||+..-.
T Consensus 85 ~-~~~~~~------~~~~~~~~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~-~LVlVEpGt~~ 144 (274)
T PF09243_consen 85 R-NAEWRR------VLYRDFLPFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAP-VLVLVEPGTPA 144 (274)
T ss_pred c-cchhhh------hhhcccccCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccC-cEEEEcCCChH
Confidence 1 011111 11111122333344444443433333 4566777776 56666 88889976543
No 22
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=86.19 E-value=8.8 Score=37.48 Aligned_cols=147 Identities=23% Similarity=0.304 Sum_probs=74.2
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecc
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAK 329 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~ 329 (492)
..++++..=...-+|||+|-+.|. +..+|+.+. |.||+|..+.|. .++.+.+ .=..+|.+ .
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~---P~l~~~v~Dlp~-v~~~~~~---------~~rv~~~~--g 150 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY---PNLRATVFDLPE-VIEQAKE---------ADRVEFVP--G 150 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS---TTSEEEEEE-HH-HHCCHHH---------TTTEEEEE--S
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC---CCCcceeeccHh-hhhcccc---------cccccccc--c
Confidence 345555554445589999999993 333444333 679999998753 2322222 22334432 1
Q ss_pred cccccccccccccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCc---EEEEEeecCCCCCCChHHHHHHHHHHHHH
Q 045494 330 KFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPR---VVTLVEQEISHGGDDPNRHRVEHCLLYRE 405 (492)
Q Consensus 330 ~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~Pk---vvvlvEqea~hnsd~~eR~~iE~~~lgre 405 (492)
++- +.+.. .+++.+..++|...+. ....+|+.+ +.|.|. .++|+|.=.+.....+... |. ..--.
T Consensus 151 d~f----~~~P~--~D~~~l~~vLh~~~d~--~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~--~~-~~~~d 219 (241)
T PF00891_consen 151 DFF----DPLPV--ADVYLLRHVLHDWSDE--DCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSA--EM-DALFD 219 (241)
T ss_dssp -TT----TCCSS--ESEEEEESSGGGS-HH--HHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHH--HH-HHHHH
T ss_pred cHH----hhhcc--ccceeeehhhhhcchH--HHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHH--HH-HHHHH
Confidence 111 11222 3345455456654332 234567665 678876 6677777555444333322 11 11224
Q ss_pred HHHHHhhcCCCcccccchhhHHHHH
Q 045494 406 INNILAIGGPARSGEDKFKHWRSEL 430 (492)
Q Consensus 406 I~NiVAcEG~~R~rhE~~~~Wr~rm 430 (492)
|.-.+.+.|.+| +..+|++.+
T Consensus 220 l~ml~~~~G~~r----t~~e~~~ll 240 (241)
T PF00891_consen 220 LNMLVLTGGKER----TEEEWEALL 240 (241)
T ss_dssp HHHHHHHSSS-E----EHHHHHHHH
T ss_pred HHHHHhcCCCCc----CHHHHHHHh
Confidence 544566678666 346777654
No 23
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=84.92 E-value=7 Score=39.61 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=56.0
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccccccccccccc
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLR 342 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~l~ 342 (492)
+|+|+|.|.|. +...||.+ | .++|||+.+...++.+. +.|+..++++++.. .+..+.. +. .
T Consensus 123 ~vLDlGcG~G~----~~~~la~~--g---~~V~avD~s~~ai~~~~----~~~~~~~l~v~~~~--~D~~~~~---~~-~ 183 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL--G---FDVTAVDINQQSLENLQ----EIAEKENLNIRTGL--YDINSAS---IQ-E 183 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC--C---CEEEEEECCHHHHHHHH----HHHHHcCCceEEEE--echhccc---cc-C
Confidence 79999999997 33445554 2 58999999877665443 44556677655532 2222211 10 1
Q ss_pred CCCeEEEeeccccccCCCCccHHHHHH-HHhcCCcEEEE
Q 045494 343 RGETLAVHWLQHSLYDATGPDWKTLRL-LEELSPRVVTL 380 (492)
Q Consensus 343 ~gEaLaVn~~lh~L~~~~~~~~~~L~~-Ir~L~Pkvvvl 380 (492)
.=+.|..++.+|.+.. .....+++. -+.|+|.-+.+
T Consensus 184 ~fD~I~~~~vl~~l~~--~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 184 EYDFILSTVVLMFLNR--ERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred CccEEEEcchhhhCCH--HHHHHHHHHHHHhcCCCcEEE
Confidence 1134555555555422 234566654 47889987643
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=84.70 E-value=16 Score=36.41 Aligned_cols=147 Identities=14% Similarity=0.208 Sum_probs=74.9
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeeccccccccccccc
Q 045494 262 VHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIAKKFGDIDASMLQ 340 (492)
Q Consensus 262 VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~~~~eel~~~~l~ 340 (492)
=+|+|+|.+.|.--.. ++... | +.-+||||+.+.+.++.+.++. +..|++ .+| +..+.+++.
T Consensus 79 ~~VLDiG~G~G~~~~~----~a~~~-g-~~~~v~gvD~s~~~l~~A~~~~----~~~g~~~v~~--~~~d~~~l~----- 141 (272)
T PRK11873 79 ETVLDLGSGGGFDCFL----AARRV-G-PTGKVIGVDMTPEMLAKARANA----RKAGYTNVEF--RLGEIEALP----- 141 (272)
T ss_pred CEEEEeCCCCCHHHHH----HHHHh-C-CCCEEEEECCCHHHHHHHHHHH----HHcCCCCEEE--EEcchhhCC-----
Confidence 3899999988742221 22222 1 3458999999877776665543 334442 333 223333332
Q ss_pred ccCC--CeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEE-eecCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCc
Q 045494 341 LRRG--ETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLV-EQEISHGGDDPNRHRVEHCLLYREINNILAIGGPAR 417 (492)
Q Consensus 341 l~~g--EaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~Pkvvvlv-Eqea~hnsd~~eR~~iE~~~lgreI~NiVAcEG~~R 417 (492)
+.++ +.|..|+.+|...+ ....+=...+-|+|.-.+++ +.-... +.+.. +..++.-...|.+.
T Consensus 142 ~~~~~fD~Vi~~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~~~~~~--~~~~~-------~~~~~~~~~~~~~~-- 207 (272)
T PRK11873 142 VADNSVDVIISNCVINLSPD---KERVFKEAFRVLKPGGRFAISDVVLRG--ELPEE-------IRNDAELYAGCVAG-- 207 (272)
T ss_pred CCCCceeEEEEcCcccCCCC---HHHHHHHHHHHcCCCcEEEEEEeeccC--CCCHH-------HHHhHHHHhccccC--
Confidence 2222 24555776665322 22333446688899866544 322211 11111 11122211123221
Q ss_pred ccccchhhHHHHHhccCCCeeccCC
Q 045494 418 SGEDKFKHWRSELARCNGFAQVPMS 442 (492)
Q Consensus 418 ~rhE~~~~Wr~rm~~~AGF~~v~lS 442 (492)
......|...|.. +||..+.+.
T Consensus 208 --~~~~~e~~~~l~~-aGf~~v~i~ 229 (272)
T PRK11873 208 --ALQEEEYLAMLAE-AGFVDITIQ 229 (272)
T ss_pred --CCCHHHHHHHHHH-CCCCceEEE
Confidence 1234678888999 999987653
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=84.44 E-value=2.8 Score=35.29 Aligned_cols=104 Identities=16% Similarity=0.094 Sum_probs=57.5
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccccccccccccc
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLR 342 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~l~ 342 (492)
+|+|+|.+.|.-=..|.+ .++ ..++|||+.+.+.++.+.++..+.... -..+|.. .++ ... ....
T Consensus 4 ~vLDlGcG~G~~~~~l~~---~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~--~d~-~~~---~~~~ 68 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALAR---LFP----GARVVGVDISPEMLEIARERAAEEGLS--DRITFVQ--GDA-EFD---PDFL 68 (112)
T ss_dssp EEEEETTTTSHHHHHHHH---HHT----TSEEEEEESSHHHHHHHHHHHHHTTTT--TTEEEEE--SCC-HGG---TTTS
T ss_pred EEEEEcCcCCHHHHHHHh---cCC----CCEEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEE--Ccc-ccC---cccC
Confidence 689999999854333333 233 378999999988888887777443332 3344432 222 100 1110
Q ss_pred -CCCeEEEee-ccccccCCCCccHHHHHHH-HhcCCcEEEEEe
Q 045494 343 -RGETLAVHW-LQHSLYDATGPDWKTLRLL-EELSPRVVTLVE 382 (492)
Q Consensus 343 -~gEaLaVn~-~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvE 382 (492)
+=+.|.++. .+|.+... ..+..+|+.+ +.|+|.-.++++
T Consensus 69 ~~~D~v~~~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 69 EPFDLVICSGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SCEEEEEECSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEECCCccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 112344444 23323222 2345667655 688998888765
No 26
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=84.01 E-value=24 Score=36.82 Aligned_cols=147 Identities=13% Similarity=0.114 Sum_probs=78.0
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHH-Hh-CCceEEeeecccccccccc
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAK-RL-GLSFEFHPIAKKFGDIDAS 337 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~-sl-gvpFeF~~V~~~~eel~~~ 337 (492)
+...|+|+|.|.|. +...|+.+ + .++|||+.+...++...++..+.-. .. +...+|.. .++++++
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~--~Dl~~l~-- 210 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA--NDLESLS-- 210 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEE--cchhhcC--
Confidence 45689999999987 44455544 2 4899999998888777666543210 01 22344432 2233221
Q ss_pred cccccCCCeEEEee-ccccccCCCCccHHHHHHHHhcCCcEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCC
Q 045494 338 MLQLRRGETLAVHW-LQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYREINNILAIGGPA 416 (492)
Q Consensus 338 ~l~l~~gEaLaVn~-~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvEqea~hnsd~~eR~~iE~~~lgreI~NiVAcEG~~ 416 (492)
..=+.|+++. ++| +.+ .....+++.++.+.|..+++.-... ...+..++. +.... .|..
T Consensus 211 ----~~fD~Vv~~~vL~H-~p~--~~~~~ll~~l~~l~~g~liIs~~p~-----~~~~~~l~~------~g~~~--~g~~ 270 (315)
T PLN02585 211 ----GKYDTVTCLDVLIH-YPQ--DKADGMIAHLASLAEKRLIISFAPK-----TLYYDILKR------IGELF--PGPS 270 (315)
T ss_pred ----CCcCEEEEcCEEEe-cCH--HHHHHHHHHHHhhcCCEEEEEeCCc-----chHHHHHHH------HHhhc--CCCC
Confidence 0112343333 344 222 1244678888888888887743211 111111111 11112 1433
Q ss_pred c-ccc--cchhhHHHHHhccCCCeecc
Q 045494 417 R-SGE--DKFKHWRSELARCNGFAQVP 440 (492)
Q Consensus 417 R-~rh--E~~~~Wr~rm~~~AGF~~v~ 440 (492)
+ .+. -+.+.++..+.. +||+...
T Consensus 271 ~~~r~y~~s~eel~~lL~~-AGf~v~~ 296 (315)
T PLN02585 271 KATRAYLHAEADVERALKK-AGWKVAR 296 (315)
T ss_pred cCceeeeCCHHHHHHHHHH-CCCEEEE
Confidence 3 221 245778888888 9999653
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=83.97 E-value=8.4 Score=38.11 Aligned_cols=112 Identities=16% Similarity=0.093 Sum_probs=62.6
Q ss_pred HHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccc
Q 045494 251 AILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKK 330 (492)
Q Consensus 251 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~ 330 (492)
.|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|||+.+.+.++.+.+++ ++.|+.-....+..+
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~--g---~~v~~vD~s~~~l~~a~~~~----~~~g~~~~v~~~~~d 101 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL--G---HQVILCDLSAEMIQRAKQAA----EAKGVSDNMQFIHCA 101 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc--C---CEEEEEECCHHHHHHHHHHH----HhcCCccceEEEEcC
Confidence 4666655 344699999999994 44556655 2 48999999888777665554 334553222223333
Q ss_pred ccccccccccccCCCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEE
Q 045494 331 FGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLV 381 (492)
Q Consensus 331 ~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~Pkvvvlv 381 (492)
..++... .-..=..|.++..+|.+. ++...+-...+-|+|.-.+++
T Consensus 102 ~~~l~~~--~~~~fD~V~~~~vl~~~~---~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 102 AQDIAQH--LETPVDLILFHAVLEWVA---DPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HHHHhhh--cCCCCCEEEehhHHHhhC---CHHHHHHHHHHHcCCCeEEEE
Confidence 3333211 011113444444455442 233333445578999988764
No 28
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=83.83 E-value=7.9 Score=37.50 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=56.2
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccccccccccccc
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLR 342 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~l~ 342 (492)
.|+|+|.|.|..-..|.+ +. |..++|||+.+.+.++.+.+++. ++. |. ..+..+ ...
T Consensus 46 ~VLDiGCG~G~~~~~L~~----~~---~~~~v~giDiS~~~l~~A~~~~~------~~~--~~--~~d~~~------~~~ 102 (204)
T TIGR03587 46 SILELGANIGMNLAALKR----LL---PFKHIYGVEINEYAVEKAKAYLP------NIN--II--QGSLFD------PFK 102 (204)
T ss_pred cEEEEecCCCHHHHHHHH----hC---CCCeEEEEECCHHHHHHHHhhCC------CCc--EE--EeeccC------CCC
Confidence 499999999965555433 32 23689999999887776654421 222 21 111111 011
Q ss_pred CC--CeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEEeecC
Q 045494 343 RG--ETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEI 385 (492)
Q Consensus 343 ~g--EaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvEqea 385 (492)
++ +.|..+..+|.+ + +.....+++.+.+..=+.++++|...
