BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045495
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/313 (53%), Positives = 203/313 (64%), Gaps = 21/313 (6%)
Query: 253 TVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGI 312
V+QDG G + T+ +A+ AAP D S ++IY+K G Y+E V +A NK+NLM++GDG+
Sbjct: 6 VVAQDGTGDYQTLAEAVAAAP---DKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGM 62
Query: 313 NQTIITGNRSAVDGWTTFNSATFA-----------------GPSKFQAVALRSGGDLSTF 355
T ITG+ + VDG TTF SAT A GP+K QAVALR G D+S
Sbjct: 63 YATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVI 122
Query: 356 YSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVIT 415
C + YQDTLY HS RQFYR+ + GT+DFI GNAAVV Q C + AR P Q N++T
Sbjct: 123 NRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVT 182
Query: 416 AQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLINP 475
AQGRTDPNQ TG SI C A+ +L + PTYLGRPWKEYSRTVVM+S+L GLINP
Sbjct: 183 AQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP 242
Query: 476 AGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAI-NATDAANFTVSNFLLGDQ 534
AGW W GDFAL TLYY E+ N GPG+ T+ RV WPGYH I + A FTV+ + G
Sbjct: 243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGS 302
Query: 535 WLPRTGVPYTGGL 547
WL TGV Y GL
Sbjct: 303 WLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 320 bits (819), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/314 (52%), Positives = 203/314 (64%), Gaps = 21/314 (6%)
Query: 252 VTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDG 311
V V+ DG G + T+++A+ AAP D S ++I IK GVY+E V + K K N+M +GDG
Sbjct: 9 VVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDG 65
Query: 312 INQTIITGNRSAVDGWTTFNSATFA-----------------GPSKFQAVALRSGGDLST 354
TIIT +++ DG TTFNSAT A G +K QAVALR G DLS
Sbjct: 66 RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSA 125
Query: 355 FYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVI 414
FY C YQD+LY HS RQF+ C I GT+DFI GNAAVVLQ+C+IHAR P GQ N++
Sbjct: 126 FYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMV 185
Query: 415 TAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLIN 474
TAQGRTDPNQNTGI I A +L + PTYLGRPWKEYSRTVVMQS + +IN
Sbjct: 186 TAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN 245
Query: 475 PAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAI-NATDAANFTVSNFLLGD 533
PAGW W G+FAL TLYY EY N G G+ T+ RVTW G+ I ++T+A FT +F+ G
Sbjct: 246 PAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG 305
Query: 534 QWLPRTGVPYTGGL 547
WL T P++ GL
Sbjct: 306 SWLKATTFPFSLGL 319
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 131/303 (43%), Gaps = 73/303 (24%)
Query: 255 SQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQ 314
S DG+ F TI DAI +AP + F+I IK+GVY E ++I +N NL + G+ N
Sbjct: 12 SSDGK-TFKTIADAIASAP----AGSTPFVILIKNGVYNERLTITRN--NLHLKGESRNG 64
Query: 315 TIITGN------RSAVDGWTTFNSATFAGPSK---------------------------- 340
+I +S W T S+T +K
Sbjct: 65 AVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSK 124
Query: 341 ---FQAVAL--RSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVV 395
QAVAL GD + F S GYQDTLY R F+ +C I GT+DFI G+ +
Sbjct: 125 IKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTAL 184
Query: 396 LQNCNIHARLPM-IGQYNV---ITAQGRTDPNQNTGISIHNC-TFRAADELASSNRTLPT 450
NC++ +R + NV +TA T+ NQ G+ I N R +D + + +
Sbjct: 185 FNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKSYG--- 240
Query: 451 YLGRPWKEYS--------------RTVVMQSFLDGLINPAGWQIWTG-DFALSTLYYAEY 495
LGRPW + +TV + + +D I GW +G D +T+++
Sbjct: 241 -LGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPE 297
Query: 496 DNR 498
D+R
Sbjct: 298 DSR 300
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 131/303 (43%), Gaps = 73/303 (24%)
Query: 255 SQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQ 314
S DG+ F TI DAI +AP + F+I IK+GVY E ++I +N NL + G+ N
Sbjct: 12 SSDGK-TFKTIADAIASAP----AGSTPFVILIKNGVYNERLTITRN--NLHLKGESRNG 64
Query: 315 TIITGN------RSAVDGWTTFNSATFAGPSK---------------------------- 340
+I +S W T S+T +K
Sbjct: 65 AVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSK 124
Query: 341 ---FQAVAL--RSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVV 395