T Consensus 103 ~~sfD~V~~~~vL~hl-~-p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHI-N-PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred CCCEEEEEECChhhhC-C-HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 12 234445444433 2 23456778877777777888888654
No 29
>PLN02244 tocopherol O-methyltransferase
Probab=83.65 E-value=37 Score=35.46 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=54.4
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCC--ceEEeeecccccccccc
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGL--SFEFHPIAKKFGDIDAS 337 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgv--pFeF~~V~~~~eel~~~ 337 (492)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+...++.+.+ .++..|+ ..+|. ..+..++.
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~~i~~a~~----~~~~~g~~~~v~~~--~~D~~~~~-- 181 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPVQAARANA----LAAAQGLSDKVSFQ--VADALNQP-- 181 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHH----HHHhcCCCCceEEE--EcCcccCC--
Confidence 34479999999985 4556666543 489999988766554433 3444455 34553 22333322
Q ss_pred cccccCC--CeEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEEE
Q 045494 338 MLQLRRG--ETLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTLV 381 (492)
Q Consensus 338 ~l~l~~g--EaLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~Pkvvvlv 381 (492)
..++ +.|..+..+|.+.+ ...+|+ ..|-|+|.-.+++
T Consensus 182 ---~~~~~FD~V~s~~~~~h~~d----~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 182 ---FEDGQFDLVWSMESGEHMPD----KRKFVQELARVAAPGGRIII 221 (340)
T ss_pred ---CCCCCccEEEECCchhccCC----HHHHHHHHHHHcCCCcEEEE
Confidence 2222 33444433333322 345554 5588999755443
No 30
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=83.08 E-value=38 Score=32.66 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=76.2
Q ss_pred cCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccccccc
Q 045494 258 RRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDAS 337 (492)
Q Consensus 258 g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~ 337 (492)
.....+|+|+|.+.|.- ...++.+ + .++|+++.+...+..+.+++. ..+...+|.. .+..++...
T Consensus 46 ~~~~~~vLdiG~G~G~~----~~~l~~~--~---~~v~~iD~s~~~~~~a~~~~~----~~~~~~~~~~--~~~~~~~~~ 110 (233)
T PRK05134 46 GLFGKRVLDVGCGGGIL----SESMARL--G---ADVTGIDASEENIEVARLHAL----ESGLKIDYRQ--TTAEELAAE 110 (233)
T ss_pred CCCCCeEEEeCCCCCHH----HHHHHHc--C---CeEEEEcCCHHHHHHHHHHHH----HcCCceEEEe--cCHHHhhhh
Confidence 34456899999998863 3344443 2 469999988777766555543 2344445532 222222100
Q ss_pred cccccCCCeEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEEEeecCCCCCCChHHHHHHHHHHHHH-HHHHHhhcCC
Q 045494 338 MLQLRRGETLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYRE-INNILAIGGP 415 (492)
Q Consensus 338 ~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~PkvvvlvEqea~hnsd~~eR~~iE~~~lgre-I~NiVAcEG~ 415 (492)
.-..-+.|+++..++.. .+ ...+|+ ..+-|+|.-.+++..- +.+ .+..... +...+ +..... .+.
T Consensus 111 --~~~~fD~Ii~~~~l~~~---~~-~~~~l~~~~~~L~~gG~l~v~~~-~~~----~~~~~~~-~~~~~~~~~~~~-~~~ 177 (233)
T PRK05134 111 --HPGQFDVVTCMEMLEHV---PD-PASFVRACAKLVKPGGLVFFSTL-NRN----LKSYLLA-IVGAEYVLRMLP-KGT 177 (233)
T ss_pred --cCCCccEEEEhhHhhcc---CC-HHHHHHHHHHHcCCCcEEEEEec-CCC----hHHHHHH-HhhHHHHhhhcC-ccc
Confidence 00111234333333322 22 344554 4466888866655421 111 1111111 12222 222222 121
Q ss_pred Cc-ccccchhhHHHHHhccCCCeeccCC
Q 045494 416 AR-SGEDKFKHWRSELARCNGFAQVPMS 442 (492)
Q Consensus 416 ~R-~rhE~~~~Wr~rm~~~AGF~~v~lS 442 (492)
.. .+--+...|...+.. +||..+...
T Consensus 178 ~~~~~~~~~~~~~~~l~~-~Gf~~v~~~ 204 (233)
T PRK05134 178 HDYKKFIKPSELAAWLRQ-AGLEVQDIT 204 (233)
T ss_pred CchhhcCCHHHHHHHHHH-CCCeEeeee
Confidence 11 112345679999999 999988663
No 31
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=82.33 E-value=5.3 Score=40.24 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=39.7
Q ss_pred cCceeEEEEccccCccchHHHHHHHhcCCC--CCCeEEEeecCCCHHHHHHHHHH
Q 045494 258 RRDRVHIIDLDIMQGLQWPALFHILATRNE--GPPHLRMTGMGTSMEVLLETGKQ 310 (492)
Q Consensus 258 g~~~VHIIDfgI~~G~QWpsLiqaLA~R~g--GPP~LRITgI~~~~~~L~etg~r 310 (492)
..+.++|.|.|.+.|--.-+|--.|++... ..+..+|+|++.+...|+.+.+.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 346799999999999887777665655422 13468999999998888777654
No 32
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=79.55 E-value=20 Score=33.91 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=30.2
Q ss_pred HHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHH
Q 045494 251 AILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLE 306 (492)
Q Consensus 251 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~e 306 (492)
.|.+.+... -+|+|+|.+.|. ++..|+.+.+ .+++||+.+.+.++.
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s~~~i~~ 51 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEIDQDGVLA 51 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCCHHHHHH
Confidence 455555433 379999999995 5566765532 356999987665544
No 33
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=78.94 E-value=10 Score=36.01 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=60.3
Q ss_pred hhHHHHhhhcc---CceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEE
Q 045494 248 SNQAILEAFHR---RDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEF 324 (492)
Q Consensus 248 ANqAILEA~~g---~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF 324 (492)
..+.+++.+.. .+..+|+|+|.+.|.- ...|+.+ + |..++|+++.+.+.+..+.+++. . ++ +|
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~----~~~l~~~--~-~~~~~~~~D~~~~~~~~~~~~~~---~--~~--~~ 84 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYL----TRALLKR--F-PQAEFIALDISAGMLAQAKTKLS---E--NV--QF 84 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHH----HHHHHHh--C-CCCcEEEEeChHHHHHHHHHhcC---C--CC--eE
Confidence 33445555543 2346899999999963 3333333 2 45679999988776665555443 0 22 22
Q ss_pred eeecccccccccccccccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEEe
Q 045494 325 HPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLVE 382 (492)
Q Consensus 325 ~~V~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvE 382 (492)
+..+.+++... -..-+.|+.+..+|.+.+ ...+|+.+ +.|+|.-++++.
T Consensus 85 --~~~d~~~~~~~---~~~fD~vi~~~~l~~~~~----~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 85 --ICGDAEKLPLE---DSSFDLIVSNLALQWCDD----LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred --EecchhhCCCC---CCceeEEEEhhhhhhccC----HHHHHHHHHHHcCCCcEEEEE
Confidence 33333332211 111234555555554322 34566554 678998777664
No 34
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=78.52 E-value=2 Score=34.39 Aligned_cols=91 Identities=25% Similarity=0.256 Sum_probs=49.1
Q ss_pred EEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccccccccccccCC
Q 045494 265 IDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRG 344 (492)
Q Consensus 265 IDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~l~~g 344 (492)
+|+|.+.|.....|.+. +..++|+++.+.+.++.+.+++ +..+++ | +..+.++ +.+.++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~----~~~~~~--~--~~~d~~~-----l~~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRL----KNEGVS--F--RQGDAED-----LPFPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHT----TTSTEE--E--EESBTTS-----SSS-TT
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhcc----cccCch--h--eeehHHh-----Cccccc
Confidence 58888888777766663 3479999999877665544433 223333 2 2222333 333333
Q ss_pred C--eEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEE
Q 045494 345 E--TLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTL 380 (492)
Q Consensus 345 E--aLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~Pkvvvl 380 (492)
- .|..+..+|.+ .....+++ ..|-|+|.-..+
T Consensus 60 sfD~v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 60 SFDVVFSNSVLHHL----EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -EEEEEEESHGGGS----SHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccceeec----cCHHHHHHHHHHHcCcCeEEe
Confidence 2 34444445544 23455554 557788876654
No 35
>PRK05785 hypothetical protein; Provisional
Probab=77.39 E-value=11 Score=37.04 Aligned_cols=91 Identities=9% Similarity=0.058 Sum_probs=51.2
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccccccccccc
Q 045494 261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQ 340 (492)
Q Consensus 261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~ 340 (492)
.-.|+|+|.|.|.- ...|+.+.+ .++|||+.+.+.++...++ .+ + +..+.+++ .
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S~~Ml~~a~~~---------~~--~--~~~d~~~l-----p 105 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYAENMLKMNLVA---------DD--K--VVGSFEAL-----P 105 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCCHHHHHHHHhc---------cc--e--EEechhhC-----C
Confidence 34799999999944 334554432 4899999988777654332 11 1 22233333 2
Q ss_pred ccCC--CeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEEe
Q 045494 341 LRRG--ETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLVE 382 (492)
Q Consensus 341 l~~g--EaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvE 382 (492)
..++ ++|.+++.+|.+.+ .+.+|+.+ |-|+|.+ +++|
T Consensus 106 ~~d~sfD~v~~~~~l~~~~d----~~~~l~e~~RvLkp~~-~ile 145 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASDN----IEKVIAEFTRVSRKQV-GFIA 145 (226)
T ss_pred CCCCCEEEEEecChhhccCC----HHHHHHHHHHHhcCce-EEEE
Confidence 2223 34555665665432 45566544 6788954 3444
No 36
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=77.11 E-value=30 Score=37.47 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=59.9
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecc
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAK 329 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~ 329 (492)
..|++.+...+.-+|+|+|.|.|.-- ..|+.+. -++|||+.+...++...+ + ....-..+|. ..
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~~-----~~v~giD~s~~~l~~a~~-~----~~~~~~i~~~--~~ 90 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKKA-----GQVIALDFIESVIKKNES-I----NGHYKNVKFM--CA 90 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhhC-----CEEEEEeCCHHHHHHHHH-H----hccCCceEEE--Ee
Confidence 45566665444448999999999544 3455442 278999988776654221 1 1111123332 22
Q ss_pred cccccccccccccCC--CeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEEe
Q 045494 330 KFGDIDASMLQLRRG--ETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLVE 382 (492)
Q Consensus 330 ~~eel~~~~l~l~~g--EaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvE 382 (492)
+..+. .+...++ +.|++++.+|.+.+. ....+|+.+ +-|+|.-.++..
T Consensus 91 d~~~~---~~~~~~~~fD~I~~~~~l~~l~~~--~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 91 DVTSP---DLNISDGSVDLIFSNWLLMYLSDK--EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ccccc---ccCCCCCCEEEEehhhhHHhCCHH--HHHHHHHHHHHhcCCCeEEEEE
Confidence 22111 1112122 356666666655331 245666655 558999887764
No 37
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=76.49 E-value=21 Score=36.49 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=68.6
Q ss_pred HHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccc
Q 045494 252 ILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKF 331 (492)
Q Consensus 252 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~ 331 (492)
|.+++. ....|||+|.|.|.-=..|++++.. ..++|||+-+.+.|+.+.++|.+- --+++ +..|..+.
T Consensus 57 ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~--v~~i~gD~ 124 (301)
T TIGR03438 57 IAAATG--AGCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALAAD--YPQLE--VHGICADF 124 (301)
T ss_pred HHHhhC--CCCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHHhh--CCCce--EEEEEEcc
Confidence 444443 2357999999999777778887743 378999999999999988888641 12344 33444444
Q ss_pred cc-cccccccccCCCeEEEee--ccccccCCCCccHHHHHHH-HhcCCcEEEEEeecC
Q 045494 332 GD-IDASMLQLRRGETLAVHW--LQHSLYDATGPDWKTLRLL-EELSPRVVTLVEQEI 385 (492)
Q Consensus 332 ee-l~~~~l~l~~gEaLaVn~--~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvEqea 385 (492)
.+ +.... ....+..+++.+ .++.+. +.....+|+.+ +.|+|.-..++.-+.
T Consensus 125 ~~~~~~~~-~~~~~~~~~~~~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 125 TQPLALPP-EPAAGRRLGFFPGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred cchhhhhc-ccccCCeEEEEecccccCCC--HHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 33 11000 000112344432 233332 12244677776 678998766654433
No 38
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=74.50 E-value=28 Score=32.10 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=59.0
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecc
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAK 329 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~ 329 (492)
+.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+.+...++.+.+++.. . -.+ ..+..
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~~~~~~~~~~~~~----~-~~v--~ii~~ 66 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDPRLAPRLREKFAA----A-DNL--TVIHG 66 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCHHHHHHHHHHhcc----C-CCE--EEEEC
Confidence 346666653344489999999886 44555555 2 3899999887766666555432 1 123 33444
Q ss_pred cccccccccccccCCCeEEEeeccccccCCCCccHHHHHHHHh--cCCcEEEEEeec
Q 045494 330 KFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEE--LSPRVVTLVEQE 384 (492)
Q Consensus 330 ~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~--L~PkvvvlvEqe 384 (492)
+..++..... .-..|+-|...|. ..+.+.+.++. +.+..+++++.|
T Consensus 67 D~~~~~~~~~---~~d~vi~n~Py~~------~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 67 DALKFDLPKL---QPYKVVGNLPYNI------STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred chhcCCcccc---CCCEEEECCCccc------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 4444332210 1134555654442 11233334433 336777777754
No 39
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=74.31 E-value=39 Score=35.71 Aligned_cols=142 Identities=11% Similarity=0.026 Sum_probs=73.4
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccccccccc
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASML 339 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l 339 (492)
...+|+|+|.+.|.-.. .|+.+.++ .++|+++.+.+.++.+.++.. .-++. | +..+.+++...
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~~---~~VtgVD~S~~mL~~A~~k~~----~~~i~--~--i~gD~e~lp~~-- 175 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVDA---KNVTILDQSPHQLAKAKQKEP----LKECK--I--IEGDAEDLPFP-- 175 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCCC---CEEEEEECCHHHHHHHHHhhh----ccCCe--E--EeccHHhCCCC--
Confidence 45689999999997333 34433322 589999988777766555421 12332 2 33333333211
Q ss_pred cccCCCeEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 045494 340 QLRRGETLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYREINNILAIGGPARS 418 (492)
Q Consensus 340 ~l~~gEaLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~PkvvvlvEqea~hnsd~~eR~~iE~~~lgreI~NiVAcEG~~R~ 418 (492)
-..=+.|+++..+|.+.+ .+.+|+ ..+.|+|.-.+++...... +. .+.+...+.-. .
T Consensus 176 -~~sFDvVIs~~~L~~~~d----~~~~L~e~~rvLkPGG~LvIi~~~~p--~~---------~~~r~~~~~~~--~---- 233 (340)
T PLN02490 176 -TDYADRYVSAGSIEYWPD----PQRGIKEAYRVLKIGGKACLIGPVHP--TF---------WLSRFFADVWM--L---- 233 (340)
T ss_pred -CCceeEEEEcChhhhCCC----HHHHHHHHHHhcCCCcEEEEEEecCc--ch---------hHHHHhhhhhc--c----
Confidence 111134555555554332 234555 5578999877654321111 00 11111111110 0
Q ss_pred cccchhhHHHHHhccCCCeeccCC
Q 045494 419 GEDKFKHWRSELARCNGFAQVPMS 442 (492)
Q Consensus 419 rhE~~~~Wr~rm~~~AGF~~v~lS 442 (492)
.-+.+.+.+.|.. +||+.+.+.
T Consensus 234 -~~t~eEl~~lL~~-aGF~~V~i~ 255 (340)
T PLN02490 234 -FPKEEEYIEWFTK-AGFKDVKLK 255 (340)
T ss_pred -CCCHHHHHHHHHH-CCCeEEEEE
Confidence 1134677788888 999988764
No 40
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=72.38 E-value=11 Score=37.30 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=59.8
Q ss_pred HHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccc
Q 045494 251 AILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKK 330 (492)
Q Consensus 251 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~ 330 (492)
.+++.+...+-..|+|++.|.|--+..| +.+.+ |.-+|||++.+.+-|+.+.+++.+.... ..+| +..+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~~--~~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~~--v~~d 106 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRVG--PNGKVVGVDISPGMLEVARKKLKREGLQ---NIEF--VQGD 106 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGSS-----EEEEEES-HHHHHHHHHHHHHTT-----SEEE--EE-B
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHCC--CccEEEEecCCHHHHHHHHHHHHhhCCC---CeeE--EEcC
Confidence 4455556666679999999999655444 43322 4459999999999898888888765433 3333 3333
Q ss_pred ccccccccccccCCC--eEEEeeccccccCCCCccHHHHHHHHhcCCcEEE-EEee
Q 045494 331 FGDIDASMLQLRRGE--TLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVT-LVEQ 383 (492)
Q Consensus 331 ~eel~~~~l~l~~gE--aLaVn~~lh~L~~~~~~~~~~L~~Ir~L~Pkvvv-lvEq 383 (492)
.+++ ...++. +|.+.+.+|.+.+ ....+=...|-|+|.-.+ ++|-
T Consensus 107 a~~l-----p~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 107 AEDL-----PFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp TTB-------S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHh-----cCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeec
Confidence 4443 333332 3444455776544 233344566889997643 4453
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=72.05 E-value=19 Score=36.65 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=64.5
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecc
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAK 329 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~ 329 (492)
..|+|.+.=+.-=||+|+|.| |-+++..+|++.| .++|||..+.+..+.+ .+.++..|++=....+..
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~Q~~~a----~~~~~~~gl~~~v~v~~~ 119 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEEQAEYA----RERIREAGLEDRVEVRLQ 119 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HHHHHHH----HHHHHCSTSSSTEEEEES
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHHHHHHH----HHHHHhcCCCCceEEEEe
Confidence 456666654455589999776 7788999998864 6899999886655443 444556687633333334
Q ss_pred cccccccccccccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEEe
Q 045494 330 KFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLVE 382 (492)
Q Consensus 330 ~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvE 382 (492)
+..+++. .=|-+|.|-++-|. .......+++.+ +-|+|.-..++.
T Consensus 120 D~~~~~~-----~fD~IvSi~~~Ehv---g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 120 DYRDLPG-----KFDRIVSIEMFEHV---GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -GGG--------S-SEEEEESEGGGT---CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred eccccCC-----CCCEEEEEechhhc---ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4444433 11223344445554 112356788877 778999888764
No 42
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=71.76 E-value=9.6 Score=34.46 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=32.5
Q ss_pred hccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHH
Q 045494 256 FHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLET 307 (492)
Q Consensus 256 ~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~et 307 (492)
-...+..+|||||-|.|.-=-.|-..|... .|.++|+||+.+...++..
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~~~~~~a 69 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNESLVESA 69 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCcHHHHHH
Confidence 345789999999999985333333333222 2779999999876554333
No 43
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=71.69 E-value=36 Score=35.51 Aligned_cols=113 Identities=11% Similarity=0.056 Sum_probs=57.6
Q ss_pred HHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccc
Q 045494 251 AILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKK 330 (492)
Q Consensus 251 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~ 330 (492)
++++.+...+.=.|+|+|.+.|. ++..++.+ |+ . +++||+++...+.+. +...+++... -...+ +..+
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~-~-~v~GiDpS~~ml~q~-~~~~~~~~~~-~~v~~--~~~~ 179 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA-K-SLVGIDPTVLFLCQF-EAVRKLLDND-KRAIL--EPLG 179 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC-C-EEEEEcCCHHHHHHH-HHHHHHhccC-CCeEE--EECC
Confidence 35554443333489999999996 34444443 33 2 789999987655432 2222232211 12222 2223
Q ss_pred ccccccccccccCCCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEEe
Q 045494 331 FGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVE 382 (492)
Q Consensus 331 ~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvE 382 (492)
.+++... ..=++|.++..++.+ .++.+.+-..-+.|+|.-.++++
T Consensus 180 ie~lp~~----~~FD~V~s~gvL~H~---~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 180 IEQLHEL----YAFDTVFSMGVLYHR---KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred HHHCCCC----CCcCEEEEcchhhcc---CCHHHHHHHHHHhcCCCCEEEEE
Confidence 3443321 112345555433332 34444444555779999777665
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=70.88 E-value=6 Score=33.13 Aligned_cols=61 Identities=28% Similarity=0.336 Sum_probs=37.9
Q ss_pred EEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccccc
Q 045494 264 IIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDI 334 (492)
Q Consensus 264 IIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel 334 (492)
|+|+|.|.|.-=..|.+.+ .+ + |..++|||+.+.+.++.+.++..+ .+++.+| +..+..++
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~-~~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~--~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--G-PSSRVIGVDISPEMLELAKKRFSE----DGPKVRF--VQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSHH----TTTTSEE--EESCTTCH
T ss_pred CEEeecCCcHHHHHHHHHh-hh--c-ccceEEEEECCHHHHHHHHHhchh----cCCceEE--EECCHhHC
Confidence 7999999998777777766 21 2 569999999998888766655544 4556666 44444443
No 45
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=69.11 E-value=67 Score=30.61 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=30.5
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLF 312 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~ 312 (492)
..-.|+|+|.+.|.- ...|+.+ + .++||++.+...++.+.+++.
T Consensus 63 ~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 63 TGLRILDAGCGVGSL----SIPLARR--G---AKVVASDISPQMVEEARERAP 106 (230)
T ss_pred CCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECCHHHHHHHHHHHH
Confidence 456899999999953 3345543 2 349999998887776666543
No 46
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=68.97 E-value=29 Score=33.16 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=53.7
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccccccccccccc
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLR 342 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~l~ 342 (492)
+|+|+|.+.|. +...++.+. |..++||++.+.+.++.+.+++ +..|+.-....+..+..+.... .
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~~~----~ 66 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPEQAEVGRERI----RALGLQGRIRIFYRDSAKDPFP----D 66 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHH----HhcCCCcceEEEecccccCCCC----C
Confidence 68999998885 344555543 3368999998877666655554 3345543333333333221110 0
Q ss_pred CCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEE
Q 045494 343 RGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLV 381 (492)
Q Consensus 343 ~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~Pkvvvlv 381 (492)
.=+.|+.+.++|.+.+ ...+|+.+ +.|+|.-.+++
T Consensus 67 ~fD~I~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 67 TYDLVFGFEVIHHIKD----KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCCEeehHHHHHhCCC----HHHHHHHHHHHcCCCCEEEE
Confidence 1123333323443322 45666655 66899977655
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=68.95 E-value=1.3 Score=36.95 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=29.1
Q ss_pred EEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHH
Q 045494 265 IDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNF 314 (492)
Q Consensus 265 IDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~f 314 (492)
+|+|.+.|.==..|++.+ |..++||++.+...++.+.+++.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~~~ 43 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLAEL 43 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHHHC
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhhhc
Confidence 478888887666666655 7899999999877775555665543
No 48
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=67.86 E-value=43 Score=32.79 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=58.3
Q ss_pred hhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeee
Q 045494 248 SNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPI 327 (492)
Q Consensus 248 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V 327 (492)
.-..+++.+...+.-.|+|+|.|.|. +.+.|+.+ + -++||++.+.+.++...++.. ...| +
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s~~~l~~a~~~~~--------~~~~--~ 90 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLSPPMLAQARQKDA--------ADHY--L 90 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECCHHHHHHHHhhCC--------CCCE--E
Confidence 34455566654444579999999994 55566654 2 489999988776655443321 1122 2
Q ss_pred cccccccccccccccCC--CeEEEeeccccccCCCCccHHHH-HHHHhcCCcEEEEE
Q 045494 328 AKKFGDIDASMLQLRRG--ETLAVHWLQHSLYDATGPDWKTL-RLLEELSPRVVTLV 381 (492)
Q Consensus 328 ~~~~eel~~~~l~l~~g--EaLaVn~~lh~L~~~~~~~~~~L-~~Ir~L~Pkvvvlv 381 (492)
..+.+++. ..++ +.|+.|..+|... + ...+| +..+-|+|.-.+++
T Consensus 91 ~~d~~~~~-----~~~~~fD~V~s~~~l~~~~---d-~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 91 AGDIESLP-----LATATFDLAWSNLAVQWCG---N-LSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred EcCcccCc-----CCCCcEEEEEECchhhhcC---C-HHHHHHHHHHHcCCCeEEEE
Confidence 23333322 2222 3455565555322 2 34455 45578899765554
No 49
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=66.45 E-value=43 Score=35.27 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=66.1
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecc
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAK 329 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~ 329 (492)
..+++.+.....=+|+|+|.|.|. +-..|+.+. |..++|+|+.+...++.+.+++.. .++..+|.. .
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~Al~~A~~nl~~----n~l~~~~~~--~ 252 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAAALESSRATLAA----NGLEGEVFA--S 252 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHH----cCCCCEEEE--c
Confidence 455565553333379999999997 344455442 457899999998888777766644 355555432 2
Q ss_pred cccccccccccccCCCeEEEeeccccccCC-CCccHHHHH-HHHhcCCcEEEEEe
Q 045494 330 KFGDIDASMLQLRRGETLAVHWLQHSLYDA-TGPDWKTLR-LLEELSPRVVTLVE 382 (492)
Q Consensus 330 ~~eel~~~~l~l~~gEaLaVn~~lh~L~~~-~~~~~~~L~-~Ir~L~PkvvvlvE 382 (492)
+..+ .+ -.+=+.|++|..+|...+. ....+.+++ ..+.|+|.-..++-
T Consensus 253 D~~~----~~-~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 253 NVFS----DI-KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cccc----cc-CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 2111 01 1122567788766643222 122344554 34668997766543
No 50
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=66.41 E-value=92 Score=29.88 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=56.9
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeecccccccccccc
Q 045494 261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIAKKFGDIDASML 339 (492)
Q Consensus 261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~~~~eel~~~~l 339 (492)
.-.|+|+|.+.|. .++. ++.+. |..++|+|+.+.+.++.+.++ ++..|++ ++| +..+.+++..
T Consensus 46 g~~VLDiGcGtG~--~al~--la~~~---~~~~V~giD~s~~~l~~A~~~----~~~~~l~~i~~--~~~d~~~~~~--- 109 (187)
T PRK00107 46 GERVLDVGSGAGF--PGIP--LAIAR---PELKVTLVDSLGKKIAFLREV----AAELGLKNVTV--VHGRAEEFGQ--- 109 (187)
T ss_pred CCeEEEEcCCCCH--HHHH--HHHHC---CCCeEEEEeCcHHHHHHHHHH----HHHcCCCCEEE--EeccHhhCCC---
Confidence 3468999999994 2332 22221 346999999987766655443 4445664 444 3334444322
Q ss_pred cccCCCeEEEeeccccccCCCCccHHHHHH-HHhcCCcEEEEEee
Q 045494 340 QLRRGETLAVHWLQHSLYDATGPDWKTLRL-LEELSPRVVTLVEQ 383 (492)
Q Consensus 340 ~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~-Ir~L~PkvvvlvEq 383 (492)
-.+-+.|.+|.. ...+.+++. .+.|+|.-.+++..
T Consensus 110 -~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 110 -EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred -CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 112345555531 234567765 58999998888764
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=65.81 E-value=44 Score=35.67 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=58.1
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecc
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAK 329 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~ 329 (492)
..|++.+.-...=+|+|+|.|.|. +...++.+.+ .++|||+.+.+.++.+.++.. ++.++|. ..