QAVAL GD + F S GYQDTLY R F+ +C I GT+DFI G+ +
Sbjct: 125 IKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTAL 184
Query: 396 LQNCNIHARLPM-IGQYNV---ITAQGRTDPNQNTGISIHNC-TFRAADELASSNRTLPT 450
NC++ +R + NV +TA T+ NQ G+ I N R +D + + +
Sbjct: 185 FNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKSYG--- 240
Query: 451 YLGRPWKEYS--------------RTVVMQSFLDGLINPAGWQIWTG-DFALSTLYYAEY 495
LGRPW + +TV + + +D I GW +G D +T+++
Sbjct: 241 -LGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPE 297
Query: 496 DNR 498
D+R
Sbjct: 298 DSR 300
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 46/183 (25%)
Query: 262 FSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNR 321
FS+IN A+ +AP D + F+I++K+GVY E + +A++ + L G+ + T+I N
Sbjct: 44 FSSINAALKSAPKD----DTPFIIFLKNGVYTERLEVARSHVTLK--GENRDGTVIGANT 97
Query: 322 SAV------DGWTTFNSATF----------------------------AGPSKF---QAV 344
+A + W T S+T P+K QAV
Sbjct: 98 AAGMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAV 157
Query: 345 AL--RSGGDLSTFYSCSFEGYQDTLYTHS-LRQFYRECDIYGTIDFILGNAAVVLQNCNI 401
AL D + F + EGYQDTLY+ + R ++ +C+I G +DFI G+ V NCNI
Sbjct: 158 ALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCNI 217
Query: 402 HAR 404
AR
Sbjct: 218 VAR 220
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 130/303 (42%), Gaps = 73/303 (24%)
Query: 255 SQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQ 314
S DG+ F TI DAI +AP + F+I IK+GVY E ++I +N NL + G+ N
Sbjct: 12 SSDGK-TFKTIADAIASAP----AGSTPFVILIKNGVYNERLTITRN--NLHLKGESRNG 64
Query: 315 TIITGN------RSAVDGWTTFNSATFAGPSK---------------------------- 340
+I +S W T S+T +K
Sbjct: 65 AVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSK 124
Query: 341 ---FQAVAL--RSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVV 395
QAVAL GD + F S GYQ TLY R F+ +C I GT+DFI G+ +
Sbjct: 125 IKDTQAVALYVTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTAL 184
Query: 396 LQNCNIHARLPM-IGQYNV---ITAQGRTDPNQNTGISIHNC-TFRAADELASSNRTLPT 450
NC++ +R + NV +TA T+ NQ G+ I N R +D + + +
Sbjct: 185 FNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKSYG--- 240
Query: 451 YLGRPWKEYS--------------RTVVMQSFLDGLINPAGWQIWTG-DFALSTLYYAEY 495
LGRPW + +TV + + +D I GW +G D +T+++
Sbjct: 241 -LGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPE 297
Query: 496 DNR 498
D+R
Sbjct: 298 DSR 300
>pdb|3JZ4|C Chain C, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 285 IYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITG 319
+Y++DGVY + + ++ + IGDG++ + G
Sbjct: 294 LYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIG 328
>pdb|3JZ4|A Chain A, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|B Chain B, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|D Chain D, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 285 IYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITG 319
+Y++DGVY + + ++ + IGDG++ + G
Sbjct: 294 LYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIG 328
>pdb|3FM2|A Chain A, Crystal Structure Of A Putative Heme-binding Protein
(ava_4353) From Anabaena Variabilis Atcc 29413 At 1.80 A
Resolution
pdb|3FM2|B Chain B, Crystal Structure Of A Putative Heme-binding Protein
(ava_4353) From Anabaena Variabilis Atcc 29413 At 1.80 A
Resolution
Length = 135
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 369 THSLRQFYRECDIYGTIDFILGNAAVVLQ 397
+HSL+ F C+ GT+ I+ ++A VL+
Sbjct: 3 SHSLKDFLEACETLGTLRLIVTSSAAVLE 31
>pdb|1G6E|A Chain A, Antifungal Protein From Streptomyces Tendae Tu901, 30-
Conformers Ensemble
pdb|1GH5|A Chain A, Antifungal Protein From Streptomyces Tendae Tu901, Nmr
Average Structure
Length = 87
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 419 RTDPNQNTGISIHNCTFRAADELASSNR-TLPTYL-GRPWKEYSRTVVMQSFLDGLINP 475
RTD N+N+ + IHN R D L +N T+P + G W E VV F L +P
Sbjct: 4 RTDCNENSYLEIHNNEGR--DTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDP 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,139,006
Number of Sequences: 62578
Number of extensions: 666852
Number of successful extensions: 1413
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 49
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)