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~~~l~~A~~~~~------~l~v~~~--~~ 220 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISAEQQKLAQERCA------GLPVEIR--LQ 220 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCHHHHHHHHHHhc------cCeEEEE--EC
Confidence 345555443344589999987774 4455565543 489999998877776665542 3333332 22
Q ss_pred cccccccccccccCCCeEEEeeccccccCCCCccHHHHHH-HHhcCCcEEEEEe
Q 045494 330 KFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRL-LEELSPRVVTLVE 382 (492)
Q Consensus 330 ~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~-Ir~L~PkvvvlvE 382 (492)
+..+++ . .=+.|+.+.+++.+.. ...+.+++. -+-|+|.-.+++.
T Consensus 221 D~~~l~-~-----~fD~Ivs~~~~ehvg~--~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 221 DYRDLN-G-----QFDRIVSVGMFEHVGP--KNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred chhhcC-C-----CCCEEEEeCchhhCCh--HHHHHHHHHHHHHcCCCcEEEEE
Confidence 222221 0 1123433323332211 123455554 4778998877663
No 52
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=65.12 E-value=47 Score=25.74 Aligned_cols=102 Identities=22% Similarity=0.142 Sum_probs=50.3
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccccccccccccc
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLR 342 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~l~ 342 (492)
.|+|+|.+.|. +...++. .+..++++++.+...+....+. ......-+..| +..+..+... ....
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~--~~~~ 65 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDISPVALELARKA---AAALLADNVEV--LKGDAEELPP--EADE 65 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCCHHHHHHHHHH---HhcccccceEE--EEcChhhhcc--ccCC
Confidence 37899988884 4555554 2457999999876655444331 11111122333 3333333211 1111
Q ss_pred CCCeEEEeeccccccCCCCccHHHHHH-HHhcCCcEEEEEe
Q 045494 343 RGETLAVHWLQHSLYDATGPDWKTLRL-LEELSPRVVTLVE 382 (492)
Q Consensus 343 ~gEaLaVn~~lh~L~~~~~~~~~~L~~-Ir~L~PkvvvlvE 382 (492)
.-+.+.++..++.. ......+++. .+.++|.-.+++.
T Consensus 66 ~~d~i~~~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 66 SFDVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceEEEEEccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 11345555443332 2234455554 4567888777653
No 53
>PRK06922 hypothetical protein; Provisional
Probab=64.62 E-value=25 Score=40.50 Aligned_cols=104 Identities=19% Similarity=0.255 Sum_probs=59.1
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccccccccccc
Q 045494 262 VHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQL 341 (492)
Q Consensus 262 VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~l 341 (492)
-.|+|+|.|.|. +...|+.+. |..++|||+.+...++.+.+++. ..+.+++| +..+..++. .. +
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~MLe~Ararl~----~~g~~ie~--I~gDa~dLp-~~--f 483 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISENVIDTLKKKKQ----NEGRSWNV--IKGDAINLS-SS--F 483 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhh----hcCCCeEE--EEcchHhCc-cc--c
Confidence 479999999984 445566552 45899999999887877665532 23444443 333332221 00 2
Q ss_pred cCC--CeEEEeeccccccCC---------CCccHHHHHH-HHhcCCcEEEEE
Q 045494 342 RRG--ETLAVHWLQHSLYDA---------TGPDWKTLRL-LEELSPRVVTLV 381 (492)
Q Consensus 342 ~~g--EaLaVn~~lh~L~~~---------~~~~~~~L~~-Ir~L~Pkvvvlv 381 (492)
.++ +.++.|+.+|.+.+. ......+|+. .+.|+|.-.+++
T Consensus 484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 222 345556666654321 0123455654 488999755544
No 54
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=64.20 E-value=30 Score=34.91 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=43.5
Q ss_pred hcCCccchhh-hhhhHHHHh----hhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHH
Q 045494 236 NVSPFIKFAH-FTSNQAILE----AFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQ 310 (492)
Q Consensus 236 e~sP~~kfa~-ftANqAILE----A~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~r 310 (492)
...|=-+++. |..|+.|++ .+.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|||+.+.+.++.+.++
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEECCHHHHHHHHHh
Confidence 4455556665 666665554 3333455689999999884 55666666 32 899999887766555443
Q ss_pred H
Q 045494 311 L 311 (492)
Q Consensus 311 L 311 (492)
+
T Consensus 84 ~ 84 (272)
T PRK00274 84 F 84 (272)
T ss_pred h
Confidence 3
No 55
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=63.58 E-value=74 Score=33.73 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=59.0
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeecccccccccccccc
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIAKKFGDIDASMLQL 341 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~~~~eel~~~~l~l 341 (492)
.|+|++.|.|. +--.||.+ + -+++||+.+.+.++.+.+++ +..|+. .+| +..+.+++... + .
T Consensus 236 ~vLDL~cG~G~----~~l~la~~--~---~~v~~vE~~~~av~~a~~N~----~~~~~~~~~~--~~~d~~~~~~~-~-~ 298 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP--D---TQLTGIEIESEAIACAQQSA----QMLGLDNLSF--AALDSAKFATA-Q-M 298 (374)
T ss_pred EEEEccCCccH----HHHHHhhc--C---CeEEEEECCHHHHHHHHHHH----HHcCCCcEEE--EECCHHHHHHh-c-C
Confidence 68999998882 33344433 2 37999999888777666554 344553 444 33333332111 1 0
Q ss_pred cCCCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEEee
Q 045494 342 RRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQ 383 (492)
Q Consensus 342 ~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvEq 383 (492)
..-++|++|=. ..+....++..|..++|+-+|.++-
T Consensus 299 ~~~D~vi~DPP------r~G~~~~~l~~l~~~~p~~ivyvsc 334 (374)
T TIGR02085 299 SAPELVLVNPP------RRGIGKELCDYLSQMAPKFILYSSC 334 (374)
T ss_pred CCCCEEEECCC------CCCCcHHHHHHHHhcCCCeEEEEEe
Confidence 12246666621 1244567889999999998888773
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=63.41 E-value=70 Score=30.32 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=53.9
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeecccccccccccc
Q 045494 261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIAKKFGDIDASML 339 (492)
Q Consensus 261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~~~~eel~~~~l 339 (492)
.-+|+|+|.|.|. .++.=+.. . |..++|||+.+...++.+.+ .+++.|++ ++| +..+.+++..
T Consensus 43 ~~~vLDiGcGtG~--~s~~la~~-~----~~~~V~~iD~s~~~~~~a~~----~~~~~~~~~i~~--i~~d~~~~~~--- 106 (181)
T TIGR00138 43 GKKVIDIGSGAGF--PGIPLAIA-R----PELKLTLLESNHKKVAFLRE----VKAELGLNNVEI--VNGRAEDFQH--- 106 (181)
T ss_pred CCeEEEecCCCCc--cHHHHHHH-C----CCCeEEEEeCcHHHHHHHHH----HHHHhCCCCeEE--Eecchhhccc---
Confidence 3489999999993 22221221 1 34689999998776654433 34455664 444 4444444311
Q ss_pred cccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEEee
Q 045494 340 QLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLVEQ 383 (492)
Q Consensus 340 ~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvEq 383 (492)
..+=+.|.++. ++ ..+.++..+ +-|+|.-.+++..
T Consensus 107 -~~~fD~I~s~~-~~-------~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 -EEQFDVITSRA-LA-------SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -cCCccEEEehh-hh-------CHHHHHHHHHHhcCCCCEEEEEc
Confidence 01113454554 22 133455554 5589998888763
No 57
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=62.86 E-value=71 Score=33.11 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=67.0
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecc
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAK 329 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~ 329 (492)
..|++-+.=+.--||+|+|.| |-+|+...|.+-+ .++|||..|.+-+....++ ++..|++=..+.+..
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS~~Q~~~~~~r----~~~~gl~~~v~v~l~ 129 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLSEEQLAYAEKR----IAARGLEDNVEVRLQ 129 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCCHHHHHHHHHH----HHHcCCCcccEEEec
Confidence 344444444677899999654 8899999999875 7999999987766554444 445566633333444
Q ss_pred cccccccccccccCCCeEEEeeccccccCCCCccHHHHHHHHh-cCCcEEEE
Q 045494 330 KFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEE-LSPRVVTL 380 (492)
Q Consensus 330 ~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~-L~Pkvvvl 380 (492)
+..++... + |-.|.|=.+-|.=. ..-+.+++.+++ |+|.-..+
T Consensus 130 d~rd~~e~-f----DrIvSvgmfEhvg~---~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 130 DYRDFEEP-F----DRIVSVGMFEHVGK---ENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred cccccccc-c----ceeeehhhHHHhCc---ccHHHHHHHHHhhcCCCceEE
Confidence 55555433 1 22344444444311 235678887754 56655443
No 58
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=62.82 E-value=1.4e+02 Score=28.29 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=74.8
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCC-ceEEeeeccccccccccc
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGL-SFEFHPIAKKFGDIDASM 338 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgv-pFeF~~V~~~~eel~~~~ 338 (492)
....|+|+|.+.|. +...++.. + .++|+++.+...+..+.+++.. .++ .+.|. ..+..++....
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~~--~~d~~~~~~~~ 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASEENIEVAKLHAKK----DPLLKIEYR--CTSVEDLAEKG 109 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCHHHHHHHHHHHHH----cCCCceEEE--eCCHHHhhcCC
Confidence 35689999999884 33344432 2 2499999887776666555442 344 34442 22222221110
Q ss_pred ccccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCc
Q 045494 339 LQLRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYREINNILAIGGPAR 417 (492)
Q Consensus 339 l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvEqea~hnsd~~eR~~iE~~~lgreI~NiVAcEG~~R 417 (492)
-.+-+.|+++..+|... ....+|+.+ +.|+|.-++++.- .+ .+... .....+-+.-+.+.+. ++..+
T Consensus 110 --~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~~gG~l~i~~-~~--~~~~~--~~~~~~~~~~~~~~~~-~~~~~ 177 (224)
T TIGR01983 110 --AKSFDVVTCMEVLEHVP----DPQAFIRACAQLLKPGGILFFST-IN--RTPKS--YLLAIVGAEYILRIVP-KGTHD 177 (224)
T ss_pred --CCCccEEEehhHHHhCC----CHHHHHHHHHHhcCCCcEEEEEe-cC--CCchH--HHHHHHhhhhhhhcCC-CCcCC
Confidence 01224455554444332 234565544 6788987665531 11 11111 1111111112222222 22222
Q ss_pred -ccccchhhHHHHHhccCCCeeccC
Q 045494 418 -SGEDKFKHWRSELARCNGFAQVPM 441 (492)
Q Consensus 418 -~rhE~~~~Wr~rm~~~AGF~~v~l 441 (492)
.+--+...|.+.|.. +||+.+.+
T Consensus 178 ~~~~~~~~~l~~~l~~-~G~~i~~~ 201 (224)
T TIGR01983 178 WEKFIKPSELTSWLES-AGLRVKDV 201 (224)
T ss_pred hhhcCCHHHHHHHHHH-cCCeeeee
Confidence 111234578888888 99998765
No 59
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=61.83 E-value=62 Score=33.91 Aligned_cols=125 Identities=15% Similarity=0.103 Sum_probs=76.2
Q ss_pred HHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeecc
Q 045494 251 AILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIAK 329 (492)
Q Consensus 251 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~~ 329 (492)
.|..++. ....|||||.|.|..=..||++|..+ +. ..+-.+|+-+.+.|+++.++|. .-..| +++++|..
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS~~~L~~a~~~L~----~~~~p~l~v~~l~g 139 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVSRSELQRTLAELP----LGNFSHVRCAGLLG 139 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECCHHHHHHHHHhhh----hccCCCeEEEEEEe
Confidence 3444443 23479999999999999999999732 22 3678999999999999999997 12345 78888876
Q ss_pred cccc-cc-cccccccCCCeEEEeeccccccCCCCc--cHHHHHHHHh--cCCcEEEEEeecCC
Q 045494 330 KFGD-ID-ASMLQLRRGETLAVHWLQHSLYDATGP--DWKTLRLLEE--LSPRVVTLVEQEIS 386 (492)
Q Consensus 330 ~~ee-l~-~~~l~l~~gEaLaVn~~lh~L~~~~~~--~~~~L~~Ir~--L~PkvvvlvEqea~ 386 (492)
+..+ +. ... ...++...+|-|+ -.-+..-.+ ...||+.+++ |+|.-..++=-|..
T Consensus 140 dy~~~l~~l~~-~~~~~~~r~~~fl-GSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 140 TYDDGLAWLKR-PENRSRPTTILWL-GSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred cHHHHHhhccc-ccccCCccEEEEe-CccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 5544 21 000 0001222233322 111111122 3468999987 88976666644443
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=60.96 E-value=1.4e+02 Score=27.64 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=30.8
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLF 312 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~ 312 (492)
.|+|+|.+.|. +...++.+ ++ ++|+++.+.+.++.+.+++.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~ 62 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDINPFAVKELRENAK 62 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECCHHHHHHHHHHHH
Confidence 49999999994 45556654 33 89999998888877777664
No 61
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=60.62 E-value=26 Score=35.39 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=65.8
Q ss_pred hccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccccc
Q 045494 256 FHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDID 335 (492)
Q Consensus 256 ~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~ 335 (492)
+.-+.---|+|+|.|-|.+=- -|+.|- |-=.||||+++.+.|.++.+|| ....|.. .++.+.+
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTe----lL~~Rw---P~A~i~GiDsS~~Mla~Aa~rl--------p~~~f~~--aDl~~w~ 88 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTE----LLARRW---PDAVITGIDSSPAMLAKAAQRL--------PDATFEE--ADLRTWK 88 (257)
T ss_pred CCccccceeeecCCCCCHHHH----HHHHhC---CCCeEeeccCCHHHHHHHHHhC--------CCCceec--ccHhhcC
Confidence 334455678999999997643 345564 4468999999988887765554 3333421 1111111
Q ss_pred cccccccCCCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEEeecCCC
Q 045494 336 ASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVEQEISH 387 (492)
Q Consensus 336 ~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvEqea~h 387 (492)
++ .+-..|.-|..+|-|.+. .+.+-+.+-.|.|.-+.-|-.-.|+
T Consensus 89 p~----~~~dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 89 PE----QPTDLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred CC----Cccchhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCcc
Confidence 11 111234457667766553 3456678889999998877655554
No 62
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=59.48 E-value=1.1e+02 Score=31.81 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccc
Q 045494 252 ILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKF 331 (492)
Q Consensus 252 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~ 331 (492)
|++.+..-+--+|+|+|.|.|.. +..++.+ |+- +++||+++...+.+. +...+++.. ..+.+|.. .+.
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~~--~V~GiD~S~~~l~q~-~a~~~~~~~-~~~i~~~~--~d~ 181 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GAK--LVVGIDPSQLFLCQF-EAVRKLLGN-DQRAHLLP--LGI 181 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CCC--EEEEEcCCHHHHHHH-HHHHHhcCC-CCCeEEEe--CCH
Confidence 34444322224799999999853 2344544 322 499999886544321 111222211 22344432 233
Q ss_pred cccccccccccCCCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEEe
Q 045494 332 GDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVE 382 (492)
Q Consensus 332 eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvE 382 (492)
+++.. -..=++|..+..+|+. .++...+-..-+.|+|.-.++.|
T Consensus 182 e~lp~----~~~FD~V~s~~vl~H~---~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 182 EQLPA----LKAFDTVFSMGVLYHR---RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHCCC----cCCcCEEEECChhhcc---CCHHHHHHHHHHhcCCCcEEEEE
Confidence 33321 0111344444334332 23444445566889999777765
No 63
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=57.48 E-value=1e+02 Score=29.51 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 045494 251 AILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLF 312 (492)
Q Consensus 251 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~ 312 (492)
.+++++.-...-+|+|+|.|.|..=..|.+.+ . +.-++++|+.+.+.++.+.+++.
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-~-----~~g~V~~iD~~~~~~~~a~~~l~ 118 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-E-----RRGKVYTVEIVKELAIYAAQNIE 118 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-C-----CCCEEEEEeCCHHHHHHHHHHHH
Confidence 35566654444579999999887544444433 1 11379999998877777766664
No 64
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=57.47 E-value=57 Score=35.03 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=59.8
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccc-cccccccccc
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKF-GDIDASMLQL 341 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~-eel~~~~l~l 341 (492)
.|+|+|.|.|. +--.|+.+. |..++|+|+.+...++.+.+++......-.-.++|. ..+. .++...
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~---- 297 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEPF---- 297 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCCC----
Confidence 79999999997 333455442 568999999998888777776643321100134443 2221 111111
Q ss_pred cCCCeEEEeeccccccCCCC-ccHHHHH-HHHhcCCcEEEEEee
Q 045494 342 RRGETLAVHWLQHSLYDATG-PDWKTLR-LLEELSPRVVTLVEQ 383 (492)
Q Consensus 342 ~~gEaLaVn~~lh~L~~~~~-~~~~~L~-~Ir~L~PkvvvlvEq 383 (492)
.=+.|++|-..|.....+. ....+++ .-+.|+|.-.+.++.
T Consensus 298 -~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 -RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1245777865554322111 1234443 446788888777663
No 65
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=55.17 E-value=1.8e+02 Score=28.16 Aligned_cols=106 Identities=18% Similarity=0.065 Sum_probs=58.4
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccccccccccc
Q 045494 262 VHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQL 341 (492)
Q Consensus 262 VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~l 341 (492)
-.|+|++.|.|. --+.+|+.. . -++|+|+.+.+.++.+.+++. ..|+. ....+..+..+.-.. . -
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~---a--~~V~~vE~~~~a~~~a~~Nl~----~~~~~-~v~~~~~D~~~~l~~-~-~ 119 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRY---A--AGATLLEMDRAVAQQLIKNLA----TLKAG-NARVVNTNALSFLAQ-P-G 119 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcC---C--CEEEEEECCHHHHHHHHHHHH----HhCCC-cEEEEEchHHHHHhh-c-C
Confidence 368999999883 223455532 1 389999988776665555443 33442 122233333221010 0 0
Q ss_pred cCCCeEEEeeccccccCCCCccHHHHHHHHh---cCCcEEEEEeecCCC
Q 045494 342 RRGETLAVHWLQHSLYDATGPDWKTLRLLEE---LSPRVVTLVEQEISH 387 (492)
Q Consensus 342 ~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~---L~PkvvvlvEqea~h 387 (492)
.+=+.|++|=..+ .+-.+.++..|.. |.|+-+|++|.....
T Consensus 120 ~~fDlV~~DPPy~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 120 TPHNVVFVDPPFR-----KGLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred CCceEEEECCCCC-----CChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 1123455552211 1334567888877 699999999976643
No 66
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=53.75 E-value=1.4e+02 Score=30.73 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=59.2
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeecccccccccccc
Q 045494 261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIAKKFGDIDASML 339 (492)
Q Consensus 261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~~~~eel~~~~l 339 (492)
.-+|+|++.|.|. +--.||.+ + -+++||+.+.+.++.+.++. +..|++ .+|. ..+..++... .
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s~~av~~A~~n~----~~~~l~~v~~~--~~D~~~~~~~-~ 237 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP-G----MQLTGIEISAEAIACAKQSA----AELGLTNVQFQ--ALDSTQFATA-Q 237 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCCHHHHHHHHHHH----HHcCCCceEEE--EcCHHHHHHh-c
Confidence 3579999999985 33445543 2 38999999888776665443 445663 5553 3333332211 0
Q ss_pred cccCCCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEEe
Q 045494 340 QLRRGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVE 382 (492)
Q Consensus 340 ~l~~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvE 382 (492)
...-+.|++|=. ..+-...++..+.+++|+-+|.+.
T Consensus 238 -~~~~D~Vv~dPP------r~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 238 -GEVPDLVLVNPP------RRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred -CCCCeEEEECCC------CCCccHHHHHHHHHcCCCeEEEEE
Confidence 011245666611 123345678889999999888766
No 67
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=51.32 E-value=40 Score=28.38 Aligned_cols=44 Identities=16% Similarity=0.036 Sum_probs=29.9
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFN 313 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~ 313 (492)
+|+|+|.+.|.. ...|+.+. |..++|+++.+...++.+.+++..
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~~ 65 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERNPEALRLIERNARR 65 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCCHHHHHHHHHHHHH
Confidence 899999998754 33334442 237899999987777666555443
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=51.15 E-value=1.6e+02 Score=29.91 Aligned_cols=121 Identities=11% Similarity=0.064 Sum_probs=64.0
Q ss_pred cCCccchh--hhhhhHHHHhhhcc--CceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 045494 237 VSPFIKFA--HFTSNQAILEAFHR--RDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLF 312 (492)
Q Consensus 237 ~sP~~kfa--~ftANqAILEA~~g--~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~ 312 (492)
+-|-.-|+ +..+.+..+++++. ...-.|+|+|.|.|. |..+++.. + + -+++||+.+...++.+.+++.
T Consensus 132 ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~-g-~--~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 132 LDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL-G-A--AKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred ECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc-C-C--CeEEEEECCHHHHHHHHHHHH
Confidence 34444442 34455555665542 234579999999984 33444443 2 2 389999998888877766543
Q ss_pred HHHHHhCCceEEeeecccccccccccccccCCCeEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEEE
Q 045494 313 NFAKRLGLSFEFHPIAKKFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTLV 381 (492)
Q Consensus 313 ~fA~slgvpFeF~~V~~~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~Pkvvvlv 381 (492)
..++...+..+..+.... .-.+=+.|+.|.+.+. ...++. ..+.|+|.-.++.
T Consensus 204 ----~n~~~~~~~~~~~~~~~~-----~~~~fDlVvan~~~~~-------l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 204 ----LNQVSDRLQVKLIYLEQP-----IEGKADVIVANILAEV-------IKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred ----HcCCCcceEEEecccccc-----cCCCceEEEEecCHHH-------HHHHHHHHHHHcCCCcEEEE
Confidence 345543332222211110 0011135556754322 233443 4578899866654
No 69
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=50.64 E-value=26 Score=34.21 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=38.4
Q ss_pred hhhccCceeEEEEccccCc---cchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHH
Q 045494 254 EAFHRRDRVHIIDLDIMQG---LQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFA 315 (492)
Q Consensus 254 EA~~g~~~VHIIDfgI~~G---~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA 315 (492)
-+++=.+.=|++|+|.+.| .+|. ++ .|+.|+++|+.+.+.++.+.+++.+|.
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 3444344449999999887 5776 22 278999999998888888888877664
No 70
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=49.85 E-value=1e+02 Score=30.46 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHH
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQ 310 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~r 310 (492)
+.|++++...+.=.|+|+|.|.|. |...|+.+. + ++++|+.+.+.++.+.++
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECCHHHHHHHHHH
Confidence 345555544455689999999997 555566553 2 399999887655544433
No 71
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=49.73 E-value=32 Score=25.19 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=24.8
Q ss_pred CeEEEeeccccc-cCCCCccHHHHHHHHhcCCcEEEEE
Q 045494 345 ETLAVHWLQHSL-YDATGPDWKTLRLLEELSPRVVTLV 381 (492)
Q Consensus 345 EaLaVn~~lh~L-~~~~~~~~~~L~~Ir~L~Pkvvvlv 381 (492)
|.+-|||-.+.+ +......+.++.+|+.++|+-+++|
T Consensus 1 e~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 456677632222 3455678899999999999999987
No 72
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=48.77 E-value=1.2e+02 Score=30.70 Aligned_cols=124 Identities=17% Similarity=0.227 Sum_probs=77.3
Q ss_pred cCCccchh-hhhhhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHH
Q 045494 237 VSPFIKFA-HFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFA 315 (492)
Q Consensus 237 ~sP~~kfa-~ftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA 315 (492)
..+++.|+ |.+=+++..+.+.-.+--+|+|.+.|-|-. .- .|+...+ .-+|||++.+...|....+++.+.
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~-a~---~~~k~~g---~g~v~~~D~s~~ML~~a~~k~~~~- 98 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDM-AL---LLAKSVG---TGEVVGLDISESMLEVAREKLKKK- 98 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHH-HH---HHHHhcC---CceEEEEECCHHHHHHHHHHhhcc-
Confidence 34555665 356666666666544788999999988842 22 3333333 789999999988888777776542
Q ss_pred HHhCCc-eEEeeecccccccccccccccCC--CeEEEeeccccccCCCCccHHHHH-HHHhcCCcEEEEEe
Q 045494 316 KRLGLS-FEFHPIAKKFGDIDASMLQLRRG--ETLAVHWLQHSLYDATGPDWKTLR-LLEELSPRVVTLVE 382 (492)
Q Consensus 316 ~slgvp-FeF~~V~~~~eel~~~~l~l~~g--EaLaVn~~lh~L~~~~~~~~~~L~-~Ir~L~PkvvvlvE 382 (492)
|+. ++| |..+.++|.. .+. .++.+.+-+|.+.+ .+.+|+ +-|=|+|...++|-
T Consensus 99 ---~~~~i~f--v~~dAe~LPf-----~D~sFD~vt~~fglrnv~d----~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 99 ---GVQNVEF--VVGDAENLPF-----PDNSFDAVTISFGLRNVTD----IDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred ---CccceEE--EEechhhCCC-----CCCccCEEEeeehhhcCCC----HHHHHHHHHHhhcCCeEEEEE
Confidence 332 334 4455555432 222 34666666776544 455664 45778999866653
No 73
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=47.38 E-value=61 Score=32.88 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=60.2
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccccccccc
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASML 339 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l 339 (492)
...-|+|+|.|-| .|-+.||.. | ..+|||+.+...++.+ ...|.+-|+..+|.... .+++....
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se~~I~~A----k~ha~e~gv~i~y~~~~--~edl~~~~- 122 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASEKPIEVA----KLHALESGVNIDYRQAT--VEDLASAG- 122 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCChHHHHHH----HHhhhhccccccchhhh--HHHHHhcC-
Confidence 4567899999988 788888854 3 8999999876655443 23566778888887654 34432221
Q ss_pred cccCCCeEEEee-ccccccCCCCccHHHHHHHHhcCCcEEEEE
Q 045494 340 QLRRGETLAVHW-LQHSLYDATGPDWKTLRLLEELSPRVVTLV 381 (492)
Q Consensus 340 ~l~~gEaLaVn~-~lh~L~~~~~~~~~~L~~Ir~L~Pkvvvlv 381 (492)
..=+ |++++ +++++ +.|..-+....+-++|.-+++.
T Consensus 123 --~~FD-vV~cmEVlEHv---~dp~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 123 --GQFD-VVTCMEVLEHV---PDPESFLRACAKLVKPGGILFL 159 (243)
T ss_pred --CCcc-EEEEhhHHHcc---CCHHHHHHHHHHHcCCCcEEEE
Confidence 0112 23332 34433 2344433445577889876653
No 74
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=47.17 E-value=1.9e+02 Score=31.35 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=58.4
Q ss_pred CceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeecccccccccc
Q 045494 259 RDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIAKKFGDIDAS 337 (492)
Q Consensus 259 ~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~~~~eel~~~ 337 (492)
.+.-+|+|+|.|.|. +--.||.+. -+++||+.+.+.++.+.+++. ..|+. .+|. ..+..+...
T Consensus 296 ~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~al~~A~~n~~----~~~~~~v~~~--~~d~~~~l~- 359 (443)
T PRK13168 296 QPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEAMVERARENAR----RNGLDNVTFY--HANLEEDFT- 359 (443)
T ss_pred CCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHH----HcCCCceEEE--EeChHHhhh-
Confidence 344689999999995 333456542 389999999888877665543 33542 4442 333322110
Q ss_pred ccccc--CCCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEEe
Q 045494 338 MLQLR--RGETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVE 382 (492)
Q Consensus 338 ~l~l~--~gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvE 382 (492)
.+... .-+.|++|=. ..+ ...++..+.+++|+-+|.+.
T Consensus 360 ~~~~~~~~fD~Vi~dPP------r~g-~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 360 DQPWALGGFDKVLLDPP------RAG-AAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred hhhhhcCCCCEEEECcC------CcC-hHHHHHHHHhcCCCeEEEEE
Confidence 01111 1134545421 111 34677899999999998876
No 75
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=46.89 E-value=3.7e+02 Score=28.32 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=87.5
Q ss_pred ccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc--eEEeeeccccccc
Q 045494 257 HRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS--FEFHPIAKKFGDI 334 (492)
Q Consensus 257 ~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp--FeF~~V~~~~eel 334 (492)
+..+.|||+|+-.++|. -++++|..-+..|-++++- +-+...+ +.|+.|+ ++.|+. ++|..-. .+
T Consensus 132 ~~g~pvrIlDIAaG~GR---YvlDal~~~~~~~~~i~Lr--Dys~~Nv-~~g~~li---~~~gL~~i~~f~~~d----Af 198 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGR---YVLDALEKHPERPDSILLR--DYSPINV-EKGRALI---AERGLEDIARFEQGD----AF 198 (311)
T ss_pred hcCCceEEEEeccCCcH---HHHHHHHhCCCCCceEEEE--eCCHHHH-HHHHHHH---HHcCCccceEEEecC----CC
Confidence 34689999999999995 4999999888776555444 4454444 3466554 444552 3554322 13
Q ss_pred cccccc-ccCCCeEEEeeccccccCCCCccHHHHHHH-HhcCCcEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 045494 335 DASMLQ-LRRGETLAVHWLQHSLYDATGPDWKTLRLL-EELSPRVVTLVEQEISHGGDDPNRHRVEHCLLYREINNILAI 412 (492)
Q Consensus 335 ~~~~l~-l~~gEaLaVn~~lh~L~~~~~~~~~~L~~I-r~L~PkvvvlvEqea~hnsd~~eR~~iE~~~lgreI~NiVAc 412 (492)
+.+++. +.|--.|+|.+=++-+++...-....|.-+ ..+.|.-.++.=.--.|. .+|. |..++..
T Consensus 199 d~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP-------Qle~------IAr~Lts 265 (311)
T PF12147_consen 199 DRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP-------QLEM------IARVLTS 265 (311)
T ss_pred CHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc-------chHH------HHHHHhc
Confidence 333332 334435666654555555433234445555 448888877765444553 2232 5666654
Q ss_pred --cCCCc-ccc---cchhhHHHHHhccCCCeecc
Q 045494 413 --GGPAR-SGE---DKFKHWRSELARCNGFAQVP 440 (492)
Q Consensus 413 --EG~~R-~rh---E~~~~Wr~rm~~~AGF~~v~ 440 (492)
+|..- -|+ ..+++| ++. |||+.+.
T Consensus 266 Hr~g~~WvMRrRsq~EmD~L---v~~-aGF~K~~ 295 (311)
T PF12147_consen 266 HRDGKAWVMRRRSQAEMDQL---VEA-AGFEKID 295 (311)
T ss_pred ccCCCceEEEecCHHHHHHH---HHH-cCCchhh
Confidence 56544 232 345555 445 9998543
No 76
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=45.93 E-value=1.8e+02 Score=29.04 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=35.9
Q ss_pred hhhhHHHHhhhc----cCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHH
Q 045494 246 FTSNQAILEAFH----RRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQL 311 (492)
Q Consensus 246 ftANqAILEA~~----g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL 311 (492)
|..++.+++.+. -.+.=.|+|+|.|.|. |...|+.+ + .++|||+.+...++...+++
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~-~----~~v~~vEid~~~~~~l~~~~ 71 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA----LTDELAKR-A----KKVYAIELDPRLAEFLRDDE 71 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCH----HHHHHHHh-C----CEEEEEECCHHHHHHHHHHh
Confidence 444554444443 2344579999999986 44445555 2 27999998877666555554
No 77
>PRK04148 hypothetical protein; Provisional
Probab=45.92 E-value=70 Score=29.52 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=26.8
Q ss_pred HHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHH
Q 045494 252 ILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSME 302 (492)
Q Consensus 252 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~ 302 (492)
|.+.....+.-.|+|.|+|+|+.=. +.|++. | ..+|+|+.+..
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA---~~L~~~-G----~~ViaIDi~~~ 50 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVA---KKLKES-G----FDVIVIDINEK 50 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHH---HHHHHC-C----CEEEEEECCHH
Confidence 4555555455679999999885443 344432 2 47888876544
No 78
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=41.10 E-value=1.9e+02 Score=27.36 Aligned_cols=109 Identities=13% Similarity=0.166 Sum_probs=56.8
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccccccccccccc
Q 045494 261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQ 340 (492)
Q Consensus 261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~ 340 (492)
.--|+|+|.|.|.= +-.||.+. |...++||+.+.+.++.+.+++. ..|+. ....+..+..++....
T Consensus 17 ~~~ilDiGcG~G~~----~~~la~~~---p~~~v~gvD~~~~~l~~a~~~~~----~~~l~-ni~~i~~d~~~~~~~~-- 82 (194)
T TIGR00091 17 APLHLEIGCGKGRF----LIDMAKQN---PDKNFLGIEIHTPIVLAANNKAN----KLGLK-NLHVLCGDANELLDKF-- 82 (194)
T ss_pred CceEEEeCCCccHH----HHHHHHhC---CCCCEEEEEeeHHHHHHHHHHHH----HhCCC-CEEEEccCHHHHHHhh--
Confidence 34699999998854 33444442 45789999998877766655553 34553 2233444443321111
Q ss_pred ccCC--CeEEEeeccccccCCC----CccHHHHHHH-HhcCCcEEEEEee
Q 045494 341 LRRG--ETLAVHWLQHSLYDAT----GPDWKTLRLL-EELSPRVVTLVEQ 383 (492)
Q Consensus 341 l~~g--EaLaVn~~lh~L~~~~----~~~~~~L~~I-r~L~PkvvvlvEq 383 (492)
..++ +.|.+|+..+-..... -..+.+|+.+ +.|+|.-.+.+..
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 1111 2344554211000000 0124567654 6778888776653
No 79
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=40.84 E-value=34 Score=35.01 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=21.7
Q ss_pred ccCceeEEEEccccCccchHHHHHHHhc
Q 045494 257 HRRDRVHIIDLDIMQGLQWPALFHILAT 284 (492)
Q Consensus 257 ~g~~~VHIIDfgI~~G~QWpsLiqaLA~ 284 (492)
.|.+.+||||+|-+.+.+ -.+|.+++.
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999999877777 556777776
No 80
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=40.66 E-value=1.3e+02 Score=30.00 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=29.8
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHH
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGK 309 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~ 309 (492)
..-+|+|+|.|.|.--..|.+.+... ....++||+.+...++.+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~~l~~A~~ 130 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKVAIKYAAK 130 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHHHHHHHHH
Confidence 44579999999997444444433211 12579999998776665443
No 81
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=40.20 E-value=1.3e+02 Score=30.52 Aligned_cols=49 Identities=27% Similarity=0.296 Sum_probs=33.2
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc
Q 045494 262 VHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS 321 (492)
Q Consensus 262 VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp 321 (492)
.+|+|+|.|.|.--.+| +... |..++||++.+.+.++.+.++ ++..++.
T Consensus 116 ~~vLDlG~GsG~i~l~l----a~~~---~~~~v~avDis~~al~~a~~n----~~~~~~~ 164 (284)
T TIGR00536 116 LHILDLGTGSGCIALAL----AYEF---PNAEVIAVDISPDALAVAEEN----AEKNQLE 164 (284)
T ss_pred CEEEEEeccHhHHHHHH----HHHC---CCCEEEEEECCHHHHHHHHHH----HHHcCCC
Confidence 58999999999544443 3331 346899999988777666655 3445553
No 82
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=37.99 E-value=1.8e+02 Score=30.57 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=59.4
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHh---CCceEEeeeccccccccc
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRL---GLSFEFHPIAKKFGDIDA 336 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~sl---gvpFeF~~V~~~~eel~~ 336 (492)
...+|+|++.|.|.= |.+-...+ -=++.||+.+.+.++++.+|..+.-+.. ...+.|.......+....
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~~-----i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~ 133 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKAK-----IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE 133 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS
T ss_pred CCCeEEEecCCCchh---HHHHHhcC-----CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc
Confidence 778999999999852 11111112 1357899999999999999986655432 233444432211111111
Q ss_pred c---cccccCCCeEEEee--ccccccCCCCccHHHHHHH-HhcCCcEEEEE
Q 045494 337 S---MLQLRRGETLAVHW--LQHSLYDATGPDWKTLRLL-EELSPRVVTLV 381 (492)
Q Consensus 337 ~---~l~l~~gEaLaVn~--~lh~L~~~~~~~~~~L~~I-r~L~Pkvvvlv 381 (492)
. .+.-..+..=+|+| .+|-..........+|+.| ..|+|--+++.
T Consensus 134 ~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 134 SLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp HHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 11111122224444 4666655544445566666 77888876654
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=37.74 E-value=68 Score=29.33 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=30.7
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHH
Q 045494 261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQL 311 (492)
Q Consensus 261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL 311 (492)
.-.|+|+|.+.|. +...|+.+ + .++||++.+.+.++.+.+++
T Consensus 24 ~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 24 GDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDINPYAVECAKCNA 65 (188)
T ss_pred CCEEEEEccccCH----HHHHHHhh-c----ceEEEEECCHHHHHHHHHHH
Confidence 3469999999998 45555655 2 58999998877776665555
No 84
>PRK07402 precorrin-6B methylase; Provisional
Probab=37.60 E-value=1.3e+02 Score=28.42 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=40.5
Q ss_pred hhhhhhhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 045494 243 FAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFN 313 (492)
Q Consensus 243 fa~ftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~ 313 (492)
...--..+.+++.+.-...=.|+|+|.|.|.- ... ++... |.-++|+|+.+.+.++.+.+++.+
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~-~~~---la~~~---~~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTI-PVE---AGLLC---PKGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHH-HHH---HHHHC---CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 44444556667777544444699999999972 222 23221 225899999988777766666543
No 85
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=37.45 E-value=90 Score=29.15 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=33.2
Q ss_pred HHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 045494 252 ILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLF 312 (492)
Q Consensus 252 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~ 312 (492)
+++.+.-.+.-.|+|+|.+.|. +--.++.+ + |..++|+|+.+.+.++.+.+++.
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~----~~~~la~~--~-~~~~v~~vD~s~~~~~~a~~n~~ 76 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGS----VSIEAALQ--F-PSLQVTAIERNPDALRLIKENRQ 76 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCH----HHHHHHHH--C-CCCEEEEEECCHHHHHHHHHHHH
Confidence 3344432333469999999884 22333433 2 45799999998777766555443
No 86
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=36.25 E-value=92 Score=32.58 Aligned_cols=59 Identities=29% Similarity=0.430 Sum_probs=42.4
Q ss_pred HHHhhhcc---CceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCC
Q 045494 251 AILEAFHR---RDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGL 320 (492)
Q Consensus 251 AILEA~~g---~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgv 320 (492)
+++|++.. .+.-||.|.|.|.|.==-+++..| |.-|+|+|+-+...+.-++++ |+++++
T Consensus 136 ~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-------~~~~v~AiD~S~~Ai~La~eN----~qr~~l 197 (328)
T KOG2904|consen 136 AVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-------PQCTVTAIDVSKAAIKLAKEN----AQRLKL 197 (328)
T ss_pred HHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-------CCceEEEEeccHHHHHHHHHH----HHHHhh
Confidence 45555553 245589999999998777777765 357999999888777666655 555555
No 87
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=34.74 E-value=2.6e+02 Score=28.81 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=32.5
Q ss_pred HHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 045494 252 ILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLF 312 (492)
Q Consensus 252 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~ 312 (492)
|++++.-...=.|+|+|.|.|.-- ..|+.+. -+++||+.+.+.++.+.+++.
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~LT----~~Ll~~~-----~~V~avEiD~~li~~l~~~~~ 79 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGNLT----EKLLQLA-----KKVIAIEIDPRMVAELKKRFQ 79 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHHHH----HHHHHhC-----CcEEEEECCHHHHHHHHHHHH
Confidence 334443333346999999988744 4444442 269999988776665555554
No 88
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=34.34 E-value=85 Score=29.12 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=64.4
Q ss_pred hhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeee
Q 045494 248 SNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPI 327 (492)
Q Consensus 248 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V 327 (492)
+-..+++.+...+.=.|+|+|.|.|.-=. .|+.+ -|..++|+++.+...++.+.++ ++..++.- ++.+
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~----~la~~---~~~~~v~~vDi~~~a~~~a~~n----~~~n~~~~-v~~~ 86 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVISL----ALAKR---GPDAKVTAVDINPDALELAKRN----AERNGLEN-VEVV 86 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHHH----HHHHT---STCEEEEEEESBHHHHHHHHHH----HHHTTCTT-EEEE
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHHH----HHHHh---CCCCEEEEEcCCHHHHHHHHHH----HHhcCccc-cccc
Confidence 45577777776677779999999995322 23333 2568899999988777666555 34456652 3333
Q ss_pred cccccc-cccccccccCCCeEEEeeccccccCCC-CccHHHH-HHHHhcCCcEEEEE
Q 045494 328 AKKFGD-IDASMLQLRRGETLAVHWLQHSLYDAT-GPDWKTL-RLLEELSPRVVTLV 381 (492)
Q Consensus 328 ~~~~ee-l~~~~l~l~~gEaLaVn~~lh~L~~~~-~~~~~~L-~~Ir~L~Pkvvvlv 381 (492)
..+.-+ +... +=+.|+.|-.+|.-.+.. ...+.++ ..-+-|+|.-..+.
T Consensus 87 ~~d~~~~~~~~-----~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 87 QSDLFEALPDG-----KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ESSTTTTCCTT-----CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccc-----ceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 333322 2111 113567785544321110 1123443 45578999876643
No 89
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=32.84 E-value=92 Score=30.68 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=33.2
Q ss_pred cCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 045494 258 RRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLF 312 (492)
Q Consensus 258 g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~ 312 (492)
..+..+|+|+|.|.|.=-. .|+... |..++||++.+...++.+.+++.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~----~la~~~---~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIAL----ALAKER---PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred ccCCCEEEEEcCcHHHHHH----HHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 4456789999999995333 333322 45789999988877776666654
No 90
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=31.74 E-value=94 Score=29.96 Aligned_cols=51 Identities=31% Similarity=0.433 Sum_probs=33.5
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS 321 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp 321 (492)
+..+|+|+|.|.|. +...++.+. |..++||++.+...++.+.+++ +..|++
T Consensus 87 ~~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~~~~~~~a~~~~----~~~~~~ 137 (251)
T TIGR03534 87 GPLRVLDLGTGSGA----IALALAKER---PDARVTAVDISPEALAVARKNA----ARLGLD 137 (251)
T ss_pred CCCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHH----HHcCCC
Confidence 34589999999983 344444432 3469999998877666555444 345654
No 91
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=30.67 E-value=2.5e+02 Score=25.73 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=41.0
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccccccccccccCC--CeEEEeeccccccCCCCccHHHHH-HHH
Q 045494 295 TGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGDIDASMLQLRRG--ETLAVHWLQHSLYDATGPDWKTLR-LLE 371 (492)
Q Consensus 295 TgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~eel~~~~l~l~~g--EaLaVn~~lh~L~~~~~~~~~~L~-~Ir 371 (492)
|||+.+.+-|+...++...-+....-..+| +..+.+++. ..++ ++|.+++.+|.+.+ +..+|+ .-|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~--~~~d~~~lp-----~~~~~fD~v~~~~~l~~~~d----~~~~l~ei~r 69 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEW--IEGDAIDLP-----FDDCEFDAVTMGYGLRNVVD----RLRAMKEMYR 69 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEE--EEechhhCC-----CCCCCeeEEEecchhhcCCC----HHHHHHHHHH
Confidence 688888888877666654322222123444 223333332 2222 34555555665532 445555 447
Q ss_pred hcCCcEEE-EEeec
Q 045494 372 ELSPRVVT-LVEQE 384 (492)
Q Consensus 372 ~L~Pkvvv-lvEqe 384 (492)
-|+|.-.+ +.|-.
T Consensus 70 vLkpGG~l~i~d~~ 83 (160)
T PLN02232 70 VLKPGSRVSILDFN 83 (160)
T ss_pred HcCcCeEEEEEECC
Confidence 89998544 44543
No 92
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=30.48 E-value=1.1e+02 Score=29.05 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=35.5
Q ss_pred HHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHH
Q 045494 251 AILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNF 314 (492)
Q Consensus 251 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~f 314 (492)
.+++.+.-...-.|+|+|.+.|.... +|..+. + ++++|+.+.+.++.+.+++.++
T Consensus 69 ~l~~~l~~~~~~~VLeiG~GsG~~t~-~la~~~----~----~v~~vd~~~~~~~~a~~~~~~~ 123 (212)
T PRK00312 69 RMTELLELKPGDRVLEIGTGSGYQAA-VLAHLV----R----RVFSVERIKTLQWEAKRRLKQL 123 (212)
T ss_pred HHHHhcCCCCCCEEEEECCCccHHHH-HHHHHh----C----EEEEEeCCHHHHHHHHHHHHHC
Confidence 33455554555679999999997433 333332 1 6999998877666666665543
No 93
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=30.32 E-value=86 Score=32.78 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=41.8
Q ss_pred hhHHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 045494 248 SNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLF 312 (492)
Q Consensus 248 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~ 312 (492)
.-+.+||-+.....-+|+|||.|+|.==.. ||.+ .|..+||-++-+...++-..++|.
T Consensus 146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~----la~~---~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLV----LAKK---SPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred HHHHHHHhCCccCCCcEEEeCCCccHHHHH----HHHh---CCCCeEEEEecCHHHHHHHHHhHH
Confidence 456777877766556999999999964333 3333 258999999988877877666664
No 94
>PHA03411 putative methyltransferase; Provisional
Probab=30.20 E-value=93 Score=32.19 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=45.9
Q ss_pred HHHHHHhcCCccchhhhhhhHHHHhhh--ccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHH
Q 045494 230 AFQVFNNVSPFIKFAHFTSNQAILEAF--HRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLET 307 (492)
Q Consensus 230 A~~~f~e~sP~~kfa~ftANqAILEA~--~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~et 307 (492)
.+..|..-+ +...+.|++...|+..+ .....-.|+|+|.|.|. +...++.+.+ ..+||||+.+...++.+
T Consensus 33 v~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGi----lsl~la~r~~---~~~V~gVDisp~al~~A 104 (279)
T PHA03411 33 CYNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGR----LSFCMLHRCK---PEKIVCVELNPEFARIG 104 (279)
T ss_pred HHHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCH----HHHHHHHhCC---CCEEEEEECCHHHHHHH
Confidence 355555555 56667777788777443 22334579999999994 3334444432 26999999887666554
Q ss_pred HH
Q 045494 308 GK 309 (492)
Q Consensus 308 g~ 309 (492)
.+
T Consensus 105 r~ 106 (279)
T PHA03411 105 KR 106 (279)
T ss_pred HH
Confidence 43
No 95
>PRK03646 dadX alanine racemase; Reviewed
Probab=29.88 E-value=85 Score=33.11 Aligned_cols=55 Identities=5% Similarity=0.059 Sum_probs=34.4
Q ss_pred ceeEE-EEcccc-Cccc---hHHHHHHHhcCCCCCCeEEEeecCCC---HHHHHHHHHHHHHHHHHh
Q 045494 260 DRVHI-IDLDIM-QGLQ---WPALFHILATRNEGPPHLRMTGMGTS---MEVLLETGKQLFNFAKRL 318 (492)
Q Consensus 260 ~~VHI-IDfgI~-~G~Q---WpsLiqaLA~R~gGPP~LRITgI~~~---~~~L~etg~rL~~fA~sl 318 (492)
-+||| ||-|++ .|+. ++.+++.+.. -|.|+++||.+. .+....|.+.+..|.+-.
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~~~ 179 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSHFARADHPDGISEAMARIEQAA 179 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHH
Confidence 47899 999986 5875 5566666543 356999999652 122223666666664443
No 96
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=28.43 E-value=3.1e+02 Score=26.54 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=40.8
Q ss_pred ceeEE-EEccc---cCccch---HHHHHHHhcCCCCCCeEEEeecCC------CHHHHHHHHHHHHHHHHHh----CCce
Q 045494 260 DRVHI-IDLDI---MQGLQW---PALFHILATRNEGPPHLRMTGMGT------SMEVLLETGKQLFNFAKRL----GLSF 322 (492)
Q Consensus 260 ~~VHI-IDfgI---~~G~QW---psLiqaLA~R~gGPP~LRITgI~~------~~~~L~etg~rL~~fA~sl----gvpF 322 (492)
-+||| ||-|. .+|+.+ +.+++.+.. -|.|++.||.+ +.+...+.-+++.++++.+ |+++
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAA----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 47898 88884 478854 455555533 35588888843 2345566677777777666 5777
Q ss_pred EEeeec
Q 045494 323 EFHPIA 328 (492)
Q Consensus 323 eF~~V~ 328 (492)
++-.+-
T Consensus 193 ~~is~G 198 (222)
T cd00635 193 KELSMG 198 (222)
T ss_pred CEEECc
Confidence 665543
No 97
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=28.34 E-value=1.4e+02 Score=29.49 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=38.3
Q ss_pred hhhhhhHHHHhhhcc--CceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHH
Q 045494 244 AHFTSNQAILEAFHR--RDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQL 311 (492)
Q Consensus 244 a~ftANqAILEA~~g--~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL 311 (492)
++..+.+..++++.. ...-.|+|+|.|.|. |.-+++.. |+. +++||+.+...++.+.+++
T Consensus 101 g~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~----l~i~~~~~--g~~--~v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 101 GTHPTTRLCLEALEKLVLPGKTVLDVGCGSGI----LAIAAAKL--GAK--KVLAVDIDPQAVEAARENA 162 (250)
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHH----HHHHHHHc--CCC--eEEEEECCHHHHHHHHHHH
Confidence 344445556666652 244579999999884 33344433 333 5999999888887776654
No 98
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=28.18 E-value=1.3e+02 Score=31.34 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=44.3
Q ss_pred HHHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFN 313 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~ 313 (492)
+.+++++.-...-.+||...|.|.-=-.+++.+ ||..++.||+.+.+.++.+.++|.+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~------~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERL------GPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 356677754444479999999998777776644 4557999999999999999888865
No 99
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=28.08 E-value=84 Score=32.10 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=33.2
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFN 313 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~ 313 (492)
||+|+|.|.|..=.+|.+.. |..+|+|++-+.+.++-+.++...
T Consensus 113 ~ilDlGTGSG~iai~la~~~-------~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-------PDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-------cCCeEEEEECCHHHHHHHHHHHHH
Confidence 99999999997655554432 448999999998888777666443
No 100
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=27.62 E-value=1.8e+02 Score=28.89 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=43.3
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeecccccccc
Q 045494 261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIAKKFGDID 335 (492)
Q Consensus 261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~~~~eel~ 335 (492)
..|++|.|-|-|+ |.+.=+++. |.+++|-|++..-. -.-|...++.+|++ .++.. ...|++.
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~Kk----~~FL~~~~~eL~L~nv~i~~--~RaE~~~ 130 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLGKK----IAFLREVKKELGLENVEIVH--GRAEEFG 130 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCchH----HHHHHHHHHHhCCCCeEEeh--hhHhhcc
Confidence 5799999887776 888877763 56889999875332 24567778888887 77643 4455544
No 101
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=27.52 E-value=1.2e+02 Score=31.10 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCCeEEEeecCCCH----HHHHHHHHHHHHHHHHhCCceEEee
Q 045494 288 GPPHLRMTGMGTSM----EVLLETGKQLFNFAKRLGLSFEFHP 326 (492)
Q Consensus 288 GPP~LRITgI~~~~----~~L~etg~rL~~fA~slgvpFeF~~ 326 (492)
|+|.-|||..+++. +.|+++.+.+.+-++.+|...+|+-
T Consensus 219 gaPrYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~~~~~r 261 (269)
T COG1093 219 GAPRYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGEGTFIR 261 (269)
T ss_pred cCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 88999999998863 4689999999999999999999975
No 102
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=26.32 E-value=1.3e+02 Score=28.58 Aligned_cols=55 Identities=25% Similarity=0.318 Sum_probs=45.0
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhhcc
Q 045494 157 LITLLLECA-VAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVLN 212 (492)
Q Consensus 157 L~~LLl~CA-eAV~~gn~~~A~~lL~~L~~laSp~Gdsp~qRlA~yFaeAL~~Rl~~ 212 (492)
+..+|+.|. ..+..++...|..++..|..+..|..+ ...|+..-|.+|+..=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~-~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDD-LYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHHHHcC
Confidence 556666665 778888999999999999999877654 6899999999999765544
No 103
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=26.28 E-value=6.4e+02 Score=27.00 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=56.0
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc-eEEeeeccccccccccccc
Q 045494 262 VHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS-FEFHPIAKKFGDIDASMLQ 340 (492)
Q Consensus 262 VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp-FeF~~V~~~~eel~~~~l~ 340 (492)
-+|+|++.|.|.==. .||.+. -+++||+.+.+.++.+.+++. ..|+. .+| +..+.++.-+. +.
T Consensus 294 ~~vLDl~cG~G~~sl----~la~~~-----~~V~~vE~~~~av~~a~~n~~----~~~~~nv~~--~~~d~~~~l~~-~~ 357 (431)
T TIGR00479 294 ELVVDAYCGVGTFTL----PLAKQA-----KSVVGIEVVPESVEKAQQNAE----LNGIANVEF--LAGTLETVLPK-QP 357 (431)
T ss_pred CEEEEcCCCcCHHHH----HHHHhC-----CEEEEEEcCHHHHHHHHHHHH----HhCCCceEE--EeCCHHHHHHH-HH
Confidence 479999998885322 244432 279999998888877766653 33442 333 33333331111 11
Q ss_pred ccC--CCeEEEeeccccccCCCCccHHHHHHHHhcCCcEEEEEe
Q 045494 341 LRR--GETLAVHWLQHSLYDATGPDWKTLRLLEELSPRVVTLVE 382 (492)
Q Consensus 341 l~~--gEaLaVn~~lh~L~~~~~~~~~~L~~Ir~L~PkvvvlvE 382 (492)
... -++|+++-. ..+-...+++.+.+++|+-++.+.
T Consensus 358 ~~~~~~D~vi~dPP------r~G~~~~~l~~l~~l~~~~ivyvs 395 (431)
T TIGR00479 358 WAGQIPDVLLLDPP------RKGCAAEVLRTIIELKPERIVYVS 395 (431)
T ss_pred hcCCCCCEEEECcC------CCCCCHHHHHHHHhcCCCEEEEEc
Confidence 111 134443321 123356788999999999877663
No 104
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=26.28 E-value=1.4e+02 Score=28.83 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=40.5
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecccccc
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKKFGD 333 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~~ee 333 (492)
.|+|+|-|-|+ |.+.=+++. |.+++|-|++..-.. .-|...++.+|++ ....+....|+
T Consensus 51 ~~lDiGSGaGf--PGipLaI~~-----p~~~~~LvEs~~KK~----~FL~~~~~~L~L~-nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGF--PGIPLAIAR-----PDLQVTLVESVGKKV----AFLKEVVRELGLS-NVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTT--THHHHHHH------TTSEEEEEESSHHHH----HHHHHHHHHHT-S-SEEEEES-HHH
T ss_pred eEEecCCCCCC--hhHHHHHhC-----CCCcEEEEeCCchHH----HHHHHHHHHhCCC-CEEEEEeeecc
Confidence 59999887665 888888874 678999999875433 4577788889997 34444455555
No 105
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=26.13 E-value=5.9e+02 Score=25.47 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=31.4
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHH
Q 045494 263 HIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFA 315 (492)
Q Consensus 263 HIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA 315 (492)
+|+|+|.+.|. +...+..+. +.-++|+|+.+.+.++...+.+....
T Consensus 75 ~VL~iG~G~G~----~~~~ll~~~---~~~~v~~veid~~vi~~a~~~~~~~~ 120 (270)
T TIGR00417 75 HVLVIGGGDGG----VLREVLKHK---SVEKATLVDIDEKVIELSKKFLPSLA 120 (270)
T ss_pred EEEEEcCCchH----HHHHHHhCC---CcceEEEEeCCHHHHHHHHHHhHhhc
Confidence 88999998886 334444442 34579999988777776666655544
No 106
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=26.05 E-value=68 Score=32.68 Aligned_cols=26 Identities=12% Similarity=-0.092 Sum_probs=18.5
Q ss_pred ccCceeEEEEccccCccchHHHHHHHhcCC
Q 045494 257 HRRDRVHIIDLDIMQGLQWPALFHILATRN 286 (492)
Q Consensus 257 ~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~ 286 (492)
.|.+.+||||+ +.+ +. .+|..++...
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 48999999999 445 66 5566666544
No 107
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=26.02 E-value=1.1e+02 Score=29.26 Aligned_cols=106 Identities=12% Similarity=0.115 Sum_probs=57.1
Q ss_pred ceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCC-ceEEeeecccc-cccccc
Q 045494 260 DRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGL-SFEFHPIAKKF-GDIDAS 337 (492)
Q Consensus 260 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgv-pFeF~~V~~~~-eel~~~ 337 (492)
+.-.|+|+|.+.|.-...|.+ +. |.-++|||+.+.+.++.+.+++.. .++ .++| +..+. +.+...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~s~~~i~~a~~~~~~----~~~~~v~~--~~~d~~~~l~~~ 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEVHEPGVGKALKKIEE----EGLTNLRL--LCGDAVEVLLDM 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEechHHHHHHHHHHHH----cCCCCEEE--EecCHHHHHHHH
Confidence 445799999999976555543 32 446899999988877666555443 343 2444 33333 222200
Q ss_pred cccccCC--CeEEEeecccccc--CC--CCccHHHHHHH-HhcCCcEEEEE
Q 045494 338 MLQLRRG--ETLAVHWLQHSLY--DA--TGPDWKTLRLL-EELSPRVVTLV 381 (492)
Q Consensus 338 ~l~l~~g--EaLaVn~~lh~L~--~~--~~~~~~~L~~I-r~L~Pkvvvlv 381 (492)
+.++ +.|.+|+...... .. ......+|+.+ +-|+|.-++++
T Consensus 107 ---~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 107 ---FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred ---cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 1122 3455554211100 00 01235677665 58899776654
No 108
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=24.65 E-value=1.3e+02 Score=30.53 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=34.6
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCc
Q 045494 261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLS 321 (492)
Q Consensus 261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvp 321 (492)
..+|+|+|.|.|. +.-+|+.+. |..++|||+.+...++.+.+++ +..|+.
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~---~~~~v~avDis~~al~~A~~n~----~~~~~~ 171 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF---PEAEVDAVDISPDALAVAEINI----ERHGLE 171 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHH----HHcCCC
Confidence 4589999999986 334444442 3479999999888787766664 444653
No 109
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=24.13 E-value=1.3e+02 Score=29.10 Aligned_cols=85 Identities=11% Similarity=0.075 Sum_probs=57.8
Q ss_pred ceeEEEEccccC---ccchHHHHHHHhcCCCCCCeEEE------eecCCCHHHHHHHHHHHHHHHHHhCCceEEeeeccc
Q 045494 260 DRVHIIDLDIMQ---GLQWPALFHILATRNEGPPHLRM------TGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAKK 330 (492)
Q Consensus 260 ~~VHIIDfgI~~---G~QWpsLiqaLA~R~gGPP~LRI------TgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~~ 330 (492)
.+|+||.|=-+. +-.=..+|.+|+.+ | +.+ |||... +....++.-+..|+++.+..|-|.++..+
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~---~~~~~y~~t~~IN~d-d~~~~~~~fVk~fie~~~~~~P~~~vllD 132 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--K---FPPVKYQTTTIINAD-DAIVGTGMFVKSSAKKGKKENPWSQVVLD 132 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--C---CCcccccceEEEECc-cchhhHHHHHHHHHHHhcccCCcceEEEC
Confidence 589999997553 35677899999654 2 566 788643 34667889999999999998877666554
Q ss_pred ccccccccccccC-CCe-EEEe
Q 045494 331 FGDIDASMLQLRR-GET-LAVH 350 (492)
Q Consensus 331 ~eel~~~~l~l~~-gEa-LaVn 350 (492)
........+.+.. .++ ++|+
T Consensus 133 ~~g~v~~~~gv~~~P~T~fVID 154 (184)
T TIGR01626 133 DKGAVKNAWQLNSEDSAIIVLD 154 (184)
T ss_pred CcchHHHhcCCCCCCceEEEEC
Confidence 3332233455543 256 5666
No 110
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=24.11 E-value=1.7e+02 Score=30.82 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=34.6
Q ss_pred cCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 045494 258 RRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLF 312 (492)
Q Consensus 258 g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~ 312 (492)
..+.+.|+|+|.|.|.=-+.|. .|. +..++||++-+...++.+.+++.
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa----~~~---~~~~~~atDId~~Al~~A~~Nv~ 159 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIG----VHE---YGWRFVGSDIDPQALASAQAIIS 159 (321)
T ss_pred CCCCceEEEecCCccHHHHHHH----hhC---CCCEEEEEeCCHHHHHHHHHHHH
Confidence 3467999999999886555543 332 24789999988887877766554
No 111
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=23.81 E-value=2.4e+02 Score=27.98 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=64.9
Q ss_pred HHHh-hhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeecc
Q 045494 251 AILE-AFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIAK 329 (492)
Q Consensus 251 AILE-A~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~~ 329 (492)
++|. ++....-=+++|.|.+-| .|=+.||.|. =|+|+++-+...++.+.+||...+ +|.|.--.|..
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G----~lT~~LA~rC-----d~LlavDis~~Al~~Ar~Rl~~~~---~V~~~~~dvp~ 100 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIG----VLTERLAPRC-----DRLLAVDISPRALARARERLAGLP---HVEWIQADVPE 100 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTS----HHHHHHGGGE-----EEEEEEES-HHHHHHHHHHTTT-S---SEEEEES-TTT
T ss_pred HHHHHhcCccccceeEecCCCcc----HHHHHHHHhh-----CceEEEeCCHHHHHHHHHhcCCCC---CeEEEECcCCC
Confidence 4555 577777888999998877 4778898874 589999999999999999998764 33332222211
Q ss_pred cccccccccccccCCCeEEEeeccccccCCCCccHHHH-HHHHhcCCcEEEEEe
Q 045494 330 KFGDIDASMLQLRRGETLAVHWLQHSLYDATGPDWKTL-RLLEELSPRVVTLVE 382 (492)
Q Consensus 330 ~~eel~~~~l~l~~gEaLaVn~~lh~L~~~~~~~~~~L-~~Ir~L~PkvvvlvE 382 (492)
.+. ...+ +.+++.=+++.|.+. ..+..++ +.+..|.|.-..++-
T Consensus 101 ~~P---~~~F-----DLIV~SEVlYYL~~~-~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 101 FWP---EGRF-----DLIVLSEVLYYLDDA-EDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp ------SS-E-----EEEEEES-GGGSSSH-HHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCC---CCCe-----eEEEEehHhHcCCCH-HHHHHHHHHHHHHhCCCCEEEEE
Confidence 110 0111 123344356655331 1234444 455789999888764
No 112
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=23.67 E-value=5.3e+02 Score=25.12 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=25.5
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHH
Q 045494 261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLL 305 (492)
Q Consensus 261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~ 305 (492)
.=.|+|+|.|.|. =...||.+ | ..+|||+.+...++
T Consensus 35 ~~rvLd~GCG~G~----da~~LA~~--G---~~V~gvD~S~~Ai~ 70 (213)
T TIGR03840 35 GARVFVPLCGKSL----DLAWLAEQ--G---HRVLGVELSEIAVE 70 (213)
T ss_pred CCeEEEeCCCchh----HHHHHHhC--C---CeEEEEeCCHHHHH
Confidence 3489999999883 22335544 2 68999999877665
No 113
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=23.05 E-value=46 Score=35.76 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=11.0
Q ss_pred cCceeEEEEcccc
Q 045494 258 RRDRVHIIDLDIM 270 (492)
Q Consensus 258 g~~~VHIIDfgI~ 270 (492)
.+..|||||||+.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 4679999999974
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=22.99 E-value=1.5e+02 Score=32.19 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=37.8
Q ss_pred HHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHH
Q 045494 252 ILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQL 311 (492)
Q Consensus 252 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL 311 (492)
+++.+.+.+.-.|||+|.|.| .++-.||.+. |...++||+.....+..+.++.
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG----~~ll~lA~~~---P~~~~iGIEI~~~~i~~a~~ka 166 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSG----RHLLYQAKNN---PNKLFIGIEIHTPSIEQVLKQI 166 (390)
T ss_pred HHHHhcCCCCCeEEEEcCccc----HHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHH
Confidence 455666666668999999999 4555666663 5579999998877666555554
No 115
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=22.45 E-value=2e+02 Score=27.67 Aligned_cols=57 Identities=12% Similarity=0.122 Sum_probs=36.9
Q ss_pred HHHhhhccCceeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 045494 251 AILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFN 313 (492)
Q Consensus 251 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~ 313 (492)
.+++++.=.+.-.|+|+|.+.|..=.. ||.+. ++.-++++|+.+.+.++.+.+++.+
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~----la~~~--~~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAV----LAEIV--GRDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHH----HHHHh--CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 456666545556899999988874332 33332 2335899999887777666666543
No 116
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=22.35 E-value=3e+02 Score=30.39 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=50.9
Q ss_pred HHHHhhhccCceeEEEEccccCccchHH--HHHHHhcCC-CC-CCeEEE----eecCCC--HHHHHHHHHHHHHHHHHhC
Q 045494 250 QAILEAFHRRDRVHIIDLDIMQGLQWPA--LFHILATRN-EG-PPHLRM----TGMGTS--MEVLLETGKQLFNFAKRLG 319 (492)
Q Consensus 250 qAILEA~~g~~~VHIIDfgI~~G~QWps--LiqaLA~R~-gG-PP~LRI----TgI~~~--~~~L~etg~rL~~fA~slg 319 (492)
.+|-+.....++-+||=|+.|--..=.- ..+||...| ++ .+.+.+ |++..| .+.++.+-+++.++|++.|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~ 82 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQG 82 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666656677888888764322111 123443322 22 245666 566655 3467788899999999999
Q ss_pred CceEEeeecc
Q 045494 320 LSFEFHPIAK 329 (492)
Q Consensus 320 vpFeF~~V~~ 329 (492)
+||..+.+.-
T Consensus 83 lpi~~~~v~P 92 (447)
T TIGR03183 83 LPIEPHRLTP 92 (447)
T ss_pred CCeEEEecCC
Confidence 9999987643
No 117
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=21.66 E-value=1.1e+02 Score=30.21 Aligned_cols=59 Identities=25% Similarity=0.207 Sum_probs=33.6
Q ss_pred ceeEE-EEcc--c-cCccchHHHHHHHhcCCCCCCeEEEeecCC------CHHHHHHHHHHHHHHHHHhC
Q 045494 260 DRVHI-IDLD--I-MQGLQWPALFHILATRNEGPPHLRMTGMGT------SMEVLLETGKQLFNFAKRLG 319 (492)
Q Consensus 260 ~~VHI-IDfg--I-~~G~QWpsLiqaLA~R~gGPP~LRITgI~~------~~~~L~etg~rL~~fA~slg 319 (492)
-.||| ||-| + ..|+.+..+. +++.+...-|.|++.|+-+ +.+...+.-+.+.++.+.++
T Consensus 121 ~~V~l~vdtg~gm~R~G~~~~e~~-~~~~~i~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (229)
T TIGR00044 121 LNVLLQINISDEESKSGIQPEELL-ELAIQIEELKHLKLRGLMTIGAPTDSHEDQEENFRFMKLLFWQIK 189 (229)
T ss_pred ceEEEEEECCCCCCCCCCCHHHHH-HHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36888 8884 4 3688653332 2333333446799999843 23444455566666665544
No 118
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=21.13 E-value=6.6e+02 Score=24.55 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=26.2
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHH
Q 045494 261 RVHIIDLDIMQGLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLE 306 (492)
Q Consensus 261 ~VHIIDfgI~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~e 306 (492)
.-.|+|.|.|.|. -+..||.+ | ..+|||+.+...++.
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~--G---~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ--G---HEVLGVELSELAVEQ 74 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC--C---CeEEEEccCHHHHHH
Confidence 3478999999883 23345654 2 689999998776654
No 119
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=21.08 E-value=2.9e+02 Score=26.80 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=44.2
Q ss_pred ccchHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHhCCceEEeeec
Q 045494 272 GLQWPALFHILATRNEGPPHLRMTGMGTSMEVLLETGKQLFNFAKRLGLSFEFHPIA 328 (492)
Q Consensus 272 G~QWpsLiqaLA~R~gGPP~LRITgI~~~~~~L~etg~rL~~fA~slgvpFeF~~V~ 328 (492)
+..||-++..+..+.+.-+.-.|+-++.+.+.|+.+++-..++++..|.+++|..-.
T Consensus 9 S~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~tt 65 (183)
T PF02056_consen 9 STYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATT 65 (183)
T ss_dssp SCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEES
T ss_pred hHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 468898887777676655555666667778999999999999999999999987643
Done